RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7139
(876 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.3 bits (179), Expect = 2e-13
Identities = 99/670 (14%), Positives = 190/670 (28%), Gaps = 232/670 (34%)
Query: 249 DQQCIEMSEETLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEETLGRTEETVNP 308
+ C ++ + S S ++ + + + + + L + EE V
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMS----------KDAVSGTLRLFWTLLSKQEEMVQ- 80
Query: 309 PTDQQCIEMAEEILTPPINQQW--SQMSEETLSQPS----------------NQQFIKMT 350
+ EE+L N ++ S + E QPS NQ F K
Sbjct: 81 -------KFVEEVLRI--NYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 351 ----------EDTLYERTVQDSKVVIAH-------------AKLTEDELCPITQAIY--- 384
L E ++ +K V+ L+ C + I+
Sbjct: 131 VSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 385 MGSSMQSLKLMEIPQSL---------------------ISEIQQGNRVLFRG-------- 415
+ + ++E+ Q L I IQ R L +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 416 ---DIGDPPVL------C----TQRQTFQVKEAETSNSLTLIRGLYFPDHPRIKENN-TE 461
++ + C T R +T H + ++ T
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFK----------QVTDFLSAATTTHISLDHHSMTL 298
Query: 462 TERELVRQNKKKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQRIKM--- 518
T E+ ++L + ++ + L P +E+L+ P +R+ +
Sbjct: 299 TPDEV-------KSLL--LKYLDCRPQDL--P---------REVLTTNP---RRLSIIAE 335
Query: 519 -TEETLSTTEEILSPQSNKQS--IEMTKETLDLTSNRQC-NQMS--EETVCLPSNQQCI- 571
+ L+T + +K + IE + L+ R+ +++S + +P+ +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 572 --EMTEETLGRMEESLCPPSNQQCIEISDETLGTTEETVNPPTDQQCNQMTEETLGRTEE 629
++ + + + L +E +Q + T E
Sbjct: 396 WFDVIKSDVMVVVNKLH---KYSLVE------------------KQPKESTISIPSIYLE 434
Query: 630 SLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEISDETLGTTEETVNPPTDQ------ 683
N+ + + + N P + + D P DQ
Sbjct: 435 LKVKLENEY--ALHRSIV----DHYNIP---KTFDSDDLIP--------PYLDQYFYSHI 477
Query: 684 -----QCIEIKRFDRANSS-LGFRFLLFPGYIRTLDHD-YNFRMLSHILN-LVDSNSWSA 735
+R L FRFL + + HD + ILN L +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLE-----QKIRHDSTAWNASGSILNTLQQLKFYK- 531
Query: 736 DQIDRTETKVTLEALVPAEIVDFLFDHYMVESTDKTNQNGEPYYCLIEDKICRVIGEALL 795
I + E LV I+DFL +N LI K ++ AL+
Sbjct: 532 PYI--CDNDPKYERLV-NAILDFLPKI---------EEN------LICSKYTDLLRIALM 573
Query: 796 RPTEKFILND 805
E I +
Sbjct: 574 AEDE-AIFEE 582
Score = 58.7 bits (141), Expect = 7e-09
Identities = 71/550 (12%), Positives = 150/550 (27%), Gaps = 163/550 (29%)
Query: 402 ISEIQQGNRVL-------FRGDIGDPPVLCTQRQTFQVKEAE----TSNSLTLIRGLYFP 450
E Q + + F + V + +E + + ++++ L++
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW- 69
Query: 451 DHPRIKENNTETERELVRQNKKKETLCPNQQCI--EMAEETLSQPS------IQQDNQMD 502
+ E ++ V +E L N + + + E QPS I+Q +++
Sbjct: 70 ---TLLSKQEEMVQKFV-----EEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLY 120
Query: 503 KEILSPPPSNQQRIKMTEETLSTTEEILSPQSN----------KQSIEMTKETLDLTSNR 552
+ N R++ + L L P N K + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLK-LRQALLELRPAKNVLIDGVLGSGKTW--VALDVCL----- 172
