BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7139
(876 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14AI0|DCC1_MOUSE Sister chromatid cohesion protein DCC1 OS=Mus musculus GN=DSCC1
PE=2 SV=1
Length = 399
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 4/170 (2%)
Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
GY R L+ DY ++L+H+ LVDS SWS D++ T L L P E+++ Y
Sbjct: 199 GYWRILEFDYEIKLLNHVTQLVDSESWSLDRVPLTVCLQELGPLEPEEMIEHCLKCYGKR 258
Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
DK + Y+ L DKICRV E LL+ KF L +F VWQ SVPEG+ T L QL+
Sbjct: 259 YVDKDD----VYFELDADKICRVTAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLK 314
Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
GLA V ++S+P ++ +L E + R + LF +++KWT EDI PYI+
Sbjct: 315 GLALVDRNSRPEIIFLLKVDDLPEGTQDRFNSLFSLREKWTEEDITPYIQ 364
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 357 RTVQDSKVVIAHAKLTEDELCPITQAIYM-----GSSMQSLKLMEIPQSLISEIQQGNRV 411
RT ++ + AKL EL P + G++ L+E+ +L +++ G+
Sbjct: 9 RTREEVDATLQVAKLNATELLPTVHCLSFSSGTGGAATGDFCLLELEPALCQQLEAGDSF 68
Query: 412 LFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPDHPRIKENNT 460
+ RGD + VLC++ +T+ +K A+TSN L I G PD ++KE T
Sbjct: 69 VIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIPGCKTPD--QLKEEET 115
>sp|Q66I84|DCC1_DANRE Sister chromatid cohesion protein DCC1 OS=Danio rerio GN=dscc1 PE=2
SV=1
Length = 391
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 98/170 (57%), Gaps = 3/170 (1%)
Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
G+ R LD DY ++L H+ LVDS SWS ++ + L +L P +++ + Y
Sbjct: 189 GFWRILDFDYEMKLLGHVTQLVDSESWSFSKVPLSVCLEELGSLEPKAMIEHCLNCYGRR 248
Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
+D+ NQ Y L EDK+CR + LL+ KF L++F VWQ SVPEG+ T L QL
Sbjct: 249 HSDEDNQ---VMYALDEDKVCRATAQLLLQNAVKFNLSEFQEVWQQSVPEGMGTRLDQLR 305
Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
GLA + +SSKP + +L ED R + LF +++KWT +DI PYI+
Sbjct: 306 GLALIDRSSKPETISLLRVEDLPEDTLERFNSLFSLREKWTQDDIEPYIQ 355
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 357 RTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQSLK--LMEIPQSLISEIQQGNRVLFR 414
RT+++ + + AK+ E++L P+T + G ++ S LME+ ++L I+ G ++ R
Sbjct: 2 RTLEEVQGTLQIAKVKEEDLQPVTYCLSFGDNVSSGDYCLMEVDENLCKHIESGKSLIIR 61
Query: 415 GDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPD 451
GD + VLC++ +T+ +K A+TSN L + G PD
Sbjct: 62 GDKDEHAVLCSEDKTYDLKIADTSNLLLFVPGCKTPD 98
>sp|Q9BVC3|DCC1_HUMAN Sister chromatid cohesion protein DCC1 OS=Homo sapiens GN=DSCC1
PE=1 SV=2
Length = 393
Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 98/170 (57%), Gaps = 4/170 (2%)
Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
GY R L+ DY ++L+H+ LVDS SWS ++ L L P E+++ Y +
