RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7139
(876 letters)
>gnl|CDD|220363 pfam09724, DUF2036, Uncharacterized conserved protein (DUF2036).
This family of proteins includes members ranging in size
from approximately 300 to 460 residues. There are a
number of well-conserved domains along the length.
Length = 325
Score = 127 bits (320), Expect = 5e-32
Identities = 56/177 (31%), Positives = 97/177 (54%), Gaps = 11/177 (6%)
Query: 705 FPGYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTET-KVTLEALVPAEIVDFLFDHY 763
G R L DY + L +L L+DSNSW D++ E + + P E+++ + + +
Sbjct: 155 IDGRARVLSPDYETKALDLLLVLLDSNSWDLDEVSLDEVVEALRPSEYPEEVIETVLNKF 214
Query: 764 MVESTDKTNQNGEPYYCLIEDKICRVIGEALLRPT--EKFILNDFLTVWQASVPE--GLK 819
+ +++ ++ + L EDK+CR E LL+ K L++F+ W+ S+PE G+
Sbjct: 215 GTKESEEGDR-----FALDEDKVCRWFAEQLLQKGLAGKMNLDEFMETWKESLPEFFGMD 269
Query: 820 TNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRIDQLFQVQDKWTLEDIRPYIE 876
+L QL G A + + ++ + QY E +L D K R +LF+++ +W LE+I PYIE
Sbjct: 270 LDLDQLRGYALLDRPAEETI-QYLSEEDLPTDPKERFKELFELRKRWELEEIEPYIE 325
Score = 59.6 bits (145), Expect = 2e-09
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 391 SLKLMEIPQSLISEIQQGN-RVLFRGDIGDPPVLCTQRQTFQVKEAETSNSLTLIRGLYF 449
KL+E+ + L+ I++G + F+G D VLCT +T+ +K+AETSN+L L+
Sbjct: 1 DYKLLELDEDLLDAIKEGQGSLTFKGLKDDKAVLCTDDKTYDLKQAETSNTLLLLPECKP 60
Query: 450 PD 451
PD
Sbjct: 61 PD 62
>gnl|CDD|217064 pfam02487, CLN3, CLN3 protein. This is a family of proteins from
the CLN3 gene. A missense mutation of glutamic acid (E)
to lysine (K) at position 295 in the human protein has
been implicated in Juvenile neuronal ceroid
lipofuscinosis (Batten disease).
Length = 409
Score = 32.5 bits (74), Expect = 1.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 523 LSTTEEILSPQSNKQSIEMTKETLDLTSNRQCNQMSEETVCLPSN 567
LS E+ILS Q + L ++ R+C +S V L
Sbjct: 20 LSAAEDILSHQRGHVDSDPPPTCLPHSTRRECKSLSTAAVLLADI 64
>gnl|CDD|114726 pfam06020, Roughex, Drosophila roughex protein. This family
consists of several roughex (RUX) proteins specific to
Drosophila species. Roughex can influence the
intracellular distribution of cyclin A and is therefore
defined as a distinct and specialised cell cycle
inhibitor for cyclin A-dependent kinase activity. Rux is
though to regulate the metaphase to anaphase transition
during development.
