Query psy7140
Match_columns 1304
No_of_seqs 691 out of 5477
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 19:12:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0103|consensus 100.0 1E-117 3E-122 1013.5 62.8 699 560-1276 1-727 (727)
2 KOG0100|consensus 100.0 3E-117 6E-122 939.4 58.0 602 559-1183 35-646 (663)
3 KOG0104|consensus 100.0 1E-102 2E-107 889.4 62.5 710 558-1277 20-837 (902)
4 KOG0100|consensus 100.0 5E-102 1E-106 823.0 44.2 490 2-572 37-528 (663)
5 PTZ00009 heat shock 70 kDa pro 100.0 2.5E-94 5.4E-99 897.5 72.3 605 557-1181 1-615 (653)
6 PRK13410 molecular chaperone D 100.0 3.2E-93 7E-98 881.7 71.6 606 561-1196 3-621 (668)
7 PTZ00400 DnaK-type molecular c 100.0 1.2E-91 2.7E-96 871.7 70.2 587 560-1179 41-637 (663)
8 PRK13411 molecular chaperone D 100.0 4.9E-91 1.1E-95 866.5 72.9 589 561-1181 3-602 (653)
9 PTZ00186 heat shock 70 kDa pre 100.0 7.2E-90 1.6E-94 847.0 72.0 588 560-1178 27-623 (657)
10 PRK00290 dnaK molecular chaper 100.0 1.5E-89 3.2E-94 856.4 73.3 585 561-1180 3-597 (627)
11 PLN03184 chloroplast Hsp70; Pr 100.0 1.7E-89 3.7E-94 852.4 71.7 591 560-1183 39-639 (673)
12 CHL00094 dnaK heat shock prote 100.0 1.9E-88 4.2E-93 842.8 72.0 588 560-1180 2-599 (621)
13 TIGR02350 prok_dnaK chaperone 100.0 3.4E-88 7.4E-93 842.7 71.7 582 562-1178 2-593 (595)
14 KOG0101|consensus 100.0 6.9E-90 1.5E-94 800.3 51.8 603 558-1181 5-615 (620)
15 TIGR01991 HscA Fe-S protein as 100.0 1.5E-85 3.2E-90 811.0 71.8 577 562-1178 1-583 (599)
16 PF00012 HSP70: Hsp70 protein; 100.0 7.5E-85 1.6E-89 824.5 66.9 595 562-1180 1-602 (602)
17 PRK05183 hscA chaperone protei 100.0 2E-84 4.4E-89 802.1 69.1 576 561-1179 20-600 (616)
18 KOG0102|consensus 100.0 2.3E-83 5.1E-88 709.4 44.4 591 559-1179 26-626 (640)
19 PRK01433 hscA chaperone protei 100.0 1.1E-79 2.3E-84 751.6 67.1 544 561-1173 20-572 (595)
20 COG0443 DnaK Molecular chapero 100.0 1.8E-78 4E-83 735.7 58.7 567 560-1180 5-578 (579)
21 PTZ00186 heat shock 70 kDa pre 100.0 3.9E-79 8.5E-84 751.9 51.3 458 2-515 28-489 (657)
22 KOG0102|consensus 100.0 1.8E-78 4E-83 670.5 32.3 483 2-571 28-515 (640)
23 PRK13410 molecular chaperone D 100.0 7.3E-76 1.6E-80 727.1 55.1 458 1-515 1-464 (668)
24 PTZ00009 heat shock 70 kDa pro 100.0 1.5E-75 3.3E-80 728.9 56.5 470 1-519 4-477 (653)
25 KOG0103|consensus 100.0 1.5E-76 3.2E-81 676.7 39.8 471 1-514 1-472 (727)
26 KOG0101|consensus 100.0 2.2E-76 4.8E-81 687.5 41.1 491 1-570 7-500 (620)
27 PTZ00400 DnaK-type molecular c 100.0 7.6E-75 1.6E-79 721.4 54.3 468 2-526 42-518 (663)
28 PRK13411 molecular chaperone D 100.0 3.1E-74 6.7E-79 716.1 56.5 457 1-515 1-464 (653)
29 PLN03184 chloroplast Hsp70; Pr 100.0 6.7E-74 1.5E-78 712.8 55.4 457 2-515 40-501 (673)
30 TIGR01991 HscA Fe-S protein as 100.0 7E-74 1.5E-78 707.2 53.4 460 3-526 1-465 (599)
31 PRK00290 dnaK molecular chaper 100.0 8.1E-73 1.7E-77 705.9 56.8 457 1-516 1-463 (627)
32 PRK05183 hscA chaperone protei 100.0 2.8E-72 6.1E-77 694.0 53.0 449 2-517 20-468 (616)
33 CHL00094 dnaK heat shock prote 100.0 7E-72 1.5E-76 694.5 55.9 457 2-515 3-464 (621)
34 TIGR02350 prok_dnaK chaperone 100.0 6.1E-72 1.3E-76 696.8 55.5 456 2-516 1-461 (595)
35 COG0443 DnaK Molecular chapero 100.0 1.2E-70 2.7E-75 667.2 46.2 437 2-514 6-444 (579)
36 PRK01433 hscA chaperone protei 100.0 3.1E-69 6.6E-74 659.6 49.8 424 3-515 21-444 (595)
37 PF00012 HSP70: Hsp70 protein; 100.0 8.8E-69 1.9E-73 678.0 49.9 469 3-522 1-473 (602)
38 KOG0104|consensus 100.0 6.7E-62 1.5E-66 555.5 37.2 429 2-465 23-470 (902)
39 PRK11678 putative chaperone; P 100.0 6.2E-53 1.4E-57 498.3 39.2 336 3-412 2-447 (450)
40 PRK11678 putative chaperone; P 100.0 1.5E-50 3.3E-55 478.0 39.0 336 562-941 2-447 (450)
41 PRK13928 rod shape-determining 100.0 7.1E-36 1.5E-40 347.2 35.3 309 4-414 6-325 (336)
42 PRK13929 rod-share determining 100.0 2.2E-35 4.7E-40 341.5 33.8 306 3-410 6-324 (335)
43 PRK13928 rod shape-determining 100.0 4.2E-35 9E-40 340.8 35.2 308 563-942 6-324 (336)
44 PRK13929 rod-share determining 100.0 2.5E-34 5.4E-39 332.6 34.9 306 562-939 6-324 (335)
45 PRK13927 rod shape-determining 100.0 4.9E-33 1.1E-37 324.3 33.0 307 3-412 7-324 (334)
46 TIGR00904 mreB cell shape dete 100.0 9.4E-33 2E-37 320.9 34.3 307 4-412 5-327 (333)
47 PRK13927 rod shape-determining 100.0 3.1E-32 6.8E-37 317.5 33.3 308 561-941 6-324 (334)
48 TIGR00904 mreB cell shape dete 100.0 9.1E-32 2E-36 312.7 33.5 307 563-941 5-327 (333)
49 PRK13930 rod shape-determining 100.0 8.5E-32 1.8E-36 314.5 32.8 309 4-414 11-330 (335)
50 PRK13930 rod shape-determining 100.0 1.2E-30 2.7E-35 304.7 35.0 309 562-942 10-329 (335)
51 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 2.7E-28 5.9E-33 273.8 29.1 305 3-411 3-320 (326)
52 TIGR02529 EutJ ethanolamine ut 100.0 8.5E-28 1.9E-32 262.8 22.3 202 143-408 37-238 (239)
53 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 9.8E-28 2.1E-32 269.3 22.5 307 562-940 3-320 (326)
54 COG1077 MreB Actin-like ATPase 99.9 2.1E-25 4.5E-30 237.9 29.8 310 3-414 8-333 (342)
55 TIGR02529 EutJ ethanolamine ut 99.9 2.1E-26 4.4E-31 252.0 20.4 200 674-937 39-238 (239)
56 COG1077 MreB Actin-like ATPase 99.9 3.5E-25 7.6E-30 236.2 25.5 311 561-943 7-333 (342)
57 PRK15080 ethanolamine utilizat 99.9 2E-24 4.4E-29 240.6 29.1 202 145-410 66-267 (267)
58 PRK15080 ethanolamine utilizat 99.9 1.9E-24 4.1E-29 240.9 27.8 202 674-939 66-267 (267)
59 TIGR01174 ftsA cell division p 99.9 3.3E-20 7.1E-25 219.1 25.4 195 710-938 158-371 (371)
60 TIGR01174 ftsA cell division p 99.9 5.4E-20 1.2E-24 217.2 26.4 195 181-409 158-371 (371)
61 PRK09472 ftsA cell division pr 99.8 5.4E-19 1.2E-23 210.7 28.4 197 712-941 168-388 (420)
62 PRK09472 ftsA cell division pr 99.8 3.9E-19 8.5E-24 211.9 26.1 196 183-411 168-387 (420)
63 COG0849 ftsA Cell division ATP 99.7 6.3E-16 1.4E-20 178.1 21.7 206 171-413 159-381 (418)
64 COG0849 ftsA Cell division ATP 99.7 2.7E-15 5.9E-20 172.9 25.2 327 561-942 7-381 (418)
65 cd00012 ACTIN Actin; An ubiqui 99.5 1.3E-13 2.8E-18 163.5 18.2 239 146-412 75-347 (371)
66 cd00012 ACTIN Actin; An ubiqui 99.5 4.5E-13 9.7E-18 159.0 17.2 237 676-941 76-347 (371)
67 COG4820 EutJ Ethanolamine util 99.5 6.9E-14 1.5E-18 138.0 8.3 196 679-938 76-271 (277)
68 PRK13917 plasmid segregation p 99.5 1.2E-11 2.5E-16 143.5 25.9 211 170-415 115-339 (344)
69 smart00268 ACTIN Actin. ACTIN 99.5 1.3E-12 2.7E-17 155.4 18.1 237 145-412 74-347 (373)
70 PRK13917 plasmid segregation p 99.4 6E-11 1.3E-15 137.5 26.2 211 699-944 115-339 (344)
71 COG4820 EutJ Ethanolamine util 99.4 2.5E-13 5.4E-18 134.1 5.4 196 150-409 76-271 (277)
72 smart00268 ACTIN Actin. ACTIN 99.4 5.7E-12 1.2E-16 149.7 17.5 238 674-940 74-346 (373)
73 PTZ00280 Actin-related protein 99.2 2E-09 4.3E-14 129.1 25.7 208 697-919 103-338 (414)
74 PTZ00280 Actin-related protein 99.2 3E-09 6.4E-14 127.7 26.2 229 146-390 82-338 (414)
75 PF00022 Actin: Actin; InterP 99.2 9.2E-10 2E-14 132.1 20.2 246 146-413 74-368 (393)
76 TIGR01175 pilM type IV pilus a 99.2 3.3E-09 7.1E-14 124.9 24.5 185 709-939 142-347 (348)
77 TIGR03739 PRTRC_D PRTRC system 99.1 4.7E-09 1E-13 121.2 22.2 208 166-410 101-318 (320)
78 PF00022 Actin: Actin; InterP 99.1 1.4E-09 3.1E-14 130.5 18.1 247 675-941 74-367 (393)
79 PF11104 PilM_2: Type IV pilus 99.1 4.1E-09 9E-14 123.0 19.9 183 710-939 136-339 (340)
80 PTZ00281 actin; Provisional 99.0 4.8E-09 1E-13 123.9 18.7 218 167-411 101-349 (376)
81 PTZ00452 actin; Provisional 99.0 1.3E-08 2.9E-13 119.8 21.5 217 696-940 100-348 (375)
82 TIGR03739 PRTRC_D PRTRC system 99.0 2E-08 4.2E-13 116.1 21.3 224 675-939 85-318 (320)
83 PTZ00281 actin; Provisional 99.0 6.1E-09 1.3E-13 123.1 16.1 218 696-940 101-349 (376)
84 PTZ00452 actin; Provisional 99.0 9.1E-08 2E-12 112.8 24.5 215 146-389 80-318 (375)
85 PTZ00004 actin-2; Provisional 99.0 1.7E-08 3.6E-13 119.6 18.3 218 696-940 101-351 (378)
86 PTZ00004 actin-2; Provisional 98.9 2.3E-08 4.9E-13 118.5 19.2 218 167-411 101-351 (378)
87 PTZ00466 actin-like protein; P 98.9 4.3E-08 9.4E-13 115.6 21.2 217 167-411 106-353 (380)
88 TIGR01175 pilM type IV pilus a 98.9 5.4E-08 1.2E-12 114.6 19.0 185 180-410 142-347 (348)
89 PTZ00466 actin-like protein; P 98.9 9.8E-08 2.1E-12 112.6 20.2 218 696-940 106-353 (380)
90 PF11104 PilM_2: Type IV pilus 98.8 1.1E-07 2.4E-12 111.1 16.3 183 181-410 136-339 (340)
91 COG4972 PilM Tfp pilus assembl 98.7 2.4E-06 5.1E-11 93.0 22.5 162 712-920 151-314 (354)
92 PF06406 StbA: StbA protein; 98.6 1E-06 2.2E-11 101.6 18.6 170 196-407 141-316 (318)
93 PF06406 StbA: StbA protein; 98.6 8.9E-07 1.9E-11 102.0 17.2 173 725-936 141-316 (318)
94 COG4972 PilM Tfp pilus assembl 98.6 4.2E-06 9.2E-11 91.1 20.7 163 183-390 151-313 (354)
95 TIGR00241 CoA_E_activ CoA-subs 98.6 1.1E-06 2.5E-11 97.6 17.3 170 728-937 73-247 (248)
96 KOG0679|consensus 98.6 3.5E-06 7.5E-11 92.9 20.1 116 146-277 86-202 (426)
97 PRK10719 eutA reactivating fac 98.5 8.3E-07 1.8E-11 102.6 12.1 194 167-415 88-298 (475)
98 KOG0679|consensus 98.4 1.4E-05 3.1E-10 88.2 19.3 116 675-806 86-202 (426)
99 PF07520 SrfB: Virulence facto 98.2 0.00015 3.1E-09 91.1 24.7 342 48-414 332-836 (1002)
100 TIGR03192 benz_CoA_bzdQ benzoy 98.2 9.3E-05 2E-09 81.9 20.2 47 366-412 241-288 (293)
101 COG5277 Actin and related prot 98.2 6.1E-05 1.3E-09 89.4 19.8 98 696-806 106-204 (444)
102 COG5277 Actin and related prot 98.2 4.5E-05 9.8E-10 90.5 18.3 97 168-277 107-204 (444)
103 PRK10719 eutA reactivating fac 98.1 3.5E-06 7.5E-11 97.6 7.1 194 697-945 89-299 (475)
104 PF07520 SrfB: Virulence facto 98.1 0.00021 4.5E-09 89.7 22.3 266 670-942 416-835 (1002)
105 TIGR03192 benz_CoA_bzdQ benzoy 98.1 0.00016 3.5E-09 80.0 18.8 47 895-941 241-288 (293)
106 TIGR00241 CoA_E_activ CoA-subs 98.1 4E-05 8.7E-10 85.3 13.8 171 199-409 73-248 (248)
107 TIGR03286 methan_mark_15 putat 98.1 0.00022 4.8E-09 81.9 19.6 46 366-411 357-402 (404)
108 COG1924 Activator of 2-hydroxy 98.0 0.00029 6.2E-09 78.7 17.9 71 337-411 318-389 (396)
109 TIGR03286 methan_mark_15 putat 97.9 0.0008 1.7E-08 77.5 20.4 46 895-940 357-402 (404)
110 COG1924 Activator of 2-hydroxy 97.8 0.0028 6.1E-08 71.1 21.9 73 865-941 317-390 (396)
111 PF08841 DDR: Diol dehydratase 97.7 0.00074 1.6E-08 72.0 15.0 190 191-410 106-329 (332)
112 PRK13317 pantothenate kinase; 97.5 0.0056 1.2E-07 68.6 19.6 47 894-940 223-273 (277)
113 TIGR02261 benz_CoA_red_D benzo 97.5 0.0082 1.8E-07 65.8 19.2 44 367-410 214-262 (262)
114 KOG0676|consensus 97.4 0.0044 9.6E-08 71.1 16.8 193 697-918 100-315 (372)
115 KOG0676|consensus 97.3 0.0034 7.5E-08 72.0 14.7 194 168-389 100-315 (372)
116 COG4457 SrfB Uncharacterized p 97.3 0.057 1.2E-06 64.1 23.6 82 328-414 744-848 (1014)
117 PF06277 EutA: Ethanolamine ut 97.2 0.013 2.8E-07 68.6 17.8 89 169-266 87-178 (473)
118 PF08841 DDR: Diol dehydratase 97.0 0.029 6.2E-07 60.3 16.4 190 720-939 106-329 (332)
119 COG4457 SrfB Uncharacterized p 96.8 0.45 9.7E-06 56.9 25.8 82 855-941 742-846 (1014)
120 KOG0797|consensus 96.6 0.016 3.4E-07 66.9 11.9 121 140-275 195-321 (618)
121 KOG0797|consensus 96.3 0.033 7.1E-07 64.4 12.0 147 669-838 195-350 (618)
122 TIGR02259 benz_CoA_red_A benzo 96.2 0.038 8.2E-07 63.2 11.3 45 366-410 383-432 (432)
123 TIGR02259 benz_CoA_red_A benzo 96.1 0.083 1.8E-06 60.5 13.6 45 895-939 383-432 (432)
124 PRK13317 pantothenate kinase; 96.0 0.068 1.5E-06 60.0 12.7 48 364-411 222-273 (277)
125 PF02782 FGGY_C: FGGY family o 95.9 0.009 2E-07 64.1 4.9 76 865-941 120-196 (198)
126 PF02782 FGGY_C: FGGY family o 95.6 0.013 2.9E-07 62.8 4.8 70 339-412 127-196 (198)
127 COG1069 AraB Ribulose kinase [ 95.5 0.98 2.1E-05 53.8 19.8 215 713-945 232-482 (544)
128 PF06277 EutA: Ethanolamine ut 95.3 0.092 2E-06 61.7 10.5 88 699-795 88-178 (473)
129 PF14450 FtsA: Cell division p 95.3 0.043 9.4E-07 53.4 6.7 63 757-838 1-69 (120)
130 PF01869 BcrAD_BadFG: BadF/Bad 95.1 1.5 3.3E-05 49.6 19.7 69 339-410 198-271 (271)
131 PF01869 BcrAD_BadFG: BadF/Bad 95.0 5.5 0.00012 45.0 23.9 70 867-939 197-271 (271)
132 PRK15027 xylulokinase; Provisi 94.9 0.053 1.2E-06 66.9 7.6 82 861-946 357-439 (484)
133 PLN02669 xylulokinase 94.9 0.065 1.4E-06 66.9 8.3 71 869-941 422-492 (556)
134 TIGR01315 5C_CHO_kinase FGGY-f 94.8 0.074 1.6E-06 66.5 8.6 84 861-945 411-494 (541)
135 PRK15027 xylulokinase; Provisi 94.5 0.07 1.5E-06 65.9 7.3 82 331-416 356-438 (484)
136 PF14450 FtsA: Cell division p 94.4 0.11 2.4E-06 50.6 7.0 47 228-274 1-52 (120)
137 PF14574 DUF4445: Domain of un 94.4 2.7 5.9E-05 49.8 19.6 61 853-914 288-348 (412)
138 KOG0677|consensus 94.4 1.6 3.4E-05 46.5 15.4 195 696-917 101-318 (389)
139 PLN02669 xylulokinase 94.3 0.11 2.3E-06 65.0 8.3 76 331-412 416-492 (556)
140 TIGR01315 5C_CHO_kinase FGGY-f 94.3 0.11 2.4E-06 65.0 8.3 81 331-415 410-493 (541)
141 KOG0680|consensus 94.0 2.8 6.2E-05 46.3 16.9 104 167-275 93-198 (400)
142 TIGR02261 benz_CoA_red_D benzo 93.9 0.2 4.3E-06 55.2 8.4 45 895-939 213-262 (262)
143 TIGR01312 XylB D-xylulose kina 93.6 0.17 3.8E-06 62.5 8.3 52 893-945 390-441 (481)
144 PRK00047 glpK glycerol kinase; 93.5 0.16 3.4E-06 63.0 7.8 52 893-945 403-454 (498)
145 TIGR01311 glycerol_kin glycero 93.5 0.14 3.1E-06 63.3 7.3 52 893-945 399-450 (493)
146 TIGR02628 fuculo_kin_coli L-fu 93.4 0.17 3.6E-06 62.2 7.6 52 893-945 393-444 (465)
147 TIGR01234 L-ribulokinase L-rib 93.3 0.17 3.8E-06 63.2 7.7 52 893-945 435-487 (536)
148 PF14574 DUF4445: Domain of un 93.2 2.8 6.2E-05 49.6 17.0 64 325-389 289-353 (412)
149 PTZ00294 glycerol kinase-like 93.2 0.21 4.5E-06 62.0 8.0 51 894-945 407-457 (504)
150 PRK04123 ribulokinase; Provisi 93.1 0.18 3.9E-06 63.3 7.5 73 868-944 413-489 (548)
151 COG1069 AraB Ribulose kinase [ 93.0 0.74 1.6E-05 54.8 11.6 63 350-416 420-482 (544)
152 KOG2517|consensus 93.0 0.27 5.8E-06 58.8 8.1 76 339-418 392-467 (516)
153 TIGR01312 XylB D-xylulose kina 93.0 0.22 4.8E-06 61.5 8.0 81 332-416 360-441 (481)
154 PRK10331 L-fuculokinase; Provi 92.9 0.22 4.7E-06 61.3 7.7 52 893-945 389-440 (470)
155 KOG0677|consensus 92.9 1.6 3.4E-05 46.5 12.5 194 167-388 101-318 (389)
156 PRK00047 glpK glycerol kinase; 92.8 0.22 4.8E-06 61.8 7.6 80 332-415 373-453 (498)
157 KOG2517|consensus 92.8 0.33 7.2E-06 58.1 8.4 73 870-946 394-466 (516)
158 PLN02295 glycerol kinase 92.7 0.25 5.5E-06 61.4 7.8 52 893-945 412-463 (512)
159 TIGR01311 glycerol_kin glycero 92.6 0.21 4.7E-06 61.7 7.0 80 332-415 369-449 (493)
160 KOG2531|consensus 92.6 0.31 6.6E-06 56.1 7.4 55 886-941 435-489 (545)
161 TIGR02628 fuculo_kin_coli L-fu 92.5 0.25 5.5E-06 60.6 7.3 51 364-415 393-443 (465)
162 PTZ00294 glycerol kinase-like 92.4 0.39 8.6E-06 59.6 9.0 81 332-416 376-457 (504)
163 TIGR02627 rhamnulo_kin rhamnul 92.4 0.27 5.8E-06 60.2 7.4 51 893-945 387-437 (454)
164 TIGR01314 gntK_FGGY gluconate 92.3 0.27 6E-06 61.0 7.5 52 893-945 401-452 (505)
165 TIGR01234 L-ribulokinase L-rib 92.3 0.27 5.9E-06 61.5 7.5 80 331-415 405-486 (536)
166 COG0248 GppA Exopolyphosphatas 92.2 2.3 5E-05 51.7 14.7 93 147-245 53-148 (492)
167 PRK04123 ribulokinase; Provisi 92.2 0.27 5.8E-06 61.8 7.2 79 332-415 409-489 (548)
168 PLN02295 glycerol kinase 92.1 0.43 9.3E-06 59.3 8.9 83 332-415 377-462 (512)
169 KOG2531|consensus 92.0 0.4 8.7E-06 55.2 7.4 55 357-412 435-489 (545)
170 TIGR01314 gntK_FGGY gluconate 91.9 0.45 9.7E-06 59.1 8.7 80 332-415 371-451 (505)
171 PRK10331 L-fuculokinase; Provi 91.8 0.34 7.3E-06 59.6 7.4 81 331-415 358-439 (470)
172 PF01968 Hydantoinase_A: Hydan 91.8 0.49 1.1E-05 53.8 8.1 67 340-409 217-284 (290)
173 TIGR02627 rhamnulo_kin rhamnul 91.6 0.36 7.7E-06 59.1 7.2 51 364-416 387-437 (454)
174 PRK10640 rhaB rhamnulokinase; 91.5 0.39 8.5E-06 58.9 7.4 51 893-945 375-425 (471)
175 COG4819 EutA Ethanolamine util 91.5 2.9 6.4E-05 46.3 12.8 89 169-266 89-180 (473)
176 PRK10939 autoinducer-2 (AI-2) 91.4 0.39 8.5E-06 59.9 7.4 52 893-945 409-460 (520)
177 TIGR00555 panK_eukar pantothen 90.6 2.6 5.7E-05 47.2 12.1 46 892-937 229-278 (279)
178 PRK10939 autoinducer-2 (AI-2) 90.4 0.77 1.7E-05 57.2 8.7 79 332-415 379-459 (520)
179 PRK10640 rhaB rhamnulokinase; 90.3 0.56 1.2E-05 57.5 7.2 51 364-416 375-425 (471)
180 PRK10854 exopolyphosphatase; P 89.9 3.4 7.3E-05 51.2 13.5 74 715-799 102-176 (513)
181 COG0248 GppA Exopolyphosphatas 89.5 4.8 0.0001 49.0 13.9 94 675-773 52-147 (492)
182 KOG0680|consensus 89.4 18 0.00039 40.4 16.5 102 696-804 93-198 (400)
183 COG1548 Predicted transcriptio 88.1 2.5 5.4E-05 45.3 8.8 73 152-244 76-148 (330)
184 COG1070 XylB Sugar (pentulose 87.6 1.2 2.7E-05 55.0 7.7 49 893-941 401-449 (502)
185 TIGR00555 panK_eukar pantothen 87.6 5.3 0.00012 44.8 11.7 46 363-408 229-278 (279)
186 PRK09604 UGMP family protein; 87.5 30 0.00064 40.3 18.5 60 876-940 242-307 (332)
187 smart00842 FtsA Cell division 86.6 2.2 4.8E-05 45.2 7.8 28 711-738 158-185 (187)
188 PF02541 Ppx-GppA: Ppx/GppA ph 86.1 5.1 0.00011 45.6 11.1 74 186-270 77-151 (285)
189 COG1070 XylB Sugar (pentulose 86.0 2.8 6E-05 52.0 9.5 78 331-411 370-448 (502)
190 PRK09604 UGMP family protein; 85.9 35 0.00076 39.7 17.9 64 347-415 242-311 (332)
191 PRK11031 guanosine pentaphosph 85.6 6.4 0.00014 48.6 12.2 78 182-270 93-171 (496)
192 PLN02666 5-oxoprolinase 85.5 7.4 0.00016 52.9 13.4 76 331-409 454-531 (1275)
193 PRK10854 exopolyphosphatase; P 84.4 6.5 0.00014 48.8 11.6 76 183-269 99-175 (513)
194 COG1548 Predicted transcriptio 84.2 6.4 0.00014 42.3 9.5 73 681-773 76-148 (330)
195 COG4819 EutA Ethanolamine util 83.9 3.7 8E-05 45.5 7.9 39 752-795 142-180 (473)
196 PLN02666 5-oxoprolinase 83.9 6.6 0.00014 53.3 11.9 75 860-937 454-530 (1275)
197 TIGR03706 exo_poly_only exopol 81.7 10 0.00023 43.4 11.2 109 149-269 55-163 (300)
198 PRK09557 fructokinase; Reviewe 81.6 1E+02 0.0023 35.2 21.2 46 894-939 245-299 (301)
199 PRK11031 guanosine pentaphosph 80.4 7.9 0.00017 47.7 10.2 77 712-799 94-171 (496)
200 KOG0681|consensus 80.4 1.8 3.8E-05 51.2 4.2 72 861-941 535-614 (645)
201 PF07318 DUF1464: Protein of u 79.8 16 0.00034 41.9 11.3 54 892-945 259-319 (343)
202 PTZ00297 pantothenate kinase; 79.7 2E+02 0.0043 40.5 23.7 73 866-939 1365-1444(1452)
203 PF02541 Ppx-GppA: Ppx/GppA ph 79.3 11 0.00024 42.9 10.4 74 715-799 77-151 (285)
204 TIGR00744 ROK_glcA_fam ROK fam 78.1 1.1E+02 0.0024 35.3 18.5 93 673-772 33-140 (318)
205 KOG0681|consensus 76.0 2.5 5.5E-05 49.9 3.7 66 347-412 539-614 (645)
206 COG0554 GlpK Glycerol kinase [ 75.3 8.4 0.00018 45.6 7.7 68 875-946 387-454 (499)
207 TIGR03706 exo_poly_only exopol 75.1 11 0.00024 43.3 8.7 75 712-798 87-163 (300)
208 smart00842 FtsA Cell division 74.9 9 0.0002 40.5 7.5 37 142-179 43-79 (187)
209 COG2192 Predicted carbamoyl tr 74.5 2.2E+02 0.0047 35.0 20.8 81 330-414 255-337 (555)
210 PLN02939 transferase, transfer 72.9 80 0.0017 41.6 16.1 181 1077-1264 236-426 (977)
211 TIGR03281 methan_mark_12 putat 72.1 17 0.00037 40.6 8.6 50 894-945 263-315 (326)
212 PF07318 DUF1464: Protein of u 71.1 43 0.00094 38.5 11.8 71 342-416 242-319 (343)
213 PF02543 CmcH_NodU: Carbamoylt 70.8 64 0.0014 38.0 13.8 82 329-415 131-216 (360)
214 smart00732 YqgFc Likely ribonu 70.5 3.9 8.5E-05 38.0 3.1 20 1-20 1-20 (99)
215 PF03652 UPF0081: Uncharacteri 68.5 4.9 0.00011 39.9 3.3 22 1-22 1-22 (135)
216 TIGR03281 methan_mark_12 putat 67.5 22 0.00049 39.7 8.3 51 365-417 263-316 (326)
217 TIGR00744 ROK_glcA_fam ROK fam 67.1 2.4E+02 0.0052 32.4 21.2 94 143-243 32-140 (318)
218 PF03702 UPF0075: Uncharacteri 66.2 15 0.00032 43.0 7.2 71 866-941 260-337 (364)
219 COG0554 GlpK Glycerol kinase [ 65.1 27 0.00059 41.6 8.9 81 331-415 371-452 (499)
220 PRK14101 bifunctional glucokin 64.5 74 0.0016 40.8 13.8 270 562-942 20-331 (638)
221 COG0145 HyuA N-methylhydantoin 63.9 11 0.00023 47.9 5.8 43 196-244 254-296 (674)
222 PF08735 DUF1786: Putative pyr 63.9 45 0.00098 36.6 9.7 94 693-796 111-206 (254)
223 PRK09585 anmK anhydro-N-acetyl 63.8 30 0.00064 40.5 9.0 71 868-941 264-338 (365)
224 PRK00976 hypothetical protein; 62.1 38 0.00082 38.8 9.2 50 364-415 263-314 (326)
225 COG0533 QRI7 Metal-dependent p 62.0 3E+02 0.0065 31.8 17.0 54 331-389 229-286 (342)
226 PF08735 DUF1786: Putative pyr 61.8 60 0.0013 35.7 10.2 94 164-267 111-206 (254)
227 PF01968 Hydantoinase_A: Hydan 61.3 6.2 0.00013 44.9 2.9 68 867-937 215-283 (290)
228 TIGR03723 bact_gcp putative gl 61.2 2.1E+02 0.0045 33.0 15.4 57 347-408 247-309 (314)
229 smart00732 YqgFc Likely ribonu 61.0 7.3 0.00016 36.1 2.9 20 560-579 1-20 (99)
230 PF03652 UPF0081: Uncharacteri 59.1 9.9 0.00021 37.8 3.5 21 560-580 1-21 (135)
231 PRK09605 bifunctional UGMP fam 57.4 4.3E+02 0.0093 33.1 18.7 50 894-943 246-301 (535)
232 PRK00976 hypothetical protein; 57.2 36 0.00079 38.9 8.0 51 893-945 263-315 (326)
233 COG0533 QRI7 Metal-dependent p 55.8 3.8E+02 0.0082 31.0 16.0 51 862-917 231-285 (342)
234 PRK02224 chromosome segregatio 55.2 2.1E+02 0.0045 38.5 16.2 69 1078-1147 146-214 (880)
235 PF03702 UPF0075: Uncharacteri 54.4 32 0.00068 40.4 7.2 68 342-412 265-337 (364)
236 COG1940 NagC Transcriptional r 52.9 1.2E+02 0.0025 35.0 11.8 37 194-236 107-143 (314)
237 PTZ00340 O-sialoglycoprotein e 52.5 4.4E+02 0.0095 30.8 17.7 40 873-917 248-287 (345)
238 PRK09585 anmK anhydro-N-acetyl 52.1 64 0.0014 37.8 9.1 63 347-412 272-338 (365)
239 cd06007 R3H_DEXH_helicase R3H 52.1 38 0.00081 28.3 5.2 37 159-197 8-44 (59)
240 cd06007 R3H_DEXH_helicase R3H 51.8 38 0.00082 28.2 5.2 38 687-726 7-44 (59)
241 PRK00109 Holliday junction res 51.3 15 0.00032 36.7 3.4 22 559-580 3-24 (138)
242 PF00370 FGGY_N: FGGY family o 50.8 15 0.00033 40.6 3.8 18 3-20 2-19 (245)
243 PRK00109 Holliday junction res 50.8 14 0.00031 36.7 3.2 20 1-20 4-23 (138)
244 COG4012 Uncharacterized protei 50.6 65 0.0014 35.1 8.0 86 174-275 186-274 (342)
245 PF02543 CmcH_NodU: Carbamoylt 50.3 2.6E+02 0.0057 32.9 14.0 81 859-944 132-216 (360)
246 PRK03011 butyrate kinase; Prov 50.3 22 0.00048 41.7 5.1 46 893-938 295-344 (358)
247 COG2377 Predicted molecular ch 49.8 2.4E+02 0.0053 32.7 12.9 164 226-413 163-344 (371)
248 TIGR00634 recN DNA repair prot 49.7 4E+02 0.0088 33.6 16.6 21 1182-1202 297-317 (563)
249 PF12795 MscS_porin: Mechanose 49.6 1.7E+02 0.0037 32.2 11.8 99 1128-1245 10-109 (240)
250 COG2377 Predicted molecular ch 49.4 2.1E+02 0.0046 33.2 12.3 52 891-942 288-344 (371)
251 TIGR03723 bact_gcp putative gl 49.0 4.7E+02 0.01 30.1 20.1 56 876-936 247-308 (314)
252 COG0145 HyuA N-methylhydantoin 48.7 19 0.0004 45.8 4.4 86 673-773 211-296 (674)
253 COG5026 Hexokinase [Carbohydra 48.6 74 0.0016 37.5 8.6 19 560-578 75-93 (466)
254 PF00370 FGGY_N: FGGY family o 48.4 16 0.00034 40.5 3.4 19 562-580 2-20 (245)
255 COG0816 Predicted endonuclease 48.3 17 0.00036 36.2 3.1 22 1-22 2-23 (141)
256 TIGR03123 one_C_unchar_1 proba 47.7 20 0.00044 41.0 4.1 52 332-391 246-301 (318)
257 KOG0678|consensus 47.5 2.6E+02 0.0055 31.8 12.1 98 168-274 107-207 (415)
258 KOG0994|consensus 46.8 4.2E+02 0.0091 35.2 15.1 21 698-718 999-1019(1758)
259 COG5026 Hexokinase [Carbohydra 46.8 57 0.0012 38.4 7.4 18 2-19 76-93 (466)
260 PRK03011 butyrate kinase; Prov 46.7 53 0.0012 38.6 7.5 46 364-409 295-344 (358)
261 PRK09698 D-allose kinase; Prov 45.3 2E+02 0.0042 32.9 12.0 37 193-236 104-140 (302)
262 PRK14878 UGMP family protein; 45.0 5.5E+02 0.012 29.7 21.4 40 894-933 242-287 (323)
263 smart00787 Spc7 Spc7 kinetocho 44.7 5.4E+02 0.012 29.6 16.7 20 1103-1122 123-142 (312)
264 PF11593 Med3: Mediator comple 44.2 1.1E+02 0.0023 35.2 8.9 40 1140-1181 9-48 (379)
265 PRK09605 bifunctional UGMP fam 44.1 7.4E+02 0.016 31.0 19.8 51 365-415 246-302 (535)
266 cd02640 R3H_NRF R3H domain of 43.6 66 0.0014 26.9 5.4 41 685-726 5-45 (60)
267 PRK04863 mukB cell division pr 43.5 7E+02 0.015 35.4 18.2 27 861-887 193-220 (1486)
268 COG0816 Predicted endonuclease 43.4 23 0.0005 35.3 3.2 22 559-580 1-22 (141)
269 cd02640 R3H_NRF R3H domain of 42.3 90 0.0019 26.2 6.0 42 156-198 5-46 (60)
270 KOG2708|consensus 41.6 4.8E+02 0.01 28.0 12.7 53 860-917 225-278 (336)
271 KOG0994|consensus 41.0 5.8E+02 0.013 34.1 15.1 20 1103-1122 1466-1485(1758)
272 TIGR03123 one_C_unchar_1 proba 40.5 19 0.0004 41.3 2.4 52 861-920 246-301 (318)
273 KOG0964|consensus 40.5 4.2E+02 0.009 34.7 13.8 60 1184-1244 323-382 (1200)
274 KOG0250|consensus 40.2 6.3E+02 0.014 33.7 15.7 38 1234-1271 837-883 (1074)
275 KOG0996|consensus 40.1 9.3E+02 0.02 32.5 17.0 21 1076-1096 773-793 (1293)
276 PRK00039 ruvC Holliday junctio 39.8 23 0.0005 36.5 2.8 19 1-19 2-20 (164)
277 PRK09557 fructokinase; Reviewe 39.8 6.1E+02 0.013 28.8 19.5 37 194-236 97-133 (301)
278 PF00349 Hexokinase_1: Hexokin 39.7 84 0.0018 33.7 7.1 53 753-807 61-117 (206)
279 PRK09698 D-allose kinase; Prov 38.7 2.5E+02 0.0053 32.1 11.5 48 893-940 236-295 (302)
280 KOG2708|consensus 38.5 3.5E+02 0.0076 29.0 10.8 54 331-389 225-279 (336)
281 TIGR00143 hypF [NiFe] hydrogen 37.4 66 0.0014 41.5 6.8 48 893-940 658-711 (711)
282 PHA02566 alt ADP-ribosyltransf 37.3 8.9E+02 0.019 30.6 15.7 56 1211-1270 421-476 (684)
283 COG4012 Uncharacterized protei 36.9 1.3E+02 0.0029 32.8 7.7 66 728-803 208-273 (342)
284 PF03962 Mnd1: Mnd1 family; I 35.6 5.6E+02 0.012 27.1 13.2 37 1184-1238 133-169 (188)
285 PRK04863 mukB cell division pr 35.5 5.9E+02 0.013 36.1 15.7 27 1213-1239 433-463 (1486)
286 TIGR00143 hypF [NiFe] hydrogen 35.5 52 0.0011 42.4 5.5 48 364-411 658-711 (711)
287 PF00349 Hexokinase_1: Hexokin 35.5 1.3E+02 0.0027 32.4 7.6 29 225-253 62-91 (206)
288 PRK00039 ruvC Holliday junctio 35.3 31 0.00068 35.5 2.9 21 559-579 1-21 (164)
289 PF10168 Nup88: Nuclear pore c 34.8 6.5E+02 0.014 32.7 15.0 45 1158-1202 603-648 (717)
290 PTZ00340 O-sialoglycoprotein e 34.6 8.1E+02 0.017 28.7 17.1 40 345-389 249-288 (345)
291 PRK14878 UGMP family protein; 34.5 7.8E+02 0.017 28.5 20.9 24 365-388 242-265 (323)
292 PLN02920 pantothenate kinase 1 34.2 3.3E+02 0.0071 32.2 11.0 49 892-940 296-351 (398)
293 KOG1029|consensus 34.2 8.8E+02 0.019 31.0 14.7 15 1134-1148 418-432 (1118)
294 PF07106 TBPIP: Tat binding pr 33.4 2.3E+02 0.0049 29.3 9.0 88 1129-1235 69-162 (169)
295 PRK13311 N-acetyl-D-glucosamin 32.4 4E+02 0.0087 29.5 11.5 37 194-236 97-133 (256)
296 PF06160 EzrA: Septation ring 32.1 1.1E+03 0.024 29.6 17.4 115 1080-1198 114-238 (560)
297 PF08317 Spc7: Spc7 kinetochor 31.9 5.7E+02 0.012 29.7 12.9 99 1102-1203 127-226 (325)
298 COG1340 Uncharacterized archae 31.8 8E+02 0.017 27.8 14.8 88 1132-1236 62-149 (294)
299 PRK07058 acetate kinase; Provi 31.7 1.2E+02 0.0025 35.9 7.0 45 869-917 298-343 (396)
300 PRK07058 acetate kinase; Provi 31.3 2.5E+02 0.0054 33.3 9.6 47 339-389 297-344 (396)
301 PF13941 MutL: MutL protein 31.1 37 0.0008 40.9 3.0 33 562-598 2-36 (457)
302 PRK13318 pantothenate kinase; 30.6 47 0.001 37.2 3.6 20 3-22 2-21 (258)
303 TIGR00329 gcp_kae1 metallohydr 30.5 8.7E+02 0.019 27.8 18.3 214 671-917 39-282 (305)
304 PF00480 ROK: ROK family; Int 30.3 2.1E+02 0.0045 29.6 8.3 88 142-242 30-133 (179)
305 PLN03237 DNA topoisomerase 2; 30.0 1E+02 0.0022 42.4 7.0 46 1186-1233 1126-1171(1465)
306 KOG4603|consensus 29.7 2.8E+02 0.0061 28.2 8.1 72 1158-1232 89-166 (201)
307 PF00435 Spectrin: Spectrin re 29.6 3.8E+02 0.0082 24.1 9.3 23 1154-1176 30-52 (105)
308 PF06008 Laminin_I: Laminin Do 29.6 8E+02 0.017 27.4 13.3 43 1103-1148 125-169 (264)
309 KOG0979|consensus 29.6 1.5E+03 0.032 30.2 16.6 38 1224-1261 338-375 (1072)
310 PF08580 KAR9: Yeast cortical 29.2 4.3E+02 0.0094 34.0 12.0 48 1215-1262 127-175 (683)
311 PLN02377 3-ketoacyl-CoA syntha 28.9 1.4E+02 0.003 36.8 7.3 56 865-920 165-221 (502)
312 PRK13321 pantothenate kinase; 28.9 52 0.0011 36.7 3.5 19 3-21 2-20 (256)
313 PF09763 Sec3_C: Exocyst compl 28.5 8.3E+02 0.018 31.7 15.0 120 1134-1273 39-169 (701)
314 KOG0250|consensus 28.2 1.5E+03 0.032 30.6 16.1 109 1155-1277 731-840 (1074)
315 PF02074 Peptidase_M32: Carbox 28.2 1.2E+03 0.026 28.7 15.6 101 1100-1206 40-148 (494)
316 COG3426 Butyrate kinase [Energ 28.2 1.3E+02 0.0028 33.3 6.1 48 890-937 293-344 (358)
317 PF00480 ROK: ROK family; Int 27.9 2E+02 0.0044 29.7 7.8 88 672-772 31-134 (179)
318 PRK10869 recombination and rep 27.7 1.3E+03 0.028 29.0 17.0 85 1104-1200 271-355 (553)
319 KOG0517|consensus 27.6 6E+02 0.013 35.9 12.8 136 1133-1273 852-1005(2473)
320 COG3426 Butyrate kinase [Energ 27.5 78 0.0017 35.0 4.3 47 361-407 293-343 (358)
321 cd02641 R3H_Smubp-2_like R3H d 27.2 1.5E+02 0.0033 24.8 5.1 28 699-726 18-45 (60)
322 PLN02362 hexokinase 27.1 5.1E+02 0.011 32.1 11.7 36 179-214 204-241 (509)
323 PF12128 DUF3584: Protein of u 27.1 7.6E+02 0.016 34.5 14.9 46 1131-1176 742-792 (1201)
324 PLN02377 3-ketoacyl-CoA syntha 26.9 1.5E+02 0.0033 36.4 7.2 51 341-391 170-221 (502)
325 cd02641 R3H_Smubp-2_like R3H d 26.8 1.9E+02 0.0042 24.1 5.7 28 170-197 18-45 (60)
326 PF05659 RPW8: Arabidopsis bro 26.7 5.8E+02 0.013 25.8 10.2 87 1180-1275 58-147 (147)
327 PLN02362 hexokinase 26.5 97 0.0021 38.1 5.5 18 561-578 96-113 (509)
328 KOG1029|consensus 26.3 1E+03 0.022 30.4 13.5 45 1133-1179 487-531 (1118)
329 COG4296 Uncharacterized protei 26.3 1.2E+02 0.0026 29.4 4.7 23 1143-1165 90-112 (156)
330 PF08006 DUF1700: Protein of u 26.0 1.3E+02 0.0027 31.6 5.7 57 1111-1175 4-61 (181)
331 KOG2150|consensus 25.9 2.3E+02 0.005 34.7 8.2 29 1118-1151 40-68 (575)
332 cd00529 RuvC_resolvase Hollida 25.3 7.2E+02 0.016 25.2 10.9 140 757-935 2-148 (154)
333 cd02639 R3H_RRM R3H domain of 25.2 1.3E+02 0.0028 25.2 4.3 30 169-198 17-46 (60)
334 PLN02405 hexokinase 25.0 5.4E+02 0.012 31.7 11.4 36 179-214 204-241 (497)
335 PF02801 Ketoacyl-synt_C: Beta 24.8 85 0.0018 30.3 3.8 46 874-919 25-72 (119)
336 PF04848 Pox_A22: Poxvirus A22 24.7 80 0.0017 31.6 3.5 20 1-20 1-20 (143)
337 PLN02405 hexokinase 24.7 4.7E+02 0.01 32.2 10.8 39 704-742 200-240 (497)
338 PLN03170 chalcone synthase; Pr 24.6 1.8E+02 0.0039 34.8 7.3 48 345-392 108-156 (401)
339 PLN03173 chalcone synthase; Pr 24.5 1.9E+02 0.0041 34.6 7.4 46 347-392 106-152 (391)
340 cd02646 R3H_G-patch R3H domain 24.1 1.6E+02 0.0034 24.5 4.6 40 155-197 4-43 (58)
341 PF02801 Ketoacyl-synt_C: Beta 24.0 83 0.0018 30.3 3.6 46 345-390 25-72 (119)
342 COG4867 Uncharacterized protei 23.6 1.2E+03 0.026 27.5 12.6 83 1129-1230 175-261 (652)
343 PLN03172 chalcone synthase fam 23.4 1.8E+02 0.0039 34.8 6.9 48 345-392 104-152 (393)
344 TIGR03185 DNA_S_dndD DNA sulfu 23.4 7E+02 0.015 32.1 12.8 44 1101-1148 394-437 (650)
345 COG1196 Smc Chromosome segrega 23.3 5.8E+02 0.013 35.5 12.7 74 1077-1150 151-231 (1163)
346 PLN03170 chalcone synthase; Pr 23.3 2.2E+02 0.0047 34.2 7.6 52 871-922 105-157 (401)
347 PLN03173 chalcone synthase; Pr 23.3 2.2E+02 0.0049 33.9 7.7 50 872-921 102-152 (391)
348 KOG2004|consensus 23.1 3.6E+02 0.0077 34.3 9.1 133 1084-1221 266-401 (906)
349 cd02639 R3H_RRM R3H domain of 22.9 1.4E+02 0.0031 25.0 4.1 29 698-726 17-45 (60)
350 PRK10869 recombination and rep 22.8 1.6E+03 0.034 28.2 18.8 43 1185-1235 295-337 (553)
351 PF07952 Toxin_trans: Clostrid 22.7 6.2E+02 0.013 28.6 10.0 47 1181-1230 253-299 (321)
352 PRK03918 chromosome segregatio 22.4 1.6E+03 0.035 30.0 16.6 176 1080-1274 220-406 (880)
353 KOG0996|consensus 22.2 1.3E+03 0.029 31.1 14.2 28 1157-1184 474-501 (1293)
354 cd02646 R3H_G-patch R3H domain 22.2 1.8E+02 0.0039 24.1 4.7 41 683-726 3-43 (58)
355 PLN03172 chalcone synthase fam 22.1 2.1E+02 0.0045 34.3 7.1 52 870-921 100-152 (393)
356 KOG0678|consensus 22.0 1E+03 0.022 27.3 11.5 97 698-803 108-207 (415)
357 PLN02914 hexokinase 22.0 6.8E+02 0.015 30.8 11.4 41 174-214 199-241 (490)
358 TIGR02169 SMC_prok_A chromosom 21.8 7.5E+02 0.016 34.3 13.7 14 1078-1091 150-163 (1164)
359 cd00176 SPEC Spectrin repeats, 21.6 8.5E+02 0.018 25.2 11.4 39 1230-1272 118-156 (213)
360 PLN03168 chalcone synthase; Pr 21.6 2E+02 0.0043 34.4 6.8 49 344-392 102-151 (389)
361 smart00787 Spc7 Spc7 kinetocho 21.5 9.5E+02 0.021 27.6 11.9 18 1214-1231 267-284 (312)
362 KOG1385|consensus 21.3 68 0.0015 37.5 2.6 76 668-773 151-231 (453)
363 PF06008 Laminin_I: Laminin Do 21.3 1.2E+03 0.025 26.1 13.6 87 1151-1239 116-206 (264)
364 TIGR00634 recN DNA repair prot 20.4 1.8E+03 0.038 27.9 16.7 116 1103-1236 275-390 (563)
365 TIGR00763 lon ATP-dependent pr 20.3 3.3E+02 0.0071 35.9 9.0 53 1116-1168 206-260 (775)
366 PRK13318 pantothenate kinase; 20.3 93 0.002 34.8 3.5 19 562-580 2-20 (258)
367 PRK13321 pantothenate kinase; 20.2 93 0.002 34.7 3.4 19 562-580 2-20 (256)
368 PLN03168 chalcone synthase; Pr 20.1 2.4E+02 0.0051 33.7 7.0 52 870-921 99-151 (389)
No 1
>KOG0103|consensus
Probab=100.00 E-value=1.2e-117 Score=1013.52 Aligned_cols=699 Identities=48% Similarity=0.808 Sum_probs=673.9
Q ss_pred ceEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhH
Q psy7140 560 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 639 (1304)
Q Consensus 560 ~~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~ 639 (1304)
|+|+|||||..+|.+|+++.+++++|.|+.|+|.||++|+|..++|++|.+|.++..+|+.|++..+||++|+.|+||.+
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHH
Q psy7140 640 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA 719 (1304)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa 719 (1304)
|...+.+|+.++..+||.+++.+.|.|+.+.|++++|+||+|.+|+..+++.+..++.+|||+||+||++.||+++.+||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHH
Q psy7140 720 SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799 (1304)
Q Consensus 720 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l 799 (1304)
++|||++++|++|.+|+|++||++++++|...+++.+|+++|+|++++++|++.|..|+++++++.+|..+||++||..|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHH
Q psy7140 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEIC 879 (1304)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~ 879 (1304)
.+|++.+|+.+|+++++.++++..||+.+||++|+.||+| ...+++|||++++.|++..|+|++||++|.|+++|+..+
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN-~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p 319 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSAN-TELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVP 319 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcC-cCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999 468999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEeeecc
Q psy7140 880 LNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNY 959 (1304)
Q Consensus 880 i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d~~~~ 959 (1304)
+.++|+++++..+||+.|++|||+||+|.|++.|+++||+++.+++|.|||||+|||++||++||.||+++|.+.|+.||
T Consensus 320 ~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~py 399 (727)
T KOG0103|consen 320 LLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPY 399 (727)
T ss_pred HHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCCCce-eeeecCCCCCCceEEEEEEecceeEEEEEEecC--CCCCCccceeEEeecCCCCCCCCCceEEE
Q psy7140 960 PIKVAWNPVGGEDGE-NLAFSSTQPVPFTKVLTFYRANVFDVQAYYDCP--VPYPTQFVGQFIIKDIKPGPKGKPQKVKV 1036 (1304)
Q Consensus 960 ~i~i~~~~~~~~~~~-~~l~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~i~~~~i~~i~~~~~~~~~~i~v 1036 (1304)
+|.+.|+..+.+++. ..+|++|+++|++|.+||++.++|++.++|++. +|.....|++|+++++.+...|+.++++|
T Consensus 400 sIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~skVKv 479 (727)
T KOG0103|consen 400 SISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSKVKV 479 (727)
T ss_pred eEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccCCCCCceeeEEecccccCccccccceeE
Confidence 999999988777444 899999999999999999999999999999975 78788899999999999998888889999
Q ss_pred EEEEccceEEEEEeeeeeeccc---------c----------------cccceeeeeccccccCccCChHHHHHHHHHHh
Q psy7140 1037 KMTVNVHGVFSVTSASMFEDLE---------D----------------QKEMFKCDLPYDSVFNHYLANIKVHDLFELEC 1091 (1304)
Q Consensus 1037 ~~~~d~~g~l~v~~~~~~~~~~---------~----------------~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~ 1091 (1304)
.+++|.+|++++.+|.++++.+ + +.+.+..++++.....++|+..+++..++++.
