Query psy7139
Match_columns 876
No_of_seqs 161 out of 195
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 19:09:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9v_A Selenocysteine-specific 50.6 57 0.002 29.0 8.1 84 663-765 27-115 (135)
2 1t6s_A Conserved hypothetical 31.4 18 0.00062 35.3 1.8 61 651-723 20-82 (162)
3 3khe_A Calmodulin-like domain 27.5 1.4E+02 0.0047 26.6 6.8 117 664-816 56-189 (191)
4 2mys_C Myosin; muscle protein, 26.9 2.8E+02 0.0096 23.2 9.3 15 664-678 24-38 (149)
5 2z99_A Putative uncharacterize 25.0 30 0.001 35.4 2.2 64 650-725 27-90 (219)
6 1q80_A SCP, sarcoplasmic calci 21.5 2E+02 0.0067 25.1 6.5 17 798-814 142-158 (174)
7 1lva_A Selenocysteine-specific 20.7 2.7E+02 0.0091 28.1 8.0 82 663-763 27-113 (258)
8 1mby_A SAK, serine/threonine k 14.8 1E+02 0.0035 28.0 3.0 35 827-863 43-77 (88)
9 2sas_A Sarcoplasmic calcium-bi 14.6 5.9E+02 0.02 22.1 8.1 84 723-814 64-169 (185)
10 2qac_A Myosin A tail domain in 14.5 5.5E+02 0.019 21.7 7.9 15 664-678 31-45 (146)
No 1
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=50.64 E-value=57 Score=28.96 Aligned_cols=84 Identities=10% Similarity=0.142 Sum_probs=63.5
Q ss_pred cccCHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEc--CEEEEeChHHHHHHHHHHHHHHhh--CCCCCC-C
Q psy7139 663 IEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFP--GYIRTLDHDYNFRMLSHILNLVDS--NSWSAD-Q 737 (876)
Q Consensus 663 IQASdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEID--GywRLLSpsYLtrILdlILtlIde--ESWsLd-k 737 (876)
...|..++...|..+. + +-+++.++ +..++++.+|..++..-|+..+.. ...++. .
T Consensus 27 ~~l~~~~l~~~l~~l~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~yH~~~P~~~G 87 (135)
T 2v9v_A 27 ASLSLEETRKLLQSMA-----------A--------AGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHSRYPLRPG 87 (135)
T ss_dssp HTCCHHHHHHHHHHHH-----------H--------TTCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSSC
T ss_pred hCCCHHHHHHHHHHHH-----------h--------CCcEEEEecCCCeEEecHHHHHHHHHHHHHHHHHHHHhCCCccC
Confidence 6678889988888875 2 22347776 555579999999999999999887 233443 3
Q ss_pred CCHHHHHHHhhcCCCHHHHHHHHHHccC
Q psy7139 738 IDRTETKVTLEALVPAEIVDFLFDHYMV 765 (876)
Q Consensus 738 VpldetvEALee~yPreVIEhVLrkYGt 765 (876)
++.+++...+...++..++.++|+..-.
T Consensus 88 ~~keeLr~~~~~~~~~~~~~~ll~~l~~ 115 (135)
T 2v9v_A 88 LAREELRSRYFSRLPARVYQALLEEWSR 115 (135)
T ss_dssp EEHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 8889988877666799999999987643
No 2
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=31.45 E-value=18 Score=35.30 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=44.0
Q ss_pred ccccCCCCCCcccc--cCHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEcCEEEEeChHHHHHHHHH
Q psy7139 651 EETVNPPTDQQCIE--ISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSH 723 (876)
Q Consensus 651 ~~~~~~~~l~q~IQ--ASdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywRLLSpsYLtrILdl 723 (876)
.+||+...|...+. +|..++..+|.++. . +-+...-||..++++|.||+....=....+..
T Consensus 20 ~~pvs~~~La~~~~~~~~~~~v~~~l~~L~-----------~-~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~ 82 (162)
T 1t6s_A 20 EEPVNLQTLSQITAHKFTPSELQEAVDELN-----------R-DYEATGRTFRIHAIAGGYRFLTEPEFADLVRQ 82 (162)
T ss_dssp SSCBCHHHHHHHTTCCCCHHHHHHHHHHHH-----------H-HHHHHTCSEEEEEETTEEEEEECGGGHHHHHH
T ss_pred CCCCCHHHHHHHhCcCCCHHHHHHHHHHHH-----------H-HhhhCCCCEEEEEECCEEEEEEcHHHHHHHHH
Confidence 56777777777788 99999999999997 2 22223469999999998988765433444433
No 3
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=27.55 E-value=1.4e+02 Score=26.56 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=68.6
Q ss_pred ccCHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEcCEEEEeChHHHHHHHHHHHHHHhhCCCCCCCCCHHHH
Q psy7139 664 EISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTET 743 (876)
Q Consensus 664 QASdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywRLLSpsYLtrILdlILtlIdeESWsLdkVpldet 743 (876)
.+|..||..+|..+. . ..+..+..+........+..++..++.++= ..|+.++.
