Query psy7139
Match_columns 876
No_of_seqs 161 out of 195
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 19:08:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09724 DUF2036: Uncharacteri 100.0 4.3E-73 9.3E-78 589.5 32.0 320 391-876 1-325 (325)
2 KOG0798|consensus 100.0 1.1E-72 2.4E-77 597.0 21.5 345 360-876 2-351 (380)
3 PF12419 DUF3670: SNF2 Helicas 54.1 30 0.00064 33.9 5.7 42 663-726 82-123 (141)
4 PRK00135 scpB segregation and 26.2 75 0.0016 33.1 3.7 60 651-722 17-77 (188)
5 PF04079 DUF387: Putative tran 26.0 41 0.00088 34.1 1.8 62 651-725 11-72 (159)
6 COG3012 Uncharacterized protei 25.0 41 0.00088 34.4 1.6 16 701-716 114-129 (151)
7 PF04801 Sin_N: Sin-like prote 24.6 2.8E+02 0.006 31.6 8.1 70 666-765 300-377 (421)
8 cd03084 phosphohexomutase The 23.0 7.2E+02 0.016 27.3 10.6 147 696-854 182-346 (355)
9 TIGR00281 segregation and cond 20.4 1.2E+02 0.0027 31.6 4.0 61 651-723 14-76 (186)
10 KOG4705|consensus 19.6 2.2E+02 0.0049 32.0 5.8 85 703-793 78-169 (303)
No 1
>PF09724 DUF2036: Uncharacterized conserved protein (DUF2036); InterPro: IPR019128 Sister chromatid cohesion protein DCC1 is a component of the RFC-like complex CTF18-RFC. This complex is required for the efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighbouring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA [, ].
Probab=100.00 E-value=4.3e-73 Score=589.49 Aligned_cols=320 Identities=30% Similarity=0.552 Sum_probs=282.5
Q ss_pred ceEEEecChhhHHHHhcCCeEEEccCCCCCeEEeeCCCeEEEEEEecccceEEecCCCCCCCCCccCCChhhHHHHHHhc
Q psy7139 391 SLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYFPDHPRIKENNTETERELVRQN 470 (876)
Q Consensus 391 ~~kLLEl~~~LL~~Ie~G~~l~fRG~~~D~AVLCT~~kTY~VK~aeTSNSLLLi~~~~~p~~~~~~e~nt~~er~l~~~~ 470 (876)
+|||||||++|++.|++|++|+|||+++|+|||||++|||+||+|+|||||||+++...++.....+.+.
T Consensus 1 ~ykLLEl~~~Ll~~l~~~~~L~iKg~~~~~aVLCT~~kTy~vrq~~~SNsllL~~~~~~~~~~~~~~~~~---------- 70 (325)
T PF09724_consen 1 EYKLLELPPELLEALESGESLTIKGDPDDDAVLCTDDKTYSVRQVNTSNSLLLMPPCQPPDDSDPNDDSS---------- 70 (325)
T ss_pred CcEEEECCHHHHHHHhCCCeEEEecCCCCceEEcCCCCcEEEEEeecCceeEEcCCCCCccccccccccc----------
Confidence 5999999999999999999999999999999999999999999999999999999876543211000000
Q ss_pred ccccccCCchhhhhhhhhhcCCCcccccccccccccCCCCChhhhhhhhhcccccchhccCccccchhhhhhhhhccccc
Q psy7139 471 KKKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQRIKMTEETLSTTEEILSPQSNKQSIEMTKETLDLTS 550 (876)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~pp~~~~~~ik~~~~~l~~~~~~~~~~s~~~~i~~~~~~~dl~~ 550 (876)
.. + +..-.+++
T Consensus 71 ----------------------------------~~---------------------------------~--~~~~~~~~ 81 (325)