T Consensus 480 kvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~ 559 (727)
T KOG0103|consen 480 KVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKEN 559 (727)
T ss_pred EEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHHHHHH
Confidence 9999999999999999876542 0 11367778888888777899999999999999
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcc
Q psy7140 1092 KMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVG 1171 (1304)
Q Consensus 1092 ~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~ 1171 (1304)
+|..+|+...++.+++|+||+|||+||++|.+.|.+|+++++|++|...|+++++|||++|+|.++..|..|+.+|+.++
T Consensus 560 ~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g 639 (727)
T KOG0103|consen 560 KMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLG 639 (727)
T ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCc
Q psy7140 1172 DPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWIEEKVSKLKSLPKHENPP 1251 (1304)
Q Consensus 1172 ~~i~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~ 1251 (1304)
+ ..|+.+...||.+++++.+.++.++..++. +..++...|++.+.|+++++.+|.+++++.+|
T Consensus 640 ~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~--------------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~p- 702 (727)
T KOG0103|consen 640 D--KKRFDENEERPKAFDELGKKIQEIRKAIES--------------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADP- 702 (727)
T ss_pred h--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC-
Confidence 9 899999999999999999999999886543 78889999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHhhcCCC
Q psy7140 1252 ITCDQIREEKYKFEKSVWSVLNKPK 1276 (1304)
Q Consensus 1252 ~~~~di~~k~~~l~~~~~~l~~kpk 1276 (1304)
+.+++++.+.+.|++.|.++.++||
T Consensus 703 v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 703 VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred CchHHHHHhhhhhccccccccccCC
Confidence 9999999999999999999999886
No 2
>KOG0100|consensus
Probab=100.00 E-value=2.8e-117 Score=939.44 Aligned_cols=602 Identities=31% Similarity=0.530 Sum_probs=570.0
Q ss_pred cceEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChh
Q psy7140 559 IMSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 638 (1304)
Q Consensus 559 ~~~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~ 638 (1304)
+..|||||||||||||+++++|.++||.|++|+|.|||+|+|++.+|++|++|+++...||+||+++.||+||+.++|+.
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~ 114 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKS 114 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChh
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCceeeecCCCceEEEEEec-CCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHH
Q psy7140 639 VQEELKSMPFQSLKQNDGSIGIKVNYL-NKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLT 717 (1304)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~ 717 (1304)
+|.+++++||+++. .++.+.+++... ++.+.|+||++++|+|.++++.|+.++|.+++++|+|||+||++.||+++++
T Consensus 115 vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 115 VQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 99999999999885 467788888766 5688999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHH
Q psy7140 718 AASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDK 797 (1304)
Q Consensus 718 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~ 797 (1304)
|..+|||+++|+||||+|||++||+.+. +.++++||||+||||||||++.+.+|.|+|+++.||.+|||++||+
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk------~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~ 267 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKK------DGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQ 267 (663)
T ss_pred cceeccceEEEeecCccHHHHHhccccc------CCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHH
Confidence 9999999999999999999999999876 4578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHH
Q psy7140 798 ILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIE 877 (1304)
Q Consensus 798 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~ 877 (1304)
++++|+.+-|+++++.|++.+.+++.+|+++||++|+.||+.. ++.+.||+++++.||+-++||..||++.-+++.+..
T Consensus 268 rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqh-q~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~Tl 346 (663)
T KOG0100|consen 268 RVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQH-QVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTL 346 (663)
T ss_pred HHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhcccc-ceEEeeeeccccccccchhhhhHHHHhhhHHHHHhh
Confidence 9999999999999999999999999999999999999999854 478999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHc-CCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEee
Q psy7140 878 ICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF-HKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDV 956 (1304)
Q Consensus 878 ~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~f-g~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d~ 956 (1304)
.|++++|+++++.+.+|+.|+||||++|||.||++|+++| |+++++.+|||||||+|||.||..||+.....++.+.|+
T Consensus 347 kPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv 426 (663)
T KOG0100|consen 347 KPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDV 426 (663)
T ss_pred HHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEee
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999988999999999
Q ss_pred ecceeEEEEccCCCCCcee-eeecCCCCCCceEEEEEEec----ceeEEEEEEecC-CCCCCccceeEEeecCCCCCCCC
Q psy7140 957 QNYPIKVAWNPVGGEDGEN-LAFSSTQPVPFTKVLTFYRA----NVFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKGK 1030 (1304)
Q Consensus 957 ~~~~i~i~~~~~~~~~~~~-~l~~~~~~~p~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~~ 1030 (1304)
+|.++||+.. ++.| .+||+|+.+|++|+..|.+. ...+|.+|+++. +..+|+.||+|.++||||+|+|.
T Consensus 427 ~pLtlGIETv-----GGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGv 501 (663)
T KOG0100|consen 427 NPLTLGIETV-----GGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGV 501 (663)
T ss_pred ccccceeeee-----cceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCC
Confidence 9999999954 4666 69999999999999999653 347899999987 88999999999999999999999
Q ss_pred CceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q psy7140 1031 PQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNAL 1110 (1304)
Q Consensus 1031 ~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~L 1110 (1304)
|+ |+|+|++|.||+|+|++. |+.++++.+++|++. ...||+++|++|+++.+++.++|+..+++.++||+|
T Consensus 502 pq-IEVtFevDangiL~VsAe-------DKgtg~~~kitItNd-~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~L 572 (663)
T KOG0100|consen 502 PQ-IEVTFEVDANGILQVSAE-------DKGTGKKEKITITND-KGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNEL 572 (663)
T ss_pred cc-EEEEEEEccCceEEEEee-------ccCCCCcceEEEecC-CCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHH
Confidence 95 999999999999999985 334677788888876 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--chhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhcc
Q psy7140 1111 EEYVYELRDGLA--NDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAM 1183 (1304)
Q Consensus 1111 Es~iy~~r~~L~--~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~ 1183 (1304)
|+|.|.+++.+. +.+...+++++++.+...+++..+||+++ +++++++|++|+++|+.+++||..+++...+
T Consensus 573 E~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n-~~a~~Ee~~ek~kele~vv~PiisklY~~ag 646 (663)
T KOG0100|consen 573 ESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN-QDASKEEFKEKKKELEAVVQPIISKLYGGAG 646 (663)
T ss_pred HHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999997 66889999999999999999999999987 9999999999999999999999999988643
No 3
>KOG0104|consensus
Probab=100.00 E-value=1e-102 Score=889.36 Aligned_cols=710 Identities=27% Similarity=0.457 Sum_probs=634.3
Q ss_pred ccceEEEEEccCccEEEEEEECC-ceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCC
Q psy7140 558 IIMSVIGIDFGTESCYLSVAKSG-GIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDD 636 (1304)
Q Consensus 558 ~~~~vvGID~Gtt~s~va~~~~g-~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~ 636 (1304)
...+|++||+||.|++||++++| +++|++|..++|++|++|+|.+++|+||++|.+++.++|++++.+++.++|+...+
T Consensus 20 ~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 20 SALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred chhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 34689999999999999999999 78999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhccCCce-eeecC-CCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHH
Q psy7140 637 PFVQEELKSMPFQ-SLKQN-DGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKA 714 (1304)
Q Consensus 637 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~ 714 (1304)
+.+..+.+++|+. ++.++ .+.+.|.+. +...|++|+++||+|.+.++.|+.+...+++++|||||.||++.||++
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~---d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~a 176 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKIS---DQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRA 176 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeC---CccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHH
Confidence 9999999998865 44443 455555543 357899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEE----------CCeEEEEEE
Q psy7140 715 LLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFV----------KGKLKVLSN 784 (1304)
Q Consensus 715 l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~----------~~~~~v~~~ 784 (1304)
+.+||++||++++.||+|.+|||+.||++++.. ....+++++|||||+|+|.++++.+. ...+++++.
T Consensus 177 ll~Aa~iagl~vLqLind~~a~Al~ygv~rRk~--i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gv 254 (902)
T KOG0104|consen 177 LLQAAQIAGLNVLQLINDGTAVALNYGVFRRKE--INETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGV 254 (902)
T ss_pred HHHHHHhcCchhhhhhccchHHHhhhhhhcccc--CCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEee
Confidence 999999999999999999999999999998643 34678999999999999999999996 148999999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecH
Q psy7140 785 VCDSEIGGRNIDKILAEYISTDFVKRYKI--DPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKR 862 (1304)
Q Consensus 785 ~~~~~lGG~~~D~~l~~~l~~~~~~~~~~--~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr 862 (1304)
++|..|||..|..+|.+|+...|.++++. +++.++|||.||.++|+++|.+||+|+. +.++||++++|+||+.+|||
T Consensus 255 Gfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANse-a~aqIEsL~ddiDFr~kvTR 333 (902)
T KOG0104|consen 255 GFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSE-AFAQIESLIDDIDFRLKVTR 333 (902)
T ss_pred ccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchh-hHHHHHHHhhccccccceeH
Confidence 99999999999999999999999998874 6889999999999999999999999985 68999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCC-CCCCCCCchhHHHhHHHHHhhH
Q psy7140 863 NDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHK-PPSTTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 863 ~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~-~~~~~~n~~eava~Gaa~~aa~ 941 (1304)
++||++|++++.|+..||+++|+.++++.++|+.|+|+||+||+|.||+.|.++.|. ++.+++|+|||+++||+++||.
T Consensus 334 e~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~ 413 (902)
T KOG0104|consen 334 EEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAH 413 (902)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999985 6899999999999999999999
Q ss_pred hcCCcccceeEEEeeecceeEEEEccCCCC----CceeeeecCCCCCCceEEEEEEe-cceeEEEEEEecCCCCCCccce
Q psy7140 942 LSPAVKIRHFDVTDVQNYPIKVAWNPVGGE----DGENLAFSSTQPVPFTKVLTFYR-ANVFDVQAYYDCPVPYPTQFVG 1016 (1304)
Q Consensus 942 ls~~~~~~~~~~~d~~~~~i~i~~~~~~~~----~~~~~l~~~~~~~p~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~i~ 1016 (1304)
||.+||+++|.+.|.++||+.+.+.+..+- .....+|++|.++|.+++++|.. ..+|.+.+.|+.- ...+.
T Consensus 414 LSksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~----~~nl~ 489 (902)
T KOG0104|consen 414 LSKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDL----GQNLT 489 (902)
T ss_pred hcccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhh----ccCcc
Confidence 999999999999999999999998765220 12236999999999999888855 4678888777641 13456
Q ss_pred eEEeecCCCCC------CCCCceEEEEEEEccceEEEEEeeeeeecc-c--c----------------------------
Q psy7140 1017 QFIIKDIKPGP------KGKPQKVKVKMTVNVHGVFSVTSASMFEDL-E--D---------------------------- 1059 (1304)
Q Consensus 1017 ~~~i~~i~~~~------~~~~~~i~v~~~~d~~g~l~v~~~~~~~~~-~--~---------------------------- 1059 (1304)
+|+|+|+...- ....+.|+++|.+|.+|++.|..++.+... . +
T Consensus 490 ~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e 569 (902)
T KOG0104|consen 490 TVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEE 569 (902)
T ss_pred EEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchh
Confidence 89999987531 123457999999999999999988765321 1 0
Q ss_pred ----c---c-------------------cce------------------eeeecccccc--CccCChHHHHHHHHHHhhh
Q psy7140 1060 ----Q---K-------------------EMF------------------KCDLPYDSVF--NHYLANIKVHDLFELECKM 1093 (1304)
Q Consensus 1060 ----~---~-------------------~~~------------------~~~~~i~~~~--~~~ls~~ei~~~~~~~~~~ 1093 (1304)
+ + +.+ .+.++|+... .+-|+...+.....+++.+
T Consensus 570 ~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~ 649 (902)
T KOG0104|consen 570 DAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDF 649 (902)
T ss_pred hhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHH
Confidence 0 0 000 0113333321 2358999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHhc-chhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccc
Q psy7140 1094 QDNDRQEKDRVDAKNALEEYVYELRDGLA-NDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGD 1172 (1304)
Q Consensus 1094 ~~~D~~~~~~~~akN~LEs~iy~~r~~L~-~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~ 1172 (1304)
.++|+.+.++++|.|+||+|+|++.++|+ +.|.++.+++|++.|.+.+..+.+||++++.+.++++|.+++.+|++++.
T Consensus 650 ~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~ 729 (902)
T KOG0104|consen 650 VQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLET 729 (902)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHh---cCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy7140 1173 PVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAF---KGDDRFSHLSKQDLSTVETAIKQHVKWIEEKVSKLKSLPKHEN 1249 (1304)
Q Consensus 1173 ~i~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~~---~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~d 1249 (1304)
.+..|..+++++|+.++.+...|+++.+|+.... .-++....+++.+++.|.+.+.++..|+++....|.++++++|
T Consensus 730 ~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d~~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~ed 809 (902)
T KOG0104|consen 730 SKNFREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKDTIFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTED 809 (902)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhccchhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccC
Confidence 9999999999999999999999999999998766 4445555799999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHhhcCCCC
Q psy7140 1250 PPITCDQIREEKYKFEKSVWSVLNKPKP 1277 (1304)
Q Consensus 1250 P~~~~~di~~k~~~l~~~~~~l~~kpkp 1277 (1304)
|+++++||..|++.|++++.+++||-|-
T Consensus 810 p~~k~kei~~K~k~Ldrev~~~lnK~k~ 837 (902)
T KOG0104|consen 810 PVLKVKEIEEKAKSLDREVLYLLNKLKI 837 (902)
T ss_pred ccccHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 9999999999999999999999998554
No 4
>KOG0100|consensus
Probab=100.00 E-value=5.3e-102 Score=823.03 Aligned_cols=490 Identities=34% Similarity=0.538 Sum_probs=460.7
Q ss_pred cEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCCceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhHH
Q psy7140 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQ 81 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~ 81 (1304)
+|||||||||||||+++++|+++||.|++|+|.+||+|+|.+++|++|+.|+++...||+|++++.||+||+.++++.+|
T Consensus 37 tvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq 116 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQ 116 (663)
T ss_pred eEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEec-CCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 82 EELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYL-NKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
.+++++||.+++. ++.+.+.|... ++.+.|+|+|+++|+|..+|+.|+
T Consensus 117 ~Dik~~Pfkvv~k-------------------------------~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AE 165 (663)
T KOG0100|consen 117 KDIKFLPFKVVNK-------------------------------DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAE 165 (663)
T ss_pred hhhhcCceEEEcC-------------------------------CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHH
Confidence 9999999998864 56677777776 447899999999999999999999
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
.|+|.+++++|+||||||+++||+++++|..+|||+++|+||||+|||++|++++.. .++++||||+|||||||
T Consensus 166 ayLGkkv~~AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~------gEknilVfDLGGGTFDV 239 (663)
T KOG0100|consen 166 AYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKD------GEKNILVFDLGGGTFDV 239 (663)
T ss_pred HHhCCcccceEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccccC------CcceEEEEEcCCceEEE
Confidence 999999999999999999999999999999999999999999999999999998864 67899999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEee
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIEC 320 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~ 320 (1304)
|++.+++|+|+|+++.||.+|||+|||+++++|+.+-|+++++.|++.+.+++++|+++||+||+.||++. ++.+.|++
T Consensus 240 SlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqh-q~riEIeS 318 (663)
T KOG0100|consen 240 SLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQH-QVRIEIES 318 (663)
T ss_pred EEEEEcCceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhcccc-ceEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 47899999
Q ss_pred ecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhc-CCCCCCCCCch
Q psy7140 321 FMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF-HKPPSTTLNQD 399 (1304)
Q Consensus 321 ~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f-~~~~~~~~np~ 399 (1304)
+++|.||+-++||..||++.-+++++...+++.+|+++++..++|+.|+|||||+|||.||++|+++| |+++.+.+|||
T Consensus 319 ~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPd 398 (663)
T KOG0100|consen 319 LFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPD 398 (663)
T ss_pred ccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 69999999999
Q ss_pred hHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeeecCC
Q psy7140 400 EAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDCPV 479 (1304)
Q Consensus 400 eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~ 479 (1304)
||||+|||.||+.+|+.....++.+.||+ |+++||++.||.|+.+|++++-+|+..++.|+++.|||..+. |.+
T Consensus 399 EAVAYGAAVQaGvlsGee~t~divLLDv~--pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~----I~v 472 (663)
T KOG0100|consen 399 EAVAYGAAVQAGVLSGEEDTGDIVLLDVN--PLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVT----IQV 472 (663)
T ss_pred HHHHhhhhhhhcccccccCcCcEEEEeec--cccceeeeecceeeccccCCcccCccccceeeecccCCceEE----EEE
Confidence 99999999999999999888899999998 788888999999999999999999999999999999966553 433
Q ss_pred CCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcceEEEeeeecccCCccccceeeeehhhhhhhhhhhhccccccccc
Q psy7140 480 PYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQVRYGYGWYTTTPTTAVCPIVDMIVRQEDEKKRLMFSRYHNVQII 559 (1304)
Q Consensus 480 ~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 559 (1304)
+.||++++++|..||+|.+.||||+| .++|||+++ |.++++ ..
T Consensus 473 -------yEGER~mtkdn~lLGkFdltGipPAP----------------RGvpqIEVt------------FevDan--gi 515 (663)
T KOG0100|consen 473 -------YEGERPMTKDNHLLGKFDLTGIPPAP----------------RGVPQIEVT------------FEVDAN--GI 515 (663)
T ss_pred -------eeccccccccccccccccccCCCCCC----------------CCCccEEEE------------EEEccC--ce
Confidence 45789999999999999999999999 568888888 888887 45
Q ss_pred ceEEEEEccCccE
Q psy7140 560 MSVIGIDFGTESC 572 (1304)
Q Consensus 560 ~~vvGID~Gtt~s 572 (1304)
..|-+-|=||-+.
T Consensus 516 L~VsAeDKgtg~~ 528 (663)
T KOG0100|consen 516 LQVSAEDKGTGKK 528 (663)
T ss_pred EEEEeeccCCCCc
Confidence 5666777777543
No 5
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=2.5e-94 Score=897.52 Aligned_cols=605 Identities=29% Similarity=0.524 Sum_probs=556.4
Q ss_pred cccceEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCC
Q psy7140 557 QIIMSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDD 636 (1304)
Q Consensus 557 ~~~~~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~ 636 (1304)
|..+.+||||||||||+||++++|++++|+|..|+|.+||+|+|.++++++|..|..+..++|+++++++||+||+.+++
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 80 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDD 80 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHH
Q psy7140 637 PFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALL 716 (1304)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~ 716 (1304)
+.++...+.+||.++..+++...+.+.+.++...++|+++++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 160 (653)
T PTZ00009 81 SVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATK 160 (653)
T ss_pred hhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHH
Confidence 99999999999999988889888988888878899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHH
Q psy7140 717 TAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNID 796 (1304)
Q Consensus 717 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D 796 (1304)
+||++|||++++|++||+|||++|++.+.. ..+.++|||||||||||+||+++.++.++++++.|+.++||++||
T Consensus 161 ~Aa~~AGl~v~~li~EptAAAl~y~~~~~~-----~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D 235 (653)
T PTZ00009 161 DAGTIAGLNVLRIINEPTAAAIAYGLDKKG-----DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFD 235 (653)
T ss_pred HHHHHcCCceeEEecchHHHHHHHhhhccC-----CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHH
Confidence 999999999999999999999999976531 246789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHH
Q psy7140 797 KILAEYISTDFVKRY-KIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGR 875 (1304)
Q Consensus 797 ~~l~~~l~~~~~~~~-~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~ 875 (1304)
..|++|+.++|..++ +.++..+++++.||+.+||++|+.||.+. .+.+.+++++++.|++++|||++||++|++++++
T Consensus 236 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~-~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~ 314 (653)
T PTZ00009 236 NRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSST-QATIEIDSLFEGIDYNVTISRARFEELCGDYFRN 314 (653)
T ss_pred HHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCc-eEEEEEEeccCCceEEEEECHHHHHHHHHHHHHH
Confidence 999999999998887 47788899999999999999999999876 4689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcC-CCCCCCCCchhHHHhHHHHHhhHhcCC--cccceeE
Q psy7140 876 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSRGCALQCAILSPA--VKIRHFD 952 (1304)
Q Consensus 876 i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg-~~~~~~~n~~eava~Gaa~~aa~ls~~--~~~~~~~ 952 (1304)
+..+++++|++++++..+|+.|+||||+||||+||++|+++|+ .++..++|||+|||+|||++|+++++. ++++++.
T Consensus 315 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~ 394 (653)
T PTZ00009 315 TLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLL 394 (653)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceE
Confidence 9999999999999999999999999999999999999999996 578899999999999999999999985 7889999
Q ss_pred EEeeecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEec----ceeEEEEEEecC-CCCCCccceeEEeecCCCCC
Q psy7140 953 VTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRA----NVFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGP 1027 (1304)
Q Consensus 953 ~~d~~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~ 1027 (1304)
+.|++||+||++.. .+...+||++|+++|++++.+|.+. ..+.|.+|+++. ...+|..||+|.|+++++.+
T Consensus 395 ~~dv~p~slgi~~~----~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~ 470 (653)
T PTZ00009 395 LLDVTPLSLGLETA----GGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAP 470 (653)
T ss_pred EEeecccccCcccc----CCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCC
Confidence 99999999999743 2345689999999999999999543 258999999987 66788999999999999998
Q ss_pred CCCCceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHH
Q psy7140 1028 KGKPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAK 1107 (1304)
Q Consensus 1028 ~~~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~ak 1107 (1304)
.+.+ +|+|+|++|.||+|+|++.+. .+++...+++... ..+|+.++++++++++.+|..+|+.++++.++|
T Consensus 471 ~g~~-~i~v~f~id~~Gil~v~~~~~-------~t~~~~~~~i~~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eak 541 (653)
T PTZ00009 471 RGVP-QIEVTFDIDANGILNVSAEDK-------STGKSNKITITND-KGRLSKADIDRMVNEAEKYKAEDEANRERVEAK 541 (653)
T ss_pred CCCc-eEEEEEEECCCCeEEEEEecc-------cCCceeeEEEeec-cccccHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8876 699999999999999997532 2234445555533 367999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-chhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhh
Q psy7140 1108 NALEEYVYELRDGLA-NDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEY 1181 (1304)
Q Consensus 1108 N~LEs~iy~~r~~L~-~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 1181 (1304)
|+||+|||++|++|+ +.+.+++++++|++|.+.++++++|||+ +++++.++|++|+++|+++++||..|++..
T Consensus 542 N~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~ 615 (653)
T PTZ00009 542 NGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEK-NQLAEKEEFEHKQKEVESVCNPIMTKMYQA 615 (653)
T ss_pred hhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999997 4588999999999999999999999995 588999999999999999999999998755
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.2e-93 Score=881.69 Aligned_cols=606 Identities=24% Similarity=0.455 Sum_probs=548.5
Q ss_pred eEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEe-CCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhH
Q psy7140 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFS-DKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 639 (1304)
Q Consensus 561 ~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~ 639 (1304)
.|||||||||||+||++.+|.+.+|.|..|.|.|||+|+|. ++++++|..|..++..+|+++++++||+||+++.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~ 80 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--L 80 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--h
Confidence 58999999999999999999999999999999999999997 46899999999999999999999999999999865 4
Q ss_pred HHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHH
Q psy7140 640 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA 719 (1304)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa 719 (1304)
+.....+||.+...++|.+.+.+.. .+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~--~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 158 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPR--LEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 5566789999998888888877643 35789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHH
Q psy7140 720 SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799 (1304)
Q Consensus 720 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l 799 (1304)
++|||++++||+||+|||++|++.+ ..+.++||||+||||||+||+++.++.++|+++.|+.++||++||.+|
T Consensus 159 ~~AGl~v~~li~EPtAAAlayg~~~-------~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l 231 (668)
T PRK13410 159 RIAGLEVERILNEPTAAALAYGLDR-------SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRI 231 (668)
T ss_pred HHcCCCeEEEecchHHHHHHhcccc-------CCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHH
Confidence 9999999999999999999998754 246789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCC----cceEEEecHHHHHHHHHHHHHH
Q psy7140 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDD----KDVHAELKRNDLETLCEHIFGR 875 (1304)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~ 875 (1304)
++|+.++|..+++.++..+++++.+|+.+||++|+.||.+.. ..+.++.++.+ .++...|||++||++|++++++
T Consensus 232 ~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~-~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r 310 (668)
T PRK13410 232 VDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSV-TDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDR 310 (668)
T ss_pred HHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc-eEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764 57888877643 4788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEe
Q psy7140 876 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTD 955 (1304)
Q Consensus 876 i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d 955 (1304)
+..+|+++|+++++++.+|+.|+||||+||||+|++.|+++||.++..++|||||||+|||++|+++++. ++++.+.|
T Consensus 311 ~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~l~D 388 (668)
T PRK13410 311 LLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE--LKDLLLLD 388 (668)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc--ccceeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984 67899999
Q ss_pred eecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEec----ceeEEEEEEecC-CCCCCccceeEEeecCCCCCCCC
Q psy7140 956 VQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRA----NVFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKGK 1030 (1304)
Q Consensus 956 ~~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~~ 1030 (1304)
++||+||+++.+ +...+||++|+++|++++.+|.+. ..+.|.+++|+. ...+|..||+|.|+++++.+.|.
T Consensus 389 v~p~slgie~~~----g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~ 464 (668)
T PRK13410 389 VTPLSLGLETIG----GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGV 464 (668)
T ss_pred eccccccceecC----CeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCC
Confidence 999999998752 345589999999999999999653 257788888876 67889999999999999999988
Q ss_pred CceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q psy7140 1031 PQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNAL 1110 (1304)
Q Consensus 1031 ~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~L 1110 (1304)
+ +|+|+|++|.||+|+|++.+. .+++...++|.. ..+||.++++++++++.+|..+|+.++++.++||+|
T Consensus 465 ~-~I~v~f~id~nGiL~V~a~d~-------~tg~~~~~~i~~--~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~ 534 (668)
T PRK13410 465 P-QVQVAFDIDANGILQVSATDR-------TTGREQSVTIQG--ASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRA 534 (668)
T ss_pred C-eEEEEEEECCCcEEEEEEEEc-------CCCceeeeeecc--cccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6 699999999999999998532 234445556654 368999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc---hhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhccChhH
Q psy7140 1111 EEYVYELRDGLAN---DKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAMRPNI 1187 (1304)
Q Consensus 1111 Es~iy~~r~~L~~---~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~rp~~ 1187 (1304)
|+|||++|++|.+ .+..++++++|++|..+|+++++|||+++.+..++.+.++++.|+.++.++..|+.| +-..-
T Consensus 535 e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~ 612 (668)
T PRK13410 535 LTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE--EDEGP 612 (668)
T ss_pred HHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccch
Confidence 9999999999963 588999999999999999999999999888888899999999999999999999999 33344
Q ss_pred HHHHHHHHH
Q psy7140 1188 LEEYKHSVQ 1196 (1304)
Q Consensus 1188 ~~~l~~~l~ 1196 (1304)
++.+++.+.
T Consensus 613 ~~~~~~~~~ 621 (668)
T PRK13410 613 LQGIKNTFG 621 (668)
T ss_pred hhhHHhhcc
Confidence 555665554
No 7
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.2e-91 Score=871.73 Aligned_cols=587 Identities=27% Similarity=0.493 Sum_probs=538.4
Q ss_pred ceEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeC-CceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChh
Q psy7140 560 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSD-KNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 638 (1304)
Q Consensus 560 ~~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~ 638 (1304)
.++||||||||||+||++.+|++++++|..|+|.+||+|+|.+ +++++|..|..+..++|.++++++||+||+.++++.
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 4699999999999999999999999999999999999999975 589999999999999999999999999999999999
Q ss_pred HHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHH
Q psy7140 639 VQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTA 718 (1304)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~A 718 (1304)
++...+.+||.++..+++.+.+.+. +..++|+++++|+|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQ----GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 9999999999999888888777663 578999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHH
Q psy7140 719 ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKI 798 (1304)
Q Consensus 719 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~ 798 (1304)
|++|||++++|++||+|||++|++.. ..++++|||||||||||+||+++.++.++|+++.|+.++||++||..
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~-------~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~ 269 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDK-------NDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQR 269 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhcccc-------CCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHH
Confidence 99999999999999999999998753 24679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCC----cceEEEecHHHHHHHHHHHHH
Q psy7140 799 LAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDD----KDVHAELKRNDLETLCEHIFG 874 (1304)
Q Consensus 799 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~ 874 (1304)
|++|+.++|.++++.++..+++++.+|+.+||++|+.||.+.. ..+.++.+..+ .++.++|||++||++|+++++
T Consensus 270 l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~-~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~ 348 (663)
T PTZ00400 270 ILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQ-TEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLK 348 (663)
T ss_pred HHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCc-eEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764 57788877654 478999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEE
Q psy7140 875 RIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVT 954 (1304)
Q Consensus 875 ~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~ 954 (1304)
++..+++++|+++++++.+|+.|+||||+||+|+||+.|+++||.++..++|||++||+|||++|+++++. ++++.+.
T Consensus 349 ~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~ 426 (663)
T PTZ00400 349 KTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLL 426 (663)
T ss_pred HHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC--ccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999885 6789999
Q ss_pred eeecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEec----ceeEEEEEEecC-CCCCCccceeEEeecCCCCCCC
Q psy7140 955 DVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRA----NVFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKG 1029 (1304)
Q Consensus 955 d~~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~ 1029 (1304)
|++||+||+++.+ +...++|++|+++|++++.+|.+. ..+.|.+|+|+. .+.+|..||+|.|.++++.+.|
T Consensus 427 dv~p~slgi~~~~----g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g 502 (663)
T PTZ00400 427 DVTPLSLGIETLG----GVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRG 502 (663)
T ss_pred eccccceEEEecC----CeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCC
Confidence 9999999999752 345689999999999999998654 248899999887 7788899999999999999988
Q ss_pred CCceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHH
Q psy7140 1030 KPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNA 1109 (1304)
Q Consensus 1030 ~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~ 1109 (1304)
.+ +|+|+|.+|.||+|+|++.+. .+++...+++... .+||.++++++.+++++|..+|++++++.++||+
T Consensus 503 ~~-~i~v~f~id~~Gil~v~a~~~-------~~~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~ 572 (663)
T PTZ00400 503 VP-QIEVTFDVDANGIMNISAVDK-------STGKKQEITIQSS--GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNE 572 (663)
T ss_pred Cc-eEEEEEEECCCCCEEEEEEec-------cCCcEEEEEeecc--ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 76 699999999999999987532 2344455566543 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHH
Q psy7140 1110 LEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAM 1179 (1304)
Q Consensus 1110 LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~ 1179 (1304)
||+|||++|++|.+ +..++++++|+.+.+.++++++|||++ +.++|++++++|++++.++..+++
T Consensus 573 lEs~iy~~r~~l~e-~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i~~k~~eL~~~l~~l~~k~y 637 (663)
T PTZ00400 573 AETLIYSVEKQLSD-LKDKISDADKDELKQKITKLRSTLSSE----DVDSIKDKTKQLQEASWKISQQAY 637 (663)
T ss_pred HHHHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999974 888999999999999999999999865 478999999999999999987654
No 8
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.9e-91 Score=866.48 Aligned_cols=589 Identities=26% Similarity=0.460 Sum_probs=534.3
Q ss_pred eEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeC-CceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhH
Q psy7140 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSD-KNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 639 (1304)
Q Consensus 561 ~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~ 639 (1304)
.+||||||||||+||++.+|.+.+|+|.+|+|.+||+|+|.+ +++++|..|..+..++|+++++++||+||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~- 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE- 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh-
Confidence 589999999999999999999999999999999999999975 589999999999999999999999999999998864
Q ss_pred HHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHH
Q psy7140 640 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA 719 (1304)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa 719 (1304)
...+++||.++...++.+.+.+. +..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 82 -~~~~~~~~~~v~~~~~~~~~~i~----~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 -EERSRVPYTCVKGRDDTVNVQIR----GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred -HHhhcCCceEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 45678999999888888777663 4689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHH
Q psy7140 720 SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799 (1304)
Q Consensus 720 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l 799 (1304)
++|||++++|++||+|||++|++.+. ..+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~------~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l 230 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQ------DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCI 230 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhccccc------CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHH
Confidence 99999999999999999999998543 346789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCC----cceEEEecHHHHHHHHHHHHHH
Q psy7140 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDD----KDVHAELKRNDLETLCEHIFGR 875 (1304)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~ 875 (1304)
++|+.++|..+++.++..+++++.||+.+||++|+.||.+.. ..+++++++.+ .++++.|||++||++|++++++
T Consensus 231 ~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~-~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~ 309 (653)
T PRK13411 231 VDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLT-TSINLPFITADETGPKHLEMELTRAKFEELTKDLVEA 309 (653)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc-eEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998664 57888876543 5789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcC-CCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEE
Q psy7140 876 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVT 954 (1304)
Q Consensus 876 i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg-~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~ 954 (1304)
+..+++++|+++++.+++|+.|+||||+||||+||+.|+++|| ..+..++|||+|||+|||++|+.+++. ++++.+.
T Consensus 310 ~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~ 387 (653)
T PRK13411 310 TIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE--VKDLLLL 387 (653)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC--ccceeee
Confidence 9999999999999999999999999999999999999999996 678899999999999999999999985 7889999
Q ss_pred eeecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEe--cc--eeEEEEEEecC-CCCCCccceeEEeecCCCCCCC
Q psy7140 955 DVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYR--AN--VFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKG 1029 (1304)
Q Consensus 955 d~~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~--~~--~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~ 1029 (1304)
|++||+||+++.+ +...+||++|+++|++++.+|.+ ++ .+.|.+|+++. .+.+|..||+|.|.++++.+.|
T Consensus 388 dv~p~slgi~~~~----~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g 463 (653)
T PRK13411 388 DVTPLSLGIETLG----EVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRG 463 (653)
T ss_pred ecccceeeEEecC----CceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCC
Confidence 9999999998752 34568999999999999999975 33 47788888877 6778999999999999999988
Q ss_pred CCceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHH
Q psy7140 1030 KPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNA 1109 (1304)
Q Consensus 1030 ~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~ 1109 (1304)
.+ +|+|+|++|.||+|+|++.+.. +++...+.+.. ..+||.++++++++++++|..+|++++++.++||+
T Consensus 464 ~~-~i~v~f~id~~Gil~v~a~d~~-------t~~~~~~~i~~--~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~ 533 (653)
T PRK13411 464 VP-QIEVSFEIDVNGILKVSAQDQG-------TGREQSIRITN--TGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQ 533 (653)
T ss_pred Cc-cEEEEEEECCCCeEEEEEeecc-------CCceEeeEEec--cccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 76 5999999999999999985322 23333444443 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhh
Q psy7140 1110 LEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEY 1181 (1304)
Q Consensus 1110 LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 1181 (1304)
||+|||.+|++|.+ +.+++++++|+++.+.++++++||++ .+++.++|++++++|++.+.++..++++.
T Consensus 534 lEs~iy~~r~~l~~-~~~~~~~~er~~i~~~l~~~~~wL~~--~~~~~~~~~~~~~el~~~~~~i~~~~y~~ 602 (653)
T PRK13411 534 ADSLLYSYESTLKE-NGELISEELKQRAEQKVEQLEAALTD--PNISLEELKQQLEEFQQALLAIGAEVYQQ 602 (653)
T ss_pred HHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999974 68899999999999999999999997 35689999999999999999999887653
No 9
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=7.2e-90 Score=846.97 Aligned_cols=588 Identities=24% Similarity=0.430 Sum_probs=535.9
Q ss_pred ceEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhH
Q psy7140 560 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 639 (1304)
Q Consensus 560 ~~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~ 639 (1304)
..+||||||||||+||++.+|+++++.|..|.|.+||+|+|.++++++|..|..+...+|.++++++||+||+.++++.+
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v 106 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHI 106 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHH
Q psy7140 640 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA 719 (1304)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa 719 (1304)
+...+.+||.++..+++...+.. ..+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 107 ~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 107 QKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 99999999999988877766543 335789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHH
Q psy7140 720 SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799 (1304)
Q Consensus 720 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l 799 (1304)
++|||++++|++||+|||++|++.. ..++++||||+||||||+||+++.++.++|+++.||.+|||++||.+|
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~-------~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l 256 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDK-------TKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLAL 256 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccC-------CCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHH
Confidence 9999999999999999999998754 235789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCC----cceEEEecHHHHHHHHHHHHHH
Q psy7140 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDD----KDVHAELKRNDLETLCEHIFGR 875 (1304)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~ 875 (1304)
++|+.++|..+++.++..+++++.+|+.+||++|+.||.+.. ..+.++.+..+ .+++.+|||++||++|++++++
T Consensus 257 ~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~-~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r 335 (657)
T PTZ00186 257 SDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME-TEVNLPFITANADGAQHIQMHISRSKFEGITQRLIER 335 (657)
T ss_pred HHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc-eEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998654 57777766432 4689999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEe
Q psy7140 876 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTD 955 (1304)
Q Consensus 876 i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d 955 (1304)
+..+++++|+++++++.+|+.|+||||+||||.||++|+++||.++...+|||||||+|||++|+++++. ++++.+.|
T Consensus 336 ~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~--~~~~~l~D 413 (657)
T PTZ00186 336 SIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD--VKGLVLLD 413 (657)
T ss_pred HHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc--cCceEEEe
Confidence 9999999999999999999999999999999999999999999888899999999999999999999985 57899999
Q ss_pred eecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEec----ceeEEEEEEecC-CCCCCccceeEEeecCCCCCCCC
Q psy7140 956 VQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRA----NVFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKGK 1030 (1304)
Q Consensus 956 ~~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~~ 1030 (1304)
++||+|||++.+ +...+||++|+++|++++.+|.+. ..+.|.+|+|+. .+.+|..||+|.|.|+||.|.|.
T Consensus 414 v~p~slgie~~~----g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~ 489 (657)
T PTZ00186 414 VTPLSLGIETLG----GVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGV 489 (657)
T ss_pred eccccccceecC----CEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCC
Confidence 999999999752 345589999999999999999664 258899999987 77889999999999999999998
Q ss_pred CceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q psy7140 1031 PQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNAL 1110 (1304)
Q Consensus 1031 ~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~L 1110 (1304)
+ +|+|+|++|.||+|+|++.+.. +++...+.|... ..|++++++++.++.+++..+|+..+++.+++|++
T Consensus 490 ~-~I~Vtf~iD~nGiL~V~a~d~~-------tg~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~ 559 (657)
T PTZ00186 490 P-QIEVTFDIDANGICHVTAKDKA-------TGKTQNITITAN--GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNA 559 (657)
T ss_pred C-cEEEEEEEcCCCEEEEEEEEcc-------CCcEEEEEeccC--ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 7 5999999999999999986432 345556666543 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHH
Q psy7140 1111 EEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRA 1178 (1304)
Q Consensus 1111 Es~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~ 1178 (1304)
|+++|.++..+.+. ..+++++++.+.+.++..++||.. .+.+.+.+++++++|++.+.++..++
T Consensus 560 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~~ 623 (657)
T PTZ00186 560 ETQLTTAERQLGEW--KYVSDAEKENVKTLVAELRKAMEN--PNVAKDDLAAATDKLQKAVMECGRTE 623 (657)
T ss_pred HHHHHHHHHHhhhh--ccCCHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999642 468999999999999999999973 34567899999999999999987654
No 10
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.5e-89 Score=856.39 Aligned_cols=585 Identities=28% Similarity=0.476 Sum_probs=535.3
Q ss_pred eEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEe-CCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhH
Q psy7140 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFS-DKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 639 (1304)
Q Consensus 561 ~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~ 639 (1304)
.+||||||||||+||++++|.+++++|..|+|.+||+|+|. ++++++|..|..+..++|.++++++||+||+. ++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~ 80 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEV 80 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHH
Confidence 58999999999999999999999999999999999999997 67899999999999999999999999999998 6678
Q ss_pred HHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHH
Q psy7140 640 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA 719 (1304)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa 719 (1304)
+...+.+||+++..++|...+.+. +..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 81 ~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 156 (627)
T PRK00290 81 QKDIKLVPYKIVKADNGDAWVEID----GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAG 156 (627)
T ss_pred HHHhhcCCeEEEEcCCCceEEEEC----CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 888899999999888887776653 4789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHH
Q psy7140 720 SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799 (1304)
Q Consensus 720 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l 799 (1304)
++|||++++|++||+|||++|++.+ ..++++|||||||||||+|++++.++.++++++.|+.++||++||.+|
T Consensus 157 ~~AGl~v~~li~EptAAAl~y~~~~-------~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l 229 (627)
T PRK00290 157 KIAGLEVLRIINEPTAAALAYGLDK-------KGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRI 229 (627)
T ss_pred HHcCCceEEEecchHHHHHHhhhcc-------CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHH
Confidence 9999999999999999999998754 145889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCC----cceEEEecHHHHHHHHHHHHHH
Q psy7140 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDD----KDVHAELKRNDLETLCEHIFGR 875 (1304)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~ 875 (1304)
++|+.++|..+++.++..+++++.||+.+||++|+.||.+.. ..+.++.++.+ .++.++|||++|+++|++++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~-~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~ 308 (627)
T PRK00290 230 IDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQ-TEINLPFITADASGPKHLEIKLTRAKFEELTEDLVER 308 (627)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCe-EEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764 57888877643 6789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEe
Q psy7140 876 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTD 955 (1304)
Q Consensus 876 i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d 955 (1304)
+..+|+++|+.++++..+|+.|+||||+||+|+|++.|+++||.++..++||++|||+|||++|+.+++ +++++.+.|
T Consensus 309 ~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~--~~~~~~~~d 386 (627)
T PRK00290 309 TIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAG--DVKDVLLLD 386 (627)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcC--Cccceeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 467899999
Q ss_pred eecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEecc----eeEEEEEEecC-CCCCCccceeEEeecCCCCCCCC
Q psy7140 956 VQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRAN----VFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKGK 1030 (1304)
Q Consensus 956 ~~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~~----~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~~ 1030 (1304)
++||+||+++.+ +...+||++|+++|++++.+|.+.. .+.|.+|+++. ...+|..||+|.|+++++.+.|.
T Consensus 387 ~~~~slgi~~~~----~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~ 462 (627)
T PRK00290 387 VTPLSLGIETLG----GVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGV 462 (627)
T ss_pred ccceEEEEEecC----CeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCC
Confidence 999999998742 3456899999999999999997643 47899999987 66788999999999999998887
Q ss_pred CceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHHH
Q psy7140 1031 PQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNAL 1110 (1304)
Q Consensus 1031 ~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~L 1110 (1304)
+ +|+|+|++|.||+|+|++.+.. +++...+.+.. ..+|+.++++++++++.+|..+|++.+++.++||+|
T Consensus 463 ~-~i~v~f~~d~~gil~v~a~~~~-------~~~~~~~~i~~--~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~l 532 (627)
T PRK00290 463 P-QIEVTFDIDANGIVHVSAKDKG-------TGKEQSITITA--SSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQA 532 (627)
T ss_pred c-eEEEEEEECCCceEEEEEEEcc-------CCceeEEEecc--ccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Confidence 6 5999999999999999985322 23444555543 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHh
Q psy7140 1111 EEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAME 1180 (1304)
Q Consensus 1111 Es~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e 1180 (1304)
|+|+|.+|++|+ ++..++++++|++|.+.|+++++|||++ +.++|++++++|+++++++..|+++
T Consensus 533 e~~i~~~~~~l~-~~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 533 DSLIYQTEKTLK-ELGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999997 5788999999999999999999999865 5789999999999999999988765
No 11
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.7e-89 Score=852.43 Aligned_cols=591 Identities=26% Similarity=0.451 Sum_probs=531.8
Q ss_pred ceEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeC-CceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChh
Q psy7140 560 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSD-KNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 638 (1304)
Q Consensus 560 ~~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~ 638 (1304)
..|||||||||||+||++.+|.+++++|.+|+|.+||+|+|.+ +++++|..|..+..++|.++++++||+||+.+.+
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 3699999999999999999999999999999999999999974 5899999999999999999999999999999876
Q ss_pred HHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHH
Q psy7140 639 VQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTA 718 (1304)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~A 718 (1304)
++...+.+||.++..+++.+.+.+... +..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 456677899999988888887776432 468999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHH
Q psy7140 719 ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKI 798 (1304)
Q Consensus 719 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~ 798 (1304)
|++|||++++|++||+|||++|++.+ ..+.++||||+||||||+|++++.++.++|+++.|+.++||++||+.
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~-------~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~ 267 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEK-------KSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 267 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhccc-------CCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence 99999999999999999999998754 23578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecC----CcceEEEecHHHHHHHHHHHHH
Q psy7140 799 LAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMD----DKDVHAELKRNDLETLCEHIFG 874 (1304)
Q Consensus 799 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~----~~d~~~~itr~efe~l~~~~~~ 874 (1304)
|++|+..+|..+++.++..+++++.||+.+||++|+.||.+.. +.+.++++.. +.+++.+|||++||++|+++++
T Consensus 268 L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~-~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~ 346 (673)
T PLN03184 268 IVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQ-TSISLPFITATADGPKHIDTTLTRAKFEELCSDLLD 346 (673)
T ss_pred HHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCc-ceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764 5677776643 3578999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEE
Q psy7140 875 RIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVT 954 (1304)
Q Consensus 875 ~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~ 954 (1304)
++..+|+++|+++++++.+|+.|+||||+||||+||+.|+++||.++..++|||||||+|||++|+++++ +++++.+.
T Consensus 347 r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~--~~~~~~~~ 424 (673)
T PLN03184 347 RCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAG--EVSDIVLL 424 (673)
T ss_pred HHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhcc--CccceEEE
Confidence 9999999999999999999999999999999999999999999998899999999999999999999998 46789999
Q ss_pred eeecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEec--c--eeEEEEEEecC-CCCCCccceeEEeecCCCCCCC
Q psy7140 955 DVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRA--N--VFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKG 1029 (1304)
Q Consensus 955 d~~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~--~--~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~ 1029 (1304)
|++||+|||++.+ +...+||++|+++|++++.+|.+. + .+.|.+|+++. ...+|..||+|.|+++++.+.+
T Consensus 425 dv~p~slgi~~~~----~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g 500 (673)
T PLN03184 425 DVTPLSLGLETLG----GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG 500 (673)
T ss_pred ecccccceEEecC----CeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCC
Confidence 9999999999852 345689999999999999999654 3 35667777766 6778999999999999999988
Q ss_pred CCceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHH
Q psy7140 1030 KPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNA 1109 (1304)
Q Consensus 1030 ~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~ 1109 (1304)
.+ +|+|+|.+|.||+|+|++.+.. +.+...+.+.. ..+||.++++++++++++|..+|+.++++.++||+
T Consensus 501 ~~-~i~v~f~id~~GiL~V~a~~~~-------t~~~~~~~i~~--~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~ 570 (673)
T PLN03184 501 VP-QIEVKFDIDANGILSVSATDKG-------TGKKQDITITG--ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQ 570 (673)
T ss_pred Cc-eEEEEEEeCCCCeEEEEEEecC-------CCeEEEEEecc--cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 76 5999999999999999986322 33444555553 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhcc
Q psy7140 1110 LEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAM 1183 (1304)
Q Consensus 1110 LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~ 1183 (1304)
||+|||++|++|. ++.+++++++|+++.+.|++.++|||++ +.+++++++++|.+.+.++..+++...+
T Consensus 571 lE~~iy~~r~~l~-e~~~~~~~eer~~l~~~l~~~e~wL~~~----d~~~ik~~~~~l~~~l~~l~~~~~~~~~ 639 (673)
T PLN03184 571 ADSVVYQTEKQLK-ELGDKVPADVKEKVEAKLKELKDAIASG----STQKMKDAMAALNQEVMQIGQSLYNQPG 639 (673)
T ss_pred HHHHHHHHHHHHH-HHhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999996 4888999999999999999999999965 3568888888888888888887765553
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.9e-88 Score=842.76 Aligned_cols=588 Identities=27% Similarity=0.456 Sum_probs=532.4
Q ss_pred ceEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeC-CceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChh
Q psy7140 560 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSD-KNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 638 (1304)
Q Consensus 560 ~~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~ 638 (1304)
+.+||||||||||+||++.+|.+++++|..|.|.+||+|+|.+ +++++|..|..+...+|.++++++||+||+.+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 4699999999999999999999999999999999999999975 4799999999999999999999999999999865
Q ss_pred HHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHH
Q psy7140 639 VQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTA 718 (1304)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~A 718 (1304)
+....+.+||.++..++|.+.+.+.. .+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~--~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPA--LNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 55666779999998888888776543 3468999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHH
Q psy7140 719 ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKI 798 (1304)
Q Consensus 719 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~ 798 (1304)
|++|||++++|++||+|||++|+... ..+.++||||+||||||+||+++.++.++|+++.|+.++||++||..
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~-------~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~ 230 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDK-------KNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK 230 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhcccc-------CCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence 99999999999999999999998753 24578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecC----CcceEEEecHHHHHHHHHHHHH
Q psy7140 799 LAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMD----DKDVHAELKRNDLETLCEHIFG 874 (1304)
Q Consensus 799 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~----~~d~~~~itr~efe~l~~~~~~ 874 (1304)
|++|+.++|.++++.++..+++++.+|+.+||++|+.||.+.. ..+.++++.. +.++...|||++||++|+++++
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~-~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~ 309 (621)
T CHL00094 231 IVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQ-TEINLPFITATQTGPKHIEKTLTRAKFEELCSDLIN 309 (621)
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc-eEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998763 5778877653 2578899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEE
Q psy7140 875 RIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVT 954 (1304)
Q Consensus 875 ~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~ 954 (1304)
++..+|+++|+++++++.+|+.|+||||+||+|.|++.|+++||.++..++||++|||+|||++|+.+++ +++++.+.
T Consensus 310 ~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~--~~~~~~~~ 387 (621)
T CHL00094 310 RCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAG--EVKDILLL 387 (621)
T ss_pred HHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcC--Cccceeee
Confidence 9999999999999999999999999999999999999999999998999999999999999999999988 46789999
Q ss_pred eeecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEec----ceeEEEEEEecC-CCCCCccceeEEeecCCCCCCC
Q psy7140 955 DVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRA----NVFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKG 1029 (1304)
Q Consensus 955 d~~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~ 1029 (1304)
|++||+||+++. .+...+|||+|+++|++++.+|.+. ..+.+.+|+|+. .+.+|..||+|.|+++++.+.|
T Consensus 388 d~~~~~lgi~~~----~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g 463 (621)
T CHL00094 388 DVTPLSLGVETL----GGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRG 463 (621)
T ss_pred eeeceeeeeecc----CCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCC
Confidence 999999999864 2346689999999999999999763 357888898877 7778999999999999999888
Q ss_pred CCceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHH
Q psy7140 1030 KPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNA 1109 (1304)
Q Consensus 1030 ~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~ 1109 (1304)
.+ +|+|+|++|.||+|+|++.+.. +.+...+++.. ..+|+.++++++++++.+|..+|+..+++.++||+
T Consensus 464 ~~-~i~v~f~id~~Gil~v~~~~~~-------t~~~~~~~i~~--~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~ 533 (621)
T CHL00094 464 VP-QIEVTFDIDANGILSVTAKDKG-------TGKEQSITIQG--ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQ 533 (621)
T ss_pred CC-cEEEEEEECCCCeEEEEEeecc-------CCceeeeeecc--chhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 76 5999999999999999986332 23444555543 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHh
Q psy7140 1110 LEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAME 1180 (1304)
Q Consensus 1110 LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e 1180 (1304)
||+|||.+|++|++ +..++++++|+++.+.+++.++|||++ ..+++++++++|++.++++..+++.