Query: 553 QCNQMSEETVCLPSNQ-------QCIEMTEETLGRMEESLC----PPSNQQCIEISDETL 601
S + C + C + ET+ M + L P + + S
Sbjct: 173 -----SYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRS-DHSSNIK 224
Query: 602 GTTEETVNPPTDQQCNQMTEETL--------GRTEESLCPPSNQQCIEMSDETLGTTE-- 651
++ E L + + N C + L TT
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSC-----KILLTTRFK 275
Query: 652 ---ETVNPPTDQQCIEISDETLG-TTEETVNPPTDQQCIEIKRFD-RANSSLGFRFLLFP 706
+ ++ T I + ++ T +E + + ++ + D L
Sbjct: 276 QVTDFLSAATTTH-ISLDHHSMTLTPDEVKS--LLLKYLDCRPQDLPREVLTTNPRRL-- 330
Query: 707 GYIRTLDHDYNFRMLSHILNLVDSNSWSADQIDRTET--KVTLEALVPAEIVDFLFDHYM 764
I D ++W D+ T + +L L PAE
Sbjct: 331 SIIAESIRDGLAT----------WDNWKHVNCDKLTTIIESSLNVLEPAEY--------- 371
Query: 765 VESTDKTNQNGEPYY--CLI--ED-KICRVIGEALLRPTEKFILNDFLTVWQASVPEGLK 819
+ + I PT +L+ +W + +
Sbjct: 372 -----------RKMFDRLSVFPPSAHI----------PTI--LLS---LIWFDVIKSDVM 405
Query: 820 TNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTR---------IDQLFQVQDKWTLED 870
+ +L + V + K + P + L +K +D + + + +D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDD 463
Query: 871 IRP-----YI 875
+ P Y
Sbjct: 464 LIPPYLDQYF 473
Score = 49.1 bits (116), Expect = 7e-06
Identities = 78/594 (13%), Positives = 154/594 (25%), Gaps = 171/594 (28%)
Query: 89 CIEMSDETLG--TTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIE 146
C ++ D + EE + I+ + TL + +
Sbjct: 35 CKDVQDMPKSILSKEEI-------------DHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 147 MTEETLGRTEESLCPPSNQQCIEMSVETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQC 206
EE L + L P + + S+ T E+ +D Q ++ +S+ Q
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--VFAKYNVSRL---QP 136
Query: 207 IEMTEETLGRMEESP-------------------CPPSNQQCIEMSDE----TLGTTEET 243
+ L + + C QC +M + L
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDFKIFWLNLKNCN-- 193
Query: 244 VNPPSDQQCIEMSEE---TLSQPSNQQCNQM---------AEETLGRM------EESL-- 283
S + +EM ++ + + + + L R+ E L
Sbjct: 194 ----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 284 ----CPPS-----NQQC-IEMTEETLGRTEETVNPPTDQQCIEMAEEILTPPINQQWSQM 333
N C I +T T+ T ++ LTP
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--------- 300
Query: 334 SEETLSQPSNQQFIKMTEDTLYERTVQDSKVVIAH-AKLTEDELCPITQAIYMGSSMQSL 392
+E S ++ L + + ++ A+ D L ++
Sbjct: 301 -DEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD---- 353
Query: 393 KLMEIPQSLI-----SEIQQ--GNRVLFRGDIGDPP-VLCT--QRQTFQVKE-------- 434
KL I +S + +E ++ +F P +L
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 435 ----AETSNSLTL-IRGLYFPDHPRIKENNTETERELVRQNKKKETLCPNQ--------- 480
+ T+ I +Y ++ EN R +V +T +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKL-ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 481 ---------QCIEMAEETLSQPSIQQD-------------------------NQMD---K 503
+ IE E + D Q+
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 504 EILSPPPSNQQRIKMTEETLSTTEEIL--SPQSN-KQSIEMTK-ETLDLTSNRQ 553
I P ++ + + L EE L S ++ + M + E + +++Q