T PF09724_consen 71 ----------------------------------TN---------------------------------E--RTDPTLVV 81 (325)
T ss_pred ----------------------------------cc---------------------------------c--cccCceEE
Confidence 00 0 00112344
Q ss_pred ccccccceeeeecCCChHHHHhhhHhhcccccCCCCCCCchhhhhcccCCCcccccccCCCCchhhhhhHHHHhcccccc
Q psy7139 551 NRQCNQMSEETVCLPSNQQCIEMTEETLGRMEESLCPPSNQQCIEISDETLGTTEETVNPPTDQQCNQMTEETLGRTEES 630 (876)
Q Consensus 551 ~~~~~~~lEl~~~~PrL~kL~~L~~~~~~L~e~~Y~gpe~e~~~~~~d~~~yT~e~~~~~~~~~~~~~~~eeLl~~~~~~ 630 (876)
.+.+++|||++++.|++++|+.| |+...|.|++.+.... .+...|| +++|+++
T Consensus 82 ~~~~~~~~El~~~~p~l~~L~~l------l~~~~y~g~~~e~~~~-~~~~~~t----------------~~~L~~~---- 134 (325)
T PF09724_consen 82 IASCSSYLELRPIAPRLNKLREL------LRLPPYDGEEDEESND-GNKSDYT----------------LDELLDN---- 134 (325)
T ss_pred EEEeccEEEEEecCCcHHHHHHH------hcCCcccCCccccccc-ccccccc----------------HHHHHHh----
Confidence 58899999999999999999999 9999999988776422 2244599 9999999
Q ss_pred CCCCCccccccccccccCccccccCCCCCCcccccCHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEcCEEE
Q psy7139 631 LCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIR 710 (876)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~IQASdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywR 710 (876)
||||++||.++|.+++ | |+|||+||
T Consensus 135 --------------------------------vq~S~~El~~~l~~l~-----------~------------~ei~G~~r 159 (325)
T PF09724_consen 135 --------------------------------VQASEAELRQALKELG-----------A------------CEIDGYWR 159 (325)
T ss_pred --------------------------------CCccHHHHHHHHHHCC-----------E------------EEECCEEE
Confidence 9999999999999999 9 99999999
Q ss_pred EeChHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHhhc-CCCHHHHHHHHHHccCccccccCCCCCCeEEechhHHHHH
Q psy7139 711 TLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEA-LVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRV 789 (876)
Q Consensus 711 LLSpsYLtrILdlILtlIdeESWsLdkVpldetvEALee-~yPreVIEhVLrkYGtpS~~k~~ddGd~~wkLDEdKICRw 789 (876)
+||++|+.++|++||+.++++||+++.++++++.++|.+ .||++|++|||++||+ ..+++ ..+|+||++|||||
T Consensus 160 ~Ls~~~~~~~L~~il~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~v~~~vl~~~~~----~~~~~-~~~~~Ld~~ki~~~ 234 (325)
T PF09724_consen 160 LLSPSYLFEILDLILTSAVEESWDLDQFPVEEVVEALEEDEYPREVVEHVLRKFGT----REDDD-DSWWKLDEDKICRW 234 (325)
T ss_pred ECCHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHhcccCCCHHHHHHHHHHhCC----CccCC-CceEEcCHHHHHHH
Confidence 999999999999999999999999999999999999986 6999999999999998 32221 45799999999999
Q ss_pred HHHHhcCCCC--CCCHHHHHHHHHHhCCC--CccccccccceeEEEeCCCCCcEEEEecCCCCcccHHHHHHHHHhcCCC