T Consensus 534 le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 534 AESLCYQAEKQLKE-LKDKISEEKKEKIENLIKKLRQALQND----NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred hHHHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999974 788999999999999999999999975 3469999999999999999876655
No 13
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=3.4e-88 Score=842.71 Aligned_cols=582 Identities=27% Similarity=0.468 Sum_probs=528.6
Q ss_pred EEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCC-ceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhHH
Q psy7140 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-NRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQ 640 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~~ 640 (1304)
|||||||||||+||++.+|.+++++|..|.|.+||+|+|.++ ++++|..|..+..++|.++++++||+||+.+. .++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~~ 79 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EVT 79 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HHH
Confidence 799999999999999999999999999999999999999855 89999999999999999999999999999883 467
Q ss_pred HhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHH
Q psy7140 641 EELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAAS 720 (1304)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~ 720 (1304)
...+.+||. +..+++.+.+.+. +..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~-v~~~~~~~~~~v~----~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~ 154 (595)
T TIGR02350 80 EEAKRVPYK-VVGDGGDVRVKVD----GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGK 154 (595)
T ss_pred HHhhcCCee-EEcCCCceEEEEC----CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 778889999 6667787777764 57899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHH
Q psy7140 721 IAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800 (1304)
Q Consensus 721 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~ 800 (1304)
+||+++++|++||+|||++|++.+. ..+.++|||||||||||+|++++.++.++++++.|+..+||++||+.|+
T Consensus 155 ~AGl~v~~li~EptAAAl~y~~~~~------~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~ 228 (595)
T TIGR02350 155 IAGLEVLRIINEPTAAALAYGLDKS------KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRII 228 (595)
T ss_pred HcCCceEEEecchHHHHHHHhhccc------CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHH
Confidence 9999999999999999999987542 3468899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCC----cceEEEecHHHHHHHHHHHHHHH
Q psy7140 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDD----KDVHAELKRNDLETLCEHIFGRI 876 (1304)
Q Consensus 801 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i 876 (1304)
+|+.++|.++++.++..+++++.||+.+||++|+.||.+.. ..+.++.+..+ .++.++|||++|+++|+++++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~-~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~ 307 (595)
T TIGR02350 229 DWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLS-TEINLPFITADASGPKHLEMTLTRAKFEELTADLVERT 307 (595)
T ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCc-eEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 57788776543 57899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEee
Q psy7140 877 EICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDV 956 (1304)
Q Consensus 877 ~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d~ 956 (1304)
..+++++|+++++++.+|+.|+||||+||+|+|++.|+++||.++..++|||+|||+|||++|+.+++. ++++.+.|+
T Consensus 308 ~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~~~~~~~d~ 385 (595)
T TIGR02350 308 KEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--VKDVLLLDV 385 (595)
T ss_pred HHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--cccceeeec
Confidence 999999999999999999999999999999999999999999889999999999999999999999986 678999999
Q ss_pred ecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEecc----eeEEEEEEecC-CCCCCccceeEEeecCCCCCCCCC
Q psy7140 957 QNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRAN----VFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKGKP 1031 (1304)
Q Consensus 957 ~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~~----~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~~~ 1031 (1304)
+||+||+++.+ +...+||++|+++|++++.+|.+.. .+.+.+|+++. .+.+|..||+|.|+++++.+.+.+
T Consensus 386 ~~~~igi~~~~----~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~ 461 (595)
T TIGR02350 386 TPLSLGIETLG----GVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVP 461 (595)
T ss_pred ccceeEEEecC----CceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCc
Confidence 99999999752 3456899999999999999997643 46788888877 677889999999999999988876
Q ss_pred ceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q psy7140 1032 QKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALE 1111 (1304)
Q Consensus 1032 ~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 1111 (1304)
+|+++|++|.||+|+|++.+.. +++...+.+... .+||.++++++.+++.+|..+|+.++++.++||+||
T Consensus 462 -~i~v~f~~d~~G~l~v~~~~~~-------~~~~~~~~i~~~--~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lE 531 (595)
T TIGR02350 462 -QIEVTFDIDANGILHVSAKDKG-------TGKEQSITITAS--SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNAD 531 (595)
T ss_pred -eEEEEEEEcCCCeEEEEEEEcc-------CCceEEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 6999999999999999986432 234444555443 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHH
Q psy7140 1112 EYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRA 1178 (1304)
Q Consensus 1112 s~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~ 1178 (1304)
+|||++|++|++ +.+++++++|+++.+.+++.++|||++ +..++++++++|++.++++..++
T Consensus 532 s~iy~~r~~l~~-~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 532 SLAYQAEKTLKE-AGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAKTEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999973 578899999999999999999999864 56799999999999999987654
No 14
>KOG0101|consensus
Probab=100.00 E-value=6.9e-90 Score=800.30 Aligned_cols=603 Identities=31% Similarity=0.510 Sum_probs=561.3
Q ss_pred ccceEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCCh
Q psy7140 558 IIMSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDP 637 (1304)
Q Consensus 558 ~~~~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~ 637 (1304)
..+.++|||||||+++|+++.++.++++.|+.|+|.|||+|+|.++++++|.+|..+...||.|+++.+||++|+.++++
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~ 84 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDP 84 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccch
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHH
Q psy7140 638 FVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLT 717 (1304)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~ 717 (1304)
.++...++|||.+....++.+.+.+.+.++...|+|+++..++|.++++.|+.++|..+.++|+|||+||++.||+++.+
T Consensus 85 ~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~ 164 (620)
T KOG0101|consen 85 EVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKD 164 (620)
T ss_pred hhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHH
Confidence 99999999999999777778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHH
Q psy7140 718 AASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDK 797 (1304)
Q Consensus 718 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~ 797 (1304)
|+.+|||+++++|+||+|||++|++.+. .....+|+|+|+||||||+|++.+.+|.+.++++.+|.++||.+||+
T Consensus 165 A~~iaGl~vlrii~EPtAaalAygl~k~-----~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~ 239 (620)
T KOG0101|consen 165 AALIAGLNVLRIINEPTAAALAYGLDKK-----VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDN 239 (620)
T ss_pred HHHhcCCceeeeecchHHHHHHhhcccc-----ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhH
Confidence 9999999999999999999999997664 25678899999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHH
Q psy7140 798 ILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIE 877 (1304)
Q Consensus 798 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~ 877 (1304)
.|.+|+..+|+++++.++..++++++||+.+||++|+.||.. ..+.+.+++|+++.|+..+|||.+||++|.+++.++.
T Consensus 240 ~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~-~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~ 318 (620)
T KOG0101|consen 240 KLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSS-TQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTL 318 (620)
T ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccc-ccceeccchhhccccccceeehhhhhhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999764 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHc-CCCCCCCCCchhHHHhHHHHHhhHhcCC--cccceeEEE
Q psy7140 878 ICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF-HKPPSTTLNQDEAVSRGCALQCAILSPA--VKIRHFDVT 954 (1304)
Q Consensus 878 ~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~f-g~~~~~~~n~~eava~Gaa~~aa~ls~~--~~~~~~~~~ 954 (1304)
.++.++|+++++++.+|+.|+||||++|+|.+|..++++| ++.+..++||||+||+|||+|||.+++. ..+.++.+.
T Consensus 319 ~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 319 EPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 9999999999999999999999999999999999999999 5778899999999999999999999875 235899999
Q ss_pred eeecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEecc----eeEEEEEEecC-CCCCCccceeEEeecCCCCCCC
Q psy7140 955 DVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRAN----VFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKG 1029 (1304)
Q Consensus 955 d~~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~~----~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~ 1029 (1304)
|+.|.++||+... +...++|++++.+|++++.+|.+.. .+.|.+|+++. +..+|..+|.|.|+|++|+|+|
T Consensus 399 d~~pl~~gve~a~----~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprg 474 (620)
T KOG0101|consen 399 DVAPLSLGVETAG----GVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRG 474 (620)
T ss_pred ecccccccccccC----CcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccC
Confidence 9999999998531 2355899999999999999886543 47899999987 7889999999999999999999
Q ss_pred CCceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHH
Q psy7140 1030 KPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNA 1109 (1304)
Q Consensus 1030 ~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~ 1109 (1304)
.|. |+++|.+|.||+|.|++.++ .++|...+.|.+. ...||.++|++|..+.+++..+|...+.+..++|.
T Consensus 475 vp~-IevtfdiD~ngiL~Vta~d~-------stgK~~~i~i~n~-~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~ 545 (620)
T KOG0101|consen 475 VPQ-IEVTFDIDANGILNVTAVDK-------STGKENKITITND-KGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNS 545 (620)
T ss_pred Ccc-eeEEEecCCCcEEEEeeccc-------cCCccceEEEecc-cceeehhhhhhhhhhhhhccccCHHHHHHHHHHhh
Confidence 985 99999999999999998633 3566667776654 57899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhh
Q psy7140 1110 LEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEY 1181 (1304)
Q Consensus 1110 LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 1181 (1304)
||+|+|+++..+++.- +.++++++.++.++|+++..||+.+ ..+.+++|++|.++|+..++||..+++..
T Consensus 546 le~~~f~~~~~~~~~~-~~i~~~~~~~~~~~~~~~i~wl~~~-~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 546 LESYAFNMKATVEDEK-GKINEEDKQKILDKCNEVINWLDKN-QLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHhhhhhhhhhc-cccChhhhhhHHHHHHHHHHHhhhc-ccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 9999999999998433 8899999999999999999999877 56679999999999999999999998876
No 15
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.5e-85 Score=810.97 Aligned_cols=577 Identities=23% Similarity=0.384 Sum_probs=518.4
Q ss_pred EEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCC-ceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhHH
Q psy7140 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-NRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQ 640 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~~ 640 (1304)
+||||||||||+||++.+|.++++.|..|.|.+||+|+|.++ ++++|..|..+..++|.++++++||+||+.+.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 589999999999999999999999999999999999999755 89999999999999999999999999999987743
Q ss_pred HhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHH
Q psy7140 641 EELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAAS 720 (1304)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~ 720 (1304)
. .+.+||.++..++|.+.+.+.. ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 5678999988888888777642 3789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHH
Q psy7140 721 IAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800 (1304)
Q Consensus 721 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~ 800 (1304)
+|||++++|++||+|||++|++.+ ..+.++||||+||||||+|++++.++.++|+++.|+.++||++||+.|+
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~-------~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~ 226 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDK-------ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALA 226 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhcc-------CCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHH
Confidence 999999999999999999998754 2467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHHH
Q psy7140 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICL 880 (1304)
Q Consensus 801 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i 880 (1304)
+|+.+++ +.+...+++++.+|+.+||++|+.||.+. .+.+.++. ++.++.++|||++|+++|+++++++..++
T Consensus 227 ~~l~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~-~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i 299 (599)
T TIGR01991 227 KWILKQL----GISADLNPEDQRLLLQAARAAKEALTDAE-SVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSIC 299 (599)
T ss_pred HHHHHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCc-eEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 9998654 55666789999999999999999999865 35666654 78999999999999999999999999999
Q ss_pred HHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEeeecce
Q psy7140 881 NKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYP 960 (1304)
Q Consensus 881 ~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d~~~~~ 960 (1304)
+++|+++++++.+|+.|+||||+||+|+|++.|+++||.++..++|||+|||+|||++|+.+++.++.+++.+.|++||+
T Consensus 300 ~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~s 379 (599)
T TIGR01991 300 RRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLS 379 (599)
T ss_pred HHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeee
Confidence 99999999999999999999999999999999999999888889999999999999999999998888899999999999
Q ss_pred eEEEEccCCCCCceeeeecCCCCCCceEEEEEEe--cc--eeEEEEEEecC-CCCCCccceeEEeecCCCCCCCCCceEE
Q psy7140 961 IKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYR--AN--VFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKGKPQKVK 1035 (1304)
Q Consensus 961 i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~--~~--~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~~~~~i~ 1035 (1304)
||+++. .+...+||++|+++|++++..|++ ++ .+.|.+|+|+. .+.+|..||+|.|+++++.+.|.+ +|+
T Consensus 380 lgi~~~----~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~-~i~ 454 (599)
T TIGR01991 380 LGIETM----GGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAA-RIR 454 (599)
T ss_pred eEEEec----CCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCC-cEE
Confidence 999975 234568999999999999888864 33 46788888877 778899999999999999998876 599
Q ss_pred EEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q psy7140 1036 VKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALEEYVY 1115 (1304)
Q Consensus 1036 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy 1115 (1304)
|+|++|.||+|+|++.+.. +++...+.+.. ..+|++++++++.+++.++..+|+..+++.+++|++|+|+|
T Consensus 455 v~f~id~~gil~V~a~~~~-------t~~~~~~~i~~--~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 525 (599)
T TIGR01991 455 VTFQVDADGLLTVSAQEQS-------TGVEQSIQVKP--SYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILE 525 (599)
T ss_pred EEEEECCCCeEEEEEEECC-------CCcEEEEeccc--ccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985322 23444455543 35799999999999999999999999999999999999999
Q ss_pred HHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHH
Q psy7140 1116 ELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRA 1178 (1304)
Q Consensus 1116 ~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~ 1178 (1304)
.++..+. ++...+++++|+++.+.+++.++||+++ +...++++.++|+..++++..+.
T Consensus 526 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~ 583 (599)
T TIGR01991 526 ALQAALA-ADGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALEEATDNFAARR 583 (599)
T ss_pred HHHHHHH-HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998885 3456899999999999999999999864 45789999999999998887533
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=7.5e-85 Score=824.52 Aligned_cols=595 Identities=38% Similarity=0.661 Sum_probs=535.8
Q ss_pred EEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhHHH
Q psy7140 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQE 641 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~~~ 641 (1304)
||||||||+||+||++.+|.++++.|..|+|++||+|+|.++++++|..|.....++|+++++++|+|||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHHH
Q psy7140 642 ELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASI 721 (1304)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~ 721 (1304)
..+.+||.++..++|...+.+.+.++...++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999999989999999998887789999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHH
Q psy7140 722 AGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAE 801 (1304)
Q Consensus 722 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~ 801 (1304)
|||++++||+||+|||++|++.+. ..++++|||||||||+|+|++++.++.++++++.++..+||++||..|++
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~------~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~ 234 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERS------DKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAE 234 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSS------SSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred cccccceeeccccccccccccccc------ccccceeccccccceEeeeehhcccccccccccccccccccceecceeec
Confidence 999999999999999999987654 25789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccC-CceeeeEEeeecC-CcceEEEecHHHHHHHHHHHHHHHHHH
Q psy7140 802 YISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSAN-SNKLPLNIECFMD-DKDVHAELKRNDLETLCEHIFGRIEIC 879 (1304)
Q Consensus 802 ~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~-~~~~~~~ie~l~~-~~d~~~~itr~efe~l~~~~~~~i~~~ 879 (1304)
|+.++|..+++.+...+++++.+|+.+||++|+.||.. ...+.+.++++.+ |.++.+.|||++|+++++++++++..+
T Consensus 235 ~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~ 314 (602)
T PF00012_consen 235 YLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEP 314 (602)
T ss_dssp HHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccc
Confidence 99999999999999999999999999999999999983 4457888998888 899999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEeeecc
Q psy7140 880 LNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNY 959 (1304)
Q Consensus 880 i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d~~~~ 959 (1304)
|+++|++++++..+|+.|+|+||+||+|+||+.|++.||..+..++||++|||+|||++|+.+++.++++++.+.|++|+
T Consensus 315 i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~ 394 (602)
T PF00012_consen 315 IEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPF 394 (602)
T ss_dssp HHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESS
T ss_pred cccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCCCceeeeecCCCCCCceEEEEEEec----ceeEEEEEEecC-CCCCCccceeEEeecCCCCCCCCCceE
Q psy7140 960 PIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRA----NVFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKGKPQKV 1034 (1304)
Q Consensus 960 ~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~~~~~i 1034 (1304)
+|||.+.+ +...+++++|+++|.+++..|... ..+.+.+|+++. ...++..||++.|+++++.+.+.+ +|
T Consensus 395 ~~~i~~~~----~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~-~i 469 (602)
T PF00012_consen 395 SIGIEVSN----GKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKP-KI 469 (602)
T ss_dssp EEEEEETT----TEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSS-EE
T ss_pred cccccccc----cccccccccccccccccccccchhccccccccceeeecccccccccccccccccccccccccccc-ce
Confidence 99999753 346689999999999988777543 368999999987 556779999999999998888866 69
Q ss_pred EEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHH
Q psy7140 1035 KVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALEEYV 1114 (1304)
Q Consensus 1035 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~i 1114 (1304)
+++|++|.||+|+|+.+++... ....+.+... ..+++++++++.++++++...|+.++++.+++|+||+++
T Consensus 470 ~v~f~ld~~Gil~V~~~~~~~~-------~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i 540 (602)
T PF00012_consen 470 KVTFELDENGILSVEAAEVETG-------KEEEVTVKKK--ETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYI 540 (602)
T ss_dssp EEEEEEETTSEEEEEEEETTTT-------EEEEEEEESS--SSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEeeeeeeehhhhhcccccc-------cccccccccc--cccccccccccccccchhhhhhhhhhhccccHHHHHHHH
Confidence 9999999999999999866432 2233334333 348999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHh
Q psy7140 1115 YELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAME 1180 (1304)
Q Consensus 1115 y~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e 1180 (1304)
|++|+.|++. .++++++++ .+++++..+||+++.++++.++|++|+++|+++.+||..|+++
T Consensus 541 ~~~r~~l~~~-~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 541 YELRDKLEED-KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHTCC-GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhh-hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999865 677777776 8889999999999988889999999999999999999999864
No 17
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2e-84 Score=802.06 Aligned_cols=576 Identities=22% Similarity=0.392 Sum_probs=514.0
Q ss_pred eEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhHH
Q psy7140 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQ 640 (1304)
Q Consensus 561 ~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~~ 640 (1304)
.+||||||||||+||++.+|.+++++|..|.|.+||+|+|.+++++||..|..+...+|.++++++||+||+.+.+ ++
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQ 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hh
Confidence 5899999999999999999999999999999999999999988899999999999999999999999999999876 34
Q ss_pred HhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHH
Q psy7140 641 EELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAAS 720 (1304)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~ 720 (1304)
.....+||.+...++|.+.+.+. ...++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~----~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTA----QGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEec----CCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 45567899988877888777653 23789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHH
Q psy7140 721 IAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800 (1304)
Q Consensus 721 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~ 800 (1304)
+|||++++|++||+|||++|++.+ ..++++||||+||||||+|++++.++.++|+++.|+.++||++||..|+
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~-------~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~ 246 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDS-------GQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLA 246 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhccc-------CCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHH
Confidence 999999999999999999998754 2367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHHH
Q psy7140 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICL 880 (1304)
Q Consensus 801 ~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i 880 (1304)
+|+.++| +.+...+++++.+|+.+||++|+.||.+.. +.+.+.. +...|||++|+++|+++++++..++
T Consensus 247 ~~~~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~-~~i~i~~------~~~~itr~efe~l~~~l~~~~~~~i 315 (616)
T PRK05183 247 DWILEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADS-VEVSVAL------WQGEITREQFNALIAPLVKRTLLAC 315 (616)
T ss_pred HHHHHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCce-EEEEEec------CCCeEcHHHHHHHHHHHHHHHHHHH
Confidence 9998876 444557899999999999999999998653 5566532 2335999999999999999999999
Q ss_pred HHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEeeecce
Q psy7140 881 NKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYP 960 (1304)
Q Consensus 881 ~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d~~~~~ 960 (1304)
+++|+++++.+.+|+.|+||||+||+|+|++.|+++||.++..++|||+|||+|||++|+.+++.++.+++.+.|++|++
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~s 395 (616)
T PRK05183 316 RRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLS 395 (616)
T ss_pred HHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeecccc
Confidence 99999999999999999999999999999999999999888889999999999999999999998888899999999999
Q ss_pred eEEEEccCCCCCceeeeecCCCCCCceEEEEEEe--cc--eeEEEEEEecC-CCCCCccceeEEeecCCCCCCCCCceEE
Q psy7140 961 IKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYR--AN--VFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKGKPQKVK 1035 (1304)
Q Consensus 961 i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~--~~--~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~~~~~i~ 1035 (1304)
||+++. .+...+||++|+++|++++..|++ ++ .+.+.+|+|+. .+.+|..||+|.|+|+|+.+.|.+ +|+
T Consensus 396 lgi~~~----~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~-~i~ 470 (616)
T PRK05183 396 LGLETM----GGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAA-RIR 470 (616)
T ss_pred ccceec----CCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCc-cEE
Confidence 999864 234558999999999999888865 33 46778888877 778899999999999999998876 599
Q ss_pred EEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHH
Q psy7140 1036 VKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALEEYVY 1115 (1304)
Q Consensus 1036 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy 1115 (1304)
|+|++|.||+|+|++.+.. +++...+.+... .+|+++++++++++++++..+|+..+++.+++|++|+|+|
T Consensus 471 v~f~~d~~Gil~V~a~~~~-------~~~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~ 541 (616)
T PRK05183 471 VTFQVDADGLLSVTAMEKS-------TGVEASIQVKPS--YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLE 541 (616)
T ss_pred EEEEECCCCeEEEEEEEcC-------CCcEEEeccccc--ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999975322 344455555433 5799999999999999999999999999999999999999
Q ss_pred HHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHH
Q psy7140 1116 ELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAM 1179 (1304)
Q Consensus 1116 ~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~ 1179 (1304)
.++..+.+ ....+++++|+++.+.+++.++||..+ +.+.+++++++|++.++++..+.+
T Consensus 542 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l~~~~~~~~~~~~ 600 (616)
T PRK05183 542 ALQAALAA-DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKALDKATQEFAARRM 600 (616)
T ss_pred HHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999963 346789999999999999999999743 577999999999999999986443
No 18
>KOG0102|consensus
Probab=100.00 E-value=2.3e-83 Score=709.37 Aligned_cols=591 Identities=28% Similarity=0.468 Sum_probs=535.7
Q ss_pred cceEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEe-CCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCCh
Q psy7140 559 IMSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFS-DKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDP 637 (1304)
Q Consensus 559 ~~~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~ 637 (1304)
.-+|+|||+||+||+++++.++.+.++.|..|.|.+||+|+|. +.++++|..|+.++..||.|+++.-||+||++++++
T Consensus 26 ~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ 105 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDP 105 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCH
Confidence 3479999999999999999999999999999999999999995 559999999999999999999999999999999999
Q ss_pred hHHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHH
Q psy7140 638 FVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLT 717 (1304)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~ 717 (1304)
.++.+.+..||+++...+|...++. .+..++|.++.+++|.+++++|+++++..+...|+|||+||++.||+++++
T Consensus 106 evq~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkd 181 (640)
T KOG0102|consen 106 EVQKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKD 181 (640)
T ss_pred HHHHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHh
Confidence 9999999999999999999888777 478999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHH
Q psy7140 718 AASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDK 797 (1304)
Q Consensus 718 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~ 797 (1304)
|.++||+++++++|||+|||++|++.++ ....++|||+||||||+||..+.+|.++|.++.+|.++||++||.
T Consensus 182 ag~iagl~vlrvineptaaalaygld~k-------~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~ 254 (640)
T KOG0102|consen 182 AGQIAGLNVLRVINEPTAAALAYGLDKK-------EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDN 254 (640)
T ss_pred hhhhccceeeccCCccchhHHhhccccc-------CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHH
Confidence 9999999999999999999999999764 267899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCC----cceEEEecHHHHHHHHHHHH
Q psy7140 798 ILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDD----KDVHAELKRNDLETLCEHIF 873 (1304)
Q Consensus 798 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~----~d~~~~itr~efe~l~~~~~ 873 (1304)
.+.+|+..+|+...++++..+.+++.||..++|++|+.||.... ..++++....+ ..+++++||.+||+++.+++
T Consensus 255 ~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~-tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI 333 (640)
T KOG0102|consen 255 ALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQ-TEINLPFITADASGPKHLNIELTRGEFEELVPSLI 333 (640)
T ss_pred HHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhccc-ceeccceeeccCCCCeeEEEeecHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999998543 45666655544 67899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEE
Q psy7140 874 GRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDV 953 (1304)
Q Consensus 874 ~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~ 953 (1304)
+|.+.+++++|++|+++.+||+.|+|+||.+|+|.+++.+++.||..+...+||||+||.|||++++.+++. ++++.+
T Consensus 334 ~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~ge--VkdvlL 411 (640)
T KOG0102|consen 334 ARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGE--VKDVLL 411 (640)
T ss_pred HhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcc--ccceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 899999
Q ss_pred EeeecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEec----ceeEEEEEEecC-CCCCCccceeEEeecCCCCCC
Q psy7140 954 TDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRA----NVFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPK 1028 (1304)
Q Consensus 954 ~d~~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~----~~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~ 1028 (1304)
.|++|.++||+.-. +-...|+++++.+|++++..|.+. ..+++.+++++. +..+|..+|+|.+.|+||.|+
T Consensus 412 LdVtpLsLgietlg----gvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pR 487 (640)
T KOG0102|consen 412 LDVTPLSLGIETLG----GVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPR 487 (640)
T ss_pred eecchHHHHHHhhh----hhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCC
Confidence 99999999998431 234579999999999999988663 357888888887 788999999999999999999
Q ss_pred CCCceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHH
Q psy7140 1029 GKPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKN 1108 (1304)
Q Consensus 1029 ~~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN 1108 (1304)
|.|+ |.|+|.+|.||+.+|++.+. .+.|...+.+... .+||++++++|+++.+++...|+.++++.+.+|
T Consensus 488 gvpq-ieVtfDIdanGI~~vsA~dk-------~t~K~qsi~i~~s--ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~n 557 (640)
T KOG0102|consen 488 GVPQ-IEVTFDIDANGIGTVSAKDK-------GTGKSQSITIASS--GGLSKDEIELMVGEAERLASTDKEKREAIETKN 557 (640)
T ss_pred CCCc-eeEEEeecCCceeeeehhhc-------ccCCccceEEeec--CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhc
Confidence 9996 99999999999999998622 3556666666654 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHH
Q psy7140 1109 ALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAM 1179 (1304)
Q Consensus 1109 ~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~ 1179 (1304)
..|+++|.....+. .+.+.++.++..+|...+....+.+..- ...+.++++.+...|+....|+..-++
T Consensus 558 ka~s~~~~te~~~~-~~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~~k~~~~~l~q~~lkl~es~~ 626 (640)
T KOG0102|consen 558 KADSIIYDTEKSLK-EFEEKIPAEECEKLEEKISDLRELVANK-DSGDMEEIKKAMSALQQASLKLFESAY 626 (640)
T ss_pred chhheecCchhhhh-hhhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhhHHHHHHHHHHhhhHHHHHHH
Confidence 99999999998886 5677788888889999999888888532 223346777777777777777655443
No 19
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.1e-79 Score=751.61 Aligned_cols=544 Identities=21% Similarity=0.347 Sum_probs=465.2
Q ss_pred eEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCCh---
Q psy7140 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDP--- 637 (1304)
Q Consensus 561 ~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~--- 637 (1304)
.+||||||||||+||++.+|+++++.|..|+|.+||+|+|.++++++|..| +++++||++|+.+++.
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 589999999999999999999999999999999999999998889999987 7899999999998762
Q ss_pred -hHHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHH
Q psy7140 638 -FVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALL 716 (1304)
Q Consensus 638 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~ 716 (1304)
.+....+. .....++...+.+ .+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 90 ~~~~~~~k~----~~~~~~~~~~~~~----~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 90 PALFSLVKD----YLDVNSSELKLNF----ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred hhhHhhhhh----eeecCCCeeEEEE----CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 22111111 1112222223332 24689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHH
Q psy7140 717 TAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNID 796 (1304)
Q Consensus 717 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D 796 (1304)
+||++||+++++|++||+|||++|++.+. ...++||||+||||||+|++++.++.++|++++|+.++||++||
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~-------~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D 234 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKN-------QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDID 234 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccC-------CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHH
Confidence 99999999999999999999999987542 34689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHH
Q psy7140 797 KILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRI 876 (1304)
Q Consensus 797 ~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i 876 (1304)
.+|++|+..+|. ...+.+ .++.||++|+.||.+.. . .. ..++|||++||++|+++++++
T Consensus 235 ~~l~~~~~~~~~------~~~~~~----~~~~~ekaK~~LS~~~~-~--~~--------~~~~itr~efe~l~~~l~~~~ 293 (595)
T PRK01433 235 VVITQYLCNKFD------LPNSID----TLQLAKKAKETLTYKDS-F--NN--------DNISINKQTLEQLILPLVERT 293 (595)
T ss_pred HHHHHHHHHhcC------CCCCHH----HHHHHHHHHHhcCCCcc-c--cc--------ceEEEcHHHHHHHHHHHHHHH
Confidence 999999998873 222222 33469999999998642 1 11 177999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEee
Q psy7140 877 EICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDV 956 (1304)
Q Consensus 877 ~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d~ 956 (1304)
..+++++|++++ ..+|+.|+||||+||+|+|++.|+++||.++..++|||+|||+|||++|+.+++.+ +++.+.|+
T Consensus 294 ~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~--~~~~l~Dv 369 (595)
T PRK01433 294 INIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH--TNSLLIDV 369 (595)
T ss_pred HHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc--cceEEEEe
Confidence 999999999998 57899999999999999999999999999888999999999999999999998753 57899999
Q ss_pred ecceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEe--cc--eeEEEEEEecC-CCCCCccceeEEeecCCCCCCCCC
Q psy7140 957 QNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYR--AN--VFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKGKP 1031 (1304)
Q Consensus 957 ~~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~--~~--~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~~~ 1031 (1304)
+|++|||++.+ +...+||++|+++|++++..|.+ ++ .+.|.+|+|+. ...+|..||+|.|+|+|+.+.|.+
T Consensus 370 ~p~slgi~~~~----g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~ 445 (595)
T PRK01433 370 VPLSLGMELYG----GIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSI 445 (595)
T ss_pred cccceEEEecC----CEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCc
Confidence 99999999852 34568999999999998888854 23 47788999887 778899999999999999998876
Q ss_pred ceEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHHHH
Q psy7140 1032 QKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALE 1111 (1304)
Q Consensus 1032 ~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 1111 (1304)
+|+|+|++|.||+|+|++.+.. +++...+.|... ..||++++++++++.+++..+|...+++.+++|++|
T Consensus 446 -~i~vtf~id~~Gil~V~a~~~~-------t~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 515 (595)
T PRK01433 446 -RAEVTFAIDADGILSVSAYEKI-------SNTSHAIEVKPN--HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAE 515 (595)
T ss_pred -cEEEEEEECCCCcEEEEEEEcC-------CCcEEEEEecCC--CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 5999999999999999986432 345555666543 569999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccch
Q psy7140 1112 EYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDP 1173 (1304)
Q Consensus 1112 s~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~ 1173 (1304)
+++|.++..+++ +...+++++|+.+.+.+++.++||..+ +...+++++++|+....+
T Consensus 516 ~~~~~~~~~~~~-~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 516 ALIFNIERAIAE-LTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSIKEFKSKIKK 572 (595)
T ss_pred HHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Confidence 999999999964 566789999999999999999999743 445666666666666666
No 20
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-78 Score=735.65 Aligned_cols=567 Identities=29% Similarity=0.466 Sum_probs=514.2
Q ss_pred ceEEEEEccCccEEEEEEECC-ceEEEeCCCCCcccceEEEEeCC-ceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCCh
Q psy7140 560 MSVIGIDFGTESCYLSVAKSG-GIETIVNDYSLRSTPSCVAFSDK-NRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDP 637 (1304)
Q Consensus 560 ~~vvGID~Gtt~s~va~~~~g-~~~ii~n~~~~r~~Ps~V~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~ 637 (1304)
+.+||||||||||+||++.++ .+.++.|..|.|.+||+|+|..+ ++++|..|..++..+|.++++.+||++|+....
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~- 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG- 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC-
Confidence 468999999999999999988 79999999999999999999866 599999999999999999999999999987110
Q ss_pred hHHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHH
Q psy7140 638 FVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLT 717 (1304)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~ 717 (1304)
..+.+.. .++.++|+++++++|.+|++.|+.+++..+.++|||||+||++.||+++++
T Consensus 84 --------------------~~~~~~~--~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~ 141 (579)
T COG0443 84 --------------------LKISVEV--DGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKD 141 (579)
T ss_pred --------------------Ccceeee--CCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHH
Confidence 0011111 137899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHH
Q psy7140 718 AASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDK 797 (1304)
Q Consensus 718 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~ 797 (1304)
|+++|||+++++++||+|||++|++.+. ++.+|||||+||||||+|++++..+.++|+++.||.++||++||.
T Consensus 142 A~~iaGl~vlrlinEPtAAAlayg~~~~-------~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~ 214 (579)
T COG0443 142 AARIAGLNVLRLINEPTAAALAYGLDKG-------KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDN 214 (579)
T ss_pred HHHHcCCCeEEEecchHHHHHHhHhccC-------CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHH
Confidence 9999999999999999999999998653 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHH
Q psy7140 798 ILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIE 877 (1304)
Q Consensus 798 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~ 877 (1304)
+|.+|+..+|..+++.+.+.+++++.||+.+||++|+.||+... +.++++.+..+.++..+|||++||+++.+++.++.
T Consensus 215 ~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~-~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~ 293 (579)
T COG0443 215 ALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQ-TSINLPSIGGDIDLLKELTRAKFEELILDLLERTI 293 (579)
T ss_pred HHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccc-cccchhhccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999764 67888877777889999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCcccceeEEEeee
Q psy7140 878 ICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQ 957 (1304)
Q Consensus 878 ~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~~~~~~~~~d~~ 957 (1304)
.++.++|.+++++..+|+.|+||||++|||.|++.++++||.++..++||||+||.|||++|+.+++..+ ++.+.|++
T Consensus 294 ~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~--d~ll~Dv~ 371 (579)
T COG0443 294 EPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP--DVLLLDVI 371 (579)
T ss_pred HHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc--CceEEeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999755 89999999
Q ss_pred cceeEEEEccCCCCCceeeeecCCCCCCceEEEEEEec--c--eeEEEEEEecC-CCCCCccceeEEeecCCCCCCCCCc
Q psy7140 958 NYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRA--N--VFDVQAYYDCP-VPYPTQFVGQFIIKDIKPGPKGKPQ 1032 (1304)
Q Consensus 958 ~~~i~i~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~--~--~~~i~~~~~~~-~~~~~~~i~~~~i~~i~~~~~~~~~ 1032 (1304)
|+++|+++.+ +-...++++++.+|.++...|.+. + ...+.+++++. ...+|..+|.|.+.+++|.+.|.++
T Consensus 372 plslgie~~~----~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~ 447 (579)
T COG0443 372 PLSLGIETLG----GVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQ 447 (579)
T ss_pred eeccccccCc----chhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCc
Confidence 9999998653 234579999999999998888553 2 36677777776 6788999999999999999999985
Q ss_pred eEEEEEEEccceEEEEEeeeeeecccccccceeeeeccccccCccCChHHHHHHHHHHhhhccCchhHHHHHHHHHHHHH
Q psy7140 1033 KVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALEE 1112 (1304)
Q Consensus 1033 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 1112 (1304)
|+++|.+|.||+++|++.++ ..++...+.|... .+|++++++.|.+.++.+.+.|+..++..+++|.+++
T Consensus 448 -i~v~f~iD~~gi~~v~a~~~-------~~~k~~~i~i~~~--~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~ 517 (579)
T COG0443 448 -IEVTFDIDANGILNVTAKDL-------GTGKEQSITIKAS--SGLSDEEIERMVEDAEANAALDKKFRELVEARNEAES 517 (579)
T ss_pred -eEEEeccCCCcceEeeeecc-------cCCceEEEEEecC--CCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHH
Confidence 99999999999999998544 2466777777776 3499999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHh
Q psy7140 1113 YVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAME 1180 (1304)
Q Consensus 1113 ~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e 1180 (1304)
++|.++..|.+.. .+++++++++...+.++++||++ + .++++.+.++|+...+++..++++
T Consensus 518 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~--~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 518 LIYSLEKALKEIV--KVSEEEKEKIEEAITDLEEALEG--E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHhhhc--cCCHHHHHHHHHHHHHHHHHHhc--c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999997433 88999999999999999999986 2 889999999999999998877654
No 21
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=3.9e-79 Score=751.88 Aligned_cols=458 Identities=27% Similarity=0.482 Sum_probs=408.1
Q ss_pred cEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCCceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhHH
Q psy7140 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQ 81 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~ 81 (1304)
.+||||||||||+||++.+|++++++|..|.|.+||+|+|.+++++||..|+.+...+|.++++++||+||+.+.++.++
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~ 107 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHHh
Q psy7140 82 EELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISEN 161 (1304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~~ 161 (1304)
..++.+||.++..++ +.+.+. ...++.++|+++++++|++|++.|+.
T Consensus 108 ~~~~~~p~~vv~~~~------------------------------~~~~i~---~~~~~~~speeisa~iL~~Lk~~Ae~ 154 (657)
T PTZ00186 108 KDIKNVPYKIVRAGN------------------------------GDAWVQ---DGNGKQYSPSQIGAFVLEKMKETAEN 154 (657)
T ss_pred HhhccCcEEEEEcCC------------------------------CceEEE---eCCCeEEcHHHHHHHHHHHHHHHHHH
Confidence 999999998765433 223222 13457899999999999999999999
Q ss_pred hhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEE
Q psy7140 162 EIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241 (1304)
Q Consensus 162 ~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvs 241 (1304)
++|.++.++|||||+||++.||+++++||++|||++++||+||+|||++|++... .+.++||||+||||||+|
T Consensus 155 ~lg~~v~~aVITVPayF~~~qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~-------~~~~vlV~DlGGGT~DvS 227 (657)
T PTZ00186 155 FLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT-------KDSLIAVYDLGGGTFDIS 227 (657)
T ss_pred HhCCccceEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC-------CCCEEEEEECCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999999987542 356899999999999999
Q ss_pred EEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEeee
Q psy7140 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECF 321 (1304)
Q Consensus 242 v~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~~ 321 (1304)
|+++.++.++|+++.|+.+|||+|||..|++|+.++|.++++.++..+++++.+|+.+||++|+.||.+.. +.+.++.+
T Consensus 228 il~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~-~~i~i~~i 306 (657)
T PTZ00186 228 VLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME-TEVNLPFI 306 (657)
T ss_pred EEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc-eEEEEeee
Confidence 99999999999999999999999999999999999999999998888899999999999999999998754 56777765
Q ss_pred cCC----cceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCC
Q psy7140 322 MDD----KDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLN 397 (1304)
Q Consensus 322 ~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~n 397 (1304)
..+ .++.++|||++|+++|+++++++..+++++|+++++++.+|+.|+||||+||||.||++|+++||..+..++|
T Consensus 307 ~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~n 386 (657)
T PTZ00186 307 TANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVN 386 (657)
T ss_pred ccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCC
Confidence 432 4588999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred chhHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeeec
Q psy7140 398 QDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDC 477 (1304)
Q Consensus 398 p~eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~ 477 (1304)
|+||||+|||++|+++++. +..+.++|++||++++.+ .+|.+.++|++++.+|+..++.|++..+||..+ .+
T Consensus 387 PdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p~slgie~--~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v----~i 458 (657)
T PTZ00186 387 PDEAVALGAATLGGVLRGD--VKGLVLLDVTPLSLGIET--LGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQV----GI 458 (657)
T ss_pred CchHHHHhHHHHHHHhccc--cCceEEEeecccccccee--cCCEEEEEEeCCCEeeEEEeeccccccCCCceE----EE
Confidence 9999999999999999985 456788999988887754 577787777766666665666666666665444 44
Q ss_pred CCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcc
Q psy7140 478 PVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQ 515 (1304)
Q Consensus 478 ~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~ 515 (1304)
.+ ++||+.++.+|..||+|+|.||||.|+|.
T Consensus 459 ~i-------~qGe~~~~~~n~~lg~~~l~~ip~~~~G~ 489 (657)
T PTZ00186 459 KV-------FQGEREMAADNQMMGQFDLVGIPPAPRGV 489 (657)
T ss_pred EE-------EEecccccccccccceEEEcCCCCCCCCC
Confidence 43 45778889999999999999999999763
No 22
>KOG0102|consensus
Probab=100.00 E-value=1.8e-78 Score=670.48 Aligned_cols=483 Identities=33% Similarity=0.520 Sum_probs=442.7
Q ss_pred cEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEc-CCceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFS-DKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~-~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
+|+|||+|||||+++++.++.+.++.|.+|.|.+||+|+|. ++++++|..|+.+...||.|+++.-||+||+.+.++.+
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 58999999999999999999999999999999999999995 55899999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
+.+.+..||++++..|+ ...++. .++.++|.++.+++|.+++++|+
T Consensus 108 q~~~k~vpyKiVk~~ng------------------------------daw~e~----~G~~~spsqig~~vl~kmk~tae 153 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNG------------------------------DAWVEA----RGKQYSPSQIGAFVLMKMKETAE 153 (640)
T ss_pred HHHHHhCCcceEEccCC------------------------------cEEEEe----CCeEecHHHHHHHHHHHHHHHHH
Confidence 99999999998876543 333332 57899999999999999999999
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
++++..+..+|+||||||++.||+++++|.++||+++++++|||+|||++|+++.+. ...++|||+||||||+
T Consensus 154 ~yl~~~v~~avvtvpAyfndsqRqaTkdag~iagl~vlrvineptaaalaygld~k~-------~g~iaV~dLgggtfdi 226 (640)
T KOG0102|consen 154 AYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKE-------DGVIAVFDLGGGTFDI 226 (640)
T ss_pred HHcCchhhheeeccHHHHhHHHHHHhHhhhhhccceeeccCCccchhHHhhcccccC-------CCceEEEEcCCceeee
Confidence 999999999999999999999999999999999999999999999999999987642 4679999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEee
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIEC 320 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~ 320 (1304)
|++.+.+|.++|.++.||.++||+|||..+..++..+|+...+++...+.++++||++++|++|+.||+... ..++++.
T Consensus 227 silei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~-tei~lp~ 305 (640)
T KOG0102|consen 227 SILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQ-TEINLPF 305 (640)
T ss_pred eeehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhccc-ceeccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999998654 5677776
Q ss_pred ecCC----cceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCC
Q psy7140 321 FMDD----KDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTL 396 (1304)
Q Consensus 321 ~~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~ 396 (1304)
...+ ..+++++||.+||+++.+++++.+.+++++|++|++..+||+.|+||||++|||.|++.++++||+.+...+
T Consensus 306 iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~v 385 (640)
T KOG0102|consen 306 ITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGV 385 (640)
T ss_pred eeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCc
Confidence 6555 679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeee
Q psy7140 397 NQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYD 476 (1304)
Q Consensus 397 np~eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~ 476 (1304)
||||+||.|||++++.+++.. .+..+.||+ ||++||++.||.++.+|++++.+|...++.|.+..++|+.+ +
T Consensus 386 nPdeava~GAaiqggvl~geV--kdvlLLdVt--pLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V----~ 457 (640)
T KOG0102|consen 386 NPDEAVAGGAAIQGGVLSGEV--KDVLLLDVT--PLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQV----E 457 (640)
T ss_pred CCcchhccchhhccchhhccc--cceeeeecc--hHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceE----E
Confidence 999999999999999999864 555667776 88888999999999999999999999999999999886554 4
Q ss_pred cCCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcceEEEeeeecccCCccccceeeeehhhhhhhhhhhhcccccc
Q psy7140 477 CPVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQVRYGYGWYTTTPTTAVCPIVDMIVRQEDEKKRLMFSRYHNV 556 (1304)
Q Consensus 477 ~~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 556 (1304)
+++ ++||+.+..+|..+|.|.+.||||.| .++||++++ |.++++
T Consensus 458 ikv-------~qgere~~~dnk~lG~f~l~gipp~p----------------RgvpqieVt------------fDIdan- 501 (640)
T KOG0102|consen 458 IKV-------FQGEREMVNDNKLLGSFILQGIPPAP----------------RGVPQIEVT------------FDIDAN- 501 (640)
T ss_pred EEe-------eechhhhhccCcccceeeecccCCCC----------------CCCCceeEE------------EeecCC-
Confidence 553 56889999999999999999999998 679999999 888887
Q ss_pred cccceEEEEEccCcc
Q psy7140 557 QIIMSVIGIDFGTES 571 (1304)
Q Consensus 557 ~~~~~vvGID~Gtt~ 571 (1304)
+...|=++|-||..
T Consensus 502 -GI~~vsA~dk~t~K 515 (640)
T KOG0102|consen 502 -GIGTVSAKDKGTGK 515 (640)
T ss_pred -ceeeeehhhcccCC
Confidence 45566677777753
No 23
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7.3e-76 Score=727.08 Aligned_cols=458 Identities=29% Similarity=0.514 Sum_probs=403.9
Q ss_pred Cc-EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEc-CCceEEcHhHHHhhhhCCCcccccchhhcCCCCCCh
Q psy7140 1 MS-VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFS-DKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDP 78 (1304)
Q Consensus 1 m~-viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~-~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~ 78 (1304)
|. |||||||||||+||++.+|.+.+|+|..|+|.|||+|+|. +++++||..|+.++..+|.++++++||+||+.+.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~- 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE- 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence 53 8999999999999999999999999999999999999997 46899999999999999999999999999999865
Q ss_pred hHHHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHH
Q psy7140 79 FVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDI 158 (1304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~ 158 (1304)
++...+.+||.+... .+|.+.+.+. ..++.++|+++++++|++|++.
T Consensus 80 -~~~~~~~~~~~v~~~------------------------------~~g~~~i~~~--~~~~~~speel~a~iL~~lk~~ 126 (668)
T PRK13410 80 -LDPESKRVPYTIRRN------------------------------EQGNVRIKCP--RLEREFAPEELSAMILRKLADD 126 (668)
T ss_pred -hHHhhccCCeEEEEC------------------------------CCCcEEEEEe--cCCeEEcHHHHHHHHHHHHHHH
Confidence 445566777776543 3455555543 3457899999999999999999
Q ss_pred HHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeE
Q psy7140 159 SENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSAL 238 (1304)
Q Consensus 159 a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~ 238 (1304)
|+.++|.++.++|||||+||++.||+++++||++|||+++++|+||+|||++|++... .+.++||||+|||||
T Consensus 127 ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-------~~~~vlV~DlGgGT~ 199 (668)
T PRK13410 127 ASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS-------SSQTVLVFDLGGGTF 199 (668)
T ss_pred HHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccC-------CCCEEEEEECCCCeE
Confidence 9999999999999999999999999999999999999999999999999999987542 357899999999999
Q ss_pred EEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEE
Q psy7140 239 QVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNI 318 (1304)
Q Consensus 239 dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i 318 (1304)
|+||+++.++.++|+++.|+.+|||++||..|++|+.++|.++++.+...+++++.+|+.+||++|+.||.+.. +.+.+
T Consensus 200 Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~-~~i~i 278 (668)
T PRK13410 200 DVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSV-TDISL 278 (668)
T ss_pred EEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc-eEEEE
Confidence 99999999999999999999999999999999999999999999998888999999999999999999998764 57778
Q ss_pred eeecCC----cceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCC
Q psy7140 319 ECFMDD----KDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPST 394 (1304)
Q Consensus 319 ~~~~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~ 394 (1304)
+++..+ .++...|||++|+++|+++++++..+|+++|+++++++.+|+.|+||||+||||+|+++|+++||..+..
T Consensus 279 ~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~ 358 (668)
T PRK13410 279 PFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQ 358 (668)
T ss_pred eeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCccc
Confidence 776543 4688999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred CCCchhHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeee
Q psy7140 395 TLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAY 474 (1304)
Q Consensus 395 ~~np~eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~ 474 (1304)
++||+||||+|||++|+++++. ++.+.++|++||++++.+ .+|.+.+++++++.+|+..++.|++..+||+.+..
T Consensus 359 ~~npdeaVA~GAAi~aa~ls~~--~~~~~l~Dv~p~slgie~--~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i- 433 (668)
T PRK13410 359 NVNPDEVVAVGAAIQAGILAGE--LKDLLLLDVTPLSLGLET--IGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEI- 433 (668)
T ss_pred CCCCchHHHHhHHHHHHhhccc--ccceeEEeecccccccee--cCCeeEEEEeCCCcccccccccceeccCCCcEEEE-
Confidence 9999999999999999999984 567889999988888755 57777777766666666566666666667665543
Q ss_pred eecCCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcc
Q psy7140 475 YDCPVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQ 515 (1304)
Q Consensus 475 ~~~~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~ 515 (1304)
.+ ++||+.++.+|..||+|.|+|+||.+.|.
T Consensus 434 ---~v-------~qGe~~~~~~n~~lg~~~l~~i~~~~~g~ 464 (668)
T PRK13410 434 ---HV-------WQGEREMASDNKSLGRFKLSGIPPAPRGV 464 (668)
T ss_pred ---EE-------EeeccccccCCceEEEEEEeCCCCCCCCC
Confidence 32 34677788899999999999999998764
No 24
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.5e-75 Score=728.95 Aligned_cols=470 Identities=32% Similarity=0.548 Sum_probs=417.6
Q ss_pred CcEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCCceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 1 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
+++||||||||||+||++.+|++++++|..|+|.+||+|+|.+++++||+.|+.+..++|.++++++||+||+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
+...+.+||.++.. .++.+.+.+.+.++.+.++|++|++++|++|++.|+
T Consensus 84 ~~~~~~~~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae 133 (653)
T PTZ00009 84 QSDMKHWPFKVTTG------------------------------GDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAE 133 (653)
T ss_pred hhhhhcCceEEEEc------------------------------CCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHH
Confidence 98888888875533 356667777777777899999999999999999999
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
.++|.++.++|||||+||++.||+++++||++|||++++||+||+|||++|++.+.. ..+.++||||+||||||+
T Consensus 134 ~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~~-----~~~~~vlv~D~GggT~dv 208 (653)
T PTZ00009 134 AYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKG-----DGEKNVLIFDLGGGTFDV 208 (653)
T ss_pred HHhCCCcceeEEEeCCCCCHHHHHHHHHHHHHcCCceeEEecchHHHHHHHhhhccC-----CCCCEEEEEECCCCeEEE
Confidence 999999999999999999999999999999999999999999999999999976532 235789999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEe
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRY-KIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIE 319 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~ 319 (1304)
||+++.++.++++++.|+.+|||++||..|++|+.++|.+++ +.++..+++++.+|+.+||++|+.||.+.. +.+.++
T Consensus 209 sv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~-~~i~i~ 287 (653)
T PTZ00009 209 SLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQ-ATIEID 287 (653)
T ss_pred EEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCce-EEEEEE
Confidence 999999999999999999999999999999999999998877 467778899999999999999999998764 678898
Q ss_pred eecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcC-CCCCCCCCc
Q psy7140 320 CFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQ 398 (1304)
Q Consensus 320 ~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~-~~~~~~~np 398 (1304)
+++++.++.++|||++|+++|+|+++++..+++++|+++++++.+|+.|+||||+||||+|+++|+++|+ ..+..++||
T Consensus 288 ~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~np 367 (653)
T PTZ00009 288 SLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINP 367 (653)
T ss_pred eccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999997 578899999
Q ss_pred hhHHHHHHHHHhhHhcCC--ceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeee
Q psy7140 399 DEAVSRGCALQCAILSPA--VKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYD 476 (1304)
Q Consensus 399 ~eaVa~Gaa~~aa~ls~~--~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~ 476 (1304)
++|||+|||++|+++++. ++++.+.++|++||++++ +..+|.+.+++++++.+|+..++.|+++.++|..+ .