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 39.8 bits (92), Expect = 0.005
Identities = 27/217 (12%), Positives = 58/217 (26%), Gaps = 83/217 (38%)
Query: 13 MSDKTFSRA-IVLGR--KDGRMEESLCPPSNQQCIEMSDETLGTT-----------EETV 58
+ K + +VL ++ + + N C + L TT T
Sbjct: 238 LKSKPYENCLLVL-LNVQNAKAWNAF----NLSC-----KILLTTRFKQVTDFLSAATTT 287
Query: 59 NPPIDQQCNPMAE-ETLGRMEESLCPPSNQQCIEMSDETLGTTEETVNPPTDQQCIEMAE 117
+ +D + E SL + ++ + L T NP + + +
Sbjct: 288 HISLDHHSMTLTPDEVK-----SLL----LKYLDCRPQDLPREVLTTNP----RRLSIIA 334
Query: 118 EILSQPLN--QQWSQMSEETLSQPPNQQCIEMTEETLGRTEESLCPPSNQQCIEMSVETL 175
E + L W ++ + L+ IE S+ L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTT----------------------------IIESSLNVL 366
Query: 176 GTTE------------ETVNPPSDQQCI---EMSEET 197
E + + P+ + ++ +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 5e-04
Identities = 52/281 (18%), Positives = 85/281 (30%), Gaps = 94/281 (33%)
Query: 480 Q--QCIEMAEETLSQPSIQQD--NQMDK-----------EILSPPPSNQ---------QR 515
Q Q M + QD N+ D +I+ P N +R
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 516 I-----KMTEETLS----TTEEI---LSPQSNKQSIEMTKETLDLTSNRQ---------- 553
I M ET+ TE+I ++ S + K L T Q
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 554 CNQMSEETVCLP--------SNQQCIEMTEETLGRMEES-LCPPSNQQCIEISD--ETL- 601
+ + + +P S LG E + L ++ + I E +
Sbjct: 1744 FEDLKSKGL-IPADATFAGHS-----------LG--EYAALASLAD--VMSIESLVEVVF 1787
Query: 602 --GTTEETVNPPTDQQCNQ---MTEETLGRTEESLCPPSNQQCIEMSDETLGTTEETVN- 655
G T + P D+ M GR S + Q +E + G E VN
Sbjct: 1788 YRGMTMQVA-VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 656 --PPTDQQCIEISDETLGTTE--ETVNPPTDQQCIEIKRFD 692
+QQ + + G +TV + I++++ D
Sbjct: 1847 NVE--NQQYV-AA----GDLRALDTVTNVLNF--IKLQKID 1878
Score = 42.7 bits (100), Expect = 6e-04
Identities = 42/244 (17%), Positives = 83/244 (34%), Gaps = 86/244 (35%)
Query: 339 SQPSNQQFIKMTEDTLYERTVQDSKVV-IAHAKLT------EDELCPITQ----AIYMGS 387
+ + + M +T+ + ++ K+ + T E L TQ A+
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL-TLM 1739
Query: 388 SMQSLKLME----IPQ-------SL------------ISEIQQGNRVLF-RGDIGDPPVL 423
+ + ++ IP SL +S I+ V+F RG
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS-IESLVEVVFYRG-------- 1790
Query: 424 CTQRQTFQ--VKEAETSNSLTLIRGLYFPDHP-RIKEN-NTETERELVRQNKKKETL--- 476
T Q V E S + + +P R+ + + E + +V + K+
Sbjct: 1791 ----MTMQVAVPRDELGRSNYGMIAI----NPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 477 -----CPNQQCI---EM-AEETLSQPSIQQDNQMDKEILSPPPSNQQRIKMTE--ETLST 525
NQQ + ++ A +T++ +L+ Q+I + E ++LS
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDTVT------------NVLN--FIKLQKIDIIELQKSLS- 1887
Query: 526 TEEI 529
EE+
Sbjct: 1888 LEEV 1891
Score = 41.6 bits (97), Expect = 0.001
Identities = 54/345 (15%), Positives = 83/345 (24%), Gaps = 146/345 (42%)
Query: 127 QWSQ---MSEETLSQPPNQQCI-----EMTEETLGRTEESLC------PPS--------- 163
Q SQ M + Q + ++T G S+ P +
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYG---FSILDIVINNPVNLTIHFGGEK 1680
Query: 164 ----NQQCIEMSVETL--GTTE-----ETVNPPSDQQCIEMSEETLSQPSNQQ-CIEMTE 211