Q psy7139 790 IGEALLRPTE--KFILNDFLTVWQASVPE--GLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDK 865 (876)
Q Consensus 790 fAiqLLraa~--KfnLEEFMEtWKsSVPE--Gm~pDLEmLKGlALVd~sSsp~tIrYFpesDLP~DPkERFkeLFkIRpK 865 (876)
||+++|+++. +|+++|||++||++||+ ++.++++||+|+|+++..+.+++|+||++++||.||++||++||++|+|
T Consensus 235 ~a~~lL~~~~~~~~~~~eFl~~Wk~~lP~~~~~~~~l~~L~G~~~~~~~~~~~~I~y~~~~~Lp~dp~~Rf~~LF~~~~k 314 (325)
T PF09724_consen 235 FAIQLLKAHASSSFPLDEFLEAWKSSLPEFFGMDPDLEMLRGLALIDDRPSPTTIQYFPESDLPTDPKERFKELFKLRPK 314 (325)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhCCCcCCCCCCHHHhCCeeEeecCCCCCEEEEecHHHCCCCHHHHHHHHHhcCCC
Confidence 9999999987 99999999999999999 7778999999999998889999999999999999999999999999999
Q ss_pred CChhhcccccC
Q psy7139 866 WTLEDIRPYIE 876 (876)
Q Consensus 866 WTlEEIePYIe 876 (876)
|+++||+|||+
T Consensus 315 W~~~ei~Pyi~ 325 (325)
T PF09724_consen 315 WTLDEIEPYIE 325 (325)
T ss_pred CCHHHHHHhhC
Confidence 99999999997
No 2
>KOG0798|consensus
Probab=100.00 E-value=1.1e-72 Score=597.03 Aligned_cols=345 Identities=28% Similarity=0.474 Sum_probs=312.6
Q ss_pred HHHHHHHHHcCCCccccCCcceEEEecCC----CCceEEEecChhhHHHHhcCCeEEEccCCCCCeEEeeCCCeEEEEEE
Q psy7139 360 QDSKVVIAHAKLTEDELCPITQAIYMGSS----MQSLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTFQVKEA 435 (876)
Q Consensus 360 ~d~~~~~~~AKl~~~~l~~~~q~l~f~~~----~~~~kLLEl~~~LL~~Ie~G~~l~fRG~~~D~AVLCT~~kTY~VK~a 435 (876)
++|++..+||||+..+|.+++++++|+++ .++|.||+++.+++..+.+|.+|+|||+.+|+|||||++|||+||.|
T Consensus 2 ~ev~a~~~~~~L~~~~~~~~~~~l~f~P~~~~~s~~~~LLeld~~~i~~~~eg~~L~fkgd~de~aVLCT~dkTy~vK~~ 81 (380)
T KOG0798|consen 2 EEVDAQFTFAKLEANELLPRSILLKFPPEYSDISSEFLLLELDDDLIQQLEEGHSLVFKGDFDEDAVLCTDDKTYAVKQV 81 (380)
T ss_pred cchhhhhhhhhhhhcccchhhhcccCCCccccchhhhhhhcccHHHhhchhcCceEEEecCCccceEEecCCceeeeeee
Confidence 68999999999999999999999999976 58999999999999999999999999999999999999999999999
Q ss_pred ecccceEEecCCCCCCCCCccCCChhhHHHHHHhcccccccCCchhhhhhhhhhcCCCcccccccccccccCCCCChhhh
Q psy7139 436 ETSNSLTLIRGLYFPDHPRIKENNTETERELVRQNKKKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQR 515 (876)
Q Consensus 436 eTSNSLLLi~~~~~p~~~~~~e~nt~~er~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~pp~~~~~~ 515 (876)
++|||+||+|++.++++...+. + +
T Consensus 82 ~~SNs~LLip~~~~~~~~~~~p-~--------------------------------~----------------------- 105 (380)
T KOG0798|consen 82 EQSNSVLLIPELKPADDVLTDP-D--------------------------------L----------------------- 105 (380)
T ss_pred cccceEEEecCCcCccccccCc-C--------------------------------C-----------------------
Confidence 9999999999998775432110 0 0