T Consensus 368 deaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~slgi--~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~----~ 441 (653)
T PTZ00009 368 DEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGL--ETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGV----L 441 (653)
T ss_pred chHHhhhhhhhHHHhcCCccccccceEEEeecccccCc--cccCCceEEEEeCCCcCCccceeEeEeecCCCceE----E
Confidence 999999999999999985 567889999999887665 45677776666655555555555555566665443 4
Q ss_pred cCCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcceEEE
Q psy7140 477 CPVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQVRYG 519 (1304)
Q Consensus 477 ~~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~~~~~ 519 (1304)
+.+ +++++..+.+|..||+|.|.++|+.++|..+|.
T Consensus 442 i~i-------~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~ 477 (653)
T PTZ00009 442 IQV-------FEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477 (653)
T ss_pred EEE-------EecccccCCCCceEEEEEEcCCCCCCCCCceEE
Confidence 443 345667778999999999999999887743333
No 25
>KOG0103|consensus
Probab=100.00 E-value=1.5e-76 Score=676.70 Aligned_cols=471 Identities=53% Similarity=0.878 Sum_probs=448.6
Q ss_pred CcEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCCceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 1 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
|||+|||||..||.+|+.+.|+.++|.|+.++|.||++|+|..++|++|.+|..+..+|+.|++..+||++|+.++||.+
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
|.+.+++||.++. +.||.+++.+.|.+..+.+++++|++|+|.+|+..|+
T Consensus 81 q~~~~~~~~~vv~------------------------------~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae 130 (727)
T KOG0103|consen 81 QREIKSLPRSVVQ------------------------------LKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAE 130 (727)
T ss_pred hhcccccchheee------------------------------cCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHH
Confidence 9988888777553 5688999999999999999999999999999999999
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
+.+..++.+|||+||+||++.||+++.+||++|||++++|++|.+|+||+||+++..+|....++++|+++|+|.+++.+
T Consensus 131 ~~l~~~v~DcvIavP~~FTd~qRravldAA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~ 210 (727)
T KOG0103|consen 131 KNLKSPVSDCVIAVPSYFTDSQRRAVLDAARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQV 210 (727)
T ss_pred HhcCCCCCCeeEeccccccHHHHHHHHhHHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEeccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEee
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIEC 320 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~ 320 (1304)
|++.|..|.+.++++.+|.++||++||+.|.+|++++|+.+|+++.+.++++..||+.+||++|+.||+| ...+.+|+|
T Consensus 211 si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN-~~~plNIEc 289 (727)
T KOG0103|consen 211 SIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSAN-TELPLNIEC 289 (727)
T ss_pred eeeeeccCcceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcC-cCCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 457999999
Q ss_pred ecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchh
Q psy7140 321 FMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDE 400 (1304)
Q Consensus 321 ~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~e 400 (1304)
++++.|.+..|+|++||++|.|+++++..++..+|+++++..+||+.|.+|||+||+|.|+++|.++||+++.+++|.+|
T Consensus 290 fM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dE 369 (727)
T KOG0103|consen 290 FMNDKDVSSKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDE 369 (727)
T ss_pred eeecchhhhhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCc-cceecccCCCCccceeEEEEEEeccceeeeeeeecCC
Q psy7140 401 AVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGE-DGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDCPV 479 (1304)
Q Consensus 401 aVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~-~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~ 479 (1304)
|||+|||+++|++|+.+++|.+.++|+.||++++.|...+.. .....+|+++.|+|.+|.+||++.+.|.+++.|+-+
T Consensus 370 avarG~ALqcAIlSP~frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~- 448 (727)
T KOG0103|consen 370 AVARGAALQCAILSPTFRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKV- 448 (727)
T ss_pred HHHHhHHHHHHhcCccccceecceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccc-
Confidence 999999999999999999999999999999999999866544 344789999999999999999999999999887643
Q ss_pred CCCCcccccccCCCCCCCCceeEEEEcCCCCCCCc
Q psy7140 480 PYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSR 514 (1304)
Q Consensus 480 ~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g 514 (1304)
+.++++-..||+|++.++.+...|
T Consensus 449 -----------~~lp~~~~kI~~~~i~~v~~~~~g 472 (727)
T KOG0103|consen 449 -----------NKLPYPKPKIEKWTITGVTPSEDG 472 (727)
T ss_pred -----------cccCCCCCceeeEEecccccCccc
Confidence 334555689999999999997664
No 26
>KOG0101|consensus
Probab=100.00 E-value=2.2e-76 Score=687.46 Aligned_cols=491 Identities=34% Similarity=0.519 Sum_probs=449.1
Q ss_pred CcEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCCceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 1 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
|.+||||||||+|+|+++.+|.++++.|+.|+|.+||+|+|.++++++|.+|..+...||.|+++++||++|+.++++.+
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v 86 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEV 86 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
+.++++|||.+.. ..++.+.+.+.+.++.+.++|+++++++|..+++.|+
T Consensus 87 ~~~~k~~pf~V~~------------------------------~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae 136 (620)
T KOG0101|consen 87 QSDMKLWPFKVIS------------------------------DQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAE 136 (620)
T ss_pred HhHhhcCCccccc------------------------------ccCCcceEEecccccceeeeeeeeeehhccccHHHHH
Confidence 9999999998762 2345678888888888999999999999999999999
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
.++|..+.++|+|||+||++.||+++.+|+.+||++++++|+||+||||+|++.+.. ....+|||+|+||||||+
T Consensus 137 ~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~~iaGl~vlrii~EPtAaalAygl~k~~-----~~~~~VlI~DlGggtfdv 211 (620)
T KOG0101|consen 137 AYLGKTVKKAVVTVPAYFNDSQRAATKDAALIAGLNVLRIINEPTAAALAYGLDKKV-----LGERNVLIFDLGGGTFDV 211 (620)
T ss_pred HHhcCceeeEEEEecCCcCHHHHHHHHHHHHhcCCceeeeecchHHHHHHhhccccc-----cceeeEEEEEcCCCceee
Confidence 999999999999999999999999999999999999999999999999999977652 467789999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEee
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIEC 320 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~ 320 (1304)
|++.+.+|.+.+.++.|+.++||++||+.|.+|+..+|+++++.++..+.++..||+.+||.+|+.||+.. .+.+.+++
T Consensus 212 s~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~-~~~i~vds 290 (620)
T KOG0101|consen 212 SVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSST-QASIEIDS 290 (620)
T ss_pred eeEEeccchhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccc-cceeccch
Confidence 99999999889999999999999999999999999999999999999999999999999999999997754 57899999
Q ss_pred ecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcC-CCCCCCCCch
Q psy7140 321 FMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQD 399 (1304)
Q Consensus 321 ~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~-~~~~~~~np~ 399 (1304)
+++|.++...|||.+|+++|.+++.++..++..+|+++++++.+|+.|+||||+||+|.+|..++++|+ +.++.++|||
T Consensus 291 L~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpD 370 (620)
T KOG0101|consen 291 LYEGIDFYTSITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPD 370 (620)
T ss_pred hhccccccceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 7889999999
Q ss_pred hHHHHHHHHHhhHhcCCce--eeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeeec
Q psy7140 400 EAVSRGCALQCAILSPAVK--IRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDC 477 (1304)
Q Consensus 400 eaVa~Gaa~~aa~ls~~~~--~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~ 477 (1304)
|+||+|||++||.+++... +.++.+.|+ +|+++||++.+|.|..++++++.+|...++.|+++.|||..+ .|
T Consensus 371 eavA~GAavqaa~~~g~~~~~~~~l~lid~--~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V----~I 444 (620)
T KOG0101|consen 371 EAVAYGAAVQAAILSGDKSLNIQDLLLIDV--APLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGV----LI 444 (620)
T ss_pred HHHHhhHHHHhhhccCCccccccceeeeec--ccccccccccCCcceeeeecccccceeeeeeeeeecCCCCce----eE
Confidence 9999999999999998654 445555555 577999999999999999999999999999999999986655 34
Q ss_pred CCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcceEEEeeeecccCCccccceeeeehhhhhhhhhhhhccccccc
Q psy7140 478 PVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQVRYGYGWYTTTPTTAVCPIVDMIVRQEDEKKRLMFSRYHNVQ 557 (1304)
Q Consensus 478 ~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 557 (1304)
++ |.+|+.++++|+.+|.|.+.||||.| .++|+++++ |.++++
T Consensus 445 ~V-------yEger~~~kdn~~lg~feL~gippap----------------rgvp~Ievt------------fdiD~n-- 487 (620)
T KOG0101|consen 445 QV-------YEGERAMTKDNNLLGKFELTGIPPAP----------------RGVPQIEVT------------FDIDAN-- 487 (620)
T ss_pred EE-------EeccccccccccccceeeecCCCccc----------------cCCcceeEE------------EecCCC--
Confidence 43 45678899999999999999999999 568888888 777776
Q ss_pred ccceEEEEEccCc
Q psy7140 558 IIMSVIGIDFGTE 570 (1304)
Q Consensus 558 ~~~~vvGID~Gtt 570 (1304)
....|-+.|+.|-
T Consensus 488 giL~Vta~d~stg 500 (620)
T KOG0101|consen 488 GILNVTAVDKSTG 500 (620)
T ss_pred cEEEEeeccccCC
Confidence 3344555555553
No 27
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=7.6e-75 Score=721.42 Aligned_cols=468 Identities=29% Similarity=0.504 Sum_probs=408.6
Q ss_pred cEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcC-CceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSD-KNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~-~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
++||||||||||+||++.+|.+++++|..|+|.+||+|+|.+ +++++|..|+.+..++|.++++++||+||+.++++.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 599999999999999999999999999999999999999975 5899999999999999999999999999999999988
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
+...+.+||.++..+ ++.+.+.+ .++.++|+++++++|++|++.|+
T Consensus 122 ~~~~~~~p~~~~~~~------------------------------~~~~~~~~----~~~~~speel~a~iL~~lk~~ae 167 (663)
T PTZ00400 122 KKEQKILPYKIVRAS------------------------------NGDAWIEA----QGKKYSPSQIGAFVLEKMKETAE 167 (663)
T ss_pred HhhhccCCeEEEecC------------------------------CCceEEEE----CCEEECHHHHHHHHHHHHHHHHH
Confidence 888888888866443 34444443 35789999999999999999999
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
.++|.++.++|||||+||++.||+++++||++||+++++||+||+|||++|+.... .+.++|||||||||||+
T Consensus 168 ~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-------~~~~vlV~DlGgGT~Dv 240 (663)
T PTZ00400 168 SYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN-------DGKTIAVYDLGGGTFDI 240 (663)
T ss_pred HHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC-------CCcEEEEEeCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999987542 35789999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEee
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIEC 320 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~ 320 (1304)
||+++.++.++|+++.|+.++||++||..|++|+.++|.++++.+...+++++.+|+.+||++|+.||.+.. +.+.++.
T Consensus 241 Sv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~-~~i~i~~ 319 (663)
T PTZ00400 241 SILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQ-TEINLPF 319 (663)
T ss_pred EEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCc-eEEEEEe
Confidence 999999999999999999999999999999999999999999988888999999999999999999998764 4677776
Q ss_pred ecCC----cceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCC
Q psy7140 321 FMDD----KDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTL 396 (1304)
Q Consensus 321 ~~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~ 396 (1304)
+..+ .++.++|||++|+++|+|+++++..+++++|+++++++.+|+.|+||||+||||+|+++|+++||.++..++
T Consensus 320 ~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~ 399 (663)
T PTZ00400 320 ITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGV 399 (663)
T ss_pred eccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCC
Confidence 6543 478999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred CchhHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeee
Q psy7140 397 NQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYD 476 (1304)
Q Consensus 397 np~eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~ 476 (1304)
||+++||+|||++|+++++. ++.+.+.|++||++++.+ .+|.+.+++++++.+|...++.|++..++| ..+.
T Consensus 400 npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~p~slgi~~--~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q----~~~~ 471 (663)
T PTZ00400 400 NPDEAVAMGAAIQAGVLKGE--IKDLLLLDVTPLSLGIET--LGGVFTRLINRNTTIPTKKSQVFSTAADNQ----TQVG 471 (663)
T ss_pred CCccceeeccHHHHHhhcCC--ccceEEEeccccceEEEe--cCCeeEEEEecCccCCccceeeeeeccCCC----ceEE
Confidence 99999999999999999985 466788999988888765 567777766655555544455555555554 3334
Q ss_pred cCCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcc----eEEEeeeeccc
Q psy7140 477 CPVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQ----VRYGYGWYTTT 526 (1304)
Q Consensus 477 ~~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~----~~~~~~~~~~~ 526 (1304)
+.+ ++|++.++.+|..||+|.|.|+||.+.|. ++|.+|.+|..
T Consensus 472 i~i-------~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil 518 (663)
T PTZ00400 472 IKV-------FQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518 (663)
T ss_pred EEE-------EEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCE
Confidence 443 34677788999999999999999988764 34444444433
No 28
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.1e-74 Score=716.05 Aligned_cols=457 Identities=30% Similarity=0.499 Sum_probs=399.5
Q ss_pred Cc-EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcC-CceEEcHhHHHhhhhCCCcccccchhhcCCCCCCh
Q psy7140 1 MS-VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSD-KNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDP 78 (1304)
Q Consensus 1 m~-viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~-~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~ 78 (1304)
|. +||||||||||+||++.+|.+.+++|..|+|.+||+|+|.+ ++++||..|+.+..++|.++++++||+||+.+++.
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT 80 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch
Confidence 54 89999999999999999999999999999999999999975 58999999999999999999999999999999876
Q ss_pred hHHHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHH
Q psy7140 79 FVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDI 158 (1304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~ 158 (1304)
. ...+.+||.++.. .++.+.+.+ .+..++|+++++++|++|++.
T Consensus 81 ~--~~~~~~~~~~v~~------------------------------~~~~~~~~i----~~~~~~peei~a~iL~~lk~~ 124 (653)
T PRK13411 81 E--EERSRVPYTCVKG------------------------------RDDTVNVQI----RGRNYTPQEISAMILQKLKQD 124 (653)
T ss_pred h--HHhhcCCceEEec------------------------------CCCceEEEE----CCEEECHHHHHHHHHHHHHHH
Confidence 4 3456677765533 344445544 357899999999999999999
Q ss_pred HHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeE
Q psy7140 159 SENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSAL 238 (1304)
Q Consensus 159 a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~ 238 (1304)
|+.++|.++.++|||||+||++.||+++++||++|||++++|++||+|||++|++... ..+.++||||||||||
T Consensus 125 ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAl~y~~~~~------~~~~~vlV~DlGgGT~ 198 (653)
T PRK13411 125 AEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ------DQEQLILVFDLGGGTF 198 (653)
T ss_pred HHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEecchHHHHHHhccccc------CCCCEEEEEEcCCCeE
Confidence 9999999999999999999999999999999999999999999999999999987543 2356899999999999
Q ss_pred EEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEE
Q psy7140 239 QVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNI 318 (1304)
Q Consensus 239 dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i 318 (1304)
|+||+++.++.++|+++.|+.+|||++||..|++|+.++|..+++.+...+++++.+|+.+||++|+.||.+.. +.+.+
T Consensus 199 dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~-~~i~i 277 (653)
T PRK13411 199 DVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLT-TSINL 277 (653)
T ss_pred EEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc-eEEEE
Confidence 99999999999999999999999999999999999999999999988888999999999999999999998754 56777
Q ss_pred eeecC----CcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcC-CCCC
Q psy7140 319 ECFMD----DKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPS 393 (1304)
Q Consensus 319 ~~~~~----~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~-~~~~ 393 (1304)
+++.. +.++.+.|||++|+++|+|+++++..+++++|+++++.+.+|+.|+||||+||||+|++.|+++|| ..+.
T Consensus 278 ~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~ 357 (653)
T PRK13411 278 PFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPD 357 (653)
T ss_pred eeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcC
Confidence 76643 357889999999999999999999999999999999999999999999999999999999999997 6788
Q ss_pred CCCCchhHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeee
Q psy7140 394 TTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQA 473 (1304)
Q Consensus 394 ~~~np~eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~ 473 (1304)
.++||++|||+|||++|+++++. ++++.++|++||++++.+ .++.+.+++++++.+|+..++.|++..++|+.+.
T Consensus 358 ~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~p~slgi~~--~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~- 432 (653)
T PRK13411 358 RSVNPDEAVALGAAIQAGVLGGE--VKDLLLLDVTPLSLGIET--LGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVE- 432 (653)
T ss_pred CCCCchHHHHHHHHHHHHhhcCC--ccceeeeecccceeeEEe--cCCceEEEEECCCcccceeeEEEEeccCCCeEEE-
Confidence 89999999999999999999985 567789999988877654 5777777766666555555555555556655443
Q ss_pred eeecCCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcc
Q psy7140 474 YYDCPVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQ 515 (1304)
Q Consensus 474 ~~~~~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~ 515 (1304)
+.+ ++|++.++.+|..||+|.|.|+||.+.|.
T Consensus 433 ---i~v-------~~ge~~~~~~n~~lg~~~l~~i~~~~~g~ 464 (653)
T PRK13411 433 ---IHV-------LQGERAMAKDNKSLGKFLLTGIPPAPRGV 464 (653)
T ss_pred ---EEE-------EEecCcccccCceeeEEEEcCCCCCCCCC
Confidence 333 45677788899999999999999988763
No 29
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=6.7e-74 Score=712.79 Aligned_cols=457 Identities=29% Similarity=0.491 Sum_probs=400.9
Q ss_pred cEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcC-CceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSD-KNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~-~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
+|||||||||||+||++.+|.+++++|..|+|.+||+|+|.+ +++++|..|+.+...+|.++++++|||||+.+.+ +
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 117 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--V 117 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--h
Confidence 489999999999999999999999999999999999999974 5799999999999999999999999999999875 4
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
+...+.+||.++..+ ++.+.+.+. ..+..++|+++++++|++|++.|+
T Consensus 118 ~~~~~~~~~~v~~~~------------------------------~~~v~~~~~--~~~~~~speei~a~iL~~lk~~ae 165 (673)
T PLN03184 118 DEESKQVSYRVVRDE------------------------------NGNVKLDCP--AIGKQFAAEEISAQVLRKLVDDAS 165 (673)
T ss_pred hhhhhcCCeEEEecC------------------------------CCcEEEEEe--cCCeEEcHHHHHHHHHHHHHHHHH
Confidence 456677787765433 444555443 235689999999999999999999
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
.+++.++.++|||||+||++.||+++++||++||+++++||+||+|||++|++... .+.++||||+||||||+
T Consensus 166 ~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~-------~~~~vlV~DlGgGT~Dv 238 (673)
T PLN03184 166 KFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK-------SNETILVFDLGGGTFDV 238 (673)
T ss_pred HHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccC-------CCCEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999987542 34689999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEee
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIEC 320 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~ 320 (1304)
|++++.++.++|+++.|+.+|||++||..|++|+.++|..+++.+...+++++.+|+.+||++|+.||.+.. +.+.+++
T Consensus 239 Si~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~-~~i~i~~ 317 (673)
T PLN03184 239 SVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQ-TSISLPF 317 (673)
T ss_pred EEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCc-ceEEEEe
Confidence 999999999999999999999999999999999999999999988888999999999999999999998764 4677776
Q ss_pred ecC----CcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCC
Q psy7140 321 FMD----DKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTL 396 (1304)
Q Consensus 321 ~~~----~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~ 396 (1304)
+.. +.++.++|||++|+++|+++++++..+|+++|+++++.+.+|+.|+||||+||||.||+.|+++||..+..++
T Consensus 318 ~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~ 397 (673)
T PLN03184 318 ITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTV 397 (673)
T ss_pred eeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCccccc
Confidence 542 2578899999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred CchhHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeee
Q psy7140 397 NQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYD 476 (1304)
Q Consensus 397 np~eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~ 476 (1304)
||+||||+|||++|+++++. ++.+.++|++||++++.+ .+|.+.+++++++.+|...++.|++..++|+.+..
T Consensus 398 npdeaVA~GAAi~aa~ls~~--~~~~~~~dv~p~slgi~~--~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i--- 470 (673)
T PLN03184 398 NPDEVVALGAAVQAGVLAGE--VSDIVLLDVTPLSLGLET--LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEI--- 470 (673)
T ss_pred CcchHHHHHHHHHHHHhccC--ccceEEEecccccceEEe--cCCeeEEEEeCCCccceecceEeeeecCCCcEEEE---
Confidence 99999999999999999984 456889999999888876 46777777766665555555555555666665543
Q ss_pred cCCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcc
Q psy7140 477 CPVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQ 515 (1304)
Q Consensus 477 ~~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~ 515 (1304)
.+ +++++.++.+|..||+|.|+++||.++|.
T Consensus 471 -~i-------~~ge~~~~~~n~~lg~~~i~~i~~~~~g~ 501 (673)
T PLN03184 471 -NV-------LQGEREFVRDNKSLGSFRLDGIPPAPRGV 501 (673)
T ss_pred -EE-------EeecccccccCceEEEEEEeCCCCCCCCC
Confidence 33 34566778899999999999999988763
No 30
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=7e-74 Score=707.21 Aligned_cols=460 Identities=25% Similarity=0.405 Sum_probs=401.5
Q ss_pred EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCC-ceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhHH
Q psy7140 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-NRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQ 81 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~-~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~ 81 (1304)
+||||||||||+||++.+|++++++|..|++.+||+|+|.++ +++||..|+.+..++|.++++++||+||+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 589999999999999999999999999999999999999755 889999999999999999999999999998876432
Q ss_pred HHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHHh
Q psy7140 82 EELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISEN 161 (1304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~~ 161 (1304)
.+.+||.++.. .+|.+.+.+. +..++|+++++++|++|++.|+.
T Consensus 80 --~~~~~~~~~~~------------------------------~~~~~~~~~~----~~~~~p~ei~a~iL~~lk~~a~~ 123 (599)
T TIGR01991 80 --FSILPYRFVDG------------------------------PGEMVRLRTV----QGTVTPVEVSAEILKKLKQRAEE 123 (599)
T ss_pred --cccCCEEEEEc------------------------------CCCceEEEeC----CCEEcHHHHHHHHHHHHHHHHHH
Confidence 45567665432 3455555553 23789999999999999999999
Q ss_pred hhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEE
Q psy7140 162 EIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241 (1304)
Q Consensus 162 ~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvs 241 (1304)
++|.++.++|||||+||++.||+++++||++||+++++|++||+|||++|++... .+.++||||+||||||+|
T Consensus 124 ~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-------~~~~vlV~DlGgGT~DvS 196 (599)
T TIGR01991 124 SLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA-------SEGIYAVYDLGGGTFDVS 196 (599)
T ss_pred HhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCceEEecCHHHHHHHHhhccC-------CCCEEEEEEcCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999999987542 356899999999999999
Q ss_pred EEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEeee
Q psy7140 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECF 321 (1304)
Q Consensus 242 v~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~~ 321 (1304)
++++.++.++|+++.|+.+|||+|||..|++|+.++ ++.+...+++.+.+|+.+||++|+.||.+.. +.+.++.
T Consensus 197 i~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~-~~i~i~~- 270 (599)
T TIGR01991 197 ILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ----LGISADLNPEDQRLLLQAARAAKEALTDAES-VEVDFTL- 270 (599)
T ss_pred EEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHh----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCce-EEEEEEE-
Confidence 999999999999999999999999999999998754 4566567888999999999999999998653 4566653
Q ss_pred cCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhH
Q psy7140 322 MDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEA 401 (1304)
Q Consensus 322 ~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~ea 401 (1304)
+|.++.++|||++|+++|+|+++++..+++++|+++++++.+|+.|+||||+||||+|+++|+++||..+..++||++|
T Consensus 271 -~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdea 349 (599)
T TIGR01991 271 -DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQV 349 (599)
T ss_pred -CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeeecCCCC
Q psy7140 402 VSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDCPVPY 481 (1304)
Q Consensus 402 Va~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1304)
||+|||++|+++++..+.+.+.++|++||++++.+ .+|.+.+++++++.+|+..++.|++..++|+.+. +.+
T Consensus 350 VA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~--~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~----i~i-- 421 (599)
T TIGR01991 350 VALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIET--MGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMV----IHV-- 421 (599)
T ss_pred HHHHHHHHHHHhccccccCceEEEEeeeeeeEEEe--cCCEEEEEEeCCCcCCccceEEEEEccCCCeEEE----EEE--
Confidence 99999999999999887778899999988887765 5777888887777777777777888788866554 333
Q ss_pred CCcccccccCCCCCCCCceeEEEEcCCCCCCCcc----eEEEeeeeccc
Q psy7140 482 PTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQ----VRYGYGWYTTT 526 (1304)
Q Consensus 482 ~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~----~~~~~~~~~~~ 526 (1304)
++||+.++.+|..||+|.|+|+||.++|. |+|+||.||..
T Consensus 422 -----~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil 465 (599)
T TIGR01991 422 -----VQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLL 465 (599)
T ss_pred -----EeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeE
Confidence 45678888999999999999999988774 44444444433
No 31
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=8.1e-73 Score=705.86 Aligned_cols=457 Identities=32% Similarity=0.521 Sum_probs=400.9
Q ss_pred Cc-EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEc-CCceEEcHhHHHhhhhCCCcccccchhhcCCCCCCh
Q psy7140 1 MS-VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFS-DKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDP 78 (1304)
Q Consensus 1 m~-viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~-~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~ 78 (1304)
|+ +||||||||||+||++.+|.+++++|..|+|.+||+|+|. ++++++|+.|+.+..++|.++++++||+||+. ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 65 9999999999999999999999999999999999999997 67899999999999999999999999999998 56
Q ss_pred hHHHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHH
Q psy7140 79 FVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDI 158 (1304)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~ 158 (1304)
.++...+.+||.++..+ +|...+.+ +++.++|+++++++|++|++.
T Consensus 79 ~~~~~~~~~p~~~~~~~------------------------------~~~~~~~~----~~~~~~peel~a~iL~~lk~~ 124 (627)
T PRK00290 79 EVQKDIKLVPYKIVKAD------------------------------NGDAWVEI----DGKKYTPQEISAMILQKLKKD 124 (627)
T ss_pred HHHHHhhcCCeEEEEcC------------------------------CCceEEEE----CCEEEcHHHHHHHHHHHHHHH
Confidence 67788888888876543 33334433 357899999999999999999
Q ss_pred HHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeE
Q psy7140 159 SENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSAL 238 (1304)
Q Consensus 159 a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~ 238 (1304)
|+.++|.++.++|||||+||++.||+++++||++|||++++||+||+|||++|++... .+.++||||+|||||
T Consensus 125 ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~-------~~~~vlV~D~GggT~ 197 (627)
T PRK00290 125 AEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-------GDEKILVYDLGGGTF 197 (627)
T ss_pred HHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHhhhccC-------CCCEEEEEECCCCeE
Confidence 9999999999999999999999999999999999999999999999999999987542 357899999999999
Q ss_pred EEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEE
Q psy7140 239 QVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNI 318 (1304)
Q Consensus 239 dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i 318 (1304)
|+|++++.++.++++++.|+.++||++||..|++|+.++|..+++.+...+++++.+|+.+||++|+.||.+.. +.+.+
T Consensus 198 dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~-~~i~i 276 (627)
T PRK00290 198 DVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQ-TEINL 276 (627)
T ss_pred EEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCe-EEEEE
Confidence 99999999999999999999999999999999999999999999988888999999999999999999998754 56777
Q ss_pred eeecCC----cceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCC
Q psy7140 319 ECFMDD----KDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPST 394 (1304)
Q Consensus 319 ~~~~~~----~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~ 394 (1304)
+.+..+ .++.++|||++|+++|+++++++..+++++|+++++++.+|+.|+||||+||||+|++.|+++||.++..
T Consensus 277 ~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~ 356 (627)
T PRK00290 277 PFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNK 356 (627)
T ss_pred eecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCc
Confidence 766542 5788999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred CCCchhHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeee
Q psy7140 395 TLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAY 474 (1304)
Q Consensus 395 ~~np~eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~ 474 (1304)
++||++|||+|||++|+++++. ++.+.++|++||++++.+ .+|.+.+++++++.+|...++.|++..++| ..
T Consensus 357 ~~npdeava~GAa~~aa~l~~~--~~~~~~~d~~~~slgi~~--~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q----~~ 428 (627)
T PRK00290 357 GVNPDEVVAIGAAIQGGVLAGD--VKDVLLLDVTPLSLGIET--LGGVMTKLIERNTTIPTKKSQVFSTAADNQ----PA 428 (627)
T ss_pred CcCChHHHHHhHHHHHHHhcCC--ccceeeeeccceEEEEEe--cCCeEEEEecCCCcCCccceEEEEecCCCc----ce
Confidence 9999999999999999999983 567889999988887754 566676666555555544455555545554 33
Q ss_pred eecCCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcce
Q psy7140 475 YDCPVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQV 516 (1304)
Q Consensus 475 ~~~~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~~ 516 (1304)
+.+.+ +++++..+.+|..||+|.|+++|+.++|..
T Consensus 429 ~~i~v-------~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~ 463 (627)
T PRK00290 429 VTIHV-------LQGEREMAADNKSLGRFNLTGIPPAPRGVP 463 (627)
T ss_pred EEEEE-------EEecccccCcCceEEEEEECCCCCCCCCCc
Confidence 44443 345667788899999999999999987743
No 32
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.8e-72 Score=693.99 Aligned_cols=449 Identities=25% Similarity=0.435 Sum_probs=391.3
Q ss_pred cEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCCceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhHH
Q psy7140 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQ 81 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~ 81 (1304)
.+||||||||||+||++.+|++++++|..|++.+||+|+|.+++++||..|+.+...+|.++++++||+||+.+.+. +
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~--~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI--Q 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh--h
Confidence 47999999999999999999999999999999999999999888999999999999999999999999999988753 3
Q ss_pred HHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHHh
Q psy7140 82 EELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISEN 161 (1304)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~~ 161 (1304)
...+.+||.+... .+|.+.+.+. ...++|+++++++|++|++.|+.
T Consensus 98 ~~~~~~~~~~~~~------------------------------~~g~~~~~~~----~~~~~p~ei~a~iL~~lk~~ae~ 143 (616)
T PRK05183 98 QRYPHLPYQFVAS------------------------------ENGMPLIRTA----QGLKSPVEVSAEILKALRQRAEE 143 (616)
T ss_pred hhhhcCCeEEEec------------------------------CCCceEEEec----CCeEcHHHHHHHHHHHHHHHHHH
Confidence 3445566654432 2455555542 23789999999999999999999
Q ss_pred hhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEE
Q psy7140 162 EIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241 (1304)
Q Consensus 162 ~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvs 241 (1304)
++|.++.++|||||+||++.||+++++||++||+++++||+||+|||++|++... .+.++||||+||||||+|
T Consensus 144 ~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-------~~~~vlV~DlGGGT~DvS 216 (616)
T PRK05183 144 TLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG-------QEGVIAVYDLGGGTFDIS 216 (616)
T ss_pred HhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC-------CCCEEEEEECCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999999987542 356899999999999999
Q ss_pred EEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEeee
Q psy7140 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECF 321 (1304)
Q Consensus 242 v~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~~ 321 (1304)
++++.++.++|+++.|+.+|||+|||..|++|+.+++ +.+...+++++.+|+.+||++|+.||.+.. +.+.+..
T Consensus 217 v~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~-~~i~i~~- 290 (616)
T PRK05183 217 ILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADS-VEVSVAL- 290 (616)
T ss_pred EEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCce-EEEEEec-
Confidence 9999999999999999999999999999999998655 445556788999999999999999998754 4555532
Q ss_pred cCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhH
Q psy7140 322 MDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEA 401 (1304)
Q Consensus 322 ~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~ea 401 (1304)
+...|||++|+++|+|+++++..+++++|+++++++.+|+.|+||||+||||+|++.|+++||..+..++||++|
T Consensus 291 -----~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdea 365 (616)
T PRK05183 291 -----WQGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKV 365 (616)
T ss_pred -----CCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHH
Confidence 223499999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeeecCCCC
Q psy7140 402 VSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDCPVPY 481 (1304)
Q Consensus 402 Va~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1304)
||+|||++|+++++......+.++|++||++++.+ .+|.+.+++++++.+|+..++.|++..++|+.+. +.+
T Consensus 366 VA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~--~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~----i~v-- 437 (616)
T PRK05183 366 VAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLET--MGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMA----IHV-- 437 (616)
T ss_pred HHHHHHHHHHHhccccccCceEEEeecccccccee--cCCeEEEEEeCCCcccccccEEEEeccCCCeEEE----EEE--
Confidence 99999999999999877778889999988888764 5777888777777777767777887777765543 333
Q ss_pred CCcccccccCCCCCCCCceeEEEEcCCCCCCCcceE
Q psy7140 482 PTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQVR 517 (1304)
Q Consensus 482 ~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~~~ 517 (1304)
++||+.++.+|..||+|.|.|+|+.|+|..+
T Consensus 438 -----~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~ 468 (616)
T PRK05183 438 -----VQGERELVADCRSLARFELRGIPPMAAGAAR 468 (616)
T ss_pred -----ecccccccccccEEEEEEeCCCCCCCCCCcc
Confidence 4567788899999999999999998877433
No 33
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=7e-72 Score=694.51 Aligned_cols=457 Identities=30% Similarity=0.506 Sum_probs=397.7
Q ss_pred cEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcC-CceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSD-KNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~-~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
.+||||||||||+||++.+|.+++++|..|+|.+||+|+|.+ +++++|+.|+.+...+|.++++++||+||+.+.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 599999999999999999999999999999999999999975 5799999999999999999999999999999765 4
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
....+.+||.++.. .+|.+.+.+. ..+..++|+++++++|++|++.|+
T Consensus 81 ~~~~~~~~~~v~~~------------------------------~~g~i~~~~~--~~~~~~s~eei~a~iL~~l~~~ae 128 (621)
T CHL00094 81 SEEAKQVSYKVKTD------------------------------SNGNIKIECP--ALNKDFSPEEISAQVLRKLVEDAS 128 (621)
T ss_pred HhhhhcCCeEEEEC------------------------------CCCCEEEEEe--cCCeEEcHHHHHHHHHHHHHHHHH
Confidence 55566777776543 2445555443 245689999999999999999999
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
.++|.++.++|||||+||++.||+++++||++||+++++||+||+|||++|+.... .+.++||||+||||||+
T Consensus 129 ~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-------~~~~vlV~DlGgGT~Dv 201 (621)
T CHL00094 129 KYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK-------NNETILVFDLGGGTFDV 201 (621)
T ss_pred HHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhccccC-------CCCEEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999987542 34679999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEee
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIEC 320 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~ 320 (1304)
||+++.++.++|+++.|+.++||++||..|++|+.++|.++++.++..+++++.+|+.+||++|+.||.+.. ..+.+++
T Consensus 202 Sv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~-~~i~i~~ 280 (621)
T CHL00094 202 SILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQ-TEINLPF 280 (621)
T ss_pred EEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCc-eEEEEee
Confidence 999999999999999999999999999999999999999999998888999999999999999999998754 5677776
Q ss_pred ecC----CcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCC
Q psy7140 321 FMD----DKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTL 396 (1304)
Q Consensus 321 ~~~----~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~ 396 (1304)
+.. +.++...|||++|+++|+++++++..+|+++|+++++.+.+|+.|+||||+||||.|++.|+++||..+..++
T Consensus 281 ~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~ 360 (621)
T CHL00094 281 ITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSV 360 (621)
T ss_pred cccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCC
Confidence 543 2468899999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred CchhHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeee
Q psy7140 397 NQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYD 476 (1304)
Q Consensus 397 np~eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~ 476 (1304)
||++|||+|||++|+++++. ++.+.++|++||++++.+ .+|.+.+++++++.+|+..++.|++..++|+.+.
T Consensus 361 ~pdeava~GAA~~aa~ls~~--~~~~~~~d~~~~~lgi~~--~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~---- 432 (621)
T CHL00094 361 NPDEVVAIGAAVQAGVLAGE--VKDILLLDVTPLSLGVET--LGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVE---- 432 (621)
T ss_pred CchhHHHhhhHHHHHHhcCC--ccceeeeeeeceeeeeec--cCCEEEEEEeCCCccceeeeEEEEeccCCCcEEE----
Confidence 99999999999999999983 466789999988776654 5777766665555544444444554455655543
Q ss_pred cCCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcc
Q psy7140 477 CPVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQ 515 (1304)
Q Consensus 477 ~~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~ 515 (1304)
+.+ ++|++.++.+|..||+|.|+++|+.++|.
T Consensus 433 i~i-------~~ge~~~~~~n~~lg~~~i~~~~~~~~g~ 464 (621)
T CHL00094 433 IHV-------LQGERELAKDNKSLGTFRLDGIPPAPRGV 464 (621)
T ss_pred EEE-------EeeccccCCCCCEEEEEEEeCCCCCCCCC
Confidence 333 34677788899999999999999988774
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=6.1e-72 Score=696.78 Aligned_cols=456 Identities=31% Similarity=0.518 Sum_probs=397.0
Q ss_pred cEEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCC-ceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-NRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~-~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
.|||||||||||+||++.+|.+.+++|..|+|.+||+|+|.++ ++++|+.|+.+..++|.++++++||+||+.+. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3899999999999999999999999999999999999999855 89999999999999999999999999999883 35
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
+...+.+||.+. ..+|.+.+.+ .++.++|+++++++|++|++.|+
T Consensus 79 ~~~~~~~~~~v~-------------------------------~~~~~~~~~v----~~~~~~peel~a~~L~~l~~~a~ 123 (595)
T TIGR02350 79 TEEAKRVPYKVV-------------------------------GDGGDVRVKV----DGKEYTPQEISAMILQKLKKDAE 123 (595)
T ss_pred HHHhhcCCeeEE-------------------------------cCCCceEEEE----CCEEecHHHHHHHHHHHHHHHHH
Confidence 666677777632 2344555554 25789999999999999999999
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
.++|.++.++|||||++|++.||+++++||++||+++++||+||+|||++|++... ..+.++|||||||||||+
T Consensus 124 ~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAl~y~~~~~------~~~~~vlV~D~Gggt~dv 197 (595)
T TIGR02350 124 AYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKS------KKDEKILVFDLGGGTFDV 197 (595)
T ss_pred HHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCceEEEecchHHHHHHHhhccc------CCCcEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999987542 246789999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEee
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIEC 320 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~ 320 (1304)
|++++.++.++++++.|+.++||++||..|++|+.++|.++++.+...+++++.+|+.+||++|+.||.+.. +.+.++.
T Consensus 198 sv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~-~~i~i~~ 276 (595)
T TIGR02350 198 SILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLS-TEINLPF 276 (595)
T ss_pred EEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCc-eEEEeee
Confidence 999999999999999999999999999999999999999999988888999999999999999999998754 5677776
Q ss_pred ecC----CcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCC
Q psy7140 321 FMD----DKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTL 396 (1304)
Q Consensus 321 ~~~----~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~ 396 (1304)
+.. +.++.++|||++|+++|+|+++++..+++++|+++++++.+|+.|+||||+||||+|++.|+++||..+..++
T Consensus 277 ~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~ 356 (595)
T TIGR02350 277 ITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSV 356 (595)
T ss_pred cccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCc
Confidence 543 2578899999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred CchhHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeee
Q psy7140 397 NQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYD 476 (1304)
Q Consensus 397 np~eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~ 476 (1304)
||++|||+|||++|+++++. ++.+.++|++||++++.+ .+|.+.+++++++.+|...++.|++..++|+.+ .
T Consensus 357 ~pdeava~GAa~~aa~l~~~--~~~~~~~d~~~~~igi~~--~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v----~ 428 (595)
T TIGR02350 357 NPDEVVAIGAAIQGGVLKGD--VKDVLLLDVTPLSLGIET--LGGVMTKLIERNTTIPTKKSQVFSTAADNQPAV----D 428 (595)
T ss_pred CcHHHHHHHHHHHHHHhcCC--cccceeeecccceeEEEe--cCCceEEEEeCCCcCCccceEeeeccCCCCcEE----E
Confidence 99999999999999999986 567889999988887765 566666655555544444444444444554444 4
Q ss_pred cCCCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcce
Q psy7140 477 CPVPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQV 516 (1304)
Q Consensus 477 ~~~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~~ 516 (1304)
+.+ +++++..+.+|..||+|.|+++|+.++|..
T Consensus 429 i~i-------~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~ 461 (595)
T TIGR02350 429 IHV-------LQGERPMAADNKSLGRFELTGIPPAPRGVP 461 (595)
T ss_pred EEE-------EeecccccccCcEeEEEEECCCCCCCCCCc
Confidence 443 345667788899999999999999887743
No 35
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-70 Score=667.24 Aligned_cols=437 Identities=34% Similarity=0.498 Sum_probs=397.0
Q ss_pred cEEEEEcCcccEEEEEEeCC-ceEEEeCCCCCcccceEEEEcCCc-eEEcHhHHHhhhhCCCcccccchhhcCCCCCChh
Q psy7140 2 SVIGIDFGTESCYLSVAKSG-GIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 79 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~~g-~~~ii~~~~g~r~~Ps~V~~~~~~-~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 79 (1304)
.+||||||||||+||++.++ .+.++.|..|.|.+||+|+|..++ +++|..|+.++..||.++++.+||++|+....
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~-- 83 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG-- 83 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC--
Confidence 38999999999999999988 799999999999999999998765 99999999999999999999999999986210
Q ss_pred HHHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHH
Q psy7140 80 VQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDIS 159 (1304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a 159 (1304)
. .+.+ ...++.++|++|++++|++||+.|
T Consensus 84 --------~-----------------------------------------~~~~--~~~~~~~~~eeisa~~L~~lk~~a 112 (579)
T COG0443 84 --------L-----------------------------------------KISV--EVDGKKYTPEEISAMILTKLKEDA 112 (579)
T ss_pred --------C-----------------------------------------ccee--eeCCeeeCHHHHHHHHHHHHHHHH
Confidence 0 0001 113478999999999999999999
Q ss_pred HhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEE
Q psy7140 160 ENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQ 239 (1304)
Q Consensus 160 ~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~d 239 (1304)
+.+++..++++|||||+||++.||+++++|+++|||+++++++||+|||++|+++.. ++.+|||||+||||||
T Consensus 113 e~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~vlrlinEPtAAAlayg~~~~-------~~~~vlV~DlGGGTfD 185 (579)
T COG0443 113 EAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG-------KEKTVLVYDLGGGTFD 185 (579)
T ss_pred HHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhHhccC-------CCcEEEEEEcCCCCEE
Confidence 999999999999999999999999999999999999999999999999999998764 4678999999999999
Q ss_pred EEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEe
Q psy7140 240 VCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIE 319 (1304)
Q Consensus 240 vsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~ 319 (1304)
+|++++.+|.++|+++.||.+|||+|||..|.+|+..+|..+++.+...++.+++||+.+||++|+.||+... +.++++
T Consensus 186 vSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~-~~i~~~ 264 (579)
T COG0443 186 VSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQ-TSINLP 264 (579)
T ss_pred EEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccc-cccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999764 577777
Q ss_pred eecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCch
Q psy7140 320 CFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQD 399 (1304)
Q Consensus 320 ~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~ 399 (1304)
+...+.++..+|||++||+++.+++.++..++..+|+++++++.+|+.|+||||++|||.|++.++++||+++..++||+
T Consensus 265 ~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpd 344 (579)
T COG0443 265 SIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPD 344 (579)
T ss_pred hccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCcc
Confidence 77777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeeecCC
Q psy7140 400 EAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDCPV 479 (1304)
Q Consensus 400 eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~ 479 (1304)
|+||.|||++|+.+++... ++.++|+. |+++|++..++.+..++.+++.+|+..++.|++..|+|..+. ++
T Consensus 345 eava~GAa~qa~~l~~~~~--d~ll~Dv~--plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~----i~- 415 (579)
T COG0443 345 EAVALGAAIQAAVLSGEVP--DVLLLDVI--PLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVA----IH- 415 (579)
T ss_pred HHHHHHHHHHHHhhcCccc--CceEEeee--eeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeE----EE-
Confidence 9999999999999999765 56677777 555666778889999999999999999999998888755443 33
Q ss_pred CCCCcccccccCCCCCCCCceeEEEEcCCCCCCCc
Q psy7140 480 PYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSR 514 (1304)
Q Consensus 480 ~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g 514 (1304)
++++|+.+..+|..+|.|.+.+|||.|.|
T Consensus 416 ------v~qge~~~~~~~~~lg~f~l~~i~~~~~g 444 (579)
T COG0443 416 ------VFQGEREMAADNKSLGRFELDGIPPAPRG 444 (579)
T ss_pred ------EEecchhhcccCceeEEEECCCCCCCCCC
Confidence 34578889999999999999999999955
No 36
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3.1e-69 Score=659.60 Aligned_cols=424 Identities=24% Similarity=0.397 Sum_probs=356.5
Q ss_pred EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCCceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhHHH
Q psy7140 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQE 82 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~~ 82 (1304)
+||||||||||+||++.+|++++++|..|++.+||+|+|.++++++|..| +++++||+||+.+++.....
T Consensus 21 viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~~ 90 (595)
T PRK01433 21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNTP 90 (595)
T ss_pred EEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccch
Confidence 89999999999999999999999999999999999999998889999987 78999999999876521100
Q ss_pred HhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHHhh
Q psy7140 83 ELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENE 162 (1304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~~~ 162 (1304)
..|..++ . .....++...+. . .++.++|+++++++|++|++.|+.+
T Consensus 91 ----~~~~~~k----------------------~----~~~~~~~~~~~~--~--~~~~~speei~a~iL~~lk~~ae~~ 136 (595)
T PRK01433 91 ----ALFSLVK----------------------D----YLDVNSSELKLN--F--ANKQLRIPEIAAEIFIYLKNQAEEQ 136 (595)
T ss_pred ----hhHhhhh----------------------h----eeecCCCeeEEE--E--CCEEEcHHHHHHHHHHHHHHHHHHH
Confidence 0011000 0 000112222222 2 3578999999999999999999999
Q ss_pred hcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEE
Q psy7140 163 IQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCI 242 (1304)
Q Consensus 163 ~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv 242 (1304)
+|.++.++|||||+||++.||+++++||++||++++++|+||+|||++|++... ....+||||+||||||+|+
T Consensus 137 lg~~v~~aVITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-------~~~~vlV~DlGGGT~DvSi 209 (595)
T PRK01433 137 LKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-------QKGCYLVYDLGGGTFDVSI 209 (595)
T ss_pred hCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC-------CCCEEEEEECCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999987542 2457999999999999999
Q ss_pred EEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEeeec
Q psy7140 243 AAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFM 322 (1304)
Q Consensus 243 ~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~~~ 322 (1304)
+++.++.++|+++.|+.++||+|||.+|++|+..+|. .....+ .++.||++|+.||.+.. +..
T Consensus 210 ~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~------~~~~~~----~~~~~ekaK~~LS~~~~---~~~---- 272 (595)
T PRK01433 210 LNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFD------LPNSID----TLQLAKKAKETLTYKDS---FNN---- 272 (595)
T ss_pred EEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcC------CCCCHH----HHHHHHHHHHhcCCCcc---ccc----
Confidence 9999999999999999999999999999999987662 122222 33469999999998653 111
Q ss_pred CCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHH
Q psy7140 323 DDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAV 402 (1304)
Q Consensus 323 ~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaV 402 (1304)
..++|||++|+++|+|+++++..+++++|++++ ..+|+.|+||||+||||+|++.|+++||.++..+.||++||
T Consensus 273 ----~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaV 346 (595)
T PRK01433 273 ----DNISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAV 346 (595)
T ss_pred ----ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHH
Confidence 278999999999999999999999999999998 67899999999999999999999999998888999999999
Q ss_pred HHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCccceeEEEEEEeccceeeeeeeecCCCCC
Q psy7140 403 SRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDCPVPYP 482 (1304)
Q Consensus 403 a~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1304)
|+|||++|+++++.. ..+.++|++||++++.+ .+|.+.++|++++.+|+..++.|++..++|..+. +.+
T Consensus 347 A~GAAi~a~~l~~~~--~~~~l~Dv~p~slgi~~--~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~----i~v--- 415 (595)
T PRK01433 347 VWGAALQAENLIAPH--TNSLLIDVVPLSLGMEL--YGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQ----FHI--- 415 (595)
T ss_pred HHHHHHHHHHhhCCc--cceEEEEecccceEEEe--cCCEEEEEEECCCcccceeeEEeEeecCCCeEEE----EEE---
Confidence 999999999998753 45678999988888765 5788888888888777777888888888866554 333
Q ss_pred CcccccccCCCCCCCCceeEEEEcCCCCCCCcc
Q psy7140 483 TQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQ 515 (1304)
Q Consensus 483 ~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~ 515 (1304)
++||+.++.+|..||+|.|+|+||.|+|.
T Consensus 416 ----~qGe~~~~~~n~~lg~~~l~~i~~~~~g~ 444 (595)
T PRK01433 416 ----LQGEREMAADCRSLARFELKGLPPMKAGS 444 (595)
T ss_pred ----EeccccccCCCcEEEEEEEcCCCCCCCCC
Confidence 45677888999999999999999988663
No 37
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=8.8e-69 Score=678.01 Aligned_cols=469 Identities=38% Similarity=0.634 Sum_probs=401.9
Q ss_pred EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCCceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhHHH
Q psy7140 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQE 82 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~~~ 82 (1304)
|||||||||||+||++.+|+++++.|..|+|++||+|+|.+++++||..|...+.++|.++++++|||||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHHhh
Q psy7140 83 ELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENE 162 (1304)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~~~ 162 (1304)
..+.+||.++. +++|.+.+.+.+.+....++|+++++++|++|++.|+.+
T Consensus 81 ~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~ 130 (602)
T PF00012_consen 81 EKKKFPYKVVE------------------------------DPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKY 130 (602)
T ss_dssp HHTTSSSEEEE------------------------------ETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccc------------------------------cccccccccccccccceeeeeecccccchhhhcccchhh
Confidence 88888876543 346778888888777789999999999999999999999
Q ss_pred hcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEE
Q psy7140 163 IQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCI 242 (1304)
Q Consensus 163 ~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv 242 (1304)
++..+.++|||||++|++.||+++++||+.||+++++||+||+|||++|++.+.. .++++||||+||||+|+|+
T Consensus 131 ~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~------~~~~vlv~D~Gggt~dvs~ 204 (602)
T PF00012_consen 131 LGEKVTDVVITVPAYFTDEQRQALRDAAELAGLNVLRLINEPTAAALAYGLERSD------KGKTVLVVDFGGGTFDVSV 204 (602)
T ss_dssp HTSBEEEEEEEE-TT--HHHHHHHHHHHHHTT-EEEEEEEHHHHHHHHTTTTSSS------SEEEEEEEEEESSEEEEEE
T ss_pred cccccccceeeechhhhhhhhhcccccccccccccceeecccccccccccccccc------cccceeccccccceEeeee
Confidence 9999999999999999999999999999999999999999999999999876643 5678999999999999999
Q ss_pred EEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccC-CceeeEEEeee
Q psy7140 243 AAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSAN-SNKLPLNIECF 321 (1304)
Q Consensus 243 ~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-~~~~~~~i~~~ 321 (1304)
+++.++.++++++.|+..+||++||..|++++.++|..+++.+...+++.+.+|+.+||++|+.||.. .....+.++.+
T Consensus 205 ~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~ 284 (602)
T PF00012_consen 205 VEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESL 284 (602)
T ss_dssp EEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEE
T ss_pred hhcccccccccccccccccccceecceeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999899999999999999999999983 23467778877
Q ss_pred cC-CcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchh
Q psy7140 322 MD-DKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDE 400 (1304)
Q Consensus 322 ~~-~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~e 400 (1304)
.+ |.++.+.|||++|+++++|+++++..+++++|++++++..+|+.|+||||+||+|+|++.|++.|+..+..++||++
T Consensus 285 ~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~ 364 (602)
T PF00012_consen 285 YDDGEDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDE 364 (602)
T ss_dssp ETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTT
T ss_pred cccccccccccccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhcccccccccccccc
Confidence 77 88999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCCccceecccCCCCcccee--EEEEEEeccceeeeeeeecC
Q psy7140 401 AVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFT--KVLTFYRANVFDVQAYYDCP 478 (1304)
Q Consensus 401 aVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~~~~~~~~~~~~~p~p~~--~~~~~~~~~~~~~~~~~~~~ 478 (1304)
|||+|||++|+.+++.++.+.+.+.|++||++++. ..+|.+..+++. ++++|.+ +.+++..+++.. +.+.