Sbjct: 193 GYWRILEFDYEMKLLNHVTQLVDSESWSFGKVPLNTCLQELGPLEPEEMIEHCLKCYGKK 252
Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
D+ GE Y+ L DKICR LL+ KF L +F VWQ SVPEG+ T+L QL+
Sbjct: 253 YVDE----GEVYFELDADKICRAAARMLLQNAVKFNLAEFQEVWQQSVPEGMVTSLDQLK 308
Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
GLA V + S+P ++ +L ED + R + LF +++KWT EDI PYI+
Sbjct: 309 GLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQ 358
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 356 ERTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQSLK-----LMEIPQSLISEIQQGNR 410
+RT + + AKL EL P + G L+E+ +L +++ G+
Sbjct: 2 KRTRDEVDATLQIAKLNAAELLPAVHCLGFGPGASGAAAGDFCLLELEPTLCQQLEDGHS 61
Query: 411 VLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPD 451
++ RGD + VLC++ +T+ +K A+TSN L I G PD
Sbjct: 62 LVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIPGCKTPD 102
>sp|Q6GL75|DCC1_XENTR Sister chromatid cohesion protein DCC1 OS=Xenopus tropicalis
GN=dscc1 PE=2 SV=1
Length = 391
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 14/228 (6%)
Query: 651 EETVNPPTDQQCIEISDETLGTTEETVN--PPTDQQCIEIKRFDRANSSLGFRFLLFPGY 708
E T N P +++ E D +L TTE+ +N ++++ ++ + A S G+
Sbjct: 141 ENTYNGPENER--ESQDNSLHTTEDLLNMIQASNEELVDHLKAIHACS--------INGF 190
Query: 709 IRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVEST 768
R LD DY ++L+HI L+DS SWS ++ L +L P E+++ Y
Sbjct: 191 WRLLDFDYEMKLLNHITQLIDSESWSFSKVPLPVCLQELRSLEPEEMIEHCLTCYGKRLI 250
Query: 769 DKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGL 828
D+ G ++ L EDKICR LL+ KF L +F VWQ SVPEG+ T L QL+GL
Sbjct: 251 DEGT--GGDFFALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPEGMNTRLDQLKGL 308
Query: 829 AFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
A V ++S+P + +L ED + R + LF +++KW DI PYI+
Sbjct: 309 ALVDRTSRPETIFLLKTEDLPEDTQERFNTLFGMREKWAEADIAPYIK 356
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 357 RTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQS--LKLMEIPQSLISEIQQGNRVLFR 414
R+ ++ + + AK+ ++L + S S LME+ +L +I+ G+ ++ R
Sbjct: 3 RSAEEVEATLQIAKVDLEDLRNTVHCLTFSSDFTSGDYSLMELDDTLCKQIEAGDSLVIR 62
Query: 415 GDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPD 451
GD D VLC+Q +T+ +K A+TSN L I G PD
Sbjct: 63 GDKSDHAVLCSQDKTYDLKIADTSNLLLFIPGCKTPD 99
>sp|Q6GMB0|DCC1_XENLA Sister chromatid cohesion protein DCC1 OS=Xenopus laevis GN=dscc1
PE=2 SV=1
Length = 390
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 95/170 (55%), Gaps = 4/170 (2%)
Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMVE 766
G R LD DY ++L+HI L+DS SWS ++ L +L P E+++ H +
Sbjct: 190 GIWRLLDFDYEMKLLNHITQLIDSESWSFSKVPLQVCLQELRSLEPEEMIE----HCLTC 245
Query: 767 STDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLE 826