Q ss_pred hhhhhcccccchhccCccccchhhhhhhhhcccccccccccceeeeecCCChHHHHhhhHhhcccccCCCCCCCchhhhh
Q psy7139 516 IKMTEETLSTTEEILSPQSNKQSIEMTKETLDLTSNRQCNQMSEETVCLPSNQQCIEMTEETLGRMEESLCPPSNQQCIE 595 (876)
Q Consensus 516 ik~~~~~l~~~~~~~~~~s~~~~i~~~~~~~dl~~~~~~~~~lEl~~~~PrL~kL~~L~~~~~~L~e~~Y~gpe~e~~~~ 595 (876)
.+...+..+++.. |+|++++.|++.+|+++ |++.+|.|++++.+.+
T Consensus 106 --------------------------~~~~~~~~~f~~~--~~E~re~~p~l~klk~i------l~~~~~~~~e~~~e~~ 151 (380)
T KOG0798|consen 106 --------------------------SKNYIDTKIFAFL--EFELREIYPRLFKLKKI------LYENELDWDEKEVELE 151 (380)
T ss_pred --------------------------CCccccceeeccc--eeeeeehhhhhhhhhhh------hhcCCCCCcHHHhhhc
Confidence 0111223333333 99999999999999999 9999999999998643
Q ss_pred cccCCCcccccccCCCCchhhhhhHHHHhccccccCCCCCccccccccccccCccccccCCCCCCcccccCHHHHHHHHH
Q psy7139 596 ISDETLGTTEETVNPPTDQQCNQMTEETLGRTEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEISDETLGTTEE 675 (876)
Q Consensus 596 ~~d~~~yT~e~~~~~~~~~~~~~~~eeLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~IQASdeEL~~~L~ 675 (876)
. ...|| ++||++. ||||++|++.+|+
T Consensus 152 ~--~~~yT----------------~~dLL~s------------------------------------VqaS~eE~~~~Lq 177 (380)
T KOG0798|consen 152 S--NSVYT----------------LEDLLNS------------------------------------VQASREEVMSGLQ 177 (380)
T ss_pred c--ccccc----------------HHHHHHh------------------------------------ccccHHHHHHHHH
Confidence 3 22299 9999999 9999999999999
Q ss_pred HhCCCCccchhhhhhccccccCCCeeeEEEcCEEEEeChHHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHhhc-CCCHH
Q psy7139 676 TVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTETKVTLEA-LVPAE 754 (876)
Q Consensus 676 ~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywRLLSpsYLtrILdlILtlIdeESWsLdkVpldetvEALee-~yPre 754 (876)
+++ | +++||+||+||++|+.++|++|+.++++++|+++.++...++.++.+ .||++
T Consensus 178 ~l~-----------a------------~~~dG~~riLs~~Y~~~iL~~il~l~~~~~wsf~~v~~~~~v~~l~~dEFpe~ 234 (380)
T KOG0798|consen 178 KLF-----------A------------IVKDGFLRILSPDYLCKILNMILVLADEESWSFDEVDLKELVNALKDDEFPED 234 (380)
T ss_pred hcC-----------c------------EeecCEEEEecHHHHHHHHHHHHHHhhhhcccccchhHHHHhhccccccCcHH
Confidence 999 8 99999999999999999999999999999999999999999999976 46999
Q ss_pred HHHHHHHHccCccccccCCCCCCeEEechhHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCCCccccccccceeEEEeCC
Q psy7139 755 IVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQS 834 (876)
Q Consensus 755 VIEhVLrkYGtpS~~k~~ddGd~~wkLDEdKICRwfAiqLLraa~KfnLEEFMEtWKsSVPEGm~pDLEmLKGlALVd~s 834 (876)
++.|||++||. +.++.++ +|+|++.+||||+|++||+...+|++++||+.||+++|+||.+++++|+|++++++.