T Consensus 365 aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~~i~--~~~~~~~~ii~~--~t~iP~~~~~~~~t~~~~~~~----i~i~ 436 (602)
T PF00012_consen 365 AVARGAALYAAILSGSFRVKDIKIIDVTPFSIGIE--VSNGKFSKIIPK--NTPIPSKKSKSFKTVTDNQTS----ISID 436 (602)
T ss_dssp HHHHHHHHHHHHHHTSCSSTSSCESEBESSEEEEE--ETTTEEEEEEST--TEBSSEEEEEEEEESSTTCSE----EEEE
T ss_pred ccccccccchhhhcccccccccccccccccccccc--cccccccccccc--ccccccccccccchhcccccc----ccce
Confidence 99999999999999988888888999997777665 456766665554 4555555 445555555443 3333
Q ss_pred CCCCCcccccccCCCCCCCCceeEEEEcCCCCCCCcceEEEeee
Q psy7140 479 VPYPTQFVAYYDCPVPYPTQFVGQFIIKDIKPRTSRQVRYGYGW 522 (1304)
Q Consensus 479 ~~~~~~~~~~~e~~~~~~n~~lg~~~i~~i~~~~~g~~~~~~~~ 522 (1304)
+ ++++.....+|..||+|.|.++++.+.|..+|.+.|
T Consensus 437 i-------~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f 473 (602)
T PF00012_consen 437 I-------YEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTF 473 (602)
T ss_dssp E-------EESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEE
T ss_pred e-------eeccccccccccccccccccccccccccccceeeEE
Confidence 3 334555566789999999999998887754444443
No 38
>KOG0104|consensus
Probab=100.00 E-value=6.7e-62 Score=555.50 Aligned_cols=429 Identities=33% Similarity=0.532 Sum_probs=387.3
Q ss_pred cEEEEEcCcccEEEEEEeCCc-eEEEeCCCCCcccceEEEEcCCceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 2 SVIGIDFGTESCYLSVAKSGG-IETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~~g~-~~ii~~~~g~r~~Ps~V~~~~~~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
+|++||+||.+..||++++|- .+|++|..++|++|++|+|.+++|+||++|.....++|++++..++.++|+...++.+
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 689999999999999999995 5899999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccC-CCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQ-NDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDIS 159 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a 159 (1304)
+...+.+||--+.. + .++.+.|.+. +...+++|++++|+|.+.+..|
T Consensus 103 ~ly~~~~p~~e~v~-----------------------------d~~rstV~F~i~---d~~~ysvEellAMil~~a~~~a 150 (902)
T KOG0104|consen 103 DLYQKRFPFFELVE-----------------------------DPQRSTVVFKIS---DQEEYSVEELLAMILQYAKSLA 150 (902)
T ss_pred HHHHhcCCceeecc-----------------------------cCccceEEEEeC---CccccCHHHHHHHHHHHHHHHH
Confidence 87777776543221 2 2455555542 2478999999999999999999
Q ss_pred HhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEE
Q psy7140 160 ENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQ 239 (1304)
Q Consensus 160 ~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~d 239 (1304)
+.+...+++++|||||.||+++||+++.+|+++||++++.||+|.+||||.|++.++.. ....+++++|||||+|++.
T Consensus 151 e~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~--i~~~~q~~i~YDMGs~sT~ 228 (902)
T KOG0104|consen 151 EEYAKQPIKDMVITVPPFFNQAERRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKE--INETPQHYIFYDMGSGSTS 228 (902)
T ss_pred HHHHhcchhheEEeCCcccCHHHHHHHHHHHHhcCchhhhhhccchHHHhhhhhhcccc--CCCCceEEEEEecCCCcee
Confidence 99999999999999999999999999999999999999999999999999999987542 2346789999999999999
Q ss_pred EEEEEEE------C----CeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCC--CCCCCHHHHHHHHHHHHHhhhcc
Q psy7140 240 VCIAAFV------K----GKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKI--DPRTNARAYIRLLSEIEKLKKQM 307 (1304)
Q Consensus 240 vsv~~~~------~----~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~--~~~~~~~~~~~L~~~~e~~K~~L 307 (1304)
++++.+. . ..+++++.++|..|||..|...|.+|+...|.+.++. ++..++|++.+|.++|+++|..|
T Consensus 229 Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vL 308 (902)
T KOG0104|consen 229 ATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVL 308 (902)
T ss_pred EEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHh
Confidence 9999986 1 4799999999999999999999999999999998864 57789999999999999999999
Q ss_pred ccCCceeeEEEeeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHh
Q psy7140 308 SANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESV 387 (1304)
Q Consensus 308 s~~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~ 387 (1304)
|.|.. +..+|++++++.||...|||++||++|+++..++..+|.++|..++++.++|+.|+|.||+||+|.||+.|.++
T Consensus 309 SANse-a~aqIEsL~ddiDFr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~ 387 (902)
T KOG0104|consen 309 SANSE-AFAQIESLIDDIDFRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKA 387 (902)
T ss_pred hcchh-hHHHHHHHhhccccccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHH
Confidence 99976 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCCCCCCCchhHHHHHHHHHhhHhcCCceeeeeEeeeeeccceEEEEEecCC----ccceecccCCCCccceeEEEE
Q psy7140 388 FH-KPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGG----EDGENLAFSSTQPVPFTKVLT 462 (1304)
Q Consensus 388 f~-~~~~~~~np~eaVa~Gaa~~aa~ls~~~~~~~~~~~dv~~~~~~i~~~~~~~----~~~~~~~~~~~~p~p~~~~~~ 462 (1304)
.| .++...+|.|||+++||+++||.||..+++.++.+.|..+||+.+.+....| ....-..|.++.|+|..++.+
T Consensus 388 v~~~ei~knlNaDEA~vmGav~~aA~LSksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~ 467 (902)
T KOG0104|consen 388 VGKEELGKNLNADEAAVMGAVYQAAHLSKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVIT 467 (902)
T ss_pred HhHHHHhcccChhHHHHHHHHHHHHhhcccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceee
Confidence 98 5788999999999999999999999999999999999999999998876644 112234778899999988666
Q ss_pred EEe
Q psy7140 463 FYR 465 (1304)
Q Consensus 463 ~~~ 465 (1304)
|..
T Consensus 468 ~~~ 470 (902)
T KOG0104|consen 468 FTS 470 (902)
T ss_pred ccc
Confidence 654
No 39
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=6.2e-53 Score=498.28 Aligned_cols=336 Identities=20% Similarity=0.288 Sum_probs=286.0
Q ss_pred EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEc----------------------------------------
Q psy7140 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFS---------------------------------------- 42 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~---------------------------------------- 42 (1304)
++|||||||||+||++.+|++++++++.|++.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6899999999999999999999999999999999999994
Q ss_pred -CCceEEcHhHHHhhhhCCCcc--cccchhhcCCCCCChhHHHHhhcCCccccccCCCCccccccCCCchhhhhhccCcc
Q psy7140 43 -DKNRILGVAAKNQTVTNVKNT--IFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPF 119 (1304)
Q Consensus 43 -~~~~~vG~~A~~~~~~~~~~~--i~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (1304)
++..++|..|+.++..+|.++ +.++||+||.....
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~------------------------------------------ 119 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK------------------------------------------ 119 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCC------------------------------------------
Confidence 446789999999999999998 77999999975210
Q ss_pred ccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHHhhhcCccceEEEeecCCCC-----HHHHHH---HHHHHH
Q psy7140 120 QSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFT-----NNERKA---LLTAAS 191 (1304)
Q Consensus 120 ~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~-----~~qr~~---l~~A~~ 191 (1304)
.+....++++++++|++|++.|+.++|.++.++|||||++|+ +.||++ +++||+
T Consensus 120 ------------------~~~~~~~e~l~a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~ 181 (450)
T PRK11678 120 ------------------PQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAK 181 (450)
T ss_pred ------------------ccceeCHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHH
Confidence 012234899999999999999999999999999999999998 788766 799999
Q ss_pred HcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECC-------eEEEEEEecCCCcccH
Q psy7140 192 IAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKG-------KLKVLSNVCDSEIGGR 264 (1304)
Q Consensus 192 ~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~-------~~~v~~~~~~~~lGG~ 264 (1304)
.||++++++++||+|||++|+... ..+..+||||+||||||+|++++.++ ..+++++.| .++||+
T Consensus 182 ~AG~~~v~li~EPtAAAl~y~~~~-------~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~ 253 (450)
T PRK11678 182 RAGFKDVEFQFEPVAAGLDFEATL-------TEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGN 253 (450)
T ss_pred HcCCCEEEEEcCHHHHHHHhcccc-------CCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChH
Confidence 999999999999999999998532 24678999999999999999999653 368999987 689999
Q ss_pred HHHHHHH-HHHHHHHHH----HcCCCC-----------------------------------CCCHHHH-----------
Q psy7140 265 NIDKILA-EYISTDFVK----RYKIDP-----------------------------------RTNARAY----------- 293 (1304)
Q Consensus 265 ~~D~~l~-~~l~~~~~~----~~~~~~-----------------------------------~~~~~~~----------- 293 (1304)
|||..|+ +++...|.. +++.+. ..+++.+
T Consensus 254 DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~ 333 (450)
T PRK11678 254 DLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRL 333 (450)
T ss_pred HHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhh
Confidence 9999998 677776641 111100 0122222
Q ss_pred -HHHHHHHHHhhhccccCCceeeEEEeeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEc
Q psy7140 294 -IRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVG 372 (1304)
Q Consensus 294 -~~L~~~~e~~K~~Ls~~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvG 372 (1304)
.+|+.+||++|+.||.+.. +.+.++... .++..+|||++|+++++++++++..+++++|+++++. ++.|+|||
T Consensus 334 ~~~L~~~aE~aK~~LS~~~~-a~i~~~~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvG 407 (450)
T PRK11678 334 SYRLVRSAEEAKIALSDQAE-TRASLDFIS--DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTG 407 (450)
T ss_pred hHHHHHHHHHHHHHcCCCCc-eEEEecccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcC
Confidence 3688999999999998764 566666443 4578999999999999999999999999999999976 47899999
Q ss_pred CCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhH
Q psy7140 373 GSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 373 G~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa~ 412 (1304)
|+|+||.|++.|++.||..+....+|+++||.|+|++|..
T Consensus 408 GsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 408 GSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQV 447 (450)
T ss_pred cccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHHh
Confidence 9999999999999999987788889999999999999975
No 40
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.5e-50 Score=478.01 Aligned_cols=336 Identities=21% Similarity=0.296 Sum_probs=286.8
Q ss_pred EEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEe----------------------------------------
Q psy7140 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFS---------------------------------------- 601 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~---------------------------------------- 601 (1304)
++|||||||||+||++.+|.+++++++.|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5899999999999999999999999999999999999994
Q ss_pred -CCceEEcHhHHhhhhcCCCcc--hhhhhHhcCCCCCChhHHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHH
Q psy7140 602 -DKNRILGVAAKNQTVTNVKNT--IFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTA 678 (1304)
Q Consensus 602 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a 678 (1304)
++..++|..|..+...+|.++ +.++|++||...-.+ .....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------------------~~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------------------QQVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------------------cceeCHHHHHH
Confidence 446789999999999999998 679999999752110 11234899999
Q ss_pred HHHHHHHHHHHhhhccccceEEEeecCCCC-----HHHHHH---HHHHHHHcCCceeeeechhHHHHHHhccccCCCCCC
Q psy7140 679 MLFTKLKDISENEIQNKVHDCVLAVPSYFT-----NNERKA---LLTAASIAGLNVLRLINETTATALAYGIYKQDLPED 750 (1304)
Q Consensus 679 ~~L~~l~~~a~~~~~~~~~~~VitVP~~f~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~ 750 (1304)
++|++|++.++.++|.++.++|||||++|+ +.||++ +++||+.||+++++|++||+|||++|+...
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~------ 205 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL------ 205 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc------
Confidence 999999999999999999999999999998 788766 799999999999999999999999998632
Q ss_pred CCCCcEEEEEEeCCceeEEEEEEEECC-------eEEEEEEecCCCCCcHHHHHHHH-HHHHHHHHH----hcCCCC---
Q psy7140 751 DQNPRYVAFVDFGYSALQVCIAAFVKG-------KLKVLSNVCDSEIGGRNIDKILA-EYISTDFVK----RYKIDP--- 815 (1304)
Q Consensus 751 ~~~~~~vlv~D~Gggt~dvsvv~~~~~-------~~~v~~~~~~~~lGG~~~D~~l~-~~l~~~~~~----~~~~~~--- 815 (1304)
..++.+||||+||||+|+|++++.++ ..+++++.| ..+||++||..|+ +++...|.. +++.++
T Consensus 206 -~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~ 283 (450)
T PRK11678 206 -TEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSL 283 (450)
T ss_pred -CCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcch
Confidence 34688999999999999999999754 368999998 5899999999998 678877752 111100
Q ss_pred --------------------------------CCCHHHH------------HHHHHHHHHHHHHhccCCceeeeEEeeec
Q psy7140 816 --------------------------------RTNARAY------------IRLLSEIEKLKKQMSANSNKLPLNIECFM 851 (1304)
Q Consensus 816 --------------------------------~~~~~~~------------~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~ 851 (1304)
..+++.+ .+|+.+||++|+.||.+.. +++.++.+.
T Consensus 284 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~-a~i~~~~~~ 362 (450)
T PRK11678 284 PFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAE-TRASLDFIS 362 (450)
T ss_pred hhhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCc-eEEEecccC
Confidence 1133333 3688999999999998654 577777553
Q ss_pred CCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHH
Q psy7140 852 DDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAV 931 (1304)
Q Consensus 852 ~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eav 931 (1304)
.++..+|||++|+++++++++++..+++++|+++++. ++.|+||||+||+|.|++.|++.||.......+|.++|
T Consensus 363 --~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sV 437 (450)
T PRK11678 363 --DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSV 437 (450)
T ss_pred --CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchH
Confidence 4678899999999999999999999999999999976 47899999999999999999999987767778999999
Q ss_pred HhHHHHHhhH
Q psy7140 932 SRGCALQCAI 941 (1304)
Q Consensus 932 a~Gaa~~aa~ 941 (1304)
|.|+|++|+.
T Consensus 438 a~Gla~~a~~ 447 (450)
T PRK11678 438 TAGLARWAQV 447 (450)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 41
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=7.1e-36 Score=347.19 Aligned_cols=309 Identities=17% Similarity=0.252 Sum_probs=237.1
Q ss_pred EEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCC--ce-EEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 4 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK--NR-ILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 4 iGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~--~~-~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
+||||||+||.|+.. ++..++. .||+|+|..+ .. .+|++|+....+.|.+.... +
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~--~----------- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI--R----------- 63 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--c-----------
Confidence 899999999999875 4445553 5999999854 23 58999988776666554321 0
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
|. .+..+...+++..+|+++.+.+.
T Consensus 64 -------pi------------------------------------------------~~G~i~d~~~~~~~l~~~~~~~~ 88 (336)
T PRK13928 64 -------PL------------------------------------------------RDGVIADYDVTEKMLKYFINKAC 88 (336)
T ss_pred -------cC------------------------------------------------CCCeEecHHHHHHHHHHHHHHHh
Confidence 10 01122334566777788776543
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
.........+|||||++|+..||+++.+|++.||++.+.+++||+|||++|+.... .+..++|||+||||||+
T Consensus 89 ~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-------~~~~~lVvDiGggttdv 161 (336)
T PRK13928 89 GKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS-------QPSGNMVVDIGGGTTDI 161 (336)
T ss_pred ccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc-------CCCeEEEEEeCCCeEEE
Confidence 32222334799999999999999999999999999999999999999999986432 34568999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCc---eeeEE
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPLN 317 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~~~~~ 317 (1304)
++++... + ...++.++||++||+.|++++..+|. .... ...||++|+.++.... ...+.
T Consensus 162 svv~~g~--~---~~~~~~~lGG~did~~i~~~l~~~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~ 223 (336)
T PRK13928 162 AVLSLGG--I---VTSSSIKVAGDKFDEAIIRYIRKKYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEME 223 (336)
T ss_pred EEEEeCC--E---EEeCCcCCHHHHHHHHHHHHHHHHhc----hhcC---------HHHHHHHHHHhcccccccCCcEEE
Confidence 9998742 1 13458899999999999999976652 2211 2568999998875311 11222
Q ss_pred Ee--eecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCccc-EEEEEcCCCCchhHHHHHHHhcCCCC
Q psy7140 318 IE--CFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESK--LPVNAIH-SIEIVGGSSRIPAFKNVIESVFHKPP 392 (1304)
Q Consensus 318 i~--~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~--~~~~~i~-~ViLvGG~sr~p~v~~~l~~~f~~~~ 392 (1304)
+. ....+.+..++|+|++|++++.++++++.+.++++|+.++ +..+.++ .|+|+||+|++|.|++.|++.|+.++
T Consensus 224 v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v 303 (336)
T PRK13928 224 IRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPV 303 (336)
T ss_pred EecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCc
Confidence 22 2244567789999999999999999999999999999886 4456677 79999999999999999999999988
Q ss_pred CCCCCchhHHHHHHHHHhhHhc
Q psy7140 393 STTLNQDEAVSRGCALQCAILS 414 (1304)
Q Consensus 393 ~~~~np~eaVa~Gaa~~aa~ls 414 (1304)
....||+++||+|||+++..+.
T Consensus 304 ~~~~~P~~ava~Gaa~~~~~~~ 325 (336)
T PRK13928 304 YIAEDPISCVALGTGKMLENID 325 (336)
T ss_pred eecCCHHHHHHHHHHHHHhchH
Confidence 8889999999999999987643
No 42
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2.2e-35 Score=341.54 Aligned_cols=306 Identities=20% Similarity=0.267 Sum_probs=241.7
Q ss_pred EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCCc---eEEcHhHHHhhhhCCCcccccchhhcCCCCCChh
Q psy7140 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN---RILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 79 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~~---~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 79 (1304)
.+||||||+|++| |.+++.. +.| .||+|+|++++ ..||++|+.+..++|.++... +-+.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi~------- 67 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPMK------- 67 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecCC-------
Confidence 5899999999975 5556543 444 49999998543 468999999988888876543 1110
Q ss_pred HHHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHH
Q psy7140 80 VQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDIS 159 (1304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a 159 (1304)
+| .+..-++++.+|++++..+
T Consensus 68 ----------------------------------------------~G-------------~I~d~d~~~~~l~~~~~~~ 88 (335)
T PRK13929 68 ----------------------------------------------DG-------------VIADYDMTTDLLKQIMKKA 88 (335)
T ss_pred ----------------------------------------------CC-------------ccCCHHHHHHHHHHHHHHH
Confidence 00 1122368899999999998
Q ss_pred HhhhcCccc--eEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCe
Q psy7140 160 ENEIQNKVH--DCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSA 237 (1304)
Q Consensus 160 ~~~~~~~~~--~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT 237 (1304)
+..++..+. .+|||||++|+..||+++.+|++.||++++.+++||+|||++|++.. ..+..++|+|+||||
T Consensus 89 ~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~-------~~~~~~lvvDiG~gt 161 (335)
T PRK13929 89 GKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLPV-------DEPVANVVVDIGGGT 161 (335)
T ss_pred HHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCCeeEeecCHHHHHHhcCCCc-------CCCceEEEEEeCCCe
Confidence 888876554 79999999999999999999999999999999999999999997643 235678999999999
Q ss_pred EEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCc---ee
Q psy7140 238 LQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KL 314 (1304)
Q Consensus 238 ~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~~ 314 (1304)
||++++++.. .+ ..++..+||++||+.|.+++.+.+ +.... ...||++|+.++.... ..
T Consensus 162 t~v~vi~~~~-~~----~~~~~~~GG~~id~~l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~ 223 (335)
T PRK13929 162 TEVAIISFGG-VV----SCHSIRIGGDQLDEDIVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPE 223 (335)
T ss_pred EEEEEEEeCC-EE----EecCcCCHHHHHHHHHHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCc
Confidence 9999998643 21 345678999999999999987543 33321 2579999999986321 11
Q ss_pred eEEEe--eecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCccc-EEEEEcCCCCchhHHHHHHHhcC
Q psy7140 315 PLNIE--CFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKL--PVNAIH-SIEIVGGSSRIPAFKNVIESVFH 389 (1304)
Q Consensus 315 ~~~i~--~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~--~~~~i~-~ViLvGG~sr~p~v~~~l~~~f~ 389 (1304)
.+.+. .+..+....+++++++|+++|.+++.++.+.+.++|+++.. ..+.++ .|+|+||+|++|.+++.|++.|+
T Consensus 224 ~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~ 303 (335)
T PRK13929 224 TMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIV 303 (335)
T ss_pred eEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHC
Confidence 12222 12345567899999999999999999999999999998854 335677 69999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHh
Q psy7140 390 KPPSTTLNQDEAVSRGCALQC 410 (1304)
Q Consensus 390 ~~~~~~~np~eaVa~Gaa~~a 410 (1304)
.++....||+++||+||+..-
T Consensus 304 ~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 304 VPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred CCceeCCCHHHHHHHHHHHHH
Confidence 988888999999999999874
No 43
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=4.2e-35 Score=340.76 Aligned_cols=308 Identities=17% Similarity=0.243 Sum_probs=236.5
Q ss_pred EEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCC--c-eEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhH
Q psy7140 563 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK--N-RILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 639 (1304)
Q Consensus 563 vGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~ 639 (1304)
+||||||++|+++.. +...++. +||+|+|..+ . ..+|.+|.....+.|.+....
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~-------------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI-------------- 62 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--------------
Confidence 899999999999876 3333332 6999999853 2 368999987665555444320
Q ss_pred HHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHH
Q psy7140 640 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA 719 (1304)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa 719 (1304)
.|. .+|. +...++...+++++.+.+..........+|||||++|++.||+++++|+
T Consensus 63 ------~pi-----~~G~-------------i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 63 ------RPL-----RDGV-------------IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ------ccC-----CCCe-------------EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 111 1111 1223455666777765443322233447999999999999999999999
Q ss_pred HHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHH
Q psy7140 720 SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799 (1304)
Q Consensus 720 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l 799 (1304)
+.||++.+.+++||+|||++|+... +.+..++|||+||||||+++++... ....++.++||++||+.|
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~-------~~~~~~lVvDiGggttdvsvv~~g~-----~~~~~~~~lGG~did~~i 186 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDI-------SQPSGNMVVDIGGGTTDIAVLSLGG-----IVTSSSIKVAGDKFDEAI 186 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCcc-------cCCCeEEEEEeCCCeEEEEEEEeCC-----EEEeCCcCCHHHHHHHHH
Confidence 9999999999999999999998732 3456799999999999999998753 123457899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCc---eeeeEEe--eecCCcceEEEecHHHHHHHHHHHHH
Q psy7140 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPLNIE--CFMDDKDVHAELKRNDLETLCEHIFG 874 (1304)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~---~~~~~ie--~l~~~~d~~~~itr~efe~l~~~~~~ 874 (1304)
++++..+|.. ... ...||++|+.++.... ...+.+. .+..+.+..+.|+|++|++++.+.++
T Consensus 187 ~~~l~~~~~~----~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~ 253 (336)
T PRK13928 187 IRYIRKKYKL----LIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVS 253 (336)
T ss_pred HHHHHHHhch----hcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHH
Confidence 9999877632 111 2579999999875311 1122222 23456677899999999999999999
Q ss_pred HHHHHHHHHHHhcC--CCCCcee-EEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHh
Q psy7140 875 RIEICLNKCIAESK--LPVNAIH-SIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAIL 942 (1304)
Q Consensus 875 ~i~~~i~~~l~~~~--~~~~~I~-~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~l 942 (1304)
++.+.++++|+.++ +..+.++ .|+|+||+|++|.|++.|++.|+.++....||++|||+|||++++.+
T Consensus 254 ~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 254 AIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 99999999999886 4456677 79999999999999999999999999888999999999999998764
No 44
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2.5e-34 Score=332.65 Aligned_cols=306 Identities=19% Similarity=0.266 Sum_probs=242.3
Q ss_pred EEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCCc---eEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChh
Q psy7140 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN---RILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 638 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~ 638 (1304)
.+||||||+++++ +.+++. ++.| .||+|+|..+. ..+|.+|..+..++|.++... +-+ .
T Consensus 6 ~~giDlGt~~~~i--~~~~~~-~~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi----~--- 67 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKG-IILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPM----K--- 67 (335)
T ss_pred eEEEEcccccEEE--EECCCc-EEec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecC----C---
Confidence 5899999999975 444543 3444 49999998542 479999999888888776552 111 0
Q ss_pred HHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccc--eEEEeecCCCCHHHHHHHH
Q psy7140 639 VQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVH--DCVLAVPSYFTNNERKALL 716 (1304)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~--~~VitVP~~f~~~qr~~l~ 716 (1304)
+|. +.--++++++|++++..++..++..+. .+|||||++|++.||+++.
T Consensus 68 ----------------~G~-------------I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 68 ----------------DGV-------------IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred ----------------CCc-------------cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 111 111368899999999988877776554 7999999999999999999
Q ss_pred HHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHH
Q psy7140 717 TAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNID 796 (1304)
Q Consensus 717 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D 796 (1304)
+|++.||++++.+++||+|||++|++.. +.+..++|+|+||||||++++++.+ ....++..+||++||
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~-------~~~~~~lvvDiG~gtt~v~vi~~~~-----~~~~~~~~~GG~~id 186 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPV-------DEPVANVVVDIGGGTTEVAIISFGG-----VVSCHSIRIGGDQLD 186 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCc-------CCCceEEEEEeCCCeEEEEEEEeCC-----EEEecCcCCHHHHHH
Confidence 9999999999999999999999997632 3467899999999999999998754 223456789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCc---eeeeEEe--eecCCcceEEEecHHHHHHHHHH
Q psy7140 797 KILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPLNIE--CFMDDKDVHAELKRNDLETLCEH 871 (1304)
Q Consensus 797 ~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~---~~~~~ie--~l~~~~d~~~~itr~efe~l~~~ 871 (1304)
+.|.+++...| +.... ...||++|+.++.... ...+.+. .+..+.+..++++|++|+++|.+
T Consensus 187 ~~l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~ 253 (335)
T PRK13929 187 EDIVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRE 253 (335)
T ss_pred HHHHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHH
Confidence 99999998655 22221 2579999999986321 1122222 23345567889999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCC--CCcee-EEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHh
Q psy7140 872 IFGRIEICLNKCIAESKLP--VNAIH-SIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQC 939 (1304)
Q Consensus 872 ~~~~i~~~i~~~l~~~~~~--~~~I~-~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a 939 (1304)
++.++...+.++|+.++.. .+.++ .|+|+||+|++|.+++.|++.|+.++....||+++|+.||+..-
T Consensus 254 ~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 254 SLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 9999999999999988644 35677 69999999999999999999999999888999999999999874
No 45
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.9e-33 Score=324.25 Aligned_cols=307 Identities=19% Similarity=0.274 Sum_probs=227.0
Q ss_pred EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCC-c--eEEcHhHHHhhhhCCCcccccchhhcCCCCCChh
Q psy7140 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-N--RILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 79 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~-~--~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 79 (1304)
.|||||||++++++. .|+..++ .+||+|+|.++ + .++|++|+.+..++|.++... +
T Consensus 7 ~igIDlGt~~~~i~~--~~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~---------- 65 (334)
T PRK13927 7 DLGIDLGTANTLVYV--KGKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--R---------- 65 (334)
T ss_pred eeEEEcCcceEEEEE--CCCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--e----------
Confidence 489999999999854 3332333 27999999754 3 479999998877666553321 1
Q ss_pred HHHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHH
Q psy7140 80 VQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDIS 159 (1304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a 159 (1304)
|.. +| .... -+.+..+++++....
T Consensus 66 --------pi~-----------------------------------~G------------~i~d-~~~~~~ll~~~~~~~ 89 (334)
T PRK13927 66 --------PMK-----------------------------------DG------------VIAD-FDVTEKMLKYFIKKV 89 (334)
T ss_pred --------cCC-----------------------------------CC------------eecC-HHHHHHHHHHHHHHH
Confidence 110 00 0011 123344555554433
Q ss_pred HhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEE
Q psy7140 160 ENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQ 239 (1304)
Q Consensus 160 ~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~d 239 (1304)
...... ...+|+|||++|++.+|++++.|++.||++.+.+++||+|||++|+... ..+..++|||+||||||
T Consensus 90 ~~~~~~-~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~-------~~~~~~lvvDiGggttd 161 (334)
T PRK13927 90 HKNFRP-SPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPV-------TEPTGSMVVDIGGGTTE 161 (334)
T ss_pred hhccCC-CCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcc-------cCCCeEEEEEeCCCeEE
Confidence 222211 2379999999999999999999999999999999999999999997643 23456899999999999
Q ss_pred EEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCce---eeE
Q psy7140 240 VCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNK---LPL 316 (1304)
Q Consensus 240 vsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~---~~~ 316 (1304)
+++++..... ..++.++||++||+.|.+++.+++ +... . ...||++|+.++..... ..+
T Consensus 162 vs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~----~~~~--~-------~~~ae~iK~~~~~~~~~~~~~~~ 223 (334)
T PRK13927 162 VAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNY----NLLI--G-------ERTAERIKIEIGSAYPGDEVLEM 223 (334)
T ss_pred EEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHh----CcCc--C-------HHHHHHHHHHhhccCCCCCCceE
Confidence 9998875321 234668999999999999987544 3221 1 24689999998753211 112
Q ss_pred EE--eeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCccc-EEEEEcCCCCchhHHHHHHHhcCCC
Q psy7140 317 NI--ECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP--VNAIH-SIEIVGGSSRIPAFKNVIESVFHKP 391 (1304)
Q Consensus 317 ~i--~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~sr~p~v~~~l~~~f~~~ 391 (1304)
.+ +....+.+..++|+|++|++++.+.+.++.+.+.++|++++.. .+.++ .|+|+||+|++|.+++.|++.|+.+
T Consensus 224 ~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~ 303 (334)
T PRK13927 224 EVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLP 303 (334)
T ss_pred EEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCC
Confidence 22 2233556678999999999999999999999999999988643 22334 5999999999999999999999988
Q ss_pred CCCCCCchhHHHHHHHHHhhH
Q psy7140 392 PSTTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 392 ~~~~~np~eaVa~Gaa~~aa~ 412 (1304)
+....||+++||+|||+++..
T Consensus 304 v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 304 VHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred cEecCCHHHHHHHHHHHHHhh
Confidence 888999999999999999875
No 46
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=9.4e-33 Score=320.94 Aligned_cols=307 Identities=19% Similarity=0.243 Sum_probs=224.5
Q ss_pred EEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCC-----c--eEEcHhHHHhhhhCCCcccccchhhcCCCCC
Q psy7140 4 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-----N--RILGVAAKNQTVTNVKNTIFGFKRLLGRTYD 76 (1304)
Q Consensus 4 iGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~-----~--~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~ 76 (1304)
+||||||+||.++....| .++ ..||+|+|.++ + ..+|++|+....+.|.+.. +++-+.
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~---- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMK---- 69 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCC----
Confidence 899999999998874332 233 37999999744 3 5689999887665555532 121111
Q ss_pred ChhHHHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHH
Q psy7140 77 DPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLK 156 (1304)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk 156 (1304)
+| .... -+.+..+++++.
T Consensus 70 -------------------------------------------------~G------------~i~d-~~~~~~~~~~~l 87 (333)
T TIGR00904 70 -------------------------------------------------DG------------VIAD-FEVTEKMIKYFI 87 (333)
T ss_pred -------------------------------------------------CC------------EEEc-HHHHHHHHHHHH
Confidence 01 1111 123344455554
Q ss_pred HHHHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCC
Q psy7140 157 DISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYS 236 (1304)
Q Consensus 157 ~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~Ggg 236 (1304)
.......+.....+|+|||++|+..+|+++++|++.||++.+.+++||+|||++|+... ..+..++|||+|||
T Consensus 88 ~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~-------~~~~~~lVvDiG~g 160 (333)
T TIGR00904 88 KQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPV-------EEPTGSMVVDIGGG 160 (333)
T ss_pred HHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHhcCCcc-------cCCceEEEEEcCCC
Confidence 43322212222389999999999999999999999999999999999999999997532 23457899999999
Q ss_pred eEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCce---
Q psy7140 237 ALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNK--- 313 (1304)
Q Consensus 237 T~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~--- 313 (1304)
|||++++++..-. ..++.++||++||+.|++++.+++ +.... .+.||++|+.++.....
T Consensus 161 ttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~ 222 (333)
T TIGR00904 161 TTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDE 222 (333)
T ss_pred eEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHHh----cccCC---------HHHHHHHHHHHhcccccccc
Confidence 9999999875321 235668999999999999987554 22211 35789999998753211
Q ss_pred -eeEEEee--ecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-Ccc-c-EEEEEcCCCCchhHHHHHHHh
Q psy7140 314 -LPLNIEC--FMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPV-NAI-H-SIEIVGGSSRIPAFKNVIESV 387 (1304)
Q Consensus 314 -~~~~i~~--~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~sr~p~v~~~l~~~ 387 (1304)
..+.+.. ...+......|++++|.+++.+.++++.+.+.+.|+...... .++ + .|+|+||+|++|.+++.|++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~ 302 (333)
T TIGR00904 223 PRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKE 302 (333)
T ss_pred ccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHH
Confidence 1122111 122344567899999999999999999999999999876432 234 3 699999999999999999999
Q ss_pred cCCCCCCCCCchhHHHHHHHHHhhH
Q psy7140 388 FHKPPSTTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 388 f~~~~~~~~np~eaVa~Gaa~~aa~ 412 (1304)
|+.++....||+++||.|||+++..
T Consensus 303 ~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 303 TGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999754
No 47
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.1e-32 Score=317.54 Aligned_cols=308 Identities=19% Similarity=0.278 Sum_probs=228.0
Q ss_pred eEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCC-c--eEEcHhHHhhhhcCCCcchhhhhHhcCCCCCCh
Q psy7140 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-N--RILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDP 637 (1304)
Q Consensus 561 ~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~ 637 (1304)
..+||||||++++++.... +. ++ .+||+|+|... + .++|.+|..+..+.|.++... +
T Consensus 6 ~~igIDlGt~~~~i~~~~~-~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~--------- 65 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGK-GI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--R--------- 65 (334)
T ss_pred ceeEEEcCcceEEEEECCC-cE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--e---------
Confidence 3599999999999854322 22 33 38999999754 3 489999998766666543221 0
Q ss_pred hHHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHH
Q psy7140 638 FVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLT 717 (1304)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~ 717 (1304)
|. .+|.+ ... +.+..+++++........ .....+|+|||++|++.||+++++
T Consensus 66 ---------pi-----~~G~i------------~d~-~~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 66 ---------PM-----KDGVI------------ADF-DVTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred ---------cC-----CCCee------------cCH-HHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHH
Confidence 11 11111 011 222334444333322221 112489999999999999999999
Q ss_pred HHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHH
Q psy7140 718 AASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDK 797 (1304)
Q Consensus 718 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~ 797 (1304)
|++.||++.+.+++||+|||++|+... +.+..++|||+||||||++++++.+. ...++..+||++||+
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~-------~~~~~~lvvDiGggttdvs~v~~~~~-----~~~~~~~lGG~~id~ 185 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPV-------TEPTGSMVVDIGGGTTEVAVISLGGI-----VYSKSVRVGGDKFDE 185 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCcc-------cCCCeEEEEEeCCCeEEEEEEecCCe-----EeeCCcCChHHHHHH
Confidence 999999999999999999999998632 34567899999999999999987642 234566899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCc-----eeeeEEeeecCCcceEEEecHHHHHHHHHHH
Q psy7140 798 ILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN-----KLPLNIECFMDDKDVHAELKRNDLETLCEHI 872 (1304)
Q Consensus 798 ~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~-----~~~~~ie~l~~~~d~~~~itr~efe~l~~~~ 872 (1304)
.|.+++.++| +.... ...||++|+.++.... ...+..+.+..+.+..++|+|++|++++.+.
T Consensus 186 ~l~~~l~~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~ 252 (334)
T PRK13927 186 AIINYVRRNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEP 252 (334)
T ss_pred HHHHHHHHHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHH
Confidence 9999998665 22211 2468999999985321 1222222334566678899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCC--Ccee-EEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhH
Q psy7140 873 FGRIEICLNKCIAESKLPV--NAIH-SIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 873 ~~~i~~~i~~~l~~~~~~~--~~I~-~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ 941 (1304)
++++.+.|.++|+.++... +.++ .|+|+||+|++|.+++.|++.|+.++....||+++||+|||+++..
T Consensus 253 ~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 253 LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 9999999999999886432 2344 5999999999999999999999999999999999999999999875
No 48
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=9.1e-32 Score=312.67 Aligned_cols=307 Identities=19% Similarity=0.266 Sum_probs=225.2
Q ss_pred EEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCC-----c--eEEcHhHHhhhhcCCCcchhhhhHhcCCCCC
Q psy7140 563 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-----N--RILGVAAKNQTVTNVKNTIFGFKRLLGRTYD 635 (1304)
Q Consensus 563 vGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~ 635 (1304)
+||||||++|++++...| .++ ..||+|+|.++ + ..+|.+|.....+.|.+.-. ++-+.
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~pi~---- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IRPMK---- 69 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--EecCC----
Confidence 999999999998875433 222 38999999743 3 66999998765554544321 11111
Q ss_pred ChhHHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHH
Q psy7140 636 DPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKAL 715 (1304)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l 715 (1304)
+|.+ .++ -..++++..++..+.+. .+.....+|+|||++|+..||+++
T Consensus 70 -------------------~G~i---~d~------~~~~~~~~~~l~~~~~~----~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 70 -------------------DGVI---ADF------EVTEKMIKYFIKQVHSR----KSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred -------------------CCEE---EcH------HHHHHHHHHHHHHHhcc----cccCCCcEEEEeCCCCCHHHHHHH
Confidence 1111 000 01234444444433322 122223899999999999999999
Q ss_pred HHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHH
Q psy7140 716 LTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNI 795 (1304)
Q Consensus 716 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~ 795 (1304)
++|++.||++.+.+++||+|||++|+... +.+..++|||+||||||++++++.+ ....++.++||++|
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~-------~~~~~~lVvDiG~gttdvs~v~~~~-----~~~~~~~~lGG~di 185 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPV-------EEPTGSMVVDIGGGTTEVAVISLGG-----IVVSRSIRVGGDEF 185 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCcc-------cCCceEEEEEcCCCeEEEEEEEeCC-----EEecCCccchHHHH
Confidence 99999999999999999999999997632 3456799999999999999998764 22345668999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCce----eeeEEee--ecCCcceEEEecHHHHHHHH
Q psy7140 796 DKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNK----LPLNIEC--FMDDKDVHAELKRNDLETLC 869 (1304)
Q Consensus 796 D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~----~~~~ie~--l~~~~d~~~~itr~efe~l~ 869 (1304)
|+.|++++..+|. .... +..||++|+.++..... ..+.+.. ...+......|++++|.+++
T Consensus 186 d~~l~~~l~~~~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i 252 (333)
T TIGR00904 186 DEAIINYIRRTYN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREAL 252 (333)
T ss_pred HHHHHHHHHHHhc----ccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHH
Confidence 9999999986652 2211 35799999999753211 1222211 12234456789999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC-Cce-e-EEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhH
Q psy7140 870 EHIFGRIEICLNKCIAESKLPV-NAI-H-SIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 870 ~~~~~~i~~~i~~~l~~~~~~~-~~I-~-~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ 941 (1304)
.+.++++.+.+.++|+.++... .++ + .|+|+||+|++|.+++.|++.||.++....||+++||.||++++..
T Consensus 253 ~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 253 QEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999999999999877542 244 3 6999999999999999999999999999999999999999998654
No 49
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=8.5e-32 Score=314.47 Aligned_cols=309 Identities=19% Similarity=0.264 Sum_probs=230.0
Q ss_pred EEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCC---ceEEcHhHHHhhhhCCCcccccchhhcCCCCCChhH
Q psy7140 4 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK---NRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFV 80 (1304)
Q Consensus 4 iGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~---~~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~~ 80 (1304)
+||||||++++++++.++ .++ .+||+|+|.+. ..++|++|+....+.|.+.-. +
T Consensus 11 vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~------------ 67 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--I------------ 67 (335)
T ss_pred eEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--e------------
Confidence 899999999999886332 233 25999999752 357999998776555544211 1
Q ss_pred HHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHHH
Q psy7140 81 QEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISE 160 (1304)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a~ 160 (1304)
.|+. +| . +..-+.+..+++++.+.+.
T Consensus 68 ------~pi~-----------------------------------~G------------~-i~d~~~~e~ll~~~~~~~~ 93 (335)
T PRK13930 68 ------RPLK-----------------------------------DG------------V-IADFEATEAMLRYFIKKAR 93 (335)
T ss_pred ------ecCC-----------------------------------CC------------e-EcCHHHHHHHHHHHHHHHh
Confidence 0110 11 1 1112346667777766554
Q ss_pred hhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEE
Q psy7140 161 NEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240 (1304)
Q Consensus 161 ~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dv 240 (1304)
.........+|+|+|++|+..+|+++.+|++.+|++.+.+++||+|||++|+.... +...++|||+||||||+
T Consensus 94 ~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~lv~ep~AAa~a~g~~~~-------~~~~~lVvDiG~gttdv 166 (335)
T PRK13930 94 GRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLPVT-------EPVGNMVVDIGGGTTEV 166 (335)
T ss_pred hcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEEecccHHHHHHhcCCCcC-------CCCceEEEEeCCCeEEE
Confidence 43344467899999999999999999999999999999999999999999975432 23457899999999999
Q ss_pred EEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCce---eeEE
Q psy7140 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNK---LPLN 317 (1304)
Q Consensus 241 sv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~---~~~~ 317 (1304)
+++.... + + ..+...+||++||+.|.+++.+++ +.+.. ...||++|+.++..... ..+.
T Consensus 167 s~v~~g~--~--~-~~~~~~lGG~~id~~l~~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~ 228 (335)
T PRK13930 167 AVISLGG--I--V-YSESIRVAGDEMDEAIVQYVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESME 228 (335)
T ss_pred EEEEeCC--E--E-eecCcCchhHHHHHHHHHHHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEE
Confidence 9987643 2 1 245789999999999999987653 33211 25789999999754321 1122
Q ss_pred Ee--eecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCcccE-EEEEcCCCCchhHHHHHHHhcCCCC
Q psy7140 318 IE--CFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP--VNAIHS-IEIVGGSSRIPAFKNVIESVFHKPP 392 (1304)
Q Consensus 318 i~--~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~-ViLvGG~sr~p~v~~~l~~~f~~~~ 392 (1304)
+. ....+.+..+.|++++|++++.+.++++.+.+.++|+.+... .+.++. |+|+||+|++|.+++.|++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v 308 (335)
T PRK13930 229 VRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPV 308 (335)
T ss_pred EECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCc
Confidence 22 123345568899999999999999999999999999976532 233454 9999999999999999999999888
Q ss_pred CCCCCchhHHHHHHHHHhhHhc
Q psy7140 393 STTLNQDEAVSRGCALQCAILS 414 (1304)
Q Consensus 393 ~~~~np~eaVa~Gaa~~aa~ls 414 (1304)
....+|+++||+|||+++....
T Consensus 309 ~~~~~p~~ava~Ga~~~~~~~~ 330 (335)
T PRK13930 309 HIAEDPLTCVARGTGKALENLD 330 (335)
T ss_pred eecCCHHHHHHHHHHHHHhChH
Confidence 8888999999999999986543
No 50
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.2e-30 Score=304.73 Aligned_cols=309 Identities=20% Similarity=0.267 Sum_probs=230.5
Q ss_pred EEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCC---ceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChh
Q psy7140 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK---NRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 638 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~ 638 (1304)
.+||||||+++++++...+ + ++ .+||+|+|.+. ..++|.+|.....+.|.+.-. +
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~----------- 67 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--I----------- 67 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--e-----------
Confidence 4999999999999886332 2 22 26999999752 358999998765544433211 0
Q ss_pred HHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHH
Q psy7140 639 VQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTA 718 (1304)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~A 718 (1304)
.|+ .+|.+ .. -+.+..+++++.+.+..........+|+|+|++|+..+|+++.+|
T Consensus 68 -------~pi-----~~G~i------------~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 68 -------RPL-----KDGVI------------AD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred -------ecC-----CCCeE------------cC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 111 11211 11 234566666666544433334467899999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHH
Q psy7140 719 ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKI 798 (1304)
Q Consensus 719 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~ 798 (1304)
++.+|++.+.+++||+|||++|+... ..+..++|||+||||||++++.... ....+..++||.+||+.
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~-------~~~~~~lVvDiG~gttdvs~v~~g~-----~~~~~~~~lGG~~id~~ 190 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPV-------TEPVGNMVVDIGGGTTEVAVISLGG-----IVYSESIRVAGDEMDEA 190 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCc-------CCCCceEEEEeCCCeEEEEEEEeCC-----EEeecCcCchhHHHHHH
Confidence 99999999999999999999997632 2345679999999999999997654 12345779999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCce---eeeEEe--eecCCcceEEEecHHHHHHHHHHHH
Q psy7140 799 LAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNK---LPLNIE--CFMDDKDVHAELKRNDLETLCEHIF 873 (1304)
Q Consensus 799 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~---~~~~ie--~l~~~~d~~~~itr~efe~l~~~~~ 873 (1304)
|.+++..++ +.+.. ...||++|+.++..... ..+.+. ....+.+....|+|++|++++.+.+
T Consensus 191 l~~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~ 257 (335)
T PRK13930 191 IVQYVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPL 257 (335)
T ss_pred HHHHHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHH
Confidence 999998765 22211 25789999999863211 112222 2234455678999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC--CceeE-EEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHh
Q psy7140 874 GRIEICLNKCIAESKLPV--NAIHS-IEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAIL 942 (1304)
Q Consensus 874 ~~i~~~i~~~l~~~~~~~--~~I~~-V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~l 942 (1304)
+++.+.+.++|+.+.... +.++. |+|+||+|++|.++++|++.|+.++....+|+++||+|||+.+...
T Consensus 258 ~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 258 QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 999999999999875332 33454 9999999999999999999999998888999999999999998643
No 51
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.96 E-value=2.7e-28 Score=273.76 Aligned_cols=305 Identities=23% Similarity=0.318 Sum_probs=215.0
Q ss_pred EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcCC-c--eEEcHhHHHhhhhCCCcccccchhhcCCCCCChh
Q psy7140 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-N--RILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 79 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~~-~--~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~~~ 79 (1304)
-+||||||+|+.|+. .++- ++.+ .||+|+++.+ + ..+|++|+....+.|.+...-
T Consensus 3 ~igIDLGT~~t~i~~--~~~G-iv~~------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~------------- 60 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV--KGKG-IVLN------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVV------------- 60 (326)
T ss_dssp EEEEEE-SSEEEEEE--TTTE-EEEE------EES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-------------
T ss_pred ceEEecCcccEEEEE--CCCC-EEEe------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEE-------------
Confidence 489999999998754 3322 2222 3999999865 2 338999987766655442110
Q ss_pred HHHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHHHH
Q psy7140 80 VQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDIS 159 (1304)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~~a 159 (1304)
.|. .+..+.--++...+|+++.+.+
T Consensus 61 -------~Pl------------------------------------------------~~GvI~D~~~~~~~l~~~l~k~ 85 (326)
T PF06723_consen 61 -------RPL------------------------------------------------KDGVIADYEAAEEMLRYFLKKA 85 (326)
T ss_dssp --------SE------------------------------------------------ETTEESSHHHHHHHHHHHHHHH
T ss_pred -------ccc------------------------------------------------cCCcccCHHHHHHHHHHHHHHh
Confidence 010 1122333467777888887776
Q ss_pred HhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEE
Q psy7140 160 ENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQ 239 (1304)
Q Consensus 160 ~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~d 239 (1304)
.......-..++++||+.-++-+|+++.+|+..||.+.+.|+.||.|||+..++.-. .+...||+|+||||||
T Consensus 86 ~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~-------~~~g~miVDIG~GtTd 158 (326)
T PF06723_consen 86 LGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIF-------EPRGSMIVDIGGGTTD 158 (326)
T ss_dssp HTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TT-------SSS-EEEEEE-SS-EE
T ss_pred ccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCC-------CCCceEEEEECCCeEE
Confidence 653223345799999999999999999999999999999999999999999987542 4567899999999999
Q ss_pred EEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCc---eeeE
Q psy7140 240 VCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPL 316 (1304)
Q Consensus 240 vsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~~~~ 316 (1304)
++++.. |.+.... ....||++||++|.+|+.++| ++.+. ...||++|+.+++... ....
T Consensus 159 iavisl--ggiv~s~---si~~gG~~~DeaI~~~ir~~y----~l~Ig---------~~tAE~iK~~~g~~~~~~~~~~~ 220 (326)
T PF06723_consen 159 IAVISL--GGIVASR---SIRIGGDDIDEAIIRYIREKY----NLLIG---------ERTAEKIKIEIGSASPPEEEESM 220 (326)
T ss_dssp EEEEET--TEEEEEE---EES-SHHHHHHHHHHHHHHHH----SEE-----------HHHHHHHHHHH-BSS--HHHHEE
T ss_pred EEEEEC--CCEEEEE---EEEecCcchhHHHHHHHHHhh----CcccC---------HHHHHHHHHhcceeeccCCCceE
Confidence 999864 5443333 348999999999999997665 33222 2568999999876422 1223
Q ss_pred EEe--eecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC---cc--cEEEEEcCCCCchhHHHHHHHhcC
Q psy7140 317 NIE--CFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVN---AI--HSIEIVGGSSRIPAFKNVIESVFH 389 (1304)
Q Consensus 317 ~i~--~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~---~i--~~ViLvGG~sr~p~v~~~l~~~f~ 389 (1304)
.+. .+..|....+.|+.+++.+.|.+.+.+|.+.++++|++. +|+ || ++|+|+||+|+++.+.+.|++.++
T Consensus 221 ~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~--pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~ 298 (326)
T PF06723_consen 221 EVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKT--PPELAADILENGIVLTGGGALLRGLDEYISEETG 298 (326)
T ss_dssp EEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS
T ss_pred EEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHC
Confidence 333 356788899999999999999999999999999999864 333 22 579999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHhh
Q psy7140 390 KPPSTTLNQDEAVSRGCALQCA 411 (1304)
Q Consensus 390 ~~~~~~~np~eaVa~Gaa~~aa 411 (1304)
.++...-||..+||.||.....
T Consensus 299 ~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 299 VPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp S-EEE-SSTTTHHHHHHHHTTC
T ss_pred CCEEEcCCHHHHHHHHHHHHHh
Confidence 9999999999999999987654
No 52
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=8.5e-28 Score=262.81 Aligned_cols=202 Identities=21% Similarity=0.313 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCC
Q psy7140 143 SPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDD 222 (1304)
Q Consensus 143 ~~~el~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~ 222 (1304)
.--+..+++|+++++.++.++|.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+..