+ + G + L EDKICR LL+ KF L +F VWQ SVP+G+ T L QL+
Sbjct: 246 YGKRLMEEGGDCFALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPDGMNTRLDQLK 305
Query: 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
GLA V ++S+P + +L ED + R + LF +++KWT DI PYI+
Sbjct: 306 GLALVDRTSRPETIFLLQTEDLPEDTQERFNTLFGMREKWTEADIAPYIQ 355
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 357 RTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQS--LKLMEIPQSLISEIQQGNRVLFR 414
R+ ++ + + AK+ ++L + S S LME+ +L +I+ G+ ++ R
Sbjct: 3 RSQEELEATLQIAKVNPEDLRSTVHCLSFSSEFTSGDYSLMELDDTLCKQIEAGDSLVIR 62
Query: 415 GDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPD 451
GD D VLC+Q +T+ +K A+TSN L I G PD
Sbjct: 63 GDKSDHAVLCSQDKTYDLKIADTSNLLLFIPGCKLPD 99
>sp|D3YVF0|AKAP5_MOUSE A-kinase anchor protein 5 OS=Mus musculus GN=Akap5 PE=3 SV=2
Length = 745
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 140/315 (44%), Gaps = 37/315 (11%)
Query: 70 AEETLGRMEESLCPPSNQQCIEMSDE-TLGTTEETVNPPTDQQCIEMAEEILSQPLNQQW 128
E LG+ EE+ ++++ + + E T G EE + Q E LSQ
Sbjct: 300 GETALGQAEEAAVGQADKRALSQAGEATAGHPEEATVIQAESQAKEGK---LSQAEETTV 356
Query: 129 SQMSEETLSQPPNQQCIEMTEETLGRTEESLCPPSNQQCIEMSVE-TLGTTEE-TVNPPS 186
+Q E LSQ + + + T+G+ EE+ + + ++ + E T+G EE TV
Sbjct: 357 AQAKETVLSQAKEGELSQAKKATVGQAEEATIDHTEKVTVDQAEETTVGQAEEATVGQAG 416
Query: 187 DQQCIEMSEETLSQPSNQQCIEMTEE-TLGRMEESPCPPSNQQCIEMSDE-TLGTTEETV 244
+ + E T+ + + ++ EE T+G+ EE+ + + ++ ++E T+G EE
Sbjct: 417 EAILSQAKEATVVGQAEEATVDRAEEATVGQAEEATVGHTEKVTVDQAEEATVGQAEEAT 476
Query: 245 NPPSDQQCIEMSEETLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEE-TLGRTE 303
+++ ++ +E +P+ Q E T+G+ EE+ + + ++ EE T+G+ E
Sbjct: 477 VGQAEEATVDWAE----KPT---VGQAEEATVGQAEEATVGHTEKVTVDQAEEATVGQAE 529
Query: 304 ETVNPPTDQQCIEMAEEILTPPINQQWSQMSEETLSQPSNQQFIKMTEDTLYERTV---- 359
E T++ ++ AEE Q E T+ Q K+T D E TV
Sbjct: 530 EATVGHTEKVTVDHAEEATV-------GQAEEATVGQAE-----KVTVDHAEEATVGQAE 577
Query: 360 -----QDSKVVIAHA 369
Q KV + HA
Sbjct: 578 EATVGQAEKVTVDHA 592
Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 137/328 (41%), Gaps = 52/328 (15%)
Query: 29 GRMEESLCPPSNQQCIEMSDE-TLGTTEETVNPPIDQQCNPMAEETLGRMEESLCPPSNQ 87
G+ EE+ ++++ + + E T G EE + Q E L + EE+ + +
Sbjct: 305 GQAEEAAVGQADKRALSQAGEATAGHPEEATVIQAESQAK---EGKLSQAEETTVAQAKE 361
Query: 88 QCIEMSDE---------TLGTTEETVNPPTDQQCIEMAEEI-LSQPLNQQWSQMSEETLS 137
+ + E T+G EE T++ ++ AEE + Q Q E LS
Sbjct: 362 TVLSQAKEGELSQAKKATVGQAEEATIDHTEKVTVDQAEETTVGQAEEATVGQAGEAILS 421
Query: 138 QPPNQQCIEMTEE---------TLGRTEESLCPPSNQQCIEMSVE-TLGTTEETVNPPSD 187
Q + EE T+G+ EE+ + + ++ + E T+G EE ++
Sbjct: 422 QAKEATVVGQAEEATVDRAEEATVGQAEEATVGHTEKVTVDQAEEATVGQAEEATVGQAE 481
Query: 188 QQCIEMSEE-TLSQPSNQ---QCIEMT-------------EETLGRMEESPCPPSNQQCI 230
+ ++ +E+ T+ Q Q E T E T+G+ EE+ + + +
