RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7139
         (876 letters)



>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 29.1 bits (64), Expect = 3.2
 Identities = 9/108 (8%), Positives = 27/108 (25%)

Query: 30  RMEESLCPPSNQQCIEMSDETLGTTEETVNPPIDQQCNPMAEETLGRMEESLCPPSNQQC 89
            + +    P      E    ++    +T    I      +  + +  +      PSN + 
Sbjct: 556 LILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF 615

Query: 90  IEMSDETLGTTEETVNPPTDQQCIEMAEEILSQPLNQQWSQMSEETLS 137
              + E++G              ++          ++   +       
Sbjct: 616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQ 663


>d1nqla4 g.3.9.1 (A:481-614) EGF receptor Cys-rich domains {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 26.8 bits (58), Expect = 7.2
 Identities = 14/107 (13%), Positives = 30/107 (28%)

Query: 185 PSDQQCIEMSEETLSQPSNQQCIEMTEETLGRMEESPCPPSNQQCIEMSDETLGTTEETV 244
           P  + C+     +  +    +C  +  E    +E S C   + +C+  +     T     
Sbjct: 14  PEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPD 73

Query: 245 NPPSDQQCIEMSEETLSQPSNQQCNQMAEETLGRMEESLCPPSNQQC 291
           N       I+      + P+                  +C   +  C
Sbjct: 74  NCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYADAGHVCHLCHPNC 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,982,696
Number of extensions: 135265
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 14
Length of query: 876
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 783
Effective length of database: 1,130,706
Effective search space: 885342798
Effective search space used: 885342798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.4 bits)