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~-------- 108 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK-------- 108 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC--------
Confidence 335678999999999999999999999999999999999999999999999999999999999999998531
Q ss_pred CCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q psy7140 223 QNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEK 302 (1304)
Q Consensus 223 ~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 302 (1304)
..+|+|+||||||+++++ .|.+.. .++.++||++||+.|.+.+ +++ +.+||+
T Consensus 109 ----~~~vvDiGggtt~i~i~~--~G~i~~---~~~~~~GG~~it~~Ia~~~--------~i~-----------~~~AE~ 160 (239)
T TIGR02529 109 ----NGAVVDVGGGTTGISILK--KGKVIY---SADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEE 160 (239)
T ss_pred ----CcEEEEeCCCcEEEEEEE--CCeEEE---EEeeecchHHHHHHHHHHh--------CCC-----------HHHHHH
Confidence 148999999999999965 454332 3477899999999887554 222 267899
Q ss_pred hhhccccCCceeeEEEeeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHH
Q psy7140 303 LKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKN 382 (1304)
Q Consensus 303 ~K~~Ls~~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~ 382 (1304)
+|+.++. .+++.++++++++++.+.+++.|++. .++.|+|+||+|++|.+++
T Consensus 161 ~K~~~~~-----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e 212 (239)
T TIGR02529 161 YKRGHKD-----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFAD 212 (239)
T ss_pred HHHhcCC-----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHH
Confidence 9986541 35677899999999999999999864 3578999999999999999
Q ss_pred HHHHhcCCCCCCCCCchhHHHHHHHH
Q psy7140 383 VIESVFHKPPSTTLNQDEAVSRGCAL 408 (1304)
Q Consensus 383 ~l~~~f~~~~~~~~np~eaVa~Gaa~ 408 (1304)
.+++.|+.++..+.||++++|.|||+
T Consensus 213 ~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 213 VFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHhCCCcccCCCCCeehhheeec
Confidence 99999999999999999999999986
No 53
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.96 E-value=9.8e-28 Score=269.27 Aligned_cols=307 Identities=22% Similarity=0.299 Sum_probs=213.7
Q ss_pred EEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCC---ceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChh
Q psy7140 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK---NRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPF 638 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~ 638 (1304)
-+||||||+++.|+....| ++.+ .||+|++... -..+|.+|....-+.|.+. .
T Consensus 3 ~igIDLGT~~t~i~~~~~G---iv~~------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG---IVLN------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------E 58 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE---EEEE------EES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------E
T ss_pred ceEEecCcccEEEEECCCC---EEEe------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------E
Confidence 4899999999988543333 3333 3999999865 2348999976444333221 1
Q ss_pred HHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHH
Q psy7140 639 VQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTA 718 (1304)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~A 718 (1304)
+. .|. .+|. +.=-++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|
T Consensus 59 ~~-----~Pl-----~~Gv-------------I~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 59 VV-----RPL-----KDGV-------------IADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp EE------SE-----ETTE-------------ESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred EE-----ccc-----cCCc-------------ccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 10 111 1221 111356667777776666553223455899999999999999999999
Q ss_pred HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHH
Q psy7140 719 ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKI 798 (1304)
Q Consensus 719 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~ 798 (1304)
+..||.+.+.|+.||.|||+..++. ...+...||+|+||||||++++...+ +.. ......||++||+.
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~-------i~~~~g~miVDIG~GtTdiavislgg--iv~---s~si~~gG~~~Dea 183 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLD-------IFEPRGSMIVDIGGGTTDIAVISLGG--IVA---SRSIRIGGDDIDEA 183 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT---------TTSSS-EEEEEE-SS-EEEEEEETTE--EEE---EEEES-SHHHHHHH
T ss_pred HHHcCCCEEEEecchHHHHhcCCCC-------CCCCCceEEEEECCCeEEEEEEECCC--EEE---EEEEEecCcchhHH
Confidence 9999999999999999999998873 24577899999999999999986433 222 22347899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCc---eeeeEEe--eecCCcceEEEecHHHHHHHHHHHH
Q psy7140 799 LAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPLNIE--CFMDDKDVHAELKRNDLETLCEHIF 873 (1304)
Q Consensus 799 l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~---~~~~~ie--~l~~~~d~~~~itr~efe~l~~~~~ 873 (1304)
|.+|+.++|. +.+. .+.||++|+.++.... ...+.+. .+..+..-++.|+-+++.+.|.+.+
T Consensus 184 I~~~ir~~y~----l~Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~ 250 (326)
T PF06723_consen 184 IIRYIREKYN----LLIG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPV 250 (326)
T ss_dssp HHHHHHHHHS----EE-----------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHhhC----cccC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHH
Confidence 9999988872 2221 2569999999976321 1234443 3467788899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-Cce--eEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhh
Q psy7140 874 GRIEICLNKCIAESKLPV-NAI--HSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 874 ~~i~~~i~~~l~~~~~~~-~~I--~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa 940 (1304)
.+|.+.++++|+...... .|| ++|+|+||+++++.+.+.|++.+|.++....||..+||.||.....
T Consensus 251 ~~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 251 DQIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999999999764332 233 5799999999999999999999999999999999999999987654
No 54
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.95 E-value=2.1e-25 Score=237.91 Aligned_cols=310 Identities=20% Similarity=0.268 Sum_probs=233.2
Q ss_pred EEEEEcCcccEEEEEEeCCceEEEeCCCCCcccceEEEEcC--C-c--eEEcHhHHHhhhhCCCcccccchhhcCCCCCC
Q psy7140 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSD--K-N--RILGVAAKNQTVTNVKNTIFGFKRLLGRTYDD 77 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~g~~~ii~~~~g~r~~Ps~V~~~~--~-~--~~vG~~A~~~~~~~~~~~i~~~k~~lg~~~~~ 77 (1304)
.+||||||.|+.|..- |+- ++++ -||+|++.. + . ..+|.+|+...-+.|.|...-
T Consensus 8 diGIDLGTanTlV~~k--~kg-IVl~------ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~ai----------- 67 (342)
T COG1077 8 DIGIDLGTANTLVYVK--GKG-IVLN------EPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAI----------- 67 (342)
T ss_pred cceeeecccceEEEEc--Cce-EEec------CceEEEEeecCCCceEEEehHHHHHHhccCCCCceEE-----------
Confidence 5899999999998764 322 4443 399999987 2 2 237999977665555442111
Q ss_pred hhHHHHhhcCCccccccCCCCccccccCCCchhhhhhccCccccccCCCCceeEEEEecCCceEeCHHHHHHHHHHHHHH
Q psy7140 78 PFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKD 157 (1304)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~el~~~~L~~lk~ 157 (1304)
..-++..+.--++...+|+|+.+
T Consensus 68 ---------------------------------------------------------RPmkdGVIAd~~~te~ml~~fik 90 (342)
T COG1077 68 ---------------------------------------------------------RPMKDGVIADFEVTELMLKYFIK 90 (342)
T ss_pred ---------------------------------------------------------eecCCcEeecHHHHHHHHHHHHH
Confidence 00122233445677788888888
Q ss_pred HHHhhhc-CccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCC
Q psy7140 158 ISENEIQ-NKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYS 236 (1304)
Q Consensus 158 ~a~~~~~-~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~Ggg 236 (1304)
.....-+ ....+++++||..-++-+|+++++|++.||.+.+.++.||.|||+..++.-. .+..-+|||+|||
T Consensus 91 ~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa~~V~lieEp~aAAIGaglpi~-------ep~G~mvvDIGgG 163 (342)
T COG1077 91 KVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIM-------EPTGSMVVDIGGG 163 (342)
T ss_pred HhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccCceEEEeccHHHHHhcCCCccc-------CCCCCEEEEeCCC
Confidence 7764333 3444799999999999999999999999999999999999999998876432 2333478999999
Q ss_pred eEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCc----
Q psy7140 237 ALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---- 312 (1304)
Q Consensus 237 T~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---- 312 (1304)
|||++++.+.+ +-... ...+||+.||+.|.+|+.++| ++.+.. +.+|++|........
T Consensus 164 TTevaVISlgg--iv~~~---Sirv~GD~~De~Ii~yvr~~~----nl~IGe---------~taE~iK~eiG~a~~~~~~ 225 (342)
T COG1077 164 TTEVAVISLGG--IVSSS---SVRVGGDKMDEAIIVYVRKKY----NLLIGE---------RTAEKIKIEIGSAYPEEED 225 (342)
T ss_pred ceeEEEEEecC--EEEEe---eEEEecchhhHHHHHHHHHHh----CeeecH---------HHHHHHHHHhcccccccCC
Confidence 99999998843 22222 347999999999999987554 443332 347888887654321
Q ss_pred ---eeeEEEeeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcccE-EEEEcCCCCchhHHHHHHH
Q psy7140 313 ---KLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESK--LPVNAIHS-IEIVGGSSRIPAFKNVIES 386 (1304)
Q Consensus 313 ---~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~--~~~~~i~~-ViLvGG~sr~p~v~~~l~~ 386 (1304)
...+.-..+..|..-.++++.++..+.+++.+++|.+.++..|++.. +..+=++. ++|+||+|.+..+.+.|++
T Consensus 226 ~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~ 305 (342)
T COG1077 226 EELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSE 305 (342)
T ss_pred ccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHh
Confidence 22334445566778889999999999999999999999999999753 23333454 9999999999999999999
Q ss_pred hcCCCCCCCCCchhHHHHHHHHHhhHhc
Q psy7140 387 VFHKPPSTTLNQDEAVSRGCALQCAILS 414 (1304)
Q Consensus 387 ~f~~~~~~~~np~eaVa~Gaa~~aa~ls 414 (1304)
..+.++....+|-.|||+|+......+.
T Consensus 306 et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 306 ETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred ccCCeEEECCChHHHHHhccchhhhhhH
Confidence 9999999999999999999998877654
No 55
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.94 E-value=2.1e-26 Score=251.95 Aligned_cols=200 Identities=21% Similarity=0.318 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCC
Q psy7140 674 EQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQN 753 (1304)
Q Consensus 674 eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 753 (1304)
-+..+++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---------- 108 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---------- 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----------
Confidence 5678999999999999889999999999999999999999999999999999999999999999998641
Q ss_pred CcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q psy7140 754 PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLK 833 (1304)
Q Consensus 754 ~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K 833 (1304)
..+|+|+||||||+++++ .+.+. . ..+..+||++||+.|++.+. ++ +.+||++|
T Consensus 109 --~~~vvDiGggtt~i~i~~--~G~i~--~-~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K 162 (239)
T TIGR02529 109 --NGAVVDVGGGTTGISILK--KGKVI--Y-SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYK 162 (239)
T ss_pred --CcEEEEeCCCcEEEEEEE--CCeEE--E-EEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHH
Confidence 258999999999999965 44332 2 34678999999998876542 22 26799999
Q ss_pred HHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHH
Q psy7140 834 KQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVI 913 (1304)
Q Consensus 834 ~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l 913 (1304)
+.++. .+++.+++.++++++...+++.|++.+ ++.|+|+||+|++|.+++.|
T Consensus 163 ~~~~~-----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~~v~LtGG~a~ipgl~e~l 214 (239)
T TIGR02529 163 RGHKD-----------------------EEEIFPVVKPVYQKMASIVKRHIEGQG-----VKDLYLVGGACSFSGFADVF 214 (239)
T ss_pred HhcCC-----------------------HHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEEEEECchhcchhHHHHH
Confidence 87542 355778999999999999999998653 46899999999999999999
Q ss_pred HHHcCCCCCCCCCchhHHHhHHHH
Q psy7140 914 ESVFHKPPSTTLNQDEAVSRGCAL 937 (1304)
Q Consensus 914 ~~~fg~~~~~~~n~~eava~Gaa~ 937 (1304)
++.||.++..+.||++++|.|||+
T Consensus 215 ~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 215 EKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHhCCCcccCCCCCeehhheeec
Confidence 999999999999999999999986
No 56
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.94 E-value=3.5e-25 Score=236.16 Aligned_cols=311 Identities=21% Similarity=0.302 Sum_probs=236.7
Q ss_pred eEEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeC--C-c--eEEcHhHHhhhhcCCCcchhhhhHhcCCCCC
Q psy7140 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSD--K-N--RILGVAAKNQTVTNVKNTIFGFKRLLGRTYD 635 (1304)
Q Consensus 561 ~vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~--~-~--~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~ 635 (1304)
..+|||+||.|+.|.....| +++|+ ||+|++.. + . ..+|.+|+. ++|+...
T Consensus 7 ~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~---------------MlGrTP~ 62 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQ---------------MLGRTPG 62 (342)
T ss_pred ccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHH---------------HhccCCC
Confidence 36999999999998776333 55554 99999976 2 2 347888754 6676644
Q ss_pred ChhHHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhc-cccceEEEeecCCCCHHHHHH
Q psy7140 636 DPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQ-NKVHDCVLAVPSYFTNNERKA 714 (1304)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~-~~~~~~VitVP~~f~~~qr~~ 714 (1304)
+-.. +.+..||.+ .--+++..+|+|+.+......+ .....++++||..-++.+|+|
T Consensus 63 ni~a----------iRPmkdGVI-------------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 63 NIVA----------IRPMKDGVI-------------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred CceE----------EeecCCcEe-------------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 4211 112223322 2245666777777776654333 344579999999999999999
Q ss_pred HHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHH
Q psy7140 715 LLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRN 794 (1304)
Q Consensus 715 l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~ 794 (1304)
+++|++.||.+.+.++.||.|||+..++. ...+..-+|||+||||||++++.+.+ +.+.....+||+.
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGaglp-------i~ep~G~mvvDIGgGTTevaVISlgg-----iv~~~Sirv~GD~ 187 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGLP-------IMEPTGSMVVDIGGGTTEVAVISLGG-----IVSSSSVRVGGDK 187 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCCc-------ccCCCCCEEEEeCCCceeEEEEEecC-----EEEEeeEEEecch
Confidence 99999999999999999999999988763 24456788999999999999999876 3333445799999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCC-------ceeeeEEeeecCCcceEEEecHHHHHH
Q psy7140 795 IDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANS-------NKLPLNIECFMDDKDVHAELKRNDLET 867 (1304)
Q Consensus 795 ~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~-------~~~~~~ie~l~~~~d~~~~itr~efe~ 867 (1304)
||+.+.+|+.++| ++-+-. +.||++|+...... .+..+.-..+..+..-.++++-++..+
T Consensus 188 ~De~Ii~yvr~~~----nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~e 254 (342)
T COG1077 188 MDEAIIVYVRKKY----NLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAE 254 (342)
T ss_pred hhHHHHHHHHHHh----CeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHH
Confidence 9999999998776 322222 45899999886421 112333344566777788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC--CCceeE-EEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhc
Q psy7140 868 LCEHIFGRIEICLNKCIAESKLP--VNAIHS-IEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILS 943 (1304)
Q Consensus 868 l~~~~~~~i~~~i~~~l~~~~~~--~~~I~~-V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls 943 (1304)
.+++.+++|.+.++..|+...-. .+-++. ++|+||++.+..+.+.|++..+.++....+|-.|||.|+....+.+.
T Consensus 255 al~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 255 ALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999999999986432 233455 99999999999999999999999999999999999999998877654
No 57
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.93 E-value=2e-24 Score=240.64 Aligned_cols=202 Identities=23% Similarity=0.365 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCC
Q psy7140 145 EQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQN 224 (1304)
Q Consensus 145 ~el~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 224 (1304)
.+.....|+++++.++.++|.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|...
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 5567778999999999999988999999999999999999999999999999999999999999987531
Q ss_pred CcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhh
Q psy7140 225 PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLK 304 (1304)
Q Consensus 225 ~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 304 (1304)
..+++|+||||||+++++ ++.+.. .++..+||++||+.|++++. ++ +.+||++|
T Consensus 136 --~~~vvDIGggtt~i~v~~--~g~~~~---~~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK 189 (267)
T PRK15080 136 --NGAVVDIGGGTTGISILK--DGKVVY---SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYK 189 (267)
T ss_pred --CcEEEEeCCCcEEEEEEE--CCeEEE---EecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHH
Confidence 148999999999999964 454432 24779999999999997752 21 36789999
Q ss_pred hccccCCceeeEEEeeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHH
Q psy7140 305 KQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVI 384 (1304)
Q Consensus 305 ~~Ls~~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l 384 (1304)
+.++ +++++.++++++++++.+.+++.++.. +++.|+|+||+|++|.+++.+
T Consensus 190 ~~~~-----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l 241 (267)
T PRK15080 190 RDPK-----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVF 241 (267)
T ss_pred hccC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHH
Confidence 8653 257789999999999999999999864 568999999999999999999
Q ss_pred HHhcCCCCCCCCCchhHHHHHHHHHh
Q psy7140 385 ESVFHKPPSTTLNQDEAVSRGCALQC 410 (1304)
Q Consensus 385 ~~~f~~~~~~~~np~eaVa~Gaa~~a 410 (1304)
++.|+.++....||+.++|.|||+||
T Consensus 242 ~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 242 EKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHhCCCcccCCCchHHHHHHHHhhC
Confidence 99999999899999999999999875
No 58
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.93 E-value=1.9e-24 Score=240.88 Aligned_cols=202 Identities=23% Similarity=0.365 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCC
Q psy7140 674 EQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQN 753 (1304)
Q Consensus 674 eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 753 (1304)
-+.....|+++++.++.++|.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|.+.
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4556778888889999888888999999999999999999999999999999999999999999987531
Q ss_pred CcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Q psy7140 754 PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLK 833 (1304)
Q Consensus 754 ~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K 833 (1304)
..+++|+|||||++++++ ++.+. ..++..+||++||+.|++++. ++ +.+||++|
T Consensus 136 --~~~vvDIGggtt~i~v~~--~g~~~---~~~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK 189 (267)
T PRK15080 136 --NGAVVDIGGGTTGISILK--DGKVV---YSADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYK 189 (267)
T ss_pred --CcEEEEeCCCcEEEEEEE--CCeEE---EEecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHH
Confidence 158999999999999964 44432 234779999999999988762 11 36789999
Q ss_pred HHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHH
Q psy7140 834 KQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVI 913 (1304)
Q Consensus 834 ~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l 913 (1304)
+.++ +++++.++++++++++.+.+++.++.. +++.|+|+||+|++|.+++.+
T Consensus 190 ~~~~-----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l 241 (267)
T PRK15080 190 RDPK-----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVF 241 (267)
T ss_pred hccC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHH
Confidence 7653 257789999999999999999999864 568999999999999999999
Q ss_pred HHHcCCCCCCCCCchhHHHhHHHHHh
Q psy7140 914 ESVFHKPPSTTLNQDEAVSRGCALQC 939 (1304)
Q Consensus 914 ~~~fg~~~~~~~n~~eava~Gaa~~a 939 (1304)
++.||.++....||+.++|.|||++|
T Consensus 242 ~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 242 EKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHhCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999999999875
No 59
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.86 E-value=3.3e-20 Score=219.09 Aligned_cols=195 Identities=21% Similarity=0.289 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCC
Q psy7140 710 NERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSE 789 (1304)
Q Consensus 710 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~ 789 (1304)
...+.+.+|++.||+++..++.||.|+|++|.... ..+..++++|+||||||++++. .+.+.. .....
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-------~~~~~~~vvDiG~gtt~i~i~~--~g~~~~---~~~i~ 225 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-------EKELGVCLIDIGGGTTDIAVYT--GGSIRY---TKVIP 225 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-------hhcCCEEEEEeCCCcEEEEEEE--CCEEEE---Eeeec
Confidence 34677888999999999999999999999885321 3456799999999999999985 344322 33458
Q ss_pred CCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCC-----ceeeeEEeeecCCcceEEEecHHH
Q psy7140 790 IGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANS-----NKLPLNIECFMDDKDVHAELKRND 864 (1304)
Q Consensus 790 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~-----~~~~~~ie~l~~~~d~~~~itr~e 864 (1304)
+||++||+.|.+.+.. .+.+||++|+.++... ....+.+... +.+....|+|++
T Consensus 226 ~GG~~it~~i~~~l~~-------------------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~is~~~ 284 (371)
T TIGR01174 226 IGGNHITKDIAKALRT-------------------PLEEAERIKIKYGCASIPLEGPDENIEIPSV--GERPPRSLSRKE 284 (371)
T ss_pred chHHHHHHHHHHHhCC-------------------CHHHHHHHHHHeeEecccCCCCCCEEEeccC--CCCCCeEEcHHH
Confidence 9999999998775421 2478999999998631 1233444433 346678999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCCCCCceeE-EEEecCCCCChhHHHHHHHHcCCCCCC------------CCCchhH
Q psy7140 865 LETLCEHIFGRIEICLN-KCIAESKLPVNAIHS-IEIVGGSSRIPAFKNVIESVFHKPPST------------TLNQDEA 930 (1304)
Q Consensus 865 fe~l~~~~~~~i~~~i~-~~l~~~~~~~~~I~~-V~LvGG~srip~v~~~l~~~fg~~~~~------------~~n~~ea 930 (1304)
|++++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|.+++.+++.||.++.. .-+|..+
T Consensus 285 l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~ 363 (371)
T TIGR01174 285 LAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYS 363 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHH
Confidence 99999999999999997 999998876 66776 999999999999999999999865321 1278889
Q ss_pred HHhHHHHH
Q psy7140 931 VSRGCALQ 938 (1304)
Q Consensus 931 va~Gaa~~ 938 (1304)
+|.|.++|
T Consensus 364 ~a~Gl~~~ 371 (371)
T TIGR01174 364 TAVGLLLY 371 (371)
T ss_pred HHHHHHhC
Confidence 99998764
No 60
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.86 E-value=5.4e-20 Score=217.23 Aligned_cols=195 Identities=20% Similarity=0.284 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCC
Q psy7140 181 NERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSE 260 (1304)
Q Consensus 181 ~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 260 (1304)
...+.+.+|++.||+++..++.||.|+|++|.... .....++|+|+||||||+++++ ++.+.. .....
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-------~~~~~~~vvDiG~gtt~i~i~~--~g~~~~---~~~i~ 225 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-------EKELGVCLIDIGGGTTDIAVYT--GGSIRY---TKVIP 225 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-------hhcCCEEEEEeCCCcEEEEEEE--CCEEEE---Eeeec
Confidence 44777888999999999999999999999885321 2345689999999999999975 454433 23458
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCC-----ceeeEEEeeecCCcceEEEEcHHH
Q psy7140 261 IGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANS-----NKLPLNIECFMDDKDVHAELKRND 335 (1304)
Q Consensus 261 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----~~~~~~i~~~~~~~~~~~~itr~~ 335 (1304)
+||++||+.|.+.+. ..+.+||++|+.++... ....+.++.. +.+....|+|++
T Consensus 226 ~GG~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~is~~~ 284 (371)
T TIGR01174 226 IGGNHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSV--GERPPRSLSRKE 284 (371)
T ss_pred chHHHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccC--CCCCCeEEcHHH
Confidence 999999999886531 12578999999998632 1223444333 345678999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhCCCCCCcccE-EEEEcCCCCchhHHHHHHHhcCCCCCC------------CCCchhH
Q psy7140 336 LETLCEHIFGRIEICLN-KCIAESKLPVNAIHS-IEIVGGSSRIPAFKNVIESVFHKPPST------------TLNQDEA 401 (1304)
Q Consensus 336 fe~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~sr~p~v~~~l~~~f~~~~~~------------~~np~ea 401 (1304)
|++++++.++++...++ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+.++.. .-+|..+
T Consensus 285 l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~ 363 (371)
T TIGR01174 285 LAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYS 363 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHH
Confidence 99999999999999997 999998876 66776 999999999999999999999855321 1278899
Q ss_pred HHHHHHHH
Q psy7140 402 VSRGCALQ 409 (1304)
Q Consensus 402 Va~Gaa~~ 409 (1304)
+|.|+++|
T Consensus 364 ~a~Gl~~~ 371 (371)
T TIGR01174 364 TAVGLLLY 371 (371)
T ss_pred HHHHHHhC
Confidence 99998875
No 61
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.84 E-value=5.4e-19 Score=210.71 Aligned_cols=197 Identities=18% Similarity=0.203 Sum_probs=148.4
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCC
Q psy7140 712 RKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIG 791 (1304)
Q Consensus 712 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lG 791 (1304)
.+.+.+|++.|||++..++.||.|+|.++... .+++..++++|+||||||+++++ +|.+. +....++|
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~-------~e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~G 235 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTE-------DERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYA 235 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcCh-------hhhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeech
Confidence 34456799999999999999999999988532 23467799999999999999986 44433 23345899
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccC-----CceeeeEEeeecCCcceEEEecHHHHH
Q psy7140 792 GRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSAN-----SNKLPLNIECFMDDKDVHAELKRNDLE 866 (1304)
Q Consensus 792 G~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~-----~~~~~~~ie~l~~~~d~~~~itr~efe 866 (1304)
|++|++.|+..+.- -+.+||++|+.+... .....+.+....... ...++|.+|.
T Consensus 236 G~~it~dIa~~l~i-------------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~ 294 (420)
T PRK09472 236 GNVVTSDIAYAFGT-------------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLA 294 (420)
T ss_pred HHHHHHHHHHHhCc-------------------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHH
Confidence 99999999865521 136899999876531 111234444332222 2489999999
Q ss_pred HHHHHHHHHHHHHHHH-------HHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCC------------CCCc
Q psy7140 867 TLCEHIFGRIEICLNK-------CIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPST------------TLNQ 927 (1304)
Q Consensus 867 ~l~~~~~~~i~~~i~~-------~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~------------~~n~ 927 (1304)
+++.+.++++.+.+++ .|..+++....++.|+|+||+|++|.|++.+++.|+.++.. ..+|
T Consensus 295 ~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P 374 (420)
T PRK09472 295 EVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEP 374 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCc
Confidence 9999977776666654 55677877778899999999999999999999999865421 2489
Q ss_pred hhHHHhHHHHHhhH
Q psy7140 928 DEAVSRGCALQCAI 941 (1304)
Q Consensus 928 ~eava~Gaa~~aa~ 941 (1304)
..++|.|+++++..
T Consensus 375 ~~ata~Gl~~~~~~ 388 (420)
T PRK09472 375 YYSTAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999763
No 62
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.83 E-value=3.9e-19 Score=211.89 Aligned_cols=196 Identities=17% Similarity=0.187 Sum_probs=147.8
Q ss_pred HHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcc
Q psy7140 183 RKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIG 262 (1304)
Q Consensus 183 r~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lG 262 (1304)
.+.+.+|++.||+++..++.||.|+|.++.... .++..++++|+||||||+++++ +|.+.... ..++|
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-------e~~~gv~vvDiGggtTdisv~~--~G~l~~~~---~i~~G 235 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTED-------ERELGVCVVDIGGGTMDIAVYT--GGALRHTK---VIPYA 235 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-------hhhcCeEEEEeCCCceEEEEEE--CCEEEEEe---eeech
Confidence 344567999999999999999999999885332 2456689999999999999975 56554433 44899
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCC-----ceeeEEEeeecCCcceEEEEcHHHHH
Q psy7140 263 GRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANS-----NKLPLNIECFMDDKDVHAELKRNDLE 337 (1304)
Q Consensus 263 G~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----~~~~~~i~~~~~~~~~~~~itr~~fe 337 (1304)
|++|++.|+..+. + -+.+||++|+.+.... ....+.++..... ....++|.+|.
T Consensus 236 G~~it~dIa~~l~--------i-----------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~ 294 (420)
T PRK09472 236 GNVVTSDIAYAFG--------T-----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLA 294 (420)
T ss_pred HHHHHHHHHHHhC--------c-----------CHHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHH
Confidence 9999999986541 1 1367899997654311 1223444433222 23589999999
Q ss_pred HHHHHHHHHHHHHHHH-------HHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCC------------CCCc
Q psy7140 338 TLCEHIFGRIEICLNK-------CIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPST------------TLNQ 398 (1304)
Q Consensus 338 ~~~~~~~~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~------------~~np 398 (1304)
+++++.++++.+.+++ .|.++++....++.|+|+||+|++|.+++.+++.|+.++.. ..+|
T Consensus 295 ~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P 374 (420)
T PRK09472 295 EVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEP 374 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCc
Confidence 9999977776666654 55677887788999999999999999999999999854431 2489
Q ss_pred hhHHHHHHHHHhh
Q psy7140 399 DEAVSRGCALQCA 411 (1304)
Q Consensus 399 ~eaVa~Gaa~~aa 411 (1304)
..++|.|+++|+.
T Consensus 375 ~~ata~Gl~~~~~ 387 (420)
T PRK09472 375 YYSTAVGLLHYGK 387 (420)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999976
No 63
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.70 E-value=6.3e-16 Score=178.14 Aligned_cols=206 Identities=22% Similarity=0.326 Sum_probs=162.3
Q ss_pred EEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeE
Q psy7140 171 VLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKL 250 (1304)
Q Consensus 171 vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 250 (1304)
++++|..+ -+.+.+|.+.+|+++..++-+|.|+|.+..... ++.-+++++|+||||||++++ .+|.+
T Consensus 159 vit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d-------EkelGv~lIDiG~GTTdIai~--~~G~l 225 (418)
T COG0849 159 VITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTED-------EKELGVALIDIGGGTTDIAIY--KNGAL 225 (418)
T ss_pred EEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc-------cHhcCeEEEEeCCCcEEEEEE--ECCEE
Confidence 45555444 466889999999999999999999998774322 356679999999999999995 45777
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCc-----eeeEEEeeecCCc
Q psy7140 251 KVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN-----KLPLNIECFMDDK 325 (1304)
Q Consensus 251 ~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~~~~i~~~~~~~ 325 (1304)
...+.- ++||++++..|+.-|.-. +..||+.|........ ...+.++.. |.
T Consensus 226 ~~~~~i---pvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~v--g~ 281 (418)
T COG0849 226 RYTGVI---PVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSV--GS 281 (418)
T ss_pred EEEeeE---eeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccC--CC
Confidence 766554 999999999999775311 3678888888765322 122333333 33
Q ss_pred ceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCC-----------
Q psy7140 326 DVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPST----------- 394 (1304)
Q Consensus 326 ~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~----------- 394 (1304)
+...++||.++.+++++.+.++..+++..|++.++...-...|+|+||++.+|.+.+..++.|+.+++.
T Consensus 282 ~~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d 361 (418)
T COG0849 282 DIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTD 361 (418)
T ss_pred cccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchh
Confidence 337789999999999999999999999999999998777789999999999999999999999854321
Q ss_pred -CCCchhHHHHHHHHHhhHh
Q psy7140 395 -TLNQDEAVSRGCALQCAIL 413 (1304)
Q Consensus 395 -~~np~eaVa~Gaa~~aa~l 413 (1304)
..+|..+.|.|..++++..
T Consensus 362 ~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 362 IARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred hccCchhhhhHHHHHHHhhc
Confidence 2478999999999998854
No 64
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.69 E-value=2.7e-15 Score=172.90 Aligned_cols=327 Identities=21% Similarity=0.309 Sum_probs=215.3
Q ss_pred eEEEEEccCccEEEEEE--ECC-ceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCCh
Q psy7140 561 SVIGIDFGTESCYLSVA--KSG-GIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDP 637 (1304)
Q Consensus 561 ~vvGID~Gtt~s~va~~--~~g-~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~ 637 (1304)
.++|+|+||+.+++.+. .++ .+.++- -...||-- . .++.+.--++..+.+ +.++..+.++.|....+.
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig----~g~~~SrG-i-k~G~I~di~~~~~sI---~~av~~AE~mag~~i~~v 77 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIG----VGSHPSRG-I-KKGVIVDLDAAAQSI---KKAVEAAERMAGCEIKSV 77 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEe----eecccCcc-c-ccceEEcHHHHHHHH---HHHHHHHHHhcCCCcceE
Confidence 58999999999886664 355 366652 22233311 1 123444444444333 244556666777665432
Q ss_pred hHHHhhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCC---------
Q psy7140 638 FVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFT--------- 708 (1304)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~--------- 708 (1304)
.+. ++-......+. ...+...+ .+.++.+++-..+-. |......+-..++=..|-.|.
T Consensus 78 ~vs-----~sG~~i~s~~~--~g~v~i~~-~~eIt~~DI~rvl~~-----A~~~~~~~~~~ilh~~p~~y~vD~~~~I~d 144 (418)
T COG0849 78 IVS-----LSGNHIKSQNV--NGEVSISE-EKEITQEDIERVLEA-----AKAVAIPPEREILHVIPQEYIVDGQEGIKD 144 (418)
T ss_pred EEE-----eccceeEEEee--EEEEEcCC-CCccCHHHHHHHHHH-----HHhhccCCCceEEEEeeeEEEECCccccCC
Confidence 111 11101111111 11122222 267777777633332 222222222333333333332
Q ss_pred -------------------HHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEE
Q psy7140 709 -------------------NNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 769 (1304)
Q Consensus 709 -------------------~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dv 769 (1304)
..--+.|.+|.+.+|+++..++.+|.|+|.+... ..++.-+++++||||||||+
T Consensus 145 P~gm~G~rL~v~vhvit~~~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~-------~dEkelGv~lIDiG~GTTdI 217 (418)
T COG0849 145 PLGMSGVRLEVEVHVITGPKNILENLEKCVERAGLKVDNIVLEPLASALAVLT-------EDEKELGVALIDIGGGTTDI 217 (418)
T ss_pred ccccccceEEEEEEEEEcchHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccC-------cccHhcCeEEEEeCCCcEEE
Confidence 1124668889999999999999999999987643 23567789999999999999
Q ss_pred EEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCc-----eee
Q psy7140 770 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN-----KLP 844 (1304)
Q Consensus 770 svv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~-----~~~ 844 (1304)
++++ +|.+. +.+..++||++++..|+.-|.-.| ..||++|..+..... ...
T Consensus 218 ai~~--~G~l~---~~~~ipvgG~~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~ 273 (418)
T COG0849 218 AIYK--NGALR---YTGVIPVGGDHVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEET 273 (418)
T ss_pred EEEE--CCEEE---EEeeEeeCccHHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcce
Confidence 9965 44433 344559999999999998875554 679999999865321 123
Q ss_pred eEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCC--
Q psy7140 845 LNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPS-- 922 (1304)
Q Consensus 845 ~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~-- 922 (1304)
+.++...++ ....+||.++.+++++.+.++...++..|++.+....-...|+|+||++.+|.+.+..++.|+.++.
T Consensus 274 i~v~~vg~~--~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig 351 (418)
T COG0849 274 IEVPSVGSD--IPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLG 351 (418)
T ss_pred EecccCCCc--ccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeC
Confidence 444443333 3678999999999999999999999999999999877779999999999999999999999975432
Q ss_pred C----------CCCchhHHHhHHHHHhhHh
Q psy7140 923 T----------TLNQDEAVSRGCALQCAIL 942 (1304)
Q Consensus 923 ~----------~~n~~eava~Gaa~~aa~l 942 (1304)
. ..+|..+.|.|..++++..
T Consensus 352 ~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 352 VPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred CCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 1 2478999999999998754
No 65
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.53 E-value=1.3e-13 Score=163.53 Aligned_cols=239 Identities=14% Similarity=0.179 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHH-HHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCC
Q psy7140 146 QLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQN 224 (1304)
Q Consensus 146 el~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A-~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 224 (1304)
+.+..+++++.+..-. ....-..+++++|..++..+|+.+.+. .+..|++.+.++++|.+|+++++.
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------- 142 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR----------- 142 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-----------
Confidence 3445666666543211 112245789999999998888888775 667999999999999999998853
Q ss_pred CcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhh
Q psy7140 225 PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLK 304 (1304)
Q Consensus 225 ~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 304 (1304)
...+|+|+|+++|+++.+. +|..- .......++||+++|+.|.+++..+. ...+.. .-...++.+|
T Consensus 143 -~~~lVVDiG~~~t~i~pv~--~G~~~-~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iK 208 (371)
T cd00012 143 -TTGLVVDSGDGVTHVVPVY--DGYVL-PHAIKRLDLAGRDLTRYLKELLRERG---YELNSS-------DEREIVRDIK 208 (371)
T ss_pred -CeEEEEECCCCeeEEEEEE--CCEEc-hhhheeccccHHHHHHHHHHHHHhcC---CCccch-------hHHHHHHHHH
Confidence 3578999999999988754 45432 22233568999999999999875432 111111 1123456666
Q ss_pred hccccCCcee------------eEEEeeecCCcceEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCC--C
Q psy7140 305 KQMSANSNKL------------PLNIECFMDDKDVHAELKRNDLETLCEHIFG---------RIEICLNKCIAESKL--P 361 (1304)
Q Consensus 305 ~~Ls~~~~~~------------~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~---------~i~~~i~~~l~~~~~--~ 361 (1304)
+.++...... ......... ....+.++.+.| .+.+.+++ .+.+.|.++|..... .
T Consensus 209 e~~~~v~~~~~~~~~~~~~~~~~~~~~~~lp-d~~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~ 286 (371)
T cd00012 209 EKLCYVALDIEEEQDKSAKETSLLEKTYELP-DGRTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLR 286 (371)
T ss_pred HhheeecCCHHHHHHhhhccCCccceeEECC-CCeEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHH
Confidence 6654321100 000001111 123455665544 34444554 677888888876532 2
Q ss_pred CCcccEEEEEcCCCCchhHHHHHHHhcCC----------CCCCCCCchhHHHHHHHHHhhH
Q psy7140 362 VNAIHSIEIVGGSSRIPAFKNVIESVFHK----------PPSTTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 362 ~~~i~~ViLvGG~sr~p~v~~~l~~~f~~----------~~~~~~np~eaVa~Gaa~~aa~ 412 (1304)
..-.+.|+|+||+|++|.+.+.|.+.+.. .+....+|..++-+||+++|..
T Consensus 287 ~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 287 KDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 22357899999999999999999988751 1234568889999999999865
No 66
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.48 E-value=4.5e-13 Score=158.97 Aligned_cols=237 Identities=14% Similarity=0.183 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCC
Q psy7140 676 LTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNP 754 (1304)
Q Consensus 676 l~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~ 754 (1304)
.+..+++++.+.... ....-..+++++|..++..+|+.+.+. .+..|+..+.++++|.+|+++++.
T Consensus 76 ~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------------ 142 (371)
T cd00012 76 DMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR------------ 142 (371)
T ss_pred HHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC------------
Confidence 344555555433211 112346799999999998888888774 677999999999999999998863
Q ss_pred cEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Q psy7140 755 RYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKK 834 (1304)
Q Consensus 755 ~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~ 834 (1304)
.+.+|+|+|+++|+++.+. +|.. +.......++||+++|+.|.+++..... ..+.. .-...++.+|+
T Consensus 143 ~~~lVVDiG~~~t~i~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe 209 (371)
T cd00012 143 TTGLVVDSGDGVTHVVPVY--DGYV-LPHAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKE 209 (371)
T ss_pred CeEEEEECCCCeeEEEEEE--CCEE-chhhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHH
Confidence 4689999999999988764 3322 2222345589999999999999865431 11111 12345677787
Q ss_pred HhccCCceee------------eE-EeeecCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHhcCCCC-
Q psy7140 835 QMSANSNKLP------------LN-IECFMDDKDVHAELKRNDLETLCEHIFG---------RIEICLNKCIAESKLPV- 891 (1304)
Q Consensus 835 ~Ls~~~~~~~------------~~-ie~l~~~~d~~~~itr~efe~l~~~~~~---------~i~~~i~~~l~~~~~~~- 891 (1304)
.++.-..... .. .-.+.++ ..+.++.+.| .+++.+++ .+.+.|.++++....+.
T Consensus 210 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~ 286 (371)
T cd00012 210 KLCYVALDIEEEQDKSAKETSLLEKTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLR 286 (371)
T ss_pred hheeecCCHHHHHHhhhccCCccceeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHH
Confidence 7654211000 00 0011122 2345565544 22333333 67788888887664322
Q ss_pred -CceeEEEEecCCCCChhHHHHHHHHcCC----------CCCCCCCchhHHHhHHHHHhhH
Q psy7140 892 -NAIHSIEIVGGSSRIPAFKNVIESVFHK----------PPSTTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 892 -~~I~~V~LvGG~srip~v~~~l~~~fg~----------~~~~~~n~~eava~Gaa~~aa~ 941 (1304)
.-++.|+|+||+|++|.+.++|.+.++. .+....+|..++-.||++.|..
T Consensus 287 ~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 287 KDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 2368899999999999999999988852 1234568889999999998864
No 67
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.48 E-value=6.9e-14 Score=137.97 Aligned_cols=196 Identities=20% Similarity=0.272 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEE
Q psy7140 679 MLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVA 758 (1304)
Q Consensus 679 ~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vl 758 (1304)
.+.+++++.+|+.+|..+++..-++|+.-.+...+...+..+.||+.++..++||+|||.-.++. .-.
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~------------dg~ 143 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD------------DGG 143 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC------------CCc
Confidence 46678889999999999999999999998877888888899999999999999999999655442 235
Q ss_pred EEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhcc
Q psy7140 759 FVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSA 838 (1304)
Q Consensus 759 v~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~ 838 (1304)
|+|+|||||-+|+++-.+ |+. ..|..-||.+++..|+-+. ++++ .+||..|..-..
T Consensus 144 VVDiGGGTTGIsi~kkGk----Viy-~ADEpTGGtHmtLvlAG~y--------gi~~-----------EeAE~~Kr~~k~ 199 (277)
T COG4820 144 VVDIGGGTTGISIVKKGK----VIY-SADEPTGGTHMTLVLAGNY--------GISL-----------EEAEQYKRGHKK 199 (277)
T ss_pred EEEeCCCcceeEEEEcCc----EEE-eccCCCCceeEEEEEeccc--------CcCH-----------hHHHHhhhcccc
Confidence 799999999999987443 333 3477999998887776543 3332 557777765432
Q ss_pred CCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcC
Q psy7140 839 NSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH 918 (1304)
Q Consensus 839 ~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg 918 (1304)
..+ .--.+.|+++++.+.+.+.++..+ |..+.|+||+|.-|.+.+.+++.|+
T Consensus 200 ~~E-----------------------if~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~ 251 (277)
T COG4820 200 GEE-----------------------IFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLA 251 (277)
T ss_pred chh-----------------------cccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhc
Confidence 211 112367999999999999998776 4679999999999999999999999
Q ss_pred CCCCCCCCchhHHHhHHHHH
Q psy7140 919 KPPSTTLNQDEAVSRGCALQ 938 (1304)
Q Consensus 919 ~~~~~~~n~~eava~Gaa~~ 938 (1304)
.++..+..|....-+|.|+.
T Consensus 252 l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 252 LQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred cccccCCCcceechhhhhhc
Confidence 99888888877777776653
No 68
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.46 E-value=1.2e-11 Score=143.45 Aligned_cols=211 Identities=13% Similarity=0.157 Sum_probs=139.3
Q ss_pred EEEeecCCCCHHH-HHHHHHHHHHc------C------CCeEEeechhHHHHHHhhhhcCCCC-CCCCCCcEEEEEEecC
Q psy7140 170 CVLAVPSYFTNNE-RKALLTAASIA------G------LNVLRLINETTATALAYGIYKQDLP-EDDQNPRYVAFVDFGY 235 (1304)
Q Consensus 170 ~vitVPa~~~~~q-r~~l~~A~~~A------G------l~~~~li~Ep~AAal~y~~~~~~~~-~~~~~~~~vlV~D~Gg 235 (1304)
++.+.|..+-..+ ++.+++..... | ++.+.++.||.+|.+.+........ ........++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 3458999885545 36677655321 1 2446789999999888876533211 0111335689999999
Q ss_pred CeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceee
Q psy7140 236 SALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLP 315 (1304)
Q Consensus 236 gT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~ 315 (1304)
||+|++++. ++.+. ...++....|..++.+.|.+++..+ .++.... .. ++ +++ |....
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~---~~~~~~~--~~---~i----e~~---l~~g~---- 252 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKK---EEGASIT--PY---ML----EKG---LEYGA---- 252 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhh---CCCCCCC--HH---HH----HHH---HHcCc----
Confidence 999999975 34332 3334457899999999999887432 2232221 11 12 222 21111
Q ss_pred EEEeeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCC
Q psy7140 316 LNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTT 395 (1304)
Q Consensus 316 ~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~ 395 (1304)
+.+ ..+.. +.+ ++++.++++++++++...++..+.+ ..+++.|+|+||++++ +++.|++.|+.- ...
T Consensus 253 i~~---~~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~-~~~ 319 (344)
T PRK13917 253 CKL---NQKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV-EKA 319 (344)
T ss_pred EEe---CCCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe-EEc
Confidence 111 01111 223 4668889999999998888888753 3478999999999987 889999999854 566
Q ss_pred CCchhHHHHHHHHHhhHhcC
Q psy7140 396 LNQDEAVSRGCALQCAILSP 415 (1304)
Q Consensus 396 ~np~eaVa~Gaa~~aa~ls~ 415 (1304)
-||..|-|+|...+|.++.+
T Consensus 320 ~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 320 DESQFANVRGYYKYGELLKN 339 (344)
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 89999999999999986654
No 69
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.45 E-value=1.3e-12 Score=155.37 Aligned_cols=237 Identities=16% Similarity=0.233 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcC--ccceEEEeecCCCCHHHHHHHHHHH-HHcCCCeEEeechhHHHHHHhhhhcCCCCCC
Q psy7140 145 EQLTAMLFTKLKDISENEIQN--KVHDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPED 221 (1304)
Q Consensus 145 ~el~~~~L~~lk~~a~~~~~~--~~~~~vitVPa~~~~~qr~~l~~A~-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~ 221 (1304)
-+.+..+++++... .++. .-..++++.|...+..+|+.+.+.+ +..|++.+.++++|.+|+++++
T Consensus 74 ~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g--------- 141 (373)
T smart00268 74 WDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG--------- 141 (373)
T ss_pred HHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC---------
Confidence 44556667666553 2222 2346899999999999999998887 5679999999999999998875
Q ss_pred CCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q psy7140 222 DQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301 (1304)
Q Consensus 222 ~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 301 (1304)
....+|+|+|+++++++.+. +|.. +........+||+++|+.|.+++... ....... .-...++
T Consensus 142 ---~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~---~~~~~~~-------~~~~~~~ 205 (373)
T smart00268 142 ---RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLTDYLKELLSER---GYQFNSS-------AEFEIVR 205 (373)
T ss_pred ---CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHHHHHHHHHHhc---CCCCCcH-------HHHHHHH
Confidence 23578999999999999865 4433 22222345899999999999887541 0111110 1123455
Q ss_pred HhhhccccCCce--------------eeEEEee-ecCCcceEEEEcHHHHHHHHHHHH---------HHHHHHHHHHHHh
Q psy7140 302 KLKKQMSANSNK--------------LPLNIEC-FMDDKDVHAELKRNDLETLCEHIF---------GRIEICLNKCIAE 357 (1304)
Q Consensus 302 ~~K~~Ls~~~~~--------------~~~~i~~-~~~~~~~~~~itr~~fe~~~~~~~---------~~i~~~i~~~l~~ 357 (1304)
.+|+.+...... ....... +-++.. +.+..+.| .+.+.++ ..+.++|.++|+.
T Consensus 206 ~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~--~~~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~ 282 (373)
T smart00268 206 EIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNT--IKVGNERF-RIPEILFKPELIGLEQKGIHELVYESIQK 282 (373)
T ss_pred HhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCE--EEEChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHh
Confidence 566554321110 0000011 112322 33333332 2333333 3577777777775
Q ss_pred CCCC--CCcccEEEEEcCCCCchhHHHHHHHhcCC--------CCCCCCCchhHHHHHHHHHhhH
Q psy7140 358 SKLP--VNAIHSIEIVGGSSRIPAFKNVIESVFHK--------PPSTTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 358 ~~~~--~~~i~~ViLvGG~sr~p~v~~~l~~~f~~--------~~~~~~np~eaVa~Gaa~~aa~ 412 (1304)
.... ..=.+.|+|+||+|++|.+.+.|.+.+.. .+....++..++=+||+++|..
T Consensus 283 ~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 283 CDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred CCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 4321 11136799999999999999999877731 1222345556666777776653
No 70
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.39 E-value=6e-11 Score=137.52 Aligned_cols=211 Identities=12% Similarity=0.163 Sum_probs=139.0
Q ss_pred EEEeecCCCCHHH-HHHHHHHHHHc------C------CceeeeechhHHHHHHhccccCCCC-CCCCCCcEEEEEEeCC
Q psy7140 699 CVLAVPSYFTNNE-RKALLTAASIA------G------LNVLRLINETTATALAYGIYKQDLP-EDDQNPRYVAFVDFGY 764 (1304)
Q Consensus 699 ~VitVP~~f~~~q-r~~l~~Aa~~A------G------l~~~~li~Ep~Aaal~y~~~~~~~~-~~~~~~~~vlv~D~Gg 764 (1304)
++...|..+-..+ ++.+++..... | ++.+.++.||.+|.+.+.+...... ........++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 3458999885444 36676654321 1 2346788999999888766432110 0112345789999999
Q ss_pred ceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceee
Q psy7140 765 SALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLP 844 (1304)
Q Consensus 765 gt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~ 844 (1304)
||||++++. ++.+. ...++....|..++.+.|.+++..+. ++.... .. ++...|....
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~~----------~ie~~l~~g~---- 252 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKE---EGASIT--PY----------MLEKGLEYGA---- 252 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhC---CCCCCC--HH----------HHHHHHHcCc----
Confidence 999999985 33332 33344567899999999988885432 222221 11 1222232211
Q ss_pred eEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCC
Q psy7140 845 LNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTT 924 (1304)
Q Consensus 845 ~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~ 924 (1304)
+.+. ...+. .+ ++++.++++++++++...++..+.. ..+++.|+|+||++++ +++.|++.|+.- ...
T Consensus 253 i~~~---~~~~i--d~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~-~~~ 319 (344)
T PRK13917 253 CKLN---QKTVI--DF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV-EKA 319 (344)
T ss_pred EEeC---CCceE--eh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe-EEc
Confidence 1111 11111 22 4667889999999999999888853 3478999999999987 889999999753 566
Q ss_pred CCchhHHHhHHHHHhhHhcC
Q psy7140 925 LNQDEAVSRGCALQCAILSP 944 (1304)
Q Consensus 925 ~n~~eava~Gaa~~aa~ls~ 944 (1304)
.||..|.|+|...+|..+.+
T Consensus 320 ~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 320 DESQFANVRGYYKYGELLKN 339 (344)
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 79999999999999876544
No 71
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.39 E-value=2.5e-13 Score=134.08 Aligned_cols=196 Identities=20% Similarity=0.301 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEE
Q psy7140 150 MLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVA 229 (1304)
Q Consensus 150 ~~L~~lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vl 229 (1304)
.+.+.+++.+|+.+|.+++++.=++|..-.....+...+..+.||+.++..++||||||--..++. -.
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d------------g~ 143 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD------------GG 143 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC------------Cc
Confidence 568889999999999999999999999987777788888899999999999999999996554422 24
Q ss_pred EEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhcccc
Q psy7140 230 FVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSA 309 (1304)
Q Consensus 230 V~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 309 (1304)
|+|+||||+-+|+++- |.+. .+ .|..-||.++...|+-+ |+++. ++||.-|+.-..