Sbjct: 482 EATVDWAEKPTVGQAEEATVGQAEEATVGHTEKVTVDQAEEATVGQAEEATVGHTEKVTV 541
Query: 231 EMSDE-TLGTTEETVNPPSDQQCIEMSEE---------TLSQPSNQQCNQMAEETLGRME 280
+ ++E T+G EE +++ ++ +EE T+ Q + E T+G+ E
Sbjct: 542 DHAEEATVGQAEEATVGQAEKVTVDHAEEATVGQAEEATVGQAEKVTVDHAEEATVGQAE 601
Query: 281 ESLCPPSNQQCIEMTEE-TLGRTEETVN 307
E+ + + ++ EE T+ + EE ++
Sbjct: 602 EATVGQAEKVTVDQAEEPTVDQAEEAIS 629
>sp|Q55BA5|DCC1_DICDI Probable sister chromatid cohesion protein DCC1 OS=Dictyostelium
discoideum GN=DDB_G0271400 PE=3 SV=1
Length = 376
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 22/194 (11%)
Query: 703 LLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDH 762
L++ L +Y F++L IL+ +W D I + + A P I+
Sbjct: 152 LIYKNRYIVLSENYEFKILELILSEATIGAWKLDNIPIDKCIENIRA--PEFIIKHCLQL 209
Query: 763 YMVEST-------------DKTNQNGEPYYCLIE-DKICRVIGEALLRPTEK--FILNDF 806
Y + + + N + C ++ +K+C + LL + K DF
Sbjct: 210 YSKQKSPTNSGGGGEEIKGGGGDDNNDENICSLDFNKVCIFRAKQLLTLSNKSNMKFEDF 269
Query: 807 LTVWQASVPEGLKTNLKQLEGLAFVRQSS----KPVVVQYFPEVNLSEDIKTRIDQLFQV 862
+ W+ ++P ++ N L+G+A + SS K V++ E L K R +LFQ+
Sbjct: 270 MDNWKDTLPIEIQPNFSMLKGIAILIPSSSTNPKEKSVKFINESILPTIPKARFKELFQI 329
Query: 863 QDKWTLEDIRPYIE 876
+W+++DI P+I+
Sbjct: 330 STRWSIDDIEPFIK 343
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 393 KLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLI 444
+ +E Q ++ +I+ +++ +G + D VLCT +TF ++ TSNS+ L+
Sbjct: 24 RFLEANQEILDQIKNNKKLVIKGSLTDEAVLCTDDKTFTIRAGHTSNSMLLV 75
>sp|P24587|AKAP5_RAT A-kinase anchor protein 5 OS=Rattus norvegicus GN=Akap5 PE=2 SV=2
Length = 714
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/289 (21%), Positives = 119/289 (41%), Gaps = 30/289 (10%)
Query: 25 GRKDGRMEESLCPPSNQQCIEMSDETLGTTEETVN-PPIDQQCNPMAEE-TLGRMEESLC 82
G+ DGR + + + + LG EE + D+ AEE T+G EE+
Sbjct: 285 GKDDGRRKTAAEEKKSGET------ALGQAEEASSVSQADKSVLSQAEEATVGHTEEATV 338
Query: 83 PPSNQQCIEMSDETLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQ 142
+ Q E L EE + E +LSQ + SQ+ E +SQ
Sbjct: 339 IQAQSQAKEGK---LSQAEEAT-------VAQAKETVLSQAEEVKLSQIEEPAISQAKKA 388
Query: 143 QCIEMTEETLGRTEESLCPPSNQQCIEMSVE-TLGTTEETVNPPSDQQCIEMSEE-TLSQ 200
+ E + + EE++ + + + + E T+G E+T +++ + +EE T+ Q
Sbjct: 389 TVGQAKEAYVSQAEEAIVGHTEKATMGQAEEATVGHIEKTTVGQAEEATVGQAEEATVGQ 448
Query: 201 PSNQQCIEMTEETLGRMEESPCPPSNQQCI-EMSDETLGTTEETVNPPSDQQCIEMSEE- 258
+ E T+G+ EE+ + + + + T+G EE + +++ + +EE
Sbjct: 449 AEEATVGQAEEATVGQAEEATVGQAGEATVSHIEKTTVGQAEEAIVGQAEEATVGQAEEA 508
Query: 259 --------TLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEETL 299
T+ Q +Q E T+G+ EE+ + + + EE +
Sbjct: 509 TVGQAEEATVGQAEEATVDQAEEATVGQAEEATVGQAGEAAVGQAEEAI 557
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 120/283 (42%), Gaps = 37/283 (13%)