+ M ET+ G + + +N S + LS Q + + E
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 212 ----ETLGRMEESPCPP-------SNQQCIEMSDETLGTTEET-------VNPPSD---- 249
E L + P S LG E V
Sbjct: 1741 KAAFEDL--KSKGLIPADATFAGHS-----------LG--EYAALASLADVMSIESLVEV 1785
Query: 250 --------QQCIEMSEETLSQPSNQQCNQMAEETLGRMEESLCPPSNQQCIEMTEETLGR 301
Q + E S M GR+ S + Q +E + G
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYG------MIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 302 TEETVNPPTDQQCIEMAEEILTPPINQQWSQMSEETLSQPSNQQFIKMTEDTLYERTVQD 361
E VN N NQQ
Sbjct: 1840 LVEIVN------------------YNV-------------ENQQ---------------- 1852
Query: 362 SKVVIA-HAK-LTEDELCPITQAIYMGSSMQSLKLMEIPQSLISE 404
V A + L D + + I +Q + ++E+ +SL E
Sbjct: 1853 --YVAAGDLRAL--DTVTNVLNFI----KLQKIDIIELQKSLSLE 1889
Score = 37.7 bits (87), Expect = 0.020
Identities = 57/308 (18%), Positives = 94/308 (30%), Gaps = 122/308 (39%)
Query: 285 PPSNQQCIEMTEETLGRTEETVNPPTDQQCIEMAEEILTPPIN-QQWSQMSEETLSQPSN 343
I+ + ETL E + D AE++ T +N +W L PSN
Sbjct: 181 HVLVGDLIKFSAETL---SELIRTTLD------AEKVFTQGLNILEW-------LENPSN 224
Query: 344 QQFIKMTEDTLYERTVQDSKVVI-----AH----AK---LTEDELCPITQ---------- 381
T D Y ++ S +I AH AK T EL +
Sbjct: 225 ------TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 382 ---AIYMGSSMQSLKLMEIPQSLISEIQQGNRVLFRGDIGDPPVLCTQRQTF-------- 430
AI S +S +++ VLF IG + + +
Sbjct: 279 TAVAIAETDSWESF---------FVSVRKAITVLFF--IG----VRCY-EAYPNTSLPPS 322
Query: 431 QVKEAETSN----SLTL-IRGLYFPDHPRIKENNTETERELVRQNKKKETLCPNQQCIEM 485
++++ +N S L I L + + + + N P + +E+
Sbjct: 323 ILEDSLENNEGVPSPMLSISNL----------TQEQVQDYVNKTNSHL----PAGKQVEI 368
Query: 486 AEETLSQPSIQQDNQMDKEILS-PPPS-----------------NQQRIKMTEETLSTTE 527
+ L N ++S PP S +Q RI +E L +
Sbjct: 369 S---LV-------NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 528 E---ILSP 532
+ SP
Sbjct: 419 RFLPVASP 426
Score = 33.9 bits (77), Expect = 0.29
Identities = 28/158 (17%), Positives = 45/158 (28%), Gaps = 56/158 (35%)
Query: 3 LHCELFASITMSDKTFSRAIVLGRKDGRMEESLCPPSNQQCIEMSDETLGTTEET---VN 59
L A + MS + + G + P DE LG + +N
Sbjct: 1770 LAS--LADV-MS---IESLVEVVFYRGMTMQVAVP---------RDE-LGRSNYGMIAIN 1813
Query: 60 PPIDQQCNPMAEETLGRMEESLCPPSNQQCIEMSDETLGTTEETVN---PPTDQQ--C-- 112
P GR+ S + Q +E + G E VN +QQ
Sbjct: 1814 P--------------GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE--NQQYVAAG 1857
Query: 113 ----IEMAEEILS---------QPLNQQWS-QMSEETL 136
++ +L+ L + S + E L
Sbjct: 1858 DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.072
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 426 QRQTFQVKEAETSNSLTLIRGLYFPDH-PRIKENNT 460
++Q +K+ + SL L Y D P + T
Sbjct: 18 EKQ--ALKKLQ--ASLKL----YADDSAPALAIKAT 45
Score = 29.5 bits (65), Expect = 2.8
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 9/33 (27%)
Query: 513 QQRIKMTEETLSTTEEILSPQSN-----KQSIE 540
+Q +K + +L ++ + S K ++E
Sbjct: 19 KQALKKLQASL----KLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 4.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 10/39 (25%)