T Consensus 144 VVDiGGGTTGIsi~kk--GkVi--y~-ADEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~ 199 (277)
T COG4820 144 VVDIGGGTTGISIVKK--GKVI--YS-ADEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKK 199 (277)
T ss_pred EEEeCCCcceeEEEEc--CcEE--Ee-ccCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhcccc
Confidence 7899999999999764 4333 23 37799999988777643 34432 566777764432
Q ss_pred CCceeeEEEeeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcC
Q psy7140 310 NSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH 389 (1304)
Q Consensus 310 ~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~ 389 (1304)
..+ .--.+.|+++++.+.+.+-|+..+ +..+.|+||+|.-|.+.+..++.|+
T Consensus 200 ~~E-----------------------if~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~ 251 (277)
T COG4820 200 GEE-----------------------IFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLA 251 (277)
T ss_pred chh-----------------------cccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhc
Confidence 211 111367899999999999888765 4579999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHH
Q psy7140 390 KPPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 390 ~~~~~~~np~eaVa~Gaa~~ 409 (1304)
.++..+..|....-+|-|+-
T Consensus 252 l~v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 252 LQVHLPQHPLYMTPLGIASS 271 (277)
T ss_pred cccccCCCcceechhhhhhc
Confidence 88888888877777776654
No 72
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.39 E-value=5.7e-12 Score=149.73 Aligned_cols=238 Identities=16% Similarity=0.218 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccCCCCCCCC
Q psy7140 674 EQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPEDDQ 752 (1304)
Q Consensus 674 eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~ 752 (1304)
-+.+..+++++....-. ....-..++++.|...+..+|+.+.+.+ +..|++.+.++++|.+|+++++
T Consensus 74 ~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----------- 141 (373)
T smart00268 74 WDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASG----------- 141 (373)
T ss_pred HHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-----------
Confidence 34445566665543111 1122357899999999999999998886 5779999999999999998875
Q ss_pred CCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q psy7140 753 NPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKL 832 (1304)
Q Consensus 753 ~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~ 832 (1304)
..+.+|+|+|+++|+++.+. +|.. +.......++||.++|+.|.+++...- ...+.. .-...++.+
T Consensus 142 -~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~i 207 (373)
T smart00268 142 -RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLTDYLKELLSERG---YQFNSS-------AEFEIVREI 207 (373)
T ss_pred -CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHh
Confidence 24689999999999999876 3322 222233458999999999999886511 011110 112345666
Q ss_pred HHHhccCCc----------------eeeeEEeeecCCcceEEEecHHHH---HHHHHHH-----HHHHHHHHHHHHHhcC
Q psy7140 833 KKQMSANSN----------------KLPLNIECFMDDKDVHAELKRNDL---ETLCEHI-----FGRIEICLNKCIAESK 888 (1304)
Q Consensus 833 K~~Ls~~~~----------------~~~~~ie~l~~~~d~~~~itr~ef---e~l~~~~-----~~~i~~~i~~~l~~~~ 888 (1304)
|+.++.-.. ..+... .+.++..+ .+..+.| |.++.|. ...+.+.|.++++...
T Consensus 208 Ke~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~lpdg~~~--~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~ 284 (373)
T smart00268 208 KEKLCYVAEDFEKEMKKARESSESSKLEKTY-ELPDGNTI--KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCD 284 (373)
T ss_pred hhheeeecCChHHHHHHhhhcccccccceeE-ECCCCCEE--EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCC
Confidence 665532110 000010 11233333 3333333 2223221 2357777778877654
Q ss_pred CCC--CceeEEEEecCCCCChhHHHHHHHHcCC------C--CCCCCCchhHHHhHHHHHhh
Q psy7140 889 LPV--NAIHSIEIVGGSSRIPAFKNVIESVFHK------P--PSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 889 ~~~--~~I~~V~LvGG~srip~v~~~l~~~fg~------~--~~~~~n~~eava~Gaa~~aa 940 (1304)
.+. .-.+.|+|+||+|++|.+.++|.+.+.. + +..+.++..++=.||++.|.
T Consensus 285 ~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 285 IDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred HhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccC
Confidence 322 1246799999999999999999988731 1 22334556677778777765
No 73
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.21 E-value=2e-09 Score=129.12 Aligned_cols=208 Identities=12% Similarity=0.122 Sum_probs=131.9
Q ss_pred ceEEEeecCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEE
Q psy7140 697 HDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFV 775 (1304)
Q Consensus 697 ~~~VitVP~~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~ 775 (1304)
..+++|.|..++..+|+.+.+.+ +..+.+-+.+..+|.+++++++...... ......+-||||+|+|+|+++-+.
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~--~~~g~~tglVVDiG~~~T~i~PV~-- 178 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAK--ELGGTLTGTVIDSGDGVTHVIPVV-- 178 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhccccccc--ccCCceeEEEEECCCCceEEEEEE--
Confidence 46899999999999999987765 5568899999999999998764322100 000234569999999999998764
Q ss_pred CCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCce-------------
Q psy7140 776 KGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNK------------- 842 (1304)
Q Consensus 776 ~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~------------- 842 (1304)
+|.. +.......++||.++|+.|.+++.+.. .+.... .....++.+|+.++--...
T Consensus 179 ~G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~ 247 (414)
T PTZ00280 179 DGYV-IGSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPK 247 (414)
T ss_pred CCEE-cccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcc
Confidence 2322 112222447999999999999985432 112111 1123466777776531100
Q ss_pred ---eeeEEeeecCCcceEEEecHHHHH---HHHHHHH------HHHHHHHHHHHHhcCCCC--CceeEEEEecCCCCChh
Q psy7140 843 ---LPLNIECFMDDKDVHAELKRNDLE---TLCEHIF------GRIEICLNKCIAESKLPV--NAIHSIEIVGGSSRIPA 908 (1304)
Q Consensus 843 ---~~~~ie~l~~~~d~~~~itr~efe---~l~~~~~------~~i~~~i~~~l~~~~~~~--~~I~~V~LvGG~srip~ 908 (1304)
..+..+...++....+.|..+.|. -++.|-+ ..+.+.|.+++.++..+. .-.+.|+|+||+|.+|.
T Consensus 248 ~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~G 327 (414)
T PTZ00280 248 NHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKG 327 (414)
T ss_pred cccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcC
Confidence 011111111233456777777764 2444422 145677777777664332 22577999999999999
Q ss_pred HHHHHHHHcCC
Q psy7140 909 FKNVIESVFHK 919 (1304)
Q Consensus 909 v~~~l~~~fg~ 919 (1304)
+.++|++.+..
T Consensus 328 f~eRL~~El~~ 338 (414)
T PTZ00280 328 FDKRLQRDVRK 338 (414)
T ss_pred HHHHHHHHHHH
Confidence 99999988853
No 74
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.19 E-value=3e-09 Score=127.66 Aligned_cols=229 Identities=12% Similarity=0.098 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHHH-HcCCCeEEeechhHHHHHHhhhhcCCCCCCCCC
Q psy7140 146 QLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAAS-IAGLNVLRLINETTATALAYGIYKQDLPEDDQN 224 (1304)
Q Consensus 146 el~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~-~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 224 (1304)
+.+..++.|+....- .....-..+++|.|..++..+|+.+.+.+- ..|++-+.+..+|.+|++++....... ....
T Consensus 82 d~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~--~~~g 158 (414)
T PTZ00280 82 DLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAK--ELGG 158 (414)
T ss_pred HHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhccccccc--ccCC
Confidence 445556666432110 011122357999999999999999988764 458999999999999998764322110 0001
Q ss_pred CcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhh
Q psy7140 225 PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLK 304 (1304)
Q Consensus 225 ~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 304 (1304)
...-||||+|.|+++++-+. +|..-- .......+||+++|+.|.+++.++ +...... .....++.+|
T Consensus 159 ~~tglVVDiG~~~T~i~PV~--~G~~l~-~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iK 225 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVV--DGYVIG-SSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIK 225 (414)
T ss_pred ceeEEEEECCCCceEEEEEE--CCEEcc-cceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHH
Confidence 23458999999999987743 454322 222245799999999999987532 1111111 1123456666
Q ss_pred hccccCCc----------------eeeEEEeeecCCcceEEEEcHHHHHH---HHHHH-H-----HHHHHHHHHHHHhCC
Q psy7140 305 KQMSANSN----------------KLPLNIECFMDDKDVHAELKRNDLET---LCEHI-F-----GRIEICLNKCIAESK 359 (1304)
Q Consensus 305 ~~Ls~~~~----------------~~~~~i~~~~~~~~~~~~itr~~fe~---~~~~~-~-----~~i~~~i~~~l~~~~ 359 (1304)
+.++.... ...+..+....+....+.|..+.|.- ++.|- + ..+.++|.++|.+..
T Consensus 226 e~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~ 305 (414)
T PTZ00280 226 EKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCP 305 (414)
T ss_pred HhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCC
Confidence 65542110 00111111122344567787776653 22231 1 145667777776553
Q ss_pred CC--CCcccEEEEEcCCCCchhHHHHHHHhcCC
Q psy7140 360 LP--VNAIHSIEIVGGSSRIPAFKNVIESVFHK 390 (1304)
Q Consensus 360 ~~--~~~i~~ViLvGG~sr~p~v~~~l~~~f~~ 390 (1304)
.. ..=.+.|+|+||+|.+|.+.+.|++.+..
T Consensus 306 ~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~ 338 (414)
T PTZ00280 306 IDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRK 338 (414)
T ss_pred hhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHH
Confidence 22 11246799999999999999999988853
No 75
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.17 E-value=9.2e-10 Score=132.08 Aligned_cols=246 Identities=17% Similarity=0.251 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHH-HHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCC
Q psy7140 146 QLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPEDDQN 224 (1304)
Q Consensus 146 el~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 224 (1304)
+....++.++.... -.....-..++++.|..++..+|+.+.+.+ +..|++.+.++++|.+|+++++..
T Consensus 74 ~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~---------- 142 (393)
T PF00022_consen 74 DALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRT---------- 142 (393)
T ss_dssp HHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBS----------
T ss_pred cccccccccccccc-cccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccc----------
Confidence 44555666654432 111223456999999999999999887775 567999999999999999887532
Q ss_pred CcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHH---HcCCCCC----CCHHHHHHHH
Q psy7140 225 PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVK---RYKIDPR----TNARAYIRLL 297 (1304)
Q Consensus 225 ~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~---~~~~~~~----~~~~~~~~L~ 297 (1304)
.-||||+|.+.+.++-+ .+|..- ........+||+++++.|.+.+..+-.. .+..... ........-.
T Consensus 143 --tglVVD~G~~~t~v~pV--~dG~~~-~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (393)
T PF00022_consen 143 --TGLVVDIGYSSTSVVPV--VDGYVL-PHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDE 217 (393)
T ss_dssp --SEEEEEESSS-EEEEEE--ETTEE--GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHH
T ss_pred --cccccccceeeeeeeee--eecccc-ccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhh
Confidence 24789999999987764 455431 1222245899999999999988753100 0000000 0010011112
Q ss_pred HHHHHhhhccccC--------------CceeeEEEeeecCCcceEEEEcHHHHHHHHHHHHH----------------HH
Q psy7140 298 SEIEKLKKQMSAN--------------SNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFG----------------RI 347 (1304)
Q Consensus 298 ~~~e~~K~~Ls~~--------------~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~----------------~i 347 (1304)
..++.+|+.+... .....+. +-++. .+.+..+.| .+.+.+++ .+
T Consensus 218 ~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~---lPdg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL 291 (393)
T PF00022_consen 218 EIVEEIKEECCYVSEDPDEEQEEQASENPEKSYE---LPDGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGL 291 (393)
T ss_dssp HHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCH
T ss_pred ccchhccchhhhcccccccccccccccccceecc---ccccc--ccccccccc-cccccccccccccccccccccccchh
Confidence 2233334332211 0111111 11232 566666555 33454443 47
Q ss_pred HHHHHHHHHhCCCCCCc--ccEEEEEcCCCCchhHHHHHHHhcCC------C--CCCCC-CchhHHHHHHHHHhhHh
Q psy7140 348 EICLNKCIAESKLPVNA--IHSIEIVGGSSRIPAFKNVIESVFHK------P--PSTTL-NQDEAVSRGCALQCAIL 413 (1304)
Q Consensus 348 ~~~i~~~l~~~~~~~~~--i~~ViLvGG~sr~p~v~~~l~~~f~~------~--~~~~~-np~eaVa~Gaa~~aa~l 413 (1304)
.++|.+++......... ...|+|+||+|++|.+.+.|.+.+.. . +.... +|..++=+||+++|..-
T Consensus 292 ~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 292 PELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 78888888766432221 47899999999999999999877642 1 22333 89999999999998753
No 76
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.17 E-value=3.3e-09 Score=124.94 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCC
Q psy7140 709 NNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDS 788 (1304)
Q Consensus 709 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~ 788 (1304)
....+.+.++++.||+++..+..+|.|.+-.+.+....+.........++++|+|+++|++++++ ++.+.. ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--~g~~~~---~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--PGRMLF---TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--CCeEEE---EEEe
Confidence 45577888999999999999999999987666311111111112222499999999999999975 443332 3355
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHH
Q psy7140 789 EIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETL 868 (1304)
Q Consensus 789 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l 868 (1304)
.+||.+|++.|.+.+ +++ ..+||+.|...+.... . -.++
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~~--------------~--------~~~~ 255 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPLL--------------Y--------DPEV 255 (348)
T ss_pred echHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCCc--------------h--------hHHH
Confidence 799999999887543 222 2568888875432110 0 0234
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCC-------------------CCCc
Q psy7140 869 CEHIFGRIEICLNKCIAES--KLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPST-------------------TLNQ 927 (1304)
Q Consensus 869 ~~~~~~~i~~~i~~~l~~~--~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~-------------------~~n~ 927 (1304)
+++.++++...|.+.|+-. ......++.|+|+||+++++.+.+.+++.||.++.. ..+|
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAP 335 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhhhH
Confidence 5666666666677776522 223346899999999999999999999999854321 1345
Q ss_pred hhHHHhHHHHHh
Q psy7140 928 DEAVSRGCALQC 939 (1304)
Q Consensus 928 ~eava~Gaa~~a 939 (1304)
..++|.|+|+++
T Consensus 336 ~~~~a~Glalr~ 347 (348)
T TIGR01175 336 ALMTALGLALRG 347 (348)
T ss_pred HHHHHhhHhhcC
Confidence 678888888764
No 77
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.12 E-value=4.7e-09 Score=121.24 Aligned_cols=208 Identities=18% Similarity=0.183 Sum_probs=129.4
Q ss_pred ccceEEEeecCCCCHHHHHHHHHHHHHc---------CCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCC
Q psy7140 166 KVHDCVLAVPSYFTNNERKALLTAASIA---------GLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYS 236 (1304)
Q Consensus 166 ~~~~~vitVPa~~~~~qr~~l~~A~~~A---------Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~Ggg 236 (1304)
.+..+|++.|..+...+|+.+++..... -+..+.+++||.+|.+.|........ .....++|+|+|++
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~---~~~~~~lVIDIG~~ 177 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLL---TGKEQSLIIDPGYF 177 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcc---cCcCcEEEEecCCC
Confidence 3557999999999999999999987532 23557889999999888865432111 13456899999999
Q ss_pred eEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeE
Q psy7140 237 ALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPL 316 (1304)
Q Consensus 237 T~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~ 316 (1304)
|+|+.++. ++.+ +...++....|-.++-+.|.+.+.++ ++.+.......+.+ +.+.-|. +
T Consensus 178 TtD~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~----~g~~~~~~~~~i~~---~l~~g~~----------~ 237 (320)
T TIGR03739 178 TFDWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKD----IGTPAYRDIDRIDL---ALRTGKQ----------P 237 (320)
T ss_pred eeeeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhh----cCCCCccCHHHHHH---HHHhCCc----------e
Confidence 99998763 4444 44555567789888888888777544 44431111111111 1111110 0
Q ss_pred EEeeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCC-CCCC
Q psy7140 317 NIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP-PSTT 395 (1304)
Q Consensus 317 ~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~-~~~~ 395 (1304)
. +.+. .+.|+ +.-+..+..++++...+.+.+. ...+++.|+|+||++. .+++.|++.|+.. +...
T Consensus 238 ~----~~gk--~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~ 303 (320)
T TIGR03739 238 R----IYQK--PVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEV 303 (320)
T ss_pred e----ecce--ecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEec
Confidence 0 0111 11222 2222334444444444444332 1245889999999997 6688999999863 3456
Q ss_pred CCchhHHHHHHHHHh
Q psy7140 396 LNQDEAVSRGCALQC 410 (1304)
Q Consensus 396 ~np~eaVa~Gaa~~a 410 (1304)
.||..|.|+|-..++
T Consensus 304 ~dp~~ANarG~~~~g 318 (320)
T TIGR03739 304 DEPMFANVRGFQIAG 318 (320)
T ss_pred CCcHHHHHHHHHHhh
Confidence 799999999977665
No 78
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.11 E-value=1.4e-09 Score=130.48 Aligned_cols=247 Identities=17% Similarity=0.250 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccCCCCCCCCC
Q psy7140 675 QLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPEDDQN 753 (1304)
Q Consensus 675 el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 753 (1304)
+.+..+++++....- .....-..++++.|..++...|+.+.+.+ +..|+..+.+++++.+|+++++.
T Consensus 74 ~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~----------- 141 (393)
T PF00022_consen 74 DALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGR----------- 141 (393)
T ss_dssp HHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTB-----------
T ss_pred ccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeeccccccccccc-----------
Confidence 334455555544321 12234457999999999999999887764 67799999999999999988864
Q ss_pred CcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH---hcCCCCC----CCHHHHHHHH
Q psy7140 754 PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVK---RYKIDPR----TNARAYIRLL 826 (1304)
Q Consensus 754 ~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~---~~~~~~~----~~~~~~~rL~ 826 (1304)
.+-+|||+|++.|.++-|. +|.. +.......++||.++++.|.+.+..+-.. .+..... ...-....-.
T Consensus 142 -~tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (393)
T PF00022_consen 142 -TTGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDE 217 (393)
T ss_dssp -SSEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHH
T ss_pred -ccccccccceeeeeeeeee--eccc-cccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhh
Confidence 2468999999999887763 3322 11122234799999999999999773100 0000000 0111111223
Q ss_pred HHHHHHHHHhccCCce------------eeeEEeeecCCcceEEEecHHHHHHHHHHHHH----------------HHHH
Q psy7140 827 SEIEKLKKQMSANSNK------------LPLNIECFMDDKDVHAELKRNDLETLCEHIFG----------------RIEI 878 (1304)
Q Consensus 827 ~~ae~~K~~Ls~~~~~------------~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~----------------~i~~ 878 (1304)
...+.+|+.++.-... ..... .+-++. .+.+..+.| .+.+.+++ .+.+
T Consensus 218 ~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~-~lPdg~--~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~ 293 (393)
T PF00022_consen 218 EIVEEIKEECCYVSEDPDEEQEEQASENPEKSY-ELPDGQ--TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPE 293 (393)
T ss_dssp HHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEE-E-TTSS--EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHH
T ss_pred ccchhccchhhhcccccccccccccccccceec-cccccc--ccccccccc-cccccccccccccccccccccccchhhh
Confidence 3445556554321100 01111 122333 456665555 22333332 5778
Q ss_pred HHHHHHHhcCCCCCc--eeEEEEecCCCCChhHHHHHHHHcCC------C--CCCCC-CchhHHHhHHHHHhhH
Q psy7140 879 CLNKCIAESKLPVNA--IHSIEIVGGSSRIPAFKNVIESVFHK------P--PSTTL-NQDEAVSRGCALQCAI 941 (1304)
Q Consensus 879 ~i~~~l~~~~~~~~~--I~~V~LvGG~srip~v~~~l~~~fg~------~--~~~~~-n~~eava~Gaa~~aa~ 941 (1304)
.|.+++.....+... ...|+|+||+|++|.+.++|.+.+.. . +.... ++..++=.||+++|..
T Consensus 294 ~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 294 LILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp HHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 888888876543322 57899999999999999999887732 1 22333 8999999999999874
No 79
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.08 E-value=4.1e-09 Score=123.02 Aligned_cols=183 Identities=22% Similarity=0.306 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCC
Q psy7140 710 NERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSE 789 (1304)
Q Consensus 710 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~ 789 (1304)
..-+.+.++++.|||++..+=-++.|.+-.|......++. ......++++|+|+.+|.++++. +|.+... ....
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~-~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f~---R~i~ 209 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPD-EEDAETVALVDIGASSTTVIIFQ--NGKPIFS---RSIP 209 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST-----T-EEEEEEE-SS-EEEEEEE--TTEEEEE---EEES
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCc-ccccceEEEEEecCCeEEEEEEE--CCEEEEE---EEEe
Confidence 4466778889999999988877777765444332222222 12346899999999999999864 5544333 3448
Q ss_pred CCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHH
Q psy7140 790 IGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLC 869 (1304)
Q Consensus 790 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~ 869 (1304)
+||.++++.|++.+.-.+ .+||+.|..-+-.. +...+.+
T Consensus 210 ~G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~~----------------------~~~~~~l 248 (340)
T PF11104_consen 210 IGGNDLTEAIARELGIDF-------------------EEAEELKRSGGLPE----------------------EYDQDAL 248 (340)
T ss_dssp -SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT----------------------------HHHHH
T ss_pred eCHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCCCc----------------------chHHHHH
Confidence 999999999998764443 45677766432100 2234556
Q ss_pred HHHHHHHHHHHHHHHH--hcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCC---------CCC----------Cch
Q psy7140 870 EHIFGRIEICLNKCIA--ESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPS---------TTL----------NQD 928 (1304)
Q Consensus 870 ~~~~~~i~~~i~~~l~--~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~---------~~~----------n~~ 928 (1304)
.+.++++...|++.++ .+......|+.|+|+||++++|.+.+.|++.+|.++. .+. .|.
T Consensus 249 ~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 328 (340)
T PF11104_consen 249 RPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQ 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhH
Confidence 6777777777777776 2333455799999999999999999999999986431 111 366
Q ss_pred hHHHhHHHHHh
Q psy7140 929 EAVSRGCALQC 939 (1304)
Q Consensus 929 eava~Gaa~~a 939 (1304)
.++|.|+|+..
T Consensus 329 ~avA~GLAlR~ 339 (340)
T PF11104_consen 329 FAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 79999999864
No 80
>PTZ00281 actin; Provisional
Probab=99.05 E-value=4.8e-09 Score=123.94 Aligned_cols=218 Identities=11% Similarity=0.133 Sum_probs=132.5
Q ss_pred cceEEEeecCCCCHHHHHHHHHH-HHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEE
Q psy7140 167 VHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 245 (1304)
Q Consensus 167 ~~~~vitVPa~~~~~qr~~l~~A-~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 245 (1304)
-..+++|-|......+|+.+.+. .+..+++-+.+...|.+++++++. ..-||||+|.+.+.++-+.
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------------~tglVVDiG~~~t~v~PV~- 167 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------------TTGIVMDSGDGVSHTVPIY- 167 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------------ceEEEEECCCceEEEEEEE-
Confidence 34678899999999999999885 466788999999999999877642 2458999999999876533
Q ss_pred ECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCce-----------e
Q psy7140 246 VKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNK-----------L 314 (1304)
Q Consensus 246 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-----------~ 314 (1304)
+|.. +........+||+++++.|.+.|... +...... .. ...++.+|+.++-.... .
T Consensus 168 -dG~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~--~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (376)
T PTZ00281 168 -EGYA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTTT--AE---REIVRDIKEKLAYVALDFEAEMQTAASSS 235 (376)
T ss_pred -eccc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCcH--HH---HHHHHHHHHhcEEecCCchHHHHhhhcCc
Confidence 3322 22233355899999999999887432 1111111 11 12345566655421100 0
Q ss_pred eEEEeeecCCcceEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCCC--CCcccEEEEEcCCCCchhHHHH
Q psy7140 315 PLNIECFMDDKDVHAELKRNDLETLCEHIFG---------RIEICLNKCIAESKLP--VNAIHSIEIVGGSSRIPAFKNV 383 (1304)
Q Consensus 315 ~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~---------~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~sr~p~v~~~ 383 (1304)
.........+. -.+.+..+.| .+.+.+++ .+.++|.+++...... ..-.+.|+|+||+|.+|.+.+.
T Consensus 236 ~~~~~y~LPdg-~~i~i~~er~-~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 313 (376)
T PTZ00281 236 ALEKSYELPDG-QVITIGNERF-RCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADR 313 (376)
T ss_pred ccceeEECCCC-CEEEeeHHHe-eCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHH
Confidence 01111112221 2345555544 22233333 3566677776654321 1123689999999999999998
Q ss_pred HHHhcCC----C----CCCCCCchhHHHHHHHHHhh
Q psy7140 384 IESVFHK----P----PSTTLNQDEAVSRGCALQCA 411 (1304)
Q Consensus 384 l~~~f~~----~----~~~~~np~eaVa~Gaa~~aa 411 (1304)
|+..+.. . +....++..++=+|++++|+
T Consensus 314 L~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 314 MNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 8877641 1 12334556677777777765
No 81
>PTZ00452 actin; Provisional
Probab=99.03 E-value=1.3e-08 Score=119.83 Aligned_cols=217 Identities=13% Similarity=0.156 Sum_probs=136.2
Q ss_pred cceEEEeecCCCCHHHHHHHHHHH-HHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEE
Q psy7140 696 VHDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 774 (1304)
Q Consensus 696 ~~~~VitVP~~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 774 (1304)
-..+++|-|...+..+|+.+.+.+ +..+.+.+.+.+.+.+++++++. .+-+|||+|.|.|+++-+.
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~------------~tglVVDiG~~~t~v~PV~- 166 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK------------TIGLVVDSGEGVTHCVPVF- 166 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC------------ceeeeecCCCCcceEEEEE-
Confidence 457899999999999999987764 66788888899999998877642 3578999999999987653
Q ss_pred ECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCce------------
Q psy7140 775 VKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNK------------ 842 (1304)
Q Consensus 775 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~------------ 842 (1304)
+|.. +.......++||.++++-|.+.|... +....... . ...++.+|+.++--...
T Consensus 167 -dG~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~--~---~~~~~~iKe~~c~v~~d~~~e~~~~~~~~ 234 (375)
T PTZ00452 167 -EGHQ-IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEPH--Q---RIIVKNIKERLCYTALDPQDEKRIYKESN 234 (375)
T ss_pred -CCEE-eccceEEeeccchHHHHHHHHHHHhc-----CCCCCCHH--H---HHHHHHHHHHhccccCcHHHHHHHhhccC
Confidence 3322 22222344799999999998887432 11121111 0 12355666666521100
Q ss_pred -eeeEEeeecCCcceEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHhcCCCC--CceeEEEEecCCCCChhHHH
Q psy7140 843 -LPLNIECFMDDKDVHAELKRNDL---ETLCEHIF-----GRIEICLNKCIAESKLPV--NAIHSIEIVGGSSRIPAFKN 911 (1304)
Q Consensus 843 -~~~~ie~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l~~~~~~~--~~I~~V~LvGG~srip~v~~ 911 (1304)
..... .+-++. .+.+..+.| |-++.|-+ ..+.+++.+++..+..+. .-...|+|+||+|.+|.+.+
T Consensus 235 ~~~~~y-~LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~ 311 (375)
T PTZ00452 235 SQDSPY-KLPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIAN 311 (375)
T ss_pred CcCceE-ECCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHH
Confidence 00011 122333 345666666 22334422 245677777777654322 22578999999999999999
Q ss_pred HHHHHcCC----C----CCCCCCchhHHHhHHHHHhh
Q psy7140 912 VIESVFHK----P----PSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 912 ~l~~~fg~----~----~~~~~n~~eava~Gaa~~aa 940 (1304)
+|.+.+.. . +..+.++..++=.|+++.|.
T Consensus 312 RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 312 RLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 99887731 1 22233555677778888775
No 82
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.01 E-value=2e-08 Score=116.14 Aligned_cols=224 Identities=19% Similarity=0.203 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHHHc---------CCceeeeechhHHHHHHhccccC
Q psy7140 675 QLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIA---------GLNVLRLINETTATALAYGIYKQ 745 (1304)
Q Consensus 675 el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~Aaal~y~~~~~ 745 (1304)
+..++++..|.... . ..+..+|+..|..+...+|+.+++..... -++.+.+++||.+|.+.|.....
T Consensus 85 ~~~~L~~~Al~~~~---~-~~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~ 160 (320)
T TIGR03739 85 EYMALLRGALALSK---V-REIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHG 160 (320)
T ss_pred HHHHHHHHHHHHhc---C-CCCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCC
Confidence 44555555443321 1 23557999999999999999999886532 23557789999999888765322
Q ss_pred CCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q psy7140 746 DLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRL 825 (1304)
Q Consensus 746 ~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL 825 (1304)
.. ......++|+|+|++|||+.++. ++.+ +...++....|-.++-+.|.+.+.+++ +.+...+...+.
T Consensus 161 ~~---~~~~~~~lVIDIG~~TtD~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~~i~-- 228 (320)
T TIGR03739 161 KL---LTGKEQSLIIDPGYFTFDWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDIDRID-- 228 (320)
T ss_pred Cc---ccCcCcEEEEecCCCeeeeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHHHHH--
Confidence 11 12456789999999999997763 4343 445555667898888888888776655 333111111111
Q ss_pred HHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCC
Q psy7140 826 LSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSR 905 (1304)
Q Consensus 826 ~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~sr 905 (1304)
..|..... +.+ .+..+ .|+ +.++ ..+..++++...+.+.+. ...+++.|+|+||++.
T Consensus 229 --------~~l~~g~~---~~~----~gk~~--di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~ 285 (320)
T TIGR03739 229 --------LALRTGKQ---PRI----YQKPV--DIK-RCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF 285 (320)
T ss_pred --------HHHHhCCc---eee----cceec--Cch-HHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH
Confidence 11221110 000 11111 122 1122 333444444444444332 1245889999999998
Q ss_pred ChhHHHHHHHHcCCC-CCCCCCchhHHHhHHHHHh
Q psy7140 906 IPAFKNVIESVFHKP-PSTTLNQDEAVSRGCALQC 939 (1304)
Q Consensus 906 ip~v~~~l~~~fg~~-~~~~~n~~eava~Gaa~~a 939 (1304)
.+++.|++.|+.. +....||..|.|+|-..++
T Consensus 286 --ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 286 --LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred --HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 5678999999763 4456799999999977665
No 83
>PTZ00281 actin; Provisional
Probab=98.98 E-value=6.1e-09 Score=123.07 Aligned_cols=218 Identities=11% Similarity=0.152 Sum_probs=138.2
Q ss_pred cceEEEeecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEE
Q psy7140 696 VHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 774 (1304)
Q Consensus 696 ~~~~VitVP~~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 774 (1304)
-..+++|-|..+...+|+.+.+. .+..+...+.+...+.+++++++. .+-+|||+|++.|.++-+.-
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------------~tglVVDiG~~~t~v~PV~d 168 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------------TTGIVMDSGDGVSHTVPIYE 168 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------------ceEEEEECCCceEEEEEEEe
Confidence 35788899999999999998774 577888888999999999877642 35789999999999875432
Q ss_pred ECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCcee-----------
Q psy7140 775 VKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKL----------- 843 (1304)
Q Consensus 775 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~----------- 843 (1304)
|. .+.......++||.++++.|.+.|...- ..... . . -...++.+|+.++--+...
T Consensus 169 --G~-~~~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~-~-~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (376)
T PTZ00281 169 --GY-ALPHAILRLDLAGRDLTDYMMKILTERG-----YSFTT-T-A---EREIVRDIKEKLAYVALDFEAEMQTAASSS 235 (376)
T ss_pred --cc-cchhheeeccCcHHHHHHHHHHHHHhcC-----CCCCc-H-H---HHHHHHHHHHhcEEecCCchHHHHhhhcCc
Confidence 21 2222233457999999999998875431 11111 0 1 1234667777765311000
Q ss_pred eeEEee-ecCCcceEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHhcCCCC--CceeEEEEecCCCCChhHHHH
Q psy7140 844 PLNIEC-FMDDKDVHAELKRNDL---ETLCEHIF-----GRIEICLNKCIAESKLPV--NAIHSIEIVGGSSRIPAFKNV 912 (1304)
Q Consensus 844 ~~~ie~-l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l~~~~~~~--~~I~~V~LvGG~srip~v~~~ 912 (1304)
...... +-++. .+.|..+.| |-++.|-+ ..+.+.|.+++..+..+. .-.+.|+|+||+|.+|.+.++
T Consensus 236 ~~~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 313 (376)
T PTZ00281 236 ALEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADR 313 (376)
T ss_pred ccceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHH
Confidence 001111 22233 345555544 33444422 245667777776654322 125789999999999999999
Q ss_pred HHHHcCC------C--CCCCCCchhHHHhHHHHHhh
Q psy7140 913 IESVFHK------P--PSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 913 l~~~fg~------~--~~~~~n~~eava~Gaa~~aa 940 (1304)
|+..+.. + +..+.++..++=+|+++.|.
T Consensus 314 L~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 314 MNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 9887731 1 23334666778888888775
No 84
>PTZ00452 actin; Provisional
Probab=98.96 E-value=9.1e-08 Score=112.75 Aligned_cols=215 Identities=12% Similarity=0.128 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHH-HHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCC
Q psy7140 146 QLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPEDDQN 224 (1304)
Q Consensus 146 el~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 224 (1304)
+.+..++.|+....- .....-..+++|-|...+..+|+.+.+.+ +..+++.+.+.+.|.+++++++.
T Consensus 80 d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~----------- 147 (375)
T PTZ00452 80 DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK----------- 147 (375)
T ss_pred HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-----------
Confidence 334456665532211 12223356899999999999999988875 55688888999999999877642
Q ss_pred CcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhh
Q psy7140 225 PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLK 304 (1304)
Q Consensus 225 ~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 304 (1304)
..-||||+|.|.+.++-+ .+|..--. ......+||.++++.|.+.|.. .+........ ...++.+|
T Consensus 148 -~tglVVDiG~~~t~v~PV--~dG~~l~~-~~~r~~~gG~~lt~~L~~lL~~-----~~~~~~~~~~-----~~~~~~iK 213 (375)
T PTZ00452 148 -TIGLVVDSGEGVTHCVPV--FEGHQIPQ-AITKINLAGRLCTDYLTQILQE-----LGYSLTEPHQ-----RIIVKNIK 213 (375)
T ss_pred -ceeeeecCCCCcceEEEE--ECCEEecc-ceEEeeccchHHHHHHHHHHHh-----cCCCCCCHHH-----HHHHHHHH
Confidence 245899999999998763 34543222 2234579999999999988742 1222111110 11234455
Q ss_pred hccccCCce-----------eeEEEee-ecCCcceEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCC--C
Q psy7140 305 KQMSANSNK-----------LPLNIEC-FMDDKDVHAELKRNDLETLCEHIFG---------RIEICLNKCIAESKL--P 361 (1304)
Q Consensus 305 ~~Ls~~~~~-----------~~~~i~~-~~~~~~~~~~itr~~fe~~~~~~~~---------~i~~~i~~~l~~~~~--~ 361 (1304)
+.++-.... ....... +-+|. .+++..+.| .+.+.+++ .+.+++.+++..... .
T Consensus 214 e~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~--~i~l~~er~-~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r 290 (375)
T PTZ00452 214 ERLCYTALDPQDEKRIYKESNSQDSPYKLPDGN--ILTIKSQKF-RCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLR 290 (375)
T ss_pred HHhccccCcHHHHHHHhhccCCcCceEECCCCC--EEEeehHHh-cCcccccChhhcCCCCCChhHHHHHHHHhCCHhHH
Confidence 554321100 0000111 11222 355666666 22332322 355666677665432 1
Q ss_pred CCcccEEEEEcCCCCchhHHHHHHHhcC
Q psy7140 362 VNAIHSIEIVGGSSRIPAFKNVIESVFH 389 (1304)
Q Consensus 362 ~~~i~~ViLvGG~sr~p~v~~~l~~~f~ 389 (1304)
..=...|+|+||+|.+|.+.+.|+..+.
T Consensus 291 ~~L~~nIvL~GG~Sl~~Gf~~RL~~El~ 318 (375)
T PTZ00452 291 QELCRNIVLSGGTTLFPGIANRLSNELT 318 (375)
T ss_pred HHhhccEEEecccccccCHHHHHHHHHH
Confidence 1224689999999999999999887763
No 85
>PTZ00004 actin-2; Provisional
Probab=98.95 E-value=1.7e-08 Score=119.60 Aligned_cols=218 Identities=10% Similarity=0.116 Sum_probs=137.6
Q ss_pred cceEEEeecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEE
Q psy7140 696 VHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 774 (1304)
Q Consensus 696 ~~~~VitVP~~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 774 (1304)
-..+++|-|..++..+|+.+.+. .+..|+..+.+..++.+++++++. .+-+|+|+|++.|+++-+.
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------------~tglVVDiG~~~t~v~pV~- 167 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPIY- 167 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------------ceEEEEECCCCcEEEEEEE-
Confidence 45678999999999999887665 467899999999999999887642 3568999999999988654
Q ss_pred ECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCcee-----------
Q psy7140 775 VKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKL----------- 843 (1304)
Q Consensus 775 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~----------- 843 (1304)
+|.. +.......++||.++++.|.+.+...- +..... . -...++.+|+.++--+.+.
T Consensus 168 -dG~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~---~~~~~~----~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (378)
T PTZ00004 168 -EGYS-LPHAIHRLDVAGRDLTEYMMKILHERG---TTFTTT----A---EKEIVRDIKEKLCYIALDFDEEMGNSAGSS 235 (378)
T ss_pred -CCEE-eecceeeecccHHHHHHHHHHHHHhcC---CCCCcH----H---HHHHHHHHhhcceeecCCHHHHHhhhhcCc
Confidence 2322 222333458999999999999885431 111111 1 1223566666654311000
Q ss_pred e-eEEee-ecCCcceEEEecHHHH---HHHHHHH------HHHHHHHHHHHHHhcCCCC--CceeEEEEecCCCCChhHH
Q psy7140 844 P-LNIEC-FMDDKDVHAELKRNDL---ETLCEHI------FGRIEICLNKCIAESKLPV--NAIHSIEIVGGSSRIPAFK 910 (1304)
Q Consensus 844 ~-~~ie~-l~~~~d~~~~itr~ef---e~l~~~~------~~~i~~~i~~~l~~~~~~~--~~I~~V~LvGG~srip~v~ 910 (1304)
. ..... +.++. .+.+..+.| |-++.|- ...+.++|.+++.++..+. .-...|+|+||+|.+|.+.
T Consensus 236 ~~~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~ 313 (378)
T PTZ00004 236 DKYEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLP 313 (378)
T ss_pred cccceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHH
Confidence 0 01111 22333 234555554 2344442 2346677777777664332 2257899999999999999
Q ss_pred HHHHHHcCC----C----CCCCCCchhHHHhHHHHHhh
Q psy7140 911 NVIESVFHK----P----PSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 911 ~~l~~~fg~----~----~~~~~n~~eava~Gaa~~aa 940 (1304)
++|...+.. . +..+.++..++=+||++.|.
T Consensus 314 ~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 314 ERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 999887731 1 22334566677778777765
No 86
>PTZ00004 actin-2; Provisional
Probab=98.95 E-value=2.3e-08 Score=118.45 Aligned_cols=218 Identities=9% Similarity=0.092 Sum_probs=131.1
Q ss_pred cceEEEeecCCCCHHHHHHHHHHH-HHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEE
Q psy7140 167 VHDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 245 (1304)
Q Consensus 167 ~~~~vitVPa~~~~~qr~~l~~A~-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 245 (1304)
-..+++|-|...+..+|+.+.+.+ +..|++.+.++.+|.+|+++++. ..-+|+|+|.+.++++-+
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------------~tglVVDiG~~~t~v~pV-- 166 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPI-- 166 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------------ceEEEEECCCCcEEEEEE--
Confidence 346789999999999998877765 56799999999999999987642 235899999999998764
Q ss_pred ECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCc-----------e-
Q psy7140 246 VKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN-----------K- 313 (1304)
Q Consensus 246 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----------~- 313 (1304)
.+|..-. ......++||+++++.|.+.+..+ .+...... -...++..|+.++-... .
T Consensus 167 ~dG~~l~-~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~~-------~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (378)
T PTZ00004 167 YEGYSLP-HAIHRLDVAGRDLTEYMMKILHER---GTTFTTTA-------EKEIVRDIKEKLCYIALDFDEEMGNSAGSS 235 (378)
T ss_pred ECCEEee-cceeeecccHHHHHHHHHHHHHhc---CCCCCcHH-------HHHHHHHHhhcceeecCCHHHHHhhhhcCc
Confidence 3454322 223355899999999999987432 11111111 11234555555432110 0
Q ss_pred eeEEEeeec-CCcceEEEEcHHHHH---HHHHHH------HHHHHHHHHHHHHhCCCC--CCcccEEEEEcCCCCchhHH
Q psy7140 314 LPLNIECFM-DDKDVHAELKRNDLE---TLCEHI------FGRIEICLNKCIAESKLP--VNAIHSIEIVGGSSRIPAFK 381 (1304)
Q Consensus 314 ~~~~i~~~~-~~~~~~~~itr~~fe---~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~sr~p~v~ 381 (1304)
......... +|. .+.+..+.|. -++.|- ...+.++|.+++.+...+ ..=...|+|+||+|.+|.+.
T Consensus 236 ~~~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~ 313 (378)
T PTZ00004 236 DKYEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLP 313 (378)
T ss_pred cccceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHH
Confidence 000111112 232 3445555542 133331 224566777777655322 11246899999999999999
Q ss_pred HHHHHhcCCC--------CCCCCCchhHHHHHHHHHhh
Q psy7140 382 NVIESVFHKP--------PSTTLNQDEAVSRGCALQCA 411 (1304)
Q Consensus 382 ~~l~~~f~~~--------~~~~~np~eaVa~Gaa~~aa 411 (1304)
+.|...+... +....++..++=+||++.|.
T Consensus 314 ~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 314 ERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9988776411 12233455555566666654
No 87
>PTZ00466 actin-like protein; Provisional
Probab=98.94 E-value=4.3e-08 Score=115.56 Aligned_cols=217 Identities=12% Similarity=0.144 Sum_probs=130.8
Q ss_pred cceEEEeecCCCCHHHHHHHHHHH-HHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEE
Q psy7140 167 VHDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 245 (1304)
Q Consensus 167 ~~~~vitVPa~~~~~qr~~l~~A~-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 245 (1304)
-..+++|-|..++..+|+.+.+.+ +..|++.+.+.+.|.+|+++++. ..-+|||+|.+.+.++-+
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------------~tglVVD~G~~~t~v~PV-- 171 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK------------TNGTVLDCGDGVCHCVSI-- 171 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------------ceEEEEeCCCCceEEEEE--
Confidence 346788999999999999987765 56788889999999999977642 245899999999988653
Q ss_pred ECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCc----------eee
Q psy7140 246 VKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN----------KLP 315 (1304)
Q Consensus 246 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----------~~~ 315 (1304)
.+|..- ........+||+++++.|.+.+.+ .+..... .. -+..++.+|+.++-... ...
T Consensus 172 ~~G~~~-~~~~~~~~~GG~~lt~~L~~lL~~-----~~~~~~~--~~---~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~ 240 (380)
T PTZ00466 172 YEGYSI-TNTITRTDVAGRDITTYLGYLLRK-----NGHLFNT--SA---EMEVVKNMKENCCYVSFNMNKEKNSSEKAL 240 (380)
T ss_pred ECCEEe-ecceeEecCchhHHHHHHHHHHHh-----cCCCCCc--HH---HHHHHHHHHHhCeEecCChHHHHhhccccc
Confidence 345332 222234589999999999988742 1111111 11 12234455555432100 000
Q ss_pred EEEeeec-CCcceEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCCC--CCcccEEEEEcCCCCchhHHHH
Q psy7140 316 LNIECFM-DDKDVHAELKRNDLETLCEHIFG---------RIEICLNKCIAESKLP--VNAIHSIEIVGGSSRIPAFKNV 383 (1304)
Q Consensus 316 ~~i~~~~-~~~~~~~~itr~~fe~~~~~~~~---------~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~sr~p~v~~~ 383 (1304)
....... +| ..+.+..+.|. +.+.+++ .+.++|.+++.+...+ ..=...|+|+||+|.+|.+.+.
T Consensus 241 ~~~~y~LPdg--~~i~l~~er~~-~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~R 317 (380)
T PTZ00466 241 TTLPYILPDG--SQILIGSERYR-APEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDR 317 (380)
T ss_pred cceeEECCCC--cEEEEchHHhc-CcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHH
Confidence 0111111 22 23556666553 2333332 3556666666654322 1124689999999999999999
Q ss_pred HHHhcCCC--------CCCCCCchhHHHHHHHHHhh
Q psy7140 384 IESVFHKP--------PSTTLNQDEAVSRGCALQCA 411 (1304)
Q Consensus 384 l~~~f~~~--------~~~~~np~eaVa~Gaa~~aa 411 (1304)
|+..+..- +....++..++=+|++++|.
T Consensus 318 L~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 318 LLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 98777411 12223444555566666654
No 88
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.88 E-value=5.4e-08 Score=114.64 Aligned_cols=185 Identities=16% Similarity=0.188 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCC
Q psy7140 180 NNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDS 259 (1304)
Q Consensus 180 ~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 259 (1304)
....+.+.++++.||+++..+..+|.|.+-.+.+-...+.........++++|+|++|++++++ .+|.+.... ..
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~--~~g~~~~~r---~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLL--HPGRMLFTR---EV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEE--ECCeEEEEE---Ee
Confidence 4557788999999999999999999998776642111111111122248899999999999995 456555443 44
Q ss_pred CcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEeeecCCcceEEEEcHHHHHHH
Q psy7140 260 EIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETL 339 (1304)
Q Consensus 260 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~~~~~~~~~~~itr~~fe~~ 339 (1304)
.+||.+|++.|.+.+ +++ +..||+.|..-..... .. .++
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~~------------------~~----~~~ 255 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPLL------------------YD----PEV 255 (348)
T ss_pred echHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCCc------------------hh----HHH
Confidence 899999999887543 222 3567888765332110 00 134
Q ss_pred HHHHHHHHHHHHHHHHHh--CCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCC-------------------CCCc
Q psy7140 340 CEHIFGRIEICLNKCIAE--SKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPST-------------------TLNQ 398 (1304)
Q Consensus 340 ~~~~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~-------------------~~np 398 (1304)
+++.++++...|.+.|+- .......++.|+|+||+++++.+.+.+++.||.++.. ..+|
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAP 335 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhhhH
Confidence 455555555555555532 1223446899999999999999999999999843321 1345
Q ss_pred hhHHHHHHHHHh
Q psy7140 399 DEAVSRGCALQC 410 (1304)
Q Consensus 399 ~eaVa~Gaa~~a 410 (1304)
..++|.|+|+++
T Consensus 336 ~~~~a~Glalr~ 347 (348)
T TIGR01175 336 ALMTALGLALRG 347 (348)
T ss_pred HHHHHhhHhhcC
Confidence 678888888864
No 89
>PTZ00466 actin-like protein; Provisional
Probab=98.86 E-value=9.8e-08 Score=112.58 Aligned_cols=218 Identities=11% Similarity=0.153 Sum_probs=136.3
Q ss_pred cceEEEeecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEE
Q psy7140 696 VHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 774 (1304)
Q Consensus 696 ~~~~VitVP~~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 774 (1304)
-..+++|-|..++..+|+.+.+. .+..+...+.+.+.+.+++++++. .+-+|||+|.+.|.++-+.
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------------~tglVVD~G~~~t~v~PV~- 172 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK------------TNGTVLDCGDGVCHCVSIY- 172 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------------ceEEEEeCCCCceEEEEEE-
Confidence 35688899999999999998665 466788888999999999877652 3578999999999987553
Q ss_pred ECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCce----------ee
Q psy7140 775 VKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNK----------LP 844 (1304)
Q Consensus 775 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~----------~~ 844 (1304)
+|.. +.......++||.++++-|.+.+.+. .+..+. . .-+..++.+|+.++--... ..
T Consensus 173 -~G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~----~---~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~ 240 (380)
T PTZ00466 173 -EGYS-ITNTITRTDVAGRDITTYLGYLLRKN---GHLFNT----S---AEMEVVKNMKENCCYVSFNMNKEKNSSEKAL 240 (380)
T ss_pred -CCEE-eecceeEecCchhHHHHHHHHHHHhc---CCCCCc----H---HHHHHHHHHHHhCeEecCChHHHHhhccccc
Confidence 3322 22223345899999999999887532 111111 1 1123456677766421100 00
Q ss_pred eEEee-ecCCcceEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHhcCCCC--CceeEEEEecCCCCChhHHHHH
Q psy7140 845 LNIEC-FMDDKDVHAELKRNDL---ETLCEHIF-----GRIEICLNKCIAESKLPV--NAIHSIEIVGGSSRIPAFKNVI 913 (1304)
Q Consensus 845 ~~ie~-l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l~~~~~~~--~~I~~V~LvGG~srip~v~~~l 913 (1304)
..... +.++. .+.+..+.| |-++.|-+ ..+.+.|.+++..+..+. .-...|+|+||+|.+|.+.++|
T Consensus 241 ~~~~y~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL 318 (380)
T PTZ00466 241 TTLPYILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRL 318 (380)
T ss_pred cceeEECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHH
Confidence 00111 12332 345666555 23343321 245667777776654332 2257899999999999999999
Q ss_pred HHHcCC----C----CCCCCCchhHHHhHHHHHhh
Q psy7140 914 ESVFHK----P----PSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 914 ~~~fg~----~----~~~~~n~~eava~Gaa~~aa 940 (1304)
+..+.. . +....++..++=+|+++.|.
T Consensus 319 ~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 319 LNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 988732 1 22334556667778887775
No 90
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.77 E-value=1.1e-07 Score=111.09 Aligned_cols=183 Identities=22% Similarity=0.315 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCC
Q psy7140 181 NERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSE 260 (1304)
Q Consensus 181 ~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 260 (1304)
...+...++++.||++...+=-+|.|.+-.|.......+.. .....++++|+|+.++.+++ +.+|.+... +...
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~-~~~~~~~lvdiG~~~t~~~i--~~~g~~~f~---R~i~ 209 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDE-EDAETVALVDIGASSTTVII--FQNGKPIFS---RSIP 209 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST-----T-EEEEEEE-SS-EEEEE--EETTEEEEE---EEES
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcc-cccceEEEEEecCCeEEEEE--EECCEEEEE---EEEe
Confidence 44677888999999999888777777665554432222221 23457899999999999998 445665543 3448
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEeeecCCcceEEEEcHHHHHHHH
Q psy7140 261 IGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLC 340 (1304)
Q Consensus 261 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~ 340 (1304)
+||.++++.|++.+.-. ..+||+.|..-+. +. +...+.+
T Consensus 210 ~G~~~l~~~i~~~~~i~-------------------~~~Ae~~k~~~~l-~~---------------------~~~~~~l 248 (340)
T PF11104_consen 210 IGGNDLTEAIARELGID-------------------FEEAEELKRSGGL-PE---------------------EYDQDAL 248 (340)
T ss_dssp -SHHHHHHHHHHHTT---------------------HHHHHHHHHHT----------------------------HHHHH
T ss_pred eCHHHHHHHHHHhcCCC-------------------HHHHHHHHhcCCC-Cc---------------------chHHHHH
Confidence 99999999999764211 2456666654221 00 2223445
Q ss_pred HHHHHHHHHHHHHHHH--hCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCC---------CCC----------Cch
Q psy7140 341 EHIFGRIEICLNKCIA--ESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPS---------TTL----------NQD 399 (1304)
Q Consensus 341 ~~~~~~i~~~i~~~l~--~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~---------~~~----------np~ 399 (1304)
.+.++++...|++.++ .+......|+.|+|+||++++|.+.+.|++.++.++. .+. .|.
T Consensus 249 ~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 328 (340)
T PF11104_consen 249 RPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQ 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhH
Confidence 5555555555555554 2223455799999999999999999999999984321 111 366
Q ss_pred hHHHHHHHHHh
Q psy7140 400 EAVSRGCALQC 410 (1304)
Q Consensus 400 eaVa~Gaa~~a 410 (1304)
.++|.|+|+..
T Consensus 329 ~avA~GLAlR~ 339 (340)
T PF11104_consen 329 FAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 78999999864
No 91
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.71 E-value=2.4e-06 Score=93.03 Aligned_cols=162 Identities=15% Similarity=0.223 Sum_probs=108.9
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCC
Q psy7140 712 RKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIG 791 (1304)
Q Consensus 712 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lG 791 (1304)
-+...+|++.|||....+=-|..|.--+|.+--+.+. .......++|+|+|+.++.+.++.-.. .-+..+..+|
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~-~~~a~~~vav~~Igat~s~l~vi~~gk-----~ly~r~~~~g 224 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFG-PEEAAMKVAVFDIGATSSELLVIQDGK-----ILYTREVPVG 224 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhC-CchhhhhheeeeecccceEEEEEECCe-----eeeEeeccCc
Confidence 4556789999999998887888887777752222221 112233479999999999999976443 2334577899
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHH
Q psy7140 792 GRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEH 871 (1304)
Q Consensus 792 G~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~ 871 (1304)
|++++..+...+ +.+. ..++.+|....... +-=.++..+
T Consensus 225 ~~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~~P~----------------------~y~~~vl~~ 263 (354)
T COG4972 225 TDQLTQEIQRAY--------SLTE-----------EKAEEIKRGGTLPT----------------------DYGSEVLRP 263 (354)
T ss_pred HHHHHHHHHHHh--------CCCh-----------hHhHHHHhCCCCCC----------------------chhHHHHHH
Confidence 999999886654 3332 34566665554321 111344556
Q ss_pred HHHHHHHHHHHHHHh--cCCCCCceeEEEEecCCCCChhHHHHHHHHcCCC
Q psy7140 872 IFGRIEICLNKCIAE--SKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 920 (1304)
Q Consensus 872 ~~~~i~~~i~~~l~~--~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~ 920 (1304)
+++.+...|.+.|+- +.-...+|+.|+|.||++++-.+.+++.+.++.+
T Consensus 264 f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 264 FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 666666666666551 2224568999999999999999999999998754
No 92
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.63 E-value=1e-06 Score=101.57 Aligned_cols=170 Identities=16% Similarity=0.208 Sum_probs=98.2
Q ss_pred CeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHH
Q psy7140 196 NVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYIS 275 (1304)
Q Consensus 196 ~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 275 (1304)
..+.+++||.||.+.+...- .+...+||+|+||+|+|++++. ++.-.+....+...+|-..+-..+.+.+.