Query: 27 KDGRM---EESLCPPSNQQCIEMSDET-LGTTEETVNPPIDQQCNPMAEETLGRMEESLC 82
K+G++ EE+ + + + ++E L EE P I Q T+G+ +E+
Sbjct: 346 KEGKLSQAEEATVAQAKETVLSQAEEVKLSQIEE---PAISQAKKA----TVGQAKEAYV 398
Query: 83 PPSNQQCIEMSDE-TLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPN 141
+ + + +++ T+G EE ++ + AEE Q E T+ Q
Sbjct: 399 SQAEEAIVGHTEKATMGQAEEATVGHIEKTTVGQAEEAT-------VGQAEEATVGQAEE 451
Query: 142 QQCIEMTEETLGRTEESLCPPSNQQCI-EMSVETLGTTEETVNPPSDQQCIEMSEETLSQ 200
+ E T+G+ EE+ + + + + T+G EE + +++ + +EE
Sbjct: 452 ATVGQAEEATVGQAEEATVGQAGEATVSHIEKTTVGQAEEAIVGQAEEATVGQAEEA--- 508
Query: 201 PSNQQCIEMTEETLGRMEESPCPPSNQQCIEMSDE-TLGTTEETVNPPSDQQCIEMSEET 259
T+G+ EE+ + + ++ ++E T+G EE + + + +EE
Sbjct: 509 ------------TVGQAEEATVGQAEEATVDQAEEATVGQAEEATVGQAGEAAVGQAEEA 556
Query: 260 L-SQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEETLGR 301
+ +Q Q E T+G+ E++ + + + EET+ R
Sbjct: 557 IVAQAEEATVGQAGEATVGQAEKATVGQAEEPIVGQAEETVLR 599
Score = 34.3 bits (77), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 5/159 (3%)
Query: 522 TLSTTEEILSPQSNKQSIEMTKE-TLDLTSNRQCNQMSEETVCLPSNQQCIEMTEETLGR 580
T+ EE Q+ + ++ +E T+ Q E TV + + T+G+
Sbjct: 429 TVGQAEEATVGQAEEATVGQAEEATVGQAEEATVGQAEEATVGQAGEATVSHIEKTTVGQ 488
Query: 581 MEESLCPPSNQQCIEISDE-TLGTTEE-TVNPPTDQQCNQMTEETLGRTEESLCPPSNQQ 638
EE++ + + + ++E T+G EE TV + +Q E T+G+ EE+ + +
Sbjct: 489 AEEAIVGQAEEATVGQAEEATVGQAEEATVGQAEEATVDQAEEATVGQAEEATVGQAGEA 548
Query: 639 CIEMSDETL--GTTEETVNPPTDQQCIEISDETLGTTEE 675
+ ++E + E TV + + T+G EE
Sbjct: 549 AVGQAEEAIVAQAEEATVGQAGEATVGQAEKATVGQAEE 587
Score = 33.1 bits (74), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 51/269 (18%), Positives = 108/269 (40%), Gaps = 9/269 (3%)
Query: 119 ILSQPLNQQWSQMSEETLSQPPNQQCIEMTEETLGRTEESLCPPSNQQCIEMSVET-LGT 177
+LSQ E T+ Q +Q E L + EE+ + + + + E L
Sbjct: 321 VLSQAEEATVGHTEEATVIQAQSQ----AKEGKLSQAEEATVAQAKETVLSQAEEVKLSQ 376
Query: 178 TEETVNPPSDQQCIEMSEETLSQPSNQQCIEMTEE-TLGRMEESPCPPSNQQCIEMSDE- 235
EE + + + ++E + + + TE+ T+G+ EE+ + + ++E
Sbjct: 377 IEEPAISQAKKATVGQAKEAYVSQAEEAIVGHTEKATMGQAEEATVGHIEKTTVGQAEEA 436
Query: 236 TLGTTEETVNPPSDQQCIEMSEE-TLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEM 294
T+G EE +++ + +EE T+ Q Q E T+ +E++ + + +
Sbjct: 437 TVGQAEEATVGQAEEATVGQAEEATVGQAEEATVGQAGEATVSHIEKTTVGQAEEAIVGQ 496
Query: 295 TEE-TLGRTEETVNPPTDQQCIEMAEEILTPPINQQWSQMSEETLSQPSNQQFIKMTEDT 353
EE T+G+ EE ++ + AEE + +EE + + + E+
Sbjct: 497 AEEATVGQAEEATVGQAEEATVGQAEEATVDQAEEATVGQAEEATVGQAGEAAVGQAEEA 556
Query: 354 LYERTVQDSKVVIAHAKLTEDELCPITQA 382
+ + + + A + + E + QA
Sbjct: 557 IVAQAEEATVGQAGEATVGQAEKATVGQA 585
>sp|P25559|DCC1_YEAST Sister chromatid cohesion protein DCC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DCC1 PE=1 SV=2
Length = 380