T Consensus 56 ~i~~~e~~~~l~~~~-----------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~D~d~~--g~i~~~ef 109 (191)
T 3khe_A 56 QLDRKELIEGYRKLM-----------Q-------------WKGDTVSDLDSSQIEAEVDHILQSVDFDRN--GYIEYSEF 109 (191)
T ss_dssp EECHHHHHHHHHHHH-----------C------------------CCHHHHHHHHHHHHHHHHHTCTTCS--SSEEHHHH
T ss_pred CCcHHHHHHHHHHHH-----------h-------------hcccccccccchhhHHHHHHHHHHhCCCCC--CcCCHHHH
Confidence 478899999998873 1 001112222334445566666666665441 25888888
Q ss_pred HHHhhc---CCCHHHHHHHHHHccCccccccCCCCCCeEEechhHHHHH--------------HHHHhcCCCCCCCHHHH
Q psy7139 744 KVTLEA---LVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRV--------------IGEALLRPTEKFILNDF 806 (876)
Q Consensus 744 vEALee---~yPreVIEhVLrkYGtpS~~k~~ddGd~~wkLDEdKICRw--------------fAiqLLraa~KfnLEEF 806 (876)
+..+.. ......+..+|+.|-. ++++ .|+.+.+.+. +...=....+.++++||
T Consensus 110 ~~~~~~~~~~~~~~~~~~~F~~~D~--------d~~G--~I~~~E~~~~l~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF 179 (191)
T 3khe_A 110 VTVCMDKQLLLSRERLLAAFQQFDS--------DGSG--KITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEF 179 (191)
T ss_dssp HHHHSCHHHHCCHHHHHHHHHHHCT--------TCSS--EECHHHHHHHTTSSCCCHHHHHHHHHHHCTTCSSSEEHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHCC--------CCcC--cCCHHHHHHHHccCCCCHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 887642 4667888889988843 1222 2333333333 32222233467999999
Q ss_pred HHHHHHhCCC
Q psy7139 807 LTVWQASVPE 816 (876)
Q Consensus 807 MEtWKsSVPE 816 (876)
+..|+..++.
T Consensus 180 ~~~~~~~~~~ 189 (191)
T 3khe_A 180 VEMMQKICDV 189 (191)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcc
Confidence 9999887653
No 4
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=26.88 E-value=2.8e+02 Score=23.22 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=11.5
Q ss_pred ccCHHHHHHHHHHhC
Q psy7139 664 EISDETLGTTEETVN 678 (876)
Q Consensus 664 QASdeEL~~~L~~l~ 678 (876)
.+|..||..+|..++
T Consensus 24 ~i~~~el~~~l~~~~ 38 (149)
T 2mys_C 24 KITASQVGDIARALG 38 (149)
T ss_pred cCcHHHHHHHHHHhC
Confidence 367888888888776
No 5
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=24.97 E-value=30 Score=35.41 Aligned_cols=64 Identities=8% Similarity=0.011 Sum_probs=46.4
Q ss_pred cccccCCCCCCcccccCHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEcCEEEEeChHHHHHHHHHHH
Q psy7139 650 TEETVNPPTDQQCIEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFPGYIRTLDHDYNFRMLSHIL 725 (876)
Q Consensus 650 ~~~~~~~~~l~q~IQASdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEIDGywRLLSpsYLtrILdlIL 725 (876)
..+||+...|...+..+..++..+|.++. . +-+...-||..++++|.||+....=...++..++
T Consensus 27 a~epvs~~~La~~l~~~~~~v~~~l~~L~-----------~-~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~ 90 (219)
T 2z99_A 27 IDTPVTADALAAATEQPVYRVAAKLQLMA-----------D-ELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLL 90 (219)
T ss_dssp CSSCBCHHHHHHHHTSCHHHHHHHHHHHH-----------H-HHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHH-----------H-HHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHh
Confidence 34567778888888999999999999997 2 1222346999999999998876544444444443
No 6
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=21.53 E-value=2e+02 Score=25.07 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHhC
Q psy7139 798 TEKFILNDFLTVWQASV 814 (876)
Q Consensus 798 a~KfnLEEFMEtWKsSV 814 (876)
.++++++||+..++..+
T Consensus 142 dg~i~~~ef~~~~~~~~ 158 (174)
T 1q80_A 142 DGLLSLEEFVIAGSDFF 158 (174)
T ss_dssp SSSBCHHHHHHHHHHHH
T ss_pred CceEeHHHHHHHHHHHh
Confidence 45799999999998876
No 7
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=20.66 E-value=2.7e+02 Score=28.08 Aligned_cols=82 Identities=10% Similarity=0.159 Sum_probs=61.7
Q ss_pred cccCHHHHHHHHHHhCCCCccchhhhhhccccccCCCeeeEEEc--CEEEEeChHHHHHHHHHHHHHHhh--CCCCCC-C
Q psy7139 663 IEISDETLGTTEETVNPPTDQQCIEIKRFDRANSSLGFRFLLFP--GYIRTLDHDYNFRMLSHILNLVDS--NSWSAD-Q 737 (876)
Q Consensus 663 IQASdeEL~~~L~~l~~~~~~~c~~~~A~~~~~~~~~~~~cEID--GywRLLSpsYLtrILdlILtlIde--ESWsLd-k 737 (876)
...|..++...|..+. + +-+++.++ +..++++.++..++..-|+..+.. ...++. .