T Consensus 235 ~v~~vl~~f~~----k~n~~~~-kf~l~~~li~r~~ar~iL~~~~~~~l~eF~e~W~~~lP~gm~~~~~~L~gl~l~~k~ 309 (380)
T KOG0798|consen 235 SVEHVLRSFGI----KDNEEPK-KFRLDEELICRWYARQILRGIVSFSLDEFMELWKKRLPYGMPCDIKQLEGLGLLDKG 309 (380)
T ss_pred HHHHHHHHhcc----cccCCCC-ccccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCCCcChhhcccccccccC
Confidence 99999999998 4434333 799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCcccHHHHHHHHHhcCCCCChhhcccccC
Q psy7139 835 SKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876 (876)
Q Consensus 835 Ssp~tIrYFpesDLP~DPkERFkeLFkIRpKWTlEEIePYIe 876 (876)
+.++.|+||.+++||++|++||+.||++|+||+++||.|||+
T Consensus 310 ~~~~~i~~la~~~LP~~pkeRf~~LF~~r~~W~~edl~Pyi~ 351 (380)
T KOG0798|consen 310 PFSKLILYLAVEDLPTTPKERFSVLFELRSRWTMEDLEPYIE 351 (380)
T ss_pred CcchhhhhhhHhhcCCCHHHHHHHHHHHHhhhhHHHhhHHHH
Confidence 999999999999999999999999999999999999999985
No 3
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=54.07 E-value=30 Score=33.87 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=36.1
Q ss_pred cccCHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEcCEEEEeChHHHHHHHHHHHH
Q psy7139 663 IEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILN 726 (876)
Q Consensus 663 IQASdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywRLLSpsYLtrILdlILt 726 (876)
...|++||.+-.+.-. .++.|+|+|..+|++-+.+++..+-.
T Consensus 82 ~~Ls~eEf~~L~~~~~----------------------~LV~~rg~WV~ld~~~l~~~~~~~~~ 123 (141)
T PF12419_consen 82 EELSEEEFEQLVEQKR----------------------PLVRFRGRWVELDPEELRRALAFLEK 123 (141)
T ss_pred EECCHHHHHHHHHcCC----------------------CeEEECCEEEEECHHHHHHHHHHHHh
Confidence 5689999999887665 35999999999999999999888766
No 4
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=26.24 E-value=75 Score=33.07 Aligned_cols=60 Identities=12% Similarity=0.259 Sum_probs=42.3
Q ss_pred ccc-cCCCCCCcccccCHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEcCEEEEeChHHHHHHHH
Q psy7139 651 EET-VNPPTDQQCIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLS 722 (876)
Q Consensus 651 ~~~-~~~~~l~q~IQASdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywRLLSpsYLtrILd 722 (876)
.+| |+...|...+..+..++..+|..+. +-|+. ..-|++.++++|.||+....=...++.
T Consensus 17 g~pgls~~~La~~l~~~~~~v~~~l~~L~----------~~y~~--~~~gi~i~~~~~~y~l~tk~e~~~~v~ 77 (188)
T PRK00135 17 GEEGLSLEQLAEILELEPTEVQQLLEELQ----------EKYEG--DDRGLKLIEFNDVYKLVTKEENADYLQ 77 (188)
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHH----------HHHhh--CCCCEEEEEECCEEEEEEcHHHHHHHH
Confidence 454 7888888888999999999999997 12222 244999999998887765433333333
No 5
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ]. The SMC-Scp complex appears to be similar to the MukB-MukE-Muk-F complex in Escherichia coli [], where MukB (IPR007406 from INTERPRO) is the homologue of SMC. ScpA and ScpB have little sequence similarity to MukE (IPR007385 from INTERPRO) or MukF (IPR005582 from INTERPRO), they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. In general scpA and scpB form an operon in most bacterial genomes. Flanking genes are highly variable suggesting that the operon has moved throughout evolution. Bacteria containing an smc gene also contain scpA or scpB but not necessarily both. An exception is found in Deinococcus radiodurans, which contains scpB but neither smc nor scpA. In the archaea the gene order SMC-ScpA is conserved in nearly all species, as is the very short distance between the two genes, indicating co-transcription of the both in different archaeal genera and arguing that interaction of the gene products is not confined to the homologues in Bacillus subtilis. It would seem probable that, in light of all the studies, SMC, ScpA and ScpB proteins or homologues act together in chromosome condensation and segregation in all prokaryotes []. ; GO: 0051304 chromosome separation; PDB: 1T6S_B 2Z99_A.