Length = 334
Score = 31.9 bits (72), Expect = 1.5
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 14/110 (12%)
Query: 129 SQMSEETLSQPP---------NQQCIEMTEETLGRTEESLCPPSNQQCIEMSVETLGTTE 179
+ ++ TL PP N +C T++ TEE PP+ ++ + ++ TE
Sbjct: 200 TSLNRSTLIPPPCSISFARRANARCNPTTDDE-EDTEEDSPPPTARRGVRRTL----FTE 254
Query: 180 ETVNPPSDQQCIEMSEETLSQPSNQQCIEMTEETLGRMEESPCPPSNQQC 229
E D + E QP+ QQ E E + + P P
Sbjct: 255 ENTQEEEDADPDPIPEVEQEQPAPQQAEETAREAVNIPVDLPTPLETTNF 304
>gnl|CDD|220787 pfam10505, NARG2_C, NMDA receptor-regulated gene protein 2. The
transition of neuronal cells from pre-cursor to mature
state is regulated by the N-methyl-d-aspartate (NMDA)
receptor, a glutamate-gated ion channel that is
permeable to Ca2+. NMDA receptors probably mediate this
activity by permitting expression of NARG2. NARG2 is
transiently expressed, being a regulatory protein that
is present in the nucleus of dividing cells and then
down-regulated as progenitors exit the cell cycle and
begin to differentiate. NARG2 contains repeats of
(S/T)PXX, (11 in mouse, six in human), a putative
DNA-binding motif that is found in many gene-regulatory
proteins including Kruppel, Hunchback and Antennapedi.
Length = 220
Score = 29.8 bits (67), Expect = 4.7
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 8/117 (6%)
Query: 332 QMSEETLSQPSNQQFIKMTEDTLYERTVQDSKVVIAHAKLTEDELCPITQAIYMGSSMQS 391
MS+ L + + R + I KLT L Y S
Sbjct: 70 IMSKSELCHLWTELLLHSNSKGYCLRISARTSKPILLEKLTLKSLEEELHDYYNSSMPNL 129
Query: 392 LKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQ-------RQTFQVKEAETSNSL 441
L + + + +G L R D +LC + ++ + +T +
Sbjct: 130 LSHLCEFLKKLLNLPEG-DYLLRHSAKDKFLLCVKTKDGKVTPTSYNLHLLQTHSVP 185
>gnl|CDD|185046 PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR;
Provisional.
Length = 257
Score = 29.6 bits (67), Expect = 6.3
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 708 YIRTLDHDYNFRMLSHI--LNLVDSNSWSADQIDRTETKVTLEALVPAEIVDFLFDHYMV 765
YI +D YN RM S I N + S + KV L E+ + L
Sbjct: 117 YIHKIDSMYNLRMYSRIGRRNPLYSTAIG---------KVLLAWRDRDEVREILSGVEFK 167
Query: 766 ESTDKTNQNGEPY 778
ST+KT + E
Sbjct: 168 RSTEKTITSTEAL 180
>gnl|CDD|224386 COG1469, COG1469, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 29.6 bits (67), Expect = 6.4
Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 42/191 (21%)
Query: 169 EMSVETLGTTEETVNPPSDQQCIEMS---------EETLSQPSNQQCIEMTEETLGRMEE 219
T+ T + V+ P++Q+ I MS E C+E+ + L R
Sbjct: 37 GGPQTTIATFDVFVDLPAEQKGIHMSRLVELLEEVLEEGPTELEFLCLEIAKRLLSRHMY 96
Query: 220 S---------------PCPPSNQQCIEMSDETLGTTEETVNPPSDQQCIEMSEETL---S 261
+ P S ++ +E D L E + + +E+ T S
Sbjct: 97 ASRAEVEVRFPYFLRKTSPVSGKKSLEPYDVFLTAELERDDGEKKEVGVEVVGTTACPCS 156
Query: 262 QPSNQQCNQMAEETL-GRMEESLCPPSNQQCIEMTEETLGRTEETVNPPTDQ-----QCI 315
+ ++ E ++ NQ+ G V I
Sbjct: 157 KEISRARLAEDEPYGEEILDGIPAATHNQR---------GVVTLIVETEDGVDVSLEDLI 207
Query: 316 EMAEEILTPPI 326
++AE + P+
Sbjct: 208 DVAESSASSPL 218
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.127 0.362
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,654,972
Number of extensions: 3877262
Number of successful extensions: 2325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2302
Number of HSP's successfully gapped: 34
Length of query: 876
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 771
Effective length of database: 6,280,432
Effective search space: 4842213072
Effective search space used: 4842213072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.3 bits)