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 803 LNDFLTVWQASVPEGL--KTNLKQLEGLAFVRQSSKPV--VVQYFPEVNLSEDIKTRIDQ 858
+++FL W++ P ++ L G F KP VQY + L D K R
Sbjct: 277 IDEFLIKWKSLFPPFFPCDIDIDMLRGYHF-----KPTDKTVQYIAKSTLPMDPKERFKV 331
Query: 859 LFQVQDKWTLEDIRPYIE 876
LF++Q +W LEDI+P IE
Sbjct: 332 LFRLQSQWDLEDIKPLIE 349
>sp|P39846|PPSB_BACSU Plipastatin synthase subunit B OS=Bacillus subtilis (strain 168)
GN=ppsB PE=1 SV=1
Length = 2560
Score = 38.1 bits (87), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 22/167 (13%)
Query: 277 GRMEESLCPPSNQQCIEMTEETLGRTEETVNPPTDQQCIEMAEEILTPPINQQWSQMSEE 336
G ++++L CI +T + ++ + PP +QQ I++ E P +N+ Q+ EE
Sbjct: 425 GHLKQAL------DCI-LTNPDVAVSDINIVPPEEQQVIQLFNETERPYVNKTIPQLFEE 477
Query: 337 TLSQPSNQQFIKMTEDTLYERTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQSLKLME 396
+ +KM + R +Q IAHA + + A+ MG S ME
Sbjct: 478 QAHKTPEAAALKMGNECWTYRQLQVRANQIAHALIEKGVGSGDIVAVMMGRS------ME 531
Query: 397 IPQSLISEIQQGNRVLFRGDIGDP--PVLCTQRQTFQVKEAETSNSL 441
+P +L+ + G + P P +R +F +K+++ + L
Sbjct: 532 MPAALLGIWKAGGAYM-------PLDPHFPAERLSFLLKDSQAAQLL 571
>sp|Q9ZNT9|FIS2_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2
OS=Arabidopsis thaliana GN=FIS2 PE=1 SV=3
Length = 755
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 43/230 (18%), Positives = 98/230 (42%), Gaps = 11/230 (4%)
Query: 32 EESLCPPSNQQCIEMSDETLGTTEETVNPPIDQQCNPMAEETLGRMEESLCPPSNQQCIE 91
++ + P +E +E+ E+ ++ P + E T E+ PP + E
Sbjct: 311 DDDVSSPPRAHSLE-KNESTHVNEDNISSPPKAHSSKKNESTHMNDEDVSFPPRTRSSKE 369
Query: 92 MSDETLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIEMTEET 151
SD L TT+ + P++ + ++ Q +++ + +QP + E +
Sbjct: 370 TSD-ILTTTQPAIVEPSEPKVRRVSRR------KQLYAKRYKARETQPAIAESSE--PKV 420
Query: 152 LGRTEESLCPPSNQQCIEMSVETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQCIEMTE 211
L +E++ P +E + + L TT+ + S+ + +++E +S + +
Sbjct: 421 LHVNDENVSSPPEAHSLEKASDILTTTQPAIAESSEPKVPHVNDENVSSTPRAHSSKKNK 480
Query: 212 ETLGRMEESPCPPSNQQCIEMSDETLGTTEETVNPPSDQQCIEMSEETLS 261
T ++ P PP + + SD L TT+ T+ S+ + ++++ +S
Sbjct: 481 STRKNVDNVPSPPKTRSSKKTSD-ILTTTQPTIAESSEPKVRHVNDDNVS 529
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 317,274,302
Number of Sequences: 539616
Number of extensions: 13139657
Number of successful extensions: 33527
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 353
Number of HSP's that attempted gapping in prelim test: 32030
Number of HSP's gapped (non-prelim): 1399
length of query: 876
length of database: 191,569,459
effective HSP length: 126
effective length of query: 750
effective length of database: 123,577,843
effective search space: 92683382250
effective search space used: 92683382250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)