Probab=26.01 E-value=41 Score=34.05 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=40.8
Q ss_pred ccccCCCCCCcccccCHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEcCEEEEeChHHHHHHHHHHH
Q psy7139 651 EETVNPPTDQQCIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHIL 725 (876)
Q Consensus 651 ~~~~~~~~l~q~IQASdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywRLLSpsYLtrILdlIL 725 (876)
.+||+...+...+. |..++...|.++. +-+ ++..-|++..+++|.||+.-..=....+..++
T Consensus 11 ~~pvs~~~La~~l~-~~~~v~~~l~~L~----------~~y--~~~~~gl~l~~~~~~y~l~tk~~~~~~v~~~~ 72 (159)
T PF04079_consen 11 GEPVSIEELAEILG-SEDEVEEALEELQ----------EEY--NEEDRGLELVEVGGGYRLQTKPEYAEYVEKLF 72 (159)
T ss_dssp SS-B-HHHHHHHCT--HHHHHHHHHHHH----------HHH--HHCT-SEEEEEETTEEEEEE-GGGHHHHHHHH
T ss_pred CCCCCHHHHHHHhC-CHHHHHHHHHHHH----------HHh--ccCCCCEEEEEECCEEEEEEhHHHHHHHHHHh
Confidence 45677777777788 9999999999997 222 23455999999999998876544444444443
No 6
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.02 E-value=41 Score=34.44 Aligned_cols=16 Identities=25% Similarity=0.330 Sum_probs=14.2
Q ss_pred eeEEEcCEEEEeChHH
Q psy7139 701 RFLLFPGYIRTLDHDY 716 (876)
Q Consensus 701 ~~cEIDGywRLLSpsY 716 (876)
||+.|||+|+.||+..
T Consensus 114 rFvk~ngrWyyiDgtv 129 (151)
T COG3012 114 RFVKINGRWYYIDGTV 129 (151)
T ss_pred hheEECCEEEEECCCC
Confidence 6999999999999864
No 7
>PF04801 Sin_N: Sin-like protein conserved region; InterPro: IPR006886 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. RNA polymerase III (Pol III) is a complex consisting of 17 subunits, which synthesizes small RNAs, such as 5S rRNA and tRNAs. Pol III is essential for efficient transcription from both the type 2 VAI and type 3 U6 RNA polymerase III promoters and plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Subunit c5 is a specific peripheric component of RNA polymerase III complex. ; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=24.58 E-value=2.8e+02 Score=31.60 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEcCEEEEeC--------hHHHHHHHHHHHHHHhhCCCCCCC
Q psy7139 666 SDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLD--------HDYNFRMLSHILNLVDSNSWSADQ 737 (876)
Q Consensus 666 SdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywRLLS--------psYLtrILdlILtlIdeESWsLdk 737 (876)
|+++|..+|..+ | +-+.|.|.+=| ..++.++=++||-.+..+.+
T Consensus 300 ~~~~lL~~L~~~------------A------------vLV~G~WV~kS~ll~~~~~~e~~~~aRD~iL~~F~~~~~---- 351 (421)
T PF04801_consen 300 TDEELLRALQQV------------A------------VLVQGNWVVKSELLYPDVPAEQLCRARDYILLLFTKSRY---- 351 (421)
T ss_pred hHHHHHHHHHhh------------e------------EEEeeeEEEehhhccCCCcchhhhhhHHHHHHHhcCCCc----
Confidence 467888888777 4 89999999876 34788889999988877643
Q ss_pred CCHHHHHHHhhcCCCHHHHHHHHHHccC
Q psy7139 738 IDRTETKVTLEALVPAEIVDFLFDHYMV 765 (876)
Q Consensus 738 VpldetvEALee~yPreVIEhVLrkYGt 765 (876)
|....+.... .+|..-+..||..++.