T Consensus 27 ~~l~~~~l~~~l~~l~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~H~~~P~~~G 87 (258)
T 1lva_A 27 ASLSLEETRKLLQSMA-----------A--------AGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHSRYPLRPG 87 (258)
T ss_dssp HTCCHHHHHHHHHHHH-----------H--------TTSEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSSC
T ss_pred hCCCHHHHHHHHHHHH-----------h--------CCCEEEeccCCccEEEcHHHHHHHHHHHHHHHHHHHHhCCCccC
Confidence 6678889988888775 2 12347776 455579999999999999999886 223443 3
Q ss_pred CCHHHHHHHhhcCCCHHHHHHHHHHc
Q psy7139 738 IDRTETKVTLEALVPAEIVDFLFDHY 763 (876)
Q Consensus 738 VpldetvEALee~yPreVIEhVLrkY 763 (876)
++.+++...+...+|..++.++|+..
T Consensus 88 ~~~~~L~~~~~~~~~~~l~~~ll~~l 113 (258)
T 1lva_A 88 LAREELRSRYFSRLPARVYQALLEEW 113 (258)
T ss_dssp EEHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHhccccCCHHHHHHHHHHH
Confidence 88888888776667999999999875
No 8
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=14.77 E-value=1e+02 Score=27.99 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.2
Q ss_pred eeEEEeCCCCCcEEEEecCCCCcccHHHHHHHHHhcC
Q psy7139 827 GLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQ 863 (876)
Q Consensus 827 GlALVd~sSsp~tIrYFpesDLP~DPkERFkeLFkIR 863 (876)
|+.|. .+.+...+|...++||.-+++|+..|=++.
T Consensus 43 ~ItYt--~~~G~~t~y~~~d~LP~~vrekL~~lp~I~ 77 (88)
T 1mby_A 43 SISYT--SPDGQTTRYGENEKLPEYIKQKLQLLSSIL 77 (88)
T ss_dssp EEEEE--CTTSCEEEEETTSCCCHHHHHHHTTTCCEE
T ss_pred eeEEe--CCCCceEEcCcCCCccHHHHHHHhhhHHHH
Confidence 44444 456678999999999999999999875543
No 9
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=14.56 E-value=5.9e+02 Score=22.05 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=44.1
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHhhc------------CCCHHHHHHHHHHccCccccccCCCCCC----------eEE
Q psy7139 723 HILNLVDSNSWSADQIDRTETKVTLEA------------LVPAEIVDFLFDHYMVESTDKTNQNGEP----------YYC 780 (876)
Q Consensus 723 lILtlIdeESWsLdkVpldetvEALee------------~yPreVIEhVLrkYGtpS~~k~~ddGd~----------~wk 780 (876)
.++..++.++ =..|+.++.+..+.. ......+..+|+.|-. +.+|.. .+.
T Consensus 64 ~~f~~~D~d~--dG~I~~~Ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~------d~dG~Is~~E~~~~l~~~g 135 (185)
T 2sas_A 64 DLKGRADINK--DDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDV------SGDGIVDLEEFQNYCKNFQ 135 (185)
T ss_dssp HHHHHHCTTC--SSCEEHHHHHHHHHHHHHTCCSGGGSCTTHHHHHHHHHHHHCT------TSSSCCCHHHHHHHTTSSC
T ss_pred HHHHhcCCCC--CCeEcHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHcC------CCCCeEcHHHHHHHHHHhC
Confidence 4455554433 124666666655532 1234677778887754 111210 011
Q ss_pred echhHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC
Q psy7139 781 LIEDKICRVIGEALLRPTEKFILNDFLTVWQASV 814 (876)
Q Consensus 781 LDEdKICRwfAiqLLraa~KfnLEEFMEtWKsSV 814 (876)
+....+-..|...=....++++++||...++..+
T Consensus 136 ~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~~ 169 (185)
T 2sas_A 136 LQCADVPAVYNVITDGGKVTFDLNRYKELYYRLL 169 (185)
T ss_dssp CCCSSHHHHHHHHHTTTTSCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHh
Confidence 2333333334333333456799999999988875
No 10
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=14.52 E-value=5.5e+02 Score=21.68 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=12.2
Q ss_pred ccCHHHHHHHHHHhC
Q psy7139 664 EISDETLGTTEETVN 678 (876)
Q Consensus 664 QASdeEL~~~L~~l~ 678 (876)
.+|..||..+|..++
T Consensus 31 ~i~~~el~~~l~~~g 45 (146)
T 2qac_A 31 KISIDNASYNARKLG 45 (146)
T ss_dssp BEEHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHhC
Confidence 467889999998876
Done!