Query: 819 KTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDIKTRID 857
K LK+L+ S K Y + + IK ++
Sbjct: 19 KQALKKLQA------SLKL----YADDSAPALAIKATME 47
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 30.4 bits (67), Expect = 2.8
Identities = 34/282 (12%), Positives = 65/282 (23%), Gaps = 20/282 (7%)
Query: 36 CPPSNQQCIEMSDETLGTTEETVNPPIDQQCNPMAEETLGRMEESLCPPSNQQCIEMSDE 95
+ + + + + + + + + N +
Sbjct: 291 VEENGIKMCKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIH 350
Query: 96 TLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLSQPPNQQCIEMTEETLGRT 155
P EI + LN Q + S N I G +
Sbjct: 351 GDPYNAIEAIDPEKLNVFRTVREI-TGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLS 409
Query: 156 EESLCPPSNQQCIEMSVETL--GTTEETVNPPSDQQCIEMSEETLSQPSNQQCIEMTEET 213
L S++ + G T N S + + I
Sbjct: 410 LLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVI------ 463
Query: 214 LGRMEESPCPPSNQQCIEMSDETLGTTEETVNPPSDQQCIEMSEETLSQPSNQQCNQMAE 273
+ E + + P QC+ + + + CN
Sbjct: 464 ------RDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDG 517
Query: 274 ETLGRMEESLCPPSNQQCIEMTEETLGRTEETVNPPTDQQCI 315
E +S+C + QC +M + L T + P C
Sbjct: 518 EFREFENDSICVECDPQCEKMEDGLL-----TCHGPGPDNCT 554
>4ae7_A Thioesterase superfamily member 5; hydrolase, hotdog-fold; 1.45A
{Homo sapiens}
Length = 220
Score = 29.3 bits (65), Expect = 4.5
Identities = 6/65 (9%), Positives = 20/65 (30%)
Query: 294 MTEETLGRTEETVNPPTDQQCIEMAEEILTPPINQQWSQMSEETLSQPSNQQFIKMTEDT 353
+ E+T + N + + +E L + W ++ ++ + +
Sbjct: 19 LPEKTDLKDYALPNASWCSDMLSLYQEFLEKTKSSGWIKLPSFKSNRDHIRGLKLPSGLA 78
Query: 354 LYERT 358
+
Sbjct: 79 VSSDK 83
>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction,
TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A
{Clostridium cochlearium} SCOP: c.1.19.2 PDB: 1cb7_B*
1i9c_B*
Length = 483
Score = 28.7 bits (64), Expect = 8.5
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 814 VPEGLKTNLKQLEGLAFVRQSSKPVVVQYFPEVNLSEDI 852
VP + + E L Q K + V Y N+ +DI
Sbjct: 224 VPPSMSNAVGITEALLAAEQGVKNITVGYGECGNMIQDI 262
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 9.0
Identities = 12/68 (17%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 456 KENNTETERELVRQNKKKETLCPNQQCIEMAEETLSQPSIQQDNQMDKEILSPPPSNQQR 515
+E + +EL +K E Q+ E A++ L + + +Q Q++K ++ +++
Sbjct: 91 REEQRKRLQELDAASKVME-----QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
Query: 516 IKMTEETL 523
+ + +
Sbjct: 146 YQQPDADI 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.362
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,223,302
Number of extensions: 694519
Number of successful extensions: 1031
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1012
Number of HSP's successfully gapped: 42
Length of query: 876
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 774
Effective length of database: 3,853,851
Effective search space: 2982880674
Effective search space used: 2982880674
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.2 bits)