T Consensus 352 v~r~~l~~~~--~l~~~~~~eiL~~~a~ 377 (421)
T PF04801_consen 352 VKRKELMSAT--KLPPEDVKEILKEIAV 377 (421)
T ss_pred eeHHHhhhhc--CCCHHHHHHHHHHHhh
Confidence 6666655433 5889999999999997
No 8
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=23.04 E-value=7.2e+02 Score=27.32 Aligned_cols=147 Identities=15% Similarity=0.120 Sum_probs=75.9
Q ss_pred cCCCeeeEEEcCEEEEeChHHHHHHHHHHHHHHh-hCCCCCCCCCHHHHHHHhhc----------CCCHHHHHHHHHH--
Q psy7139 696 SSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVD-SNSWSADQIDRTETKVTLEA----------LVPAEIVDFLFDH-- 762 (876)
Q Consensus 696 ~~~~~~~cEIDGywRLLSpsYLtrILdlILtlId-eESWsLdkVpldetvEALee----------~yPreVIEhVLrk-- 762 (876)
..=|=|+..+|++.+.|+++.+.-++-..+.... ..+.=...+.-..+++.+.+ .=+..|.+.+.+.
T Consensus 182 DgDgDRl~~vd~~G~~l~~d~~~al~~~~l~~~~~~~~~vv~~v~ss~~i~~ia~~~g~~v~~t~~G~~~i~~~m~~~~~ 261 (355)
T cd03084 182 DGDADRLIVVDENGGFLDGDELLALLAVELFLTFNPRGGVVKTVVSSGALDKVAKKLGIKVIRTKTGFKWVGEAMQEGDV 261 (355)
T ss_pred cCCCceeEEECCCCceeCHhHHHHHHHHHHHHhcCCCCCEEEEccchHHHHHHHHHcCCcEEEecCcHHHHHHHHHhcCc
Confidence 3345588999999999999988877765553210 01111111221222222211 0123344444321
Q ss_pred -ccCccccccCCCCCC---eEEechhHHHHHHHH-HhcCCCCCCCHHHHHHHHHHhCCCCccccccccceeEEEeCCCCC
Q psy7139 763 -YMVESTDKTNQNGEP---YYCLIEDKICRVIGE-ALLRPTEKFILNDFLTVWQASVPEGLKTNLKQLEGLAFVRQSSKP 837 (876)
Q Consensus 763 -YGtpS~~k~~ddGd~---~wkLDEdKICRwfAi-qLLraa~KfnLEEFMEtWKsSVPEGm~pDLEmLKGlALVd~sSsp 837 (876)
||- ..+|.. .|.+..|.|....-. .+|.. .+.++.+-++ .+|..+....+ +.|+++++.++..
T Consensus 262 ~~gg------E~sg~~~~~~~~~~~Dgi~a~l~~le~la~-~~~~Ls~l~~----~~p~~~~~~~~-v~gW~lirps~te 329 (355)
T cd03084 262 VLGG------EESGGVIFPEFHPGRDGISAALLLLEILAN-LGKSLSELFS----ELPRYYYIRLK-VRGWVLVRASGTE 329 (355)
T ss_pred eEEe------cCcCCEEECCcCCCCCHHHHHHHHHHHHHH-hCCCHHHHHH----HhhHhcccccc-cceEEEEecCCCC
Confidence 221 011211 134555555443322 23332 2346665444 47777665533 3499999999999
Q ss_pred cEEEEecCCCCcccHHH
Q psy7139 838 VVVQYFPEVNLSEDIKT 854 (876)
Q Consensus 838 ~tIrYFpesDLP~DPkE 854 (876)
+.++...+..=+....+
T Consensus 330 p~~ri~~Ea~~~e~a~~ 346 (355)
T cd03084 330 PAIRIYAEADTQEDVEQ 346 (355)
T ss_pred cEEEEEEeeCCHHHHHH
Confidence 99999988874444333
No 9
>TIGR00281 segregation and condensation protein B. Shown to be required for chromosome segregation and condensation in B. subtilis.
Probab=20.44 E-value=1.2e+02 Score=31.56 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=39.4
Q ss_pred ccc-cCCCCCCcccccC-HHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEcCEEEEeChHHHHHHHHH
Q psy7139 651 EET-VNPPTDQQCIEIS-DETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSH 723 (876)
Q Consensus 651 ~~~-~~~~~l~q~IQAS-deEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywRLLSpsYLtrILdl 723 (876)
.+| |+...+...+..+ ..++...++.+. ..-+. .+-|++.++++|.||+.-..=....+..
T Consensus 14 g~pgls~~~La~il~~~~~~~~~~~l~~l~-----------~~~~~-~~~gl~l~~~~~~y~l~tk~e~~~~i~~ 76 (186)
T TIGR00281 14 GEPGVTLAELVRILGKEKAEKLNAIMELLE-----------DYLSR-DTAGIEIIKFGQSYSLVTKPAFADYIHR 76 (186)
T ss_pred CCCCCCHHHHHHHhCCCchHHHHHHHHHHH-----------HHHhc-CCCCEEEEEECCEEEEEEhHHHHHHHHH
Confidence 355 7777777777777 457777777776 32122 2459999999999987665433444433
No 10
>KOG4705|consensus
Probab=19.61 E-value=2.2e+02 Score=31.99 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=46.1
Q ss_pred EEEcCEEEEeChHHHHHHHHHHHHHHhhCCC-----CCCCCCHHHHHHH-h-hcCCCHHHHHHHHHHccCccccccCCCC
Q psy7139 703 LLFPGYIRTLDHDYNFRMLSHILNLVDSNSW-----SADQIDRTETKVT-L-EALVPAEIVDFLFDHYMVESTDKTNQNG 775 (876)
Q Consensus 703 cEIDGywRLLSpsYLtrILdlILtlIdeESW-----sLdkVpldetvEA-L-ee~yPreVIEhVLrkYGtpS~~k~~ddG 775 (876)
+.-||+.++--|= ..|-++|.+|....| +++.|.+++.+.. + .....+-+ .-+|++.+.- .+.. .+.
T Consensus 78 V~snG~ly~~TPv---DllfL~LpyLqK~~~~rkf~pld~V~ved~~~~~~~~e~l~pgl-lK~Lh~V~~v-k~~~-~~~ 151 (303)
T KOG4705|consen 78 VVSNGYLYVCTPV---DLLFLVLPYLQKLTWSRKFEPLDYVSVEDFIEHFRVSEVLSPGL-LKTLHRVCKV-KEPV-GSL 151 (303)
T ss_pred eecCCEEEEeccc---cHHHHHHHHHHHHhhhcccccccceehhhcchhHHHHHHhCccH-HHHHHHHHhc-CCCc-ccc
Confidence 3448998887651 233344444444444 3666777766665 2 11222222 2334444430 0011 112
Q ss_pred CCeEEechhHHHHHHHHH
Q psy7139 776 EPYYCLIEDKICRVIGEA 793 (876)
Q Consensus 776 d~~wkLDEdKICRwfAiq 793 (876)
..+|+||+.++..|+++.
T Consensus 152 ~K~Ykln~ektLkwL~rK 169 (303)
T KOG4705|consen 152 PKTYKLNEEKTLKWLLRK 169 (303)
T ss_pred hhhhhcCHHHHHHHHHHH
Confidence 347999999999999876
Done!