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~-------~~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~ 211 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL-------DEDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALR 211 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS--------TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT
T ss_pred eeEEEEcccHHHHHHHHHhh-------cccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHH
Confidence 46788999999999886542 1234689999999999999875 22222334445668999888888887764
Q ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHhhh---ccccCCceeeEEEeeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy7140 276 TDFVKRYKIDPRTNARAYIRLLSEIEKLKK---QMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLN 352 (1304)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~---~Ls~~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~ 352 (1304)
.. +... +.. ..+.+-+.+. .++.. .... =..+++.+.++..++++.+.+.
T Consensus 212 ~~-----~~~~--s~~----~~~~ii~~~~~~~~~~~~-----------i~~~-----~~~~~v~~~i~~~~~~l~~~i~ 264 (318)
T PF06406_consen 212 SA-----GIDT--SEL----QIDDIIRNRKDKGYLRQV-----------INDE-----DVIDDVSEVIEEAVEELINRIL 264 (318)
T ss_dssp -------SBHH--HHH----HHHHHHHTTT-HHHHHHH-----------SSSH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-----cCCC--cHH----HHHHHHHhhhccceeccc-----------ccch-----hhHHHHHHHHHHHHHHHHHHHH
Confidence 31 1000 000 0111111111 01100 0000 0134555556666666665555
Q ss_pred HHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCC---CCCCCCCchhHHHHHHH
Q psy7140 353 KCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHK---PPSTTLNQDEAVSRGCA 407 (1304)
Q Consensus 353 ~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~---~~~~~~np~eaVa~Gaa 407 (1304)
+.+.+ ..+++.|+||||++ ..+.+.|++.|+. .....-||+.|-|+|-+
T Consensus 265 ~~~~~----~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 265 RELGD----FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHTT----S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHhh----hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 55543 34678999999998 5678899999872 45667899999999954
No 93
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.61 E-value=8.9e-07 Score=102.04 Aligned_cols=173 Identities=18% Similarity=0.219 Sum_probs=97.4
Q ss_pred ceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHH
Q psy7140 725 NVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYIS 804 (1304)
Q Consensus 725 ~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 804 (1304)
..+.+++|+.||.+.+... + .+...+||+|+||+|+|++++. ++.-.+-...+...+|-..+-..+.+.+.
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~---~----~~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~ 211 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMD---L----DEDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALR 211 (318)
T ss_dssp EEEEEEESSHHHHHHHHHT---S-----TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT
T ss_pred eeEEEEcccHHHHHHHHHh---h----cccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHH
Confidence 4667899999999887543 1 2345799999999999999885 22222334445668999888888877765
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHH
Q psy7140 805 TDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCI 884 (1304)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l 884 (1304)
... .. .+.....++.+. .+-+..++. ...+.+ .++++.+.++..++++.+-|.+.+
T Consensus 212 ~~~-----~~--~s~~~~~~ii~~-~~~~~~~~~-----------~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~ 267 (318)
T PF06406_consen 212 SAG-----ID--TSELQIDDIIRN-RKDKGYLRQ-----------VINDED-----VIDDVSEVIEEAVEELINRILREL 267 (318)
T ss_dssp --S-----BH--HHHHHHHHHHHT-TT-HHHHHH-----------HSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-----CC--CcHHHHHHHHHh-hhccceecc-----------cccchh-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 411 00 000001111110 000011110 000000 134445555555555555555555
Q ss_pred HhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCC---CCCCCCCchhHHHhHHH
Q psy7140 885 AESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHK---PPSTTLNQDEAVSRGCA 936 (1304)
Q Consensus 885 ~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~---~~~~~~n~~eava~Gaa 936 (1304)
.. ..+++.|+|+||++. .+.+.|++.|+. .+...-||..|-|+|-+
T Consensus 268 ~~----~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 268 GD----FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp TT----S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred hh----hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 32 346789999999984 567899999873 46677899999999954
No 94
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.60 E-value=4.2e-06 Score=91.08 Aligned_cols=163 Identities=17% Similarity=0.244 Sum_probs=106.2
Q ss_pred HHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcc
Q psy7140 183 RKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIG 262 (1304)
Q Consensus 183 r~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lG 262 (1304)
.....+|++.|||+..-+=-|..|.--+|..--..+... .....|+|+|+|+..+.++++.- +..- ...+..+|
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~-~a~~~vav~~Igat~s~l~vi~~--gk~l---y~r~~~~g 224 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPE-EAAMKVAVFDIGATSSELLVIQD--GKIL---YTREVPVG 224 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCc-hhhhhheeeeecccceEEEEEEC--Ceee---eEeeccCc
Confidence 455678899999999888888888877776332222111 12234789999999999998664 3322 22467899
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEEeeecCCcceEEEEcHHHHHHHHHH
Q psy7140 263 GRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEH 342 (1304)
Q Consensus 263 G~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~ 342 (1304)
|+++++.|.+.+ +++. ..++.+|.....-. ++. -+-+......
T Consensus 225 ~~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~~P~--------------~y~----~~vl~~f~~~ 267 (354)
T COG4972 225 TDQLTQEIQRAY--------SLTE-----------EKAEEIKRGGTLPT--------------DYG----SEVLRPFLGE 267 (354)
T ss_pred HHHHHHHHHHHh--------CCCh-----------hHhHHHHhCCCCCC--------------chh----HHHHHHHHHH
Confidence 999999988553 3332 34566676544321 010 1122223334
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCC
Q psy7140 343 IFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHK 390 (1304)
Q Consensus 343 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~ 390 (1304)
++++|...|+-.+...+ -.+|+.|+|.||++++-.+.+.+.+.++.
T Consensus 268 l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~ 313 (354)
T COG4972 268 LTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSI 313 (354)
T ss_pred HHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCC
Confidence 44444444444444443 45799999999999999999999999873
No 95
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.60 E-value=1.1e-06 Score=97.60 Aligned_cols=170 Identities=16% Similarity=0.197 Sum_probs=104.1
Q ss_pred eeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q psy7140 728 RLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDF 807 (1304)
Q Consensus 728 ~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~ 807 (1304)
..++|.+|-+........ ..=.|+|+||..+.+..++ ++++.-.........|+-.|.+.+++.+.
T Consensus 73 ~~~~ei~~~~~g~~~~~~---------~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~--- 138 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP---------EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLG--- 138 (248)
T ss_pred CceEEhhHHHHHHHHHCC---------CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcC---
Confidence 357788876654422211 1124899999988888776 56554334444556788888888877653
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHHHhccC---CceeeeEEeee-cCCcceEEEecHHHHHHHHHHHHHHHHHHHHHH
Q psy7140 808 VKRYKIDPRTNARAYIRLLSEIEKLKKQMSAN---SNKLPLNIECF-MDDKDVHAELKRNDLETLCEHIFGRIEICLNKC 883 (1304)
Q Consensus 808 ~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~---~~~~~~~ie~l-~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~ 883 (1304)
+++ ++++.++..-... +....+..+.- ... +....++ ++++..+++.+...+.+.
T Consensus 139 -----~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~ 197 (248)
T TIGR00241 139 -----VSV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEM 197 (248)
T ss_pred -----CCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHH
Confidence 221 2333333321110 00111111100 000 0001222 456666666666666666
Q ss_pred HHhcCCCCCcee-EEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHH
Q psy7140 884 IAESKLPVNAIH-SIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCAL 937 (1304)
Q Consensus 884 l~~~~~~~~~I~-~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~ 937 (1304)
+...+ ++ .|+++||.++.|.+.+.+++.++.++..+.+|..+.|+|||+
T Consensus 198 ~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 198 LQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred HhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 65443 34 799999999999999999999999999999999999999997
No 96
>KOG0679|consensus
Probab=98.59 E-value=3.5e-06 Score=92.87 Aligned_cols=116 Identities=17% Similarity=0.213 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHH-HHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCC
Q psy7140 146 QLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPEDDQN 224 (1304)
Q Consensus 146 el~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 224 (1304)
|+..++++|..+.-- +....-.-++||-|++=+.+.|+.+.+.+ +...++...|..+|+++|++-|
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G------------ 152 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG------------ 152 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC------------
Confidence 456666766653221 12222345899999988889998887765 6667788888999999888764
Q ss_pred CcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHH
Q psy7140 225 PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTD 277 (1304)
Q Consensus 225 ~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 277 (1304)
...-||+|+|++++.++- +.+|.+--.+.. -.++||+-++..+.+.|..+
T Consensus 153 rstalVvDiGa~~~svsP--V~DG~Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 153 RSTALVVDIGATHTSVSP--VHDGYVLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred CCceEEEEecCCCceeee--eecceEeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 124689999999998876 455655444444 66999999999999988664
No 97
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.48 E-value=8.3e-07 Score=102.61 Aligned_cols=194 Identities=14% Similarity=0.122 Sum_probs=106.0
Q ss_pred cceEEEeecCCCCHHHHHHHHHHHH--------HcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeE
Q psy7140 167 VHDCVLAVPSYFTNNERKALLTAAS--------IAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSAL 238 (1304)
Q Consensus 167 ~~~~vitVPa~~~~~qr~~l~~A~~--------~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~ 238 (1304)
..-.+||.++..-.+-++.+..+.. .||+++..++. |.|++.+.... ++...++++|+||||+
T Consensus 88 ~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse--------Eke~gVa~IDIGgGTT 158 (475)
T PRK10719 88 SGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE--------ERNTRVLNIDIGGGTA 158 (475)
T ss_pred ccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh--------hccCceEEEEeCCCce
Confidence 3346777776655444444443221 26777766666 88888766422 2456799999999999
Q ss_pred EEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCceeeEEE
Q psy7140 239 QVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNI 318 (1304)
Q Consensus 239 dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~i 318 (1304)
+++++. +|.+.... ..++||++++.. -+. .+ ....+ ...++.+ ++-..++.
T Consensus 159 ~iaVf~--~G~l~~T~---~l~vGG~~IT~D-~~~---------~i-~yis~-~~~~l~~---~~~~~~~~--------- 209 (475)
T PRK10719 159 NYALFD--AGKVIDTA---CLNVGGRLIETD-SQG---------RV-TYISP-PGQMILD---ELGLAITD--------- 209 (475)
T ss_pred EEEEEE--CCEEEEEE---EEecccceEEEC-CCC---------CE-EEECh-HHHHHHH---HcCCCccc---------
Confidence 999954 56554443 458999987643 110 00 00111 1112211 11111111
Q ss_pred eeecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHH--------HHHhCCCC-CCcccEEEEEcCCCCchhHHHHHHHhcC
Q psy7140 319 ECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNK--------CIAESKLP-VNAIHSIEIVGGSSRIPAFKNVIESVFH 389 (1304)
Q Consensus 319 ~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~--------~l~~~~~~-~~~i~~ViLvGG~sr~p~v~~~l~~~f~ 389 (1304)
--.++.+++..+|+.+.+-+.+.+.. ++....++ ...++.|.+.||-+..-+-+
T Consensus 210 ---------G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~iy~~-------- 272 (475)
T PRK10719 210 ---------GRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDCIYRH-------- 272 (475)
T ss_pred ---------cccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhheecC--------
Confidence 11356788888887777666655541 11111232 35689999999987543211
Q ss_pred CCCCCCCCchhHHHHHHHHHhhHhcC
Q psy7140 390 KPPSTTLNQDEAVSRGCALQCAILSP 415 (1304)
Q Consensus 390 ~~~~~~~np~eaVa~Gaa~~aa~ls~ 415 (1304)
......-.-|--+-+|.|+.....-.
T Consensus 273 ~~~~~f~yGDiG~lLg~ai~~~~~~~ 298 (475)
T PRK10719 273 QPADPFRYGDIGPLLATALHEHPRLR 298 (475)
T ss_pred CcCCccccCcHHHHHHHHHhhChhcc
Confidence 11111223455666777776554433
No 98
>KOG0679|consensus
Probab=98.42 E-value=1.4e-05 Score=88.16 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCCCCCC
Q psy7140 675 QLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQN 753 (1304)
Q Consensus 675 el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 753 (1304)
+++.++.+|..+.-- .....-.-++||-|++=+.+.|+.+.+. .+........|..+++++|++.|.
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr----------- 153 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR----------- 153 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC-----------
Confidence 455666666654221 1222234689999999889999887765 467777888889999988887652
Q ss_pred CcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q psy7140 754 PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTD 806 (1304)
Q Consensus 754 ~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 806 (1304)
.+-||+|+|+++|.++-+. +|-+--.+.. -..+||+.++..+.+.|...
T Consensus 154 -stalVvDiGa~~~svsPV~--DG~Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 154 -STALVVDIGATHTSVSPVH--DGYVLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred -CceEEEEecCCCceeeeee--cceEeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 3589999999999988654 3433333333 45899999999999999775
No 99
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.24 E-value=0.00015 Score=91.06 Aligned_cols=342 Identities=16% Similarity=0.208 Sum_probs=187.8
Q ss_pred EcHhHHHhhhh----CCCcccccchhhcCCCCCChhHHHHhhcCCccccccCCCCccccccCCCchhhhhhccCcccccc
Q psy7140 48 LGVAAKNQTVT----NVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLK 123 (1304)
Q Consensus 48 vG~~A~~~~~~----~~~~~i~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1304)
||.+|...... .....+++.||+|=.... ....|.|........ ..|. ....|+....
T Consensus 332 VG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~------~~q~WRFn~~~~~~~--------~eP~----ata~p~~~li 393 (1002)
T PF07520_consen 332 VGPEAARLASQRRGTEGSTGLSSPKRYLWDERP------YEQGWRFNSAYVKSQ--------NEPL----ATAAPFTNLI 393 (1002)
T ss_pred ecHHHHHHHHHhcCCccccCCCCchhhccCCCc------cCCCcccCCCCCCCc--------cCch----hhhHHHHHhh
Confidence 79888766553 355678889998832211 112344432111000 0000 1112233333
Q ss_pred CCCCceeEEEE-ec----CCceEeCHHHHHHHHHHHHHHHHHhhhcC--------------ccceEEEeecCCCCHHHHH
Q psy7140 124 QNDGSIGIKVN-YL----NKEHVFSPEQLTAMLFTKLKDISENEIQN--------------KVHDCVLAVPSYFTNNERK 184 (1304)
Q Consensus 124 ~~~~~~~~~v~-~~----~~~~~~~~~el~~~~L~~lk~~a~~~~~~--------------~~~~~vitVPa~~~~~qr~ 184 (1304)
.++|.+.+.+. .. .....+|=.-+++++|..|..+|--+++. ..+.+++|||.--.-.+|+
T Consensus 394 N~~G~~L~~l~~~~~r~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ 473 (1002)
T PF07520_consen 394 NDDGQPLYQLDPEDERLPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPERE 473 (1002)
T ss_pred cccCcchhhhcCccccCccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHH
Confidence 44555544431 11 11234566778888888887777655542 2567999999999999999
Q ss_pred HHHHHHHHc--------CCC---------------------eEEeechhHHHHHHhhh------------------hcCC
Q psy7140 185 ALLTAASIA--------GLN---------------------VLRLINETTATALAYGI------------------YKQD 217 (1304)
Q Consensus 185 ~l~~A~~~A--------Gl~---------------------~~~li~Ep~AAal~y~~------------------~~~~ 217 (1304)
.++++++.| |.. +..=-+|.||.=+-|.+ .+..
T Consensus 474 ifr~r~~~Ai~LvWk~lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~ 553 (1002)
T PF07520_consen 474 IFRRRMEEAIGLVWKALGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPD 553 (1002)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCC
Confidence 888887765 421 11123666665444422 1111
Q ss_pred CC----CCCCCCcEEEEEEecCCeEEEEEEEEE--C--C-eEEEEE---EecCCCcccHHHHHHHH-HHHHHHHHHH---
Q psy7140 218 LP----EDDQNPRYVAFVDFGYSALQVCIAAFV--K--G-KLKVLS---NVCDSEIGGRNIDKILA-EYISTDFVKR--- 281 (1304)
Q Consensus 218 ~~----~~~~~~~~vlV~D~GggT~dvsv~~~~--~--~-~~~v~~---~~~~~~lGG~~~D~~l~-~~l~~~~~~~--- 281 (1304)
.. ....+.-.|.-+|+||||||+.|-.+. + | ...+.- ..-+-.+.|+||-..+. .++...+.+.
T Consensus 554 ~~~~~~~~~~~slriASIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~ 633 (1002)
T PF07520_consen 554 RQPAPGEDPGPSLRIASIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKK 633 (1002)
T ss_pred ccccccCCCCCceEEEEEecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 11 112234568889999999999998887 2 2 122111 11245688999887655 4444433322
Q ss_pred cCC-------------CCCCCHH--------------HHHHHHHHHHHhhhccccCCceeeEEEeee-------------
Q psy7140 282 YKI-------------DPRTNAR--------------AYIRLLSEIEKLKKQMSANSNKLPLNIECF------------- 321 (1304)
Q Consensus 282 ~~~-------------~~~~~~~--------------~~~~L~~~~e~~K~~Ls~~~~~~~~~i~~~------------- 321 (1304)
.|+ +-..... ...+++.+||..-..-..... ...+..+
T Consensus 634 aG~~~~~~ll~~LfG~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~--~~~f~ell~~~~Pt~~vl~y 711 (1002)
T PF07520_consen 634 AGVADPRALLSRLFGGDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEI--DATFGELLEREPPTAAVLDY 711 (1002)
T ss_pred hcccCHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccc--cccHHHhcCCcCCcHHHHHH
Confidence 222 1111000 112255556653321000000 0000000
Q ss_pred --------------cCCcceEEEEcHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHH
Q psy7140 322 --------------MDDKDVHAELKRNDLETLCE---HIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVI 384 (1304)
Q Consensus 322 --------------~~~~~~~~~itr~~fe~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l 384 (1304)
++=.+..+.|+..++...+- -.+.+....+.+++...+ -|.++|+|--||+|.||..+
T Consensus 712 i~~~~~~~~~~~~~Fdildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalf 786 (1002)
T PF07520_consen 712 INEEVRRLPAGAPDFDILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALF 786 (1002)
T ss_pred HHHHHhhcCCCCCCcceecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHH
Confidence 11124567899999888664 345555555555554443 36799999999999999999
Q ss_pred HHhcCCCCC--------------------CCCCchhHHHHHHHHHhhHhc
Q psy7140 385 ESVFHKPPS--------------------TTLNQDEAVSRGCALQCAILS 414 (1304)
Q Consensus 385 ~~~f~~~~~--------------------~~~np~eaVa~Gaa~~aa~ls 414 (1304)
++..+.++. +--||-..||.||.+++....
T Consensus 787 r~~~pvPp~RIv~l~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 787 RHLLPVPPDRIVPLHGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred HHhCCCCcccEEecCCeeecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 999874432 224999999999988765433
No 100
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.23 E-value=9.3e-05 Score=81.87 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=42.2
Q ss_pred cEEEEEcCCCCchhHHHHHHHhcCCCCC-CCCCchhHHHHHHHHHhhH
Q psy7140 366 HSIEIVGGSSRIPAFKNVIESVFHKPPS-TTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 366 ~~ViLvGG~sr~p~v~~~l~~~f~~~~~-~~~np~eaVa~Gaa~~aa~ 412 (1304)
+.|+|+||.++.|.+++.+++.++.++. .+.+|+.+.|+|||++|.-
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999998776 5778999999999999864
No 101
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.21 E-value=6.1e-05 Score=89.42 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=69.8
Q ss_pred cceEEEeecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEE
Q psy7140 696 VHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 774 (1304)
Q Consensus 696 ~~~~VitVP~~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 774 (1304)
-..+++|-|..+....|+.+.+. .+...+..+.+..++.+++.+.+. . ..+.+|+|+|.+.|+++=+--
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~--~--------~~~g~ViD~G~~~t~v~PV~D 175 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGS--S--------DETGLVIDSGDSVTHVIPVVD 175 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCC--C--------CCceEEEEcCCCceeeEeeec
Confidence 34799999999999999887665 456666666666666666655542 1 146899999999999885532
Q ss_pred ECCeEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q psy7140 775 VKGKLKVLSNVCDSEIGGRNIDKILAEYISTD 806 (1304)
Q Consensus 775 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 806 (1304)
| +.+........+||++++..|.+.|...
T Consensus 176 --G-~~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 176 --G-IVLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred --c-ccccccceeeecCcHHHHHHHHHHHhhc
Confidence 1 2222333345799999999999988774
No 102
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.20 E-value=4.5e-05 Score=90.49 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=68.5
Q ss_pred ceEEEeecCCCCHHHHHHHHHHH-HHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEE
Q psy7140 168 HDCVLAVPSYFTNNERKALLTAA-SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFV 246 (1304)
Q Consensus 168 ~~~vitVPa~~~~~qr~~l~~A~-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~ 246 (1304)
..+++|-|..+....|+.+.+.+ +...++.+.+..++.+++.+.+. . ....+|+|+|.+.|+++=+ -
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~--~--------~~~g~ViD~G~~~t~v~PV--~ 174 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGS--S--------DETGLVIDSGDSVTHVIPV--V 174 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCC--C--------CCceEEEEcCCCceeeEee--e
Confidence 36899999999999988877765 55566666666666666655432 1 1357899999999997754 3
Q ss_pred CCeEEEEEEecCCCcccHHHHHHHHHHHHHH
Q psy7140 247 KGKLKVLSNVCDSEIGGRNIDKILAEYISTD 277 (1304)
Q Consensus 247 ~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~ 277 (1304)
+|. .+.....-..+||++++..|.+.+...
T Consensus 175 DG~-~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 175 DGI-VLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred ccc-cccccceeeecCcHHHHHHHHHHHhhc
Confidence 332 222233355899999999999888763
No 103
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.14 E-value=3.5e-06 Score=97.59 Aligned_cols=194 Identities=14% Similarity=0.141 Sum_probs=103.1
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHH--------HcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeE
Q psy7140 697 HDCVLAVPSYFTNNERKALLTAAS--------IAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQ 768 (1304)
Q Consensus 697 ~~~VitVP~~f~~~qr~~l~~Aa~--------~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~d 768 (1304)
.-.+||.+...-.+-++.+..+.. .||+++-.++. |-|++.+... .++...++++|+|||||+
T Consensus 89 ~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLs--------eEke~gVa~IDIGgGTT~ 159 (475)
T PRK10719 89 GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLS--------EERNTRVLNIDIGGGTAN 159 (475)
T ss_pred cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhh--------hhccCceEEEEeCCCceE
Confidence 356777776655444444443221 26777766666 8887765531 145678999999999999
Q ss_pred EEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEe
Q psy7140 769 VCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIE 848 (1304)
Q Consensus 769 vsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie 848 (1304)
++++. +|. +.+....++||+.++.. -+.- + ....+ ...+++++ .. ..+.
T Consensus 160 iaVf~--~G~---l~~T~~l~vGG~~IT~D-~~~~---------i-~yis~-~~~~l~~~----------~~--~~~~-- 208 (475)
T PRK10719 160 YALFD--AGK---VIDTACLNVGGRLIETD-SQGR---------V-TYISP-PGQMILDE----------LG--LAIT-- 208 (475)
T ss_pred EEEEE--CCE---EEEEEEEecccceEEEC-CCCC---------E-EEECh-HHHHHHHH----------cC--CCcc--
Confidence 99975 443 23334558999977654 1100 0 00011 11112111 11 0011
Q ss_pred eecCCcceEEEecHHHHHHHHHHHHHHHHHHHH-------HHHH-hcCCC-CCceeEEEEecCCCCChhHHHHHHHHcCC
Q psy7140 849 CFMDDKDVHAELKRNDLETLCEHIFGRIEICLN-------KCIA-ESKLP-VNAIHSIEIVGGSSRIPAFKNVIESVFHK 919 (1304)
Q Consensus 849 ~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~-------~~l~-~~~~~-~~~I~~V~LvGG~srip~v~~~l~~~fg~ 919 (1304)
.--.++.+++..+|+.+.+-+.+.+. +.|- ...++ ...++.|.+.||-+..-|=+ .
T Consensus 209 -------~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~iy~~--------~ 273 (475)
T PRK10719 209 -------DGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDCIYRH--------Q 273 (475)
T ss_pred -------ccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhheecC--------C
Confidence 11145667777777766666555554 1111 11222 35689999999987553211 1
Q ss_pred CCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 920 PPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 920 ~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.-...--.|--+-+|.|+.....-..
T Consensus 274 ~~~~f~yGDiG~lLg~ai~~~~~~~~ 299 (475)
T PRK10719 274 PADPFRYGDIGPLLATALHEHPRLRE 299 (475)
T ss_pred cCCccccCcHHHHHHHHHhhChhccc
Confidence 11112234556667777665444333
No 104
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.11 E-value=0.00021 Score=89.72 Aligned_cols=266 Identities=16% Similarity=0.233 Sum_probs=152.2
Q ss_pred eeCHHHHHHHHHHHHHHHHHhhhc--------------cccceEEEeecCCCCHHHHHHHHHHHHHc--------CCc--
Q psy7140 670 VFSPEQLTAMLFTKLKDISENEIQ--------------NKVHDCVLAVPSYFTNNERKALLTAASIA--------GLN-- 725 (1304)
Q Consensus 670 ~~~~eel~a~~L~~l~~~a~~~~~--------------~~~~~~VitVP~~f~~~qr~~l~~Aa~~A--------Gl~-- 725 (1304)
.||-..+..++|..+.-+|-...+ .....+++|||+-....+|+.+++.++.| |..
T Consensus 416 ~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lGw~~~ 495 (1002)
T PF07520_consen 416 HYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALGWHPW 495 (1002)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 355556666666665555543332 34568999999999999999998888765 421
Q ss_pred -------------------eeeeechhHHHHHHhc------------------cccCCCC----CCCCCCcEEEEEEeCC
Q psy7140 726 -------------------VLRLINETTATALAYG------------------IYKQDLP----EDDQNPRYVAFVDFGY 764 (1304)
Q Consensus 726 -------------------~~~li~Ep~Aaal~y~------------------~~~~~~~----~~~~~~~~vlv~D~Gg 764 (1304)
+..=-+|.||.=+-|. +.+.+-. ....+.-.|.-+|+||
T Consensus 496 ~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASIDIGG 575 (1002)
T PF07520_consen 496 DDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASIDIGG 575 (1002)
T ss_pred CCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEEecCC
Confidence 0001245555333331 1121111 1123346789999999
Q ss_pred ceeEEEEEEEE----CC-eEEEEE---EecCCCCCcHHHHHHHH-HHHHHHHHHh----------------cCCCCCCCH
Q psy7140 765 SALQVCIAAFV----KG-KLKVLS---NVCDSEIGGRNIDKILA-EYISTDFVKR----------------YKIDPRTNA 819 (1304)
Q Consensus 765 gt~dvsvv~~~----~~-~~~v~~---~~~~~~lGG~~~D~~l~-~~l~~~~~~~----------------~~~~~~~~~ 819 (1304)
||||+.|-.+. .| ...+.- ..-+-.+.|+||-..+. .++...+.+. +|.+-....
T Consensus 576 GTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg~~~~ 655 (1002)
T PF07520_consen 576 GTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDGQSDQ 655 (1002)
T ss_pred CcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcchhHH
Confidence 99999999887 22 222221 11234688998876554 4444444332 121211111
Q ss_pred H--------------HHHHHHHHHHHHHHHhccCCceeeeEEeee---------------------------cCCcceEE
Q psy7140 820 R--------------AYIRLLSEIEKLKKQMSANSNKLPLNIECF---------------------------MDDKDVHA 858 (1304)
Q Consensus 820 ~--------------~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l---------------------------~~~~d~~~ 858 (1304)
. ...+++.++|..-..-..+ .....+..+ ++=.|+.+
T Consensus 656 ~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~--~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdildv~l 733 (1002)
T PF07520_consen 656 DRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSA--EIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILDVPL 733 (1002)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCc--cccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceecceE
Confidence 0 1123444554421100000 001111111 11134567
Q ss_pred EecHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCC------------
Q psy7140 859 ELKRNDLETLCE---HIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPST------------ 923 (1304)
Q Consensus 859 ~itr~efe~l~~---~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~------------ 923 (1304)
.|+..++...+- -.+.+....+-+++...+. |.++|+|--||+|.||..+++....++.+
T Consensus 734 ~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~C-----DVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~tg~W 808 (1002)
T PF07520_consen 734 EIDLEKLHAAFLSDRMVICKTLRALCEVVHHYDC-----DVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRTGNW 808 (1002)
T ss_pred EEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhCC-----CEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeeeccc
Confidence 899999888664 4555555666666655543 78999999999999999999998655322
Q ss_pred --------CCCchhHHHhHHHHHhhHh
Q psy7140 924 --------TLNQDEAVSRGCALQCAIL 942 (1304)
Q Consensus 924 --------~~n~~eava~Gaa~~aa~l 942 (1304)
--||-..||.||.+.+...
T Consensus 809 YPF~~~~rI~dPKTTaaVGAmLc~La~ 835 (1002)
T PF07520_consen 809 YPFNDQGRIDDPKTTAAVGAMLCLLAE 835 (1002)
T ss_pred ccCCCCCcCCCchHHHHHHHHHHHHhc
Confidence 2489999999988765433
No 105
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.10 E-value=0.00016 Score=80.01 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=42.4
Q ss_pred eEEEEecCCCCChhHHHHHHHHcCCCCC-CCCCchhHHHhHHHHHhhH
Q psy7140 895 HSIEIVGGSSRIPAFKNVIESVFHKPPS-TTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 895 ~~V~LvGG~srip~v~~~l~~~fg~~~~-~~~n~~eava~Gaa~~aa~ 941 (1304)
..|+|+||.++.|.+.+.+++.+|.++. .+.+|..+.|+|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999998876 5778999999999999864
No 106
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.07 E-value=4e-05 Score=85.27 Aligned_cols=171 Identities=16% Similarity=0.221 Sum_probs=103.6
Q ss_pred EeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHH
Q psy7140 199 RLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDF 278 (1304)
Q Consensus 199 ~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~ 278 (1304)
..++|-+|-+.+.....+. .+ .|+|+||..+-+..++ +|.+.-.........|+..|.+.+++.+
T Consensus 73 ~~~~ei~~~~~g~~~~~~~-------~~--~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l---- 137 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPE-------AR--GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL---- 137 (248)
T ss_pred CceEEhhHHHHHHHHHCCC-------CC--EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc----
Confidence 3577888876554332221 12 4899999988877766 5655444445556778888988888665
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHhhhccccCC---ceeeEEEee-ecCCcceEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q psy7140 279 VKRYKIDPRTNARAYIRLLSEIEKLKKQMSANS---NKLPLNIEC-FMDDKDVHAELKRNDLETLCEHIFGRIEICLNKC 354 (1304)
Q Consensus 279 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~---~~~~~~i~~-~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~ 354 (1304)
+++. ++++.++..-.... ....+..+. .... +..-.++ ++++..+++.+...+.+.
T Consensus 138 ----~~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~ 197 (248)
T TIGR00241 138 ----GVSV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEM 197 (248)
T ss_pred ----CCCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHH
Confidence 3321 22233322211000 011111110 0000 0011223 345556666655555555
Q ss_pred HHhCCCCCCccc-EEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q psy7140 355 IAESKLPVNAIH-SIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 355 l~~~~~~~~~i~-~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~ 409 (1304)
+...+ ++ .|+|+||.++.|.+.+.+++.++.++..+.+|..+.|+|||++
T Consensus 198 ~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 198 LQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 54433 34 7999999999999999999999998888999999999999973
No 107
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.06 E-value=0.00022 Score=81.93 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=43.4
Q ss_pred cEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhh
Q psy7140 366 HSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCA 411 (1304)
Q Consensus 366 ~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa 411 (1304)
+.|+++||.++.+.+.+.+++.++.++..+.+|+.+.|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 3599999999999999999999999999999999999999999985
No 108
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.98 E-value=0.00029 Score=78.73 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhh
Q psy7140 337 ETLCEHIFGRIEICLN-KCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCA 411 (1304)
Q Consensus 337 e~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa 411 (1304)
|+++..+...+..-+- ++++.-.+. + .|+|+||.+....+.+++++.+|.++..+.+|...-|+|||++|.
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--C--CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHh
Confidence 4445555444433332 244443332 2 299999999999999999999999999999999999999999985
No 109
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.91 E-value=0.0008 Score=77.47 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=43.5
Q ss_pred eEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhh
Q psy7140 895 HSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 895 ~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa 940 (1304)
+.|+++||.++.+.+.+.+++.+|.++..+.+|..+.|.|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999985
No 110
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.81 E-value=0.0028 Score=71.05 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhH
Q psy7140 865 LETLCEHIFGRIEICLNK-CIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 865 fe~l~~~~~~~i~~~i~~-~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ 941 (1304)
.|+++..+...+.+-+.. +++.-.+. + -|+|+||.+....+.+++++.+|.++.++.+|...-|.|||+.|..
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC--C--CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 356666666665554444 55544433 2 2999999999999999999999999999999999999999999853
No 111
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.73 E-value=0.00074 Score=72.02 Aligned_cols=190 Identities=14% Similarity=0.125 Sum_probs=101.1
Q ss_pred HHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHH
Q psy7140 191 SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 270 (1304)
Q Consensus 191 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l 270 (1304)
+..|.++...=-|+.+|.+....... .+..+.|+|+||||||.|++.-. +.+.-+.-+ =.|+-++..|
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG-------t~~PlaIlDmG~GSTDAsii~~~-g~v~~iHlA----GAG~mVTmlI 173 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG-------TDKPLAILDMGGGSTDASIINRD-GEVTAIHLA----GAGNMVTMLI 173 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT---------SSEEEEEE-SSEEEEEEE-TT-S-EEEEEEE-----SHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCCC-------CCCCeEEEecCCCcccHHHhCCC-CcEEEEEec----CCchhhHHHH
Confidence 45688888888999999987754322 23457899999999999997754 333332222 1355555555
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccC-CceeeEEEe-----eecC-------------CcceEEE-
Q psy7140 271 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSAN-SNKLPLNIE-----CFMD-------------DKDVHAE- 330 (1304)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-~~~~~~~i~-----~~~~-------------~~~~~~~- 330 (1304)
... .+++. +.-||..|+.=-.. .+-..+..| ++.. ..+--+.
T Consensus 174 ~sE--------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi 235 (332)
T PF08841_consen 174 NSE--------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPI 235 (332)
T ss_dssp HHH--------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEE
T ss_pred HHh--------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeec
Confidence 433 34322 23456666531110 000011110 0000 0111222
Q ss_pred ---EcHHHHHHHHHHHHHH-HHHHHHHHHHhCC--CCCCcccEEEEEcCCCCchhHHHHHHHhcCC--------CCCCCC
Q psy7140 331 ---LKRNDLETLCEHIFGR-IEICLNKCIAESK--LPVNAIHSIEIVGGSSRIPAFKNVIESVFHK--------PPSTTL 396 (1304)
Q Consensus 331 ---itr~~fe~~~~~~~~~-i~~~i~~~l~~~~--~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~--------~~~~~~ 396 (1304)
++-+.+..+-...-++ +..-.-++|++-. -+..+|+.|+|||||+.=.-|-+++.+.+.. ++.-..
T Consensus 236 ~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~e 315 (332)
T PF08841_consen 236 PGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVE 315 (332)
T ss_dssp SSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTS
T ss_pred CCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeecccccccc
Confidence 3333433333332222 2233344555432 2456899999999999988888888888742 345567
Q ss_pred CchhHHHHHHHHHh
Q psy7140 397 NQDEAVSRGCALQC 410 (1304)
Q Consensus 397 np~eaVa~Gaa~~a 410 (1304)
-|..|||.|+++.-
T Consensus 316 GPRNAVATGLvlsy 329 (332)
T PF08841_consen 316 GPRNAVATGLVLSY 329 (332)
T ss_dssp TTSTHHHHHHHHHH
T ss_pred CchHHHHHHHHHhh
Confidence 89999999998753
No 112
>PRK13317 pantothenate kinase; Provisional
Probab=97.54 E-value=0.0056 Score=68.61 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=41.7
Q ss_pred eeEEEEec-CCCCChhHHHHHHHHc---CCCCCCCCCchhHHHhHHHHHhh
Q psy7140 894 IHSIEIVG-GSSRIPAFKNVIESVF---HKPPSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 894 I~~V~LvG-G~srip~v~~~l~~~f---g~~~~~~~n~~eava~Gaa~~aa 940 (1304)
+..|+++| |.++.|.+++.+.+.+ +.++..+.||..+.|+|||+.+.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 46899999 7999999999999988 56777888999999999999875
No 113
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.47 E-value=0.0082 Score=65.82 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=37.6
Q ss_pred EEEEEcCCCCchhHHHHHHHhcC-CC----CCCCCCchhHHHHHHHHHh
Q psy7140 367 SIEIVGGSSRIPAFKNVIESVFH-KP----PSTTLNQDEAVSRGCALQC 410 (1304)
Q Consensus 367 ~ViLvGG~sr~p~v~~~l~~~f~-~~----~~~~~np~eaVa~Gaa~~a 410 (1304)
.|+|+||.++.+.+.+.|++.++ .+ +..+.+|+.+-|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999885 22 4446689999999999975
No 114
>KOG0676|consensus
Probab=97.40 E-value=0.0044 Score=71.09 Aligned_cols=193 Identities=16% Similarity=0.215 Sum_probs=102.9
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeE-EEEEEEE
Q psy7140 697 HDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQ-VCIAAFV 775 (1304)
Q Consensus 697 ~~~VitVP~~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~d-vsvv~~~ 775 (1304)
..+++|-|..+...-|+.+-+..-. -|++-.+.-..-|.. |+..+ .+-+|+|+|.|-|. +-|++
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE-~fnvpa~yva~qavl--ya~g~----------ttG~VvD~G~gvt~~vPI~e-- 164 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFE-TFNVPALYVAIQAVL--YASGR----------TTGLVVDSGDGVTHVVPIYE-- 164 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhh-hcCccHhHHHHHHHH--HHcCC----------eeEEEEEcCCCceeeeeccc--
Confidence 5799999999999999988776422 234444433333333 54322 35789999999664 44543
Q ss_pred CCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCcee---------eeE
Q psy7140 776 KGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKL---------PLN 846 (1304)
Q Consensus 776 ~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~---------~~~ 846 (1304)
.+.+........+||++++.-|...|.+ .+....... -+.-++.+|+.++--..+. .-.
T Consensus 165 --G~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv~diKeklCyvald~~~e~~~~~~~~~ 232 (372)
T KOG0676|consen 165 --GYALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIVRDIKEKLCYVALDFEEEEETANTSSS 232 (372)
T ss_pred --ccccchhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHHHHhHhhhcccccccchhhhccccccc
Confidence 2223333445689999999977666655 121211111 1122455566554311000 000
Q ss_pred Eee---ecCCcceEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHH--hcCCCCCceeEEEEecCCCCChhHHHHH
Q psy7140 847 IEC---FMDDKDVHAELKRNDLE---TLCEHIF-----GRIEICLNKCIA--ESKLPVNAIHSIEIVGGSSRIPAFKNVI 913 (1304)
Q Consensus 847 ie~---l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~--~~~~~~~~I~~V~LvGG~srip~v~~~l 913 (1304)
++. +-++.- +.+.-+.|. -+++|-+ ..+.+.+-+.+- +..+.+.-...|+|+||+|..|.+.+++
T Consensus 233 l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl 310 (372)
T KOG0676|consen 233 LESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRL 310 (372)
T ss_pred ccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHH
Confidence 110 112221 344433332 2233211 222333333332 2333334467899999999999999988
Q ss_pred HHHcC
Q psy7140 914 ESVFH 918 (1304)
Q Consensus 914 ~~~fg 918 (1304)
.+...
T Consensus 311 ~kEl~ 315 (372)
T KOG0676|consen 311 QKELQ 315 (372)
T ss_pred HHHHh
Confidence 87763
No 115
>KOG0676|consensus
Probab=97.32 E-value=0.0034 Score=71.97 Aligned_cols=194 Identities=16% Similarity=0.203 Sum_probs=100.8
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEE-EEEEEEE
Q psy7140 168 HDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQ-VCIAAFV 246 (1304)
Q Consensus 168 ~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~d-vsv~~~~ 246 (1304)
.-+++|-|..+...-|+.+.+..-.. |++-.+.-.- .|.+ |+..+ ..=+|+|+|.|-++ +-+++
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~-qavl-ya~g~----------ttG~VvD~G~gvt~~vPI~e-- 164 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAI-QAVL-YASGR----------TTGLVVDSGDGVTHVVPIYE-- 164 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHH-HHHH-HHcCC----------eeEEEEEcCCCceeeeeccc--
Confidence 46899999999999999988875442 4554444322 3333 54322 23478999999664 34433
Q ss_pred CCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCc-----------eee
Q psy7140 247 KGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN-----------KLP 315 (1304)
Q Consensus 247 ~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----------~~~ 315 (1304)
| +.+-.......+||+|++.-|...|.+ .+....... -++-++.+|+.++-... ...
T Consensus 165 -G-~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv~diKeklCyvald~~~e~~~~~~~~~ 232 (372)
T KOG0676|consen 165 -G-YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIVRDIKEKLCYVALDFEEEEETANTSSS 232 (372)
T ss_pred -c-cccchhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHHHHhHhhhcccccccchhhhccccccc
Confidence 3 222233345689999999977777654 222221111 11123344444432110 000
Q ss_pred EEEeeecCCcceEEEEcHHHHHH---HHHHH-----HHHHHHHHHHHHHh--CCCCCCcccEEEEEcCCCCchhHHHHHH
Q psy7140 316 LNIECFMDDKDVHAELKRNDLET---LCEHI-----FGRIEICLNKCIAE--SKLPVNAIHSIEIVGGSSRIPAFKNVIE 385 (1304)
Q Consensus 316 ~~i~~~~~~~~~~~~itr~~fe~---~~~~~-----~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~sr~p~v~~~l~ 385 (1304)
+.......+... +.+.-+.|.. +++|- ...+-+.+-+.+.+ ..+.+.-...|+|+||+|.+|.+.+.+.
T Consensus 233 l~~~y~lPDg~~-i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~ 311 (372)
T KOG0676|consen 233 LESSYELPDGQK-ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQ 311 (372)
T ss_pred ccccccCCCCCE-EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHH
Confidence 111111112222 4444433321 11211 11233333333322 2333333568999999999999999888
Q ss_pred HhcC
Q psy7140 386 SVFH 389 (1304)
Q Consensus 386 ~~f~ 389 (1304)
+...
T Consensus 312 kEl~ 315 (372)
T KOG0676|consen 312 KELQ 315 (372)
T ss_pred HHHh
Confidence 7653
No 116
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.27 E-value=0.057 Score=64.07 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=53.0
Q ss_pred EEEEcHHHHHHHHHHH---HHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCC-----------
Q psy7140 328 HAELKRNDLETLCEHI---FGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPS----------- 393 (1304)
Q Consensus 328 ~~~itr~~fe~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~----------- 393 (1304)
.+.|.-.++++.+-.- +......+.+++... +-|.++|+|--||.|.||..++...+.++.
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~y-----~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg 818 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAINHY-----DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVG 818 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHHhhh-----cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecc
Confidence 3566666666544332 233333333443322 336799999999999999999988764332
Q ss_pred ---------CCCCchhHHHHHHHHHhhHhc
Q psy7140 394 ---------TTLNQDEAVSRGCALQCAILS 414 (1304)
Q Consensus 394 ---------~~~np~eaVa~Gaa~~aa~ls 414 (1304)
+.-||...+|.||-+.+..+.
T Consensus 819 ~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 819 TWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 224899999999988775543
No 117
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.20 E-value=0.013 Score=68.60 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=54.0
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHcCCCeEEee---chhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEE
Q psy7140 169 DCVLAVPSYFTNNERKALLTAASIAGLNVLRLI---NETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 245 (1304)
Q Consensus 169 ~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li---~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 245 (1304)
.+.||==+--.++.|..+..-+..||==++.-. .|..-|+-..|..... .++...|+=+|+||||+.+++++-
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S----~~~~~~V~NiDIGGGTtN~avf~~ 162 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALS----KEHHTVVANIDIGGGTTNIAVFDN 162 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHh----hhhCCeEEEEEeCCCceeEEEEEC
Confidence 356665555667778877777777774333221 3444444333322211 134567888999999999999654
Q ss_pred ECCeEEEEEEecCCCcccHHH
Q psy7140 246 VKGKLKVLSNVCDSEIGGRNI 266 (1304)
Q Consensus 246 ~~~~~~v~~~~~~~~lGG~~~ 266 (1304)
|.+. ++. ..++||+.|
T Consensus 163 --G~v~--~T~-cl~IGGRLi 178 (473)
T PF06277_consen 163 --GEVI--DTA-CLDIGGRLI 178 (473)
T ss_pred --CEEE--EEE-EEeeccEEE
Confidence 5444 433 448999854
No 118
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=96.99 E-value=0.029 Score=60.35 Aligned_cols=190 Identities=13% Similarity=0.121 Sum_probs=100.0
Q ss_pred HHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHH
Q psy7140 720 SIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799 (1304)
Q Consensus 720 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l 799 (1304)
+..|.++.--=.|+.+|.+...... ..+..+.++|+||||||+|++.-.+ .+.-+.-+| .|+-++..|
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTP-------Gt~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlAG----AG~mVTmlI 173 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTP-------GTDKPLAILDMGGGSTDASIINRDG-EVTAIHLAG----AGNMVTMLI 173 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTST-------T--SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCC-------CCCCCeEEEecCCCcccHHHhCCCC-cEEEEEecC----CchhhHHHH
Confidence 4557777667789999988764321 2345689999999999999986543 444333332 355555555
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCCce-eeeE-----EeeecC-------------CcceEEE-
Q psy7140 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNK-LPLN-----IECFMD-------------DKDVHAE- 859 (1304)
Q Consensus 800 ~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~-~~~~-----ie~l~~-------------~~d~~~~- 859 (1304)
... .+++. +.-||.+|+-=-+.-+. ..+. +..+.+ ..+--+.
T Consensus 174 ~sE--------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi 235 (332)
T PF08841_consen 174 NSE--------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPI 235 (332)
T ss_dssp HHH--------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEE
T ss_pred HHh--------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeec
Confidence 433 23321 23477887743221000 0000 000000 0011112
Q ss_pred ---ecHHHHHHHHHHHHHH-HHHHHHHHHHhcC--CCCCceeEEEEecCCCCChhHHHHHHHHcC--------CCCCCCC
Q psy7140 860 ---LKRNDLETLCEHIFGR-IEICLNKCIAESK--LPVNAIHSIEIVGGSSRIPAFKNVIESVFH--------KPPSTTL 925 (1304)
Q Consensus 860 ---itr~efe~l~~~~~~~-i~~~i~~~l~~~~--~~~~~I~~V~LvGG~srip~v~~~l~~~fg--------~~~~~~~ 925 (1304)
++-++...+-...-++ +..-.-++|+.-. -...+|+.|+|+|||+.=.-|-+++.+.+. .++.-..
T Consensus 236 ~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~e 315 (332)
T PF08841_consen 236 PGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVE 315 (332)
T ss_dssp SSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTS
T ss_pred CCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeecccccccc
Confidence 2333333322222222 2233345555432 245679999999999998888888888773 2455667
Q ss_pred CchhHHHhHHHHHh
Q psy7140 926 NQDEAVSRGCALQC 939 (1304)
Q Consensus 926 n~~eava~Gaa~~a 939 (1304)
-|-.|||.|.++.-
T Consensus 316 GPRNAVATGLvlsy 329 (332)
T PF08841_consen 316 GPRNAVATGLVLSY 329 (332)
T ss_dssp TTSTHHHHHHHHHH
T ss_pred CchHHHHHHHHHhh
Confidence 89999999998753
No 119
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=96.85 E-value=0.45 Score=56.88 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=51.4
Q ss_pred ceEEEecHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCC---------
Q psy7140 855 DVHAELKRNDLETLCEHI---FGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPS--------- 922 (1304)
Q Consensus 855 d~~~~itr~efe~l~~~~---~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~--------- 922 (1304)
|+.+.|.-.++++.+-.- +......+-+++... +-|.++|+|--+|.|.||..++.....++.
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~y-----~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yr 816 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEAINHY-----DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYR 816 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHHHhhh-----cccEEEEcCCcccCccHHHHHhhcCCCCCCceEecccee
Confidence 344566666666543322 222233333333322 336799999999999999999988754322
Q ss_pred -----------CCCCchhHHHhHHHHHhhH
Q psy7140 923 -----------TTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 923 -----------~~~n~~eava~Gaa~~aa~ 941 (1304)
+--||...+|.||-+.+..
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Ls 846 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALS 846 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHH
Confidence 1248999999998776643
No 120
>KOG0797|consensus
Probab=96.63 E-value=0.016 Score=66.85 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=83.9
Q ss_pred eEeCHHHHHHHHHHHHHHHHHhhhcCccc-----eEEEeecCCCCHHH-HHHHHHHHHHcCCCeEEeechhHHHHHHhhh
Q psy7140 140 HVFSPEQLTAMLFTKLKDISENEIQNKVH-----DCVLAVPSYFTNNE-RKALLTAASIAGLNVLRLINETTATALAYGI 213 (1304)
Q Consensus 140 ~~~~~~el~~~~L~~lk~~a~~~~~~~~~-----~~vitVPa~~~~~q-r~~l~~A~~~AGl~~~~li~Ep~AAal~y~~ 213 (1304)
...+..++++.+-+-+.-.....+..+.+ .+|+.||-.|...+ ++.+.-.....||+...++.|..||....|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 44566666665443333233444554443 58999999999766 4555555678899999999999999976665
Q ss_pred hcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHH
Q psy7140 214 YKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYIS 275 (1304)
Q Consensus 214 ~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 275 (1304)
. .-.|||+|+-+|.++.++ +|+ .+..+.-....||+||++.|+-++.
T Consensus 275 s------------s~CVVdiGAQkTsIaCVE--dGv-s~~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 275 S------------SACVVDIGAQKTSIACVE--DGV-SLPNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred c------------ceeEEEccCcceeEEEee--cCc-cccCceEEeccCCchHHHHHHHHHH
Confidence 2 247899999999888755 443 2222333457899999999997764
No 121
>KOG0797|consensus
Probab=96.33 E-value=0.033 Score=64.39 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=97.0
Q ss_pred eeeCHHHHHHHHHHHHHHHHHhhhccccc-----eEEEeecCCCCHHHHHHHHH-HHHHcCCceeeeechhHHHHHHhcc
Q psy7140 669 HVFSPEQLTAMLFTKLKDISENEIQNKVH-----DCVLAVPSYFTNNERKALLT-AASIAGLNVLRLINETTATALAYGI 742 (1304)
Q Consensus 669 ~~~~~eel~a~~L~~l~~~a~~~~~~~~~-----~~VitVP~~f~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~ 742 (1304)
...+..++++.+-+-+.-...+.+.-+.+ .+|+-||-.|.....+.+.. .....||+-..++-|+.||.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 34566777666555444444555554433 68999999999877555544 4677899999999999999987776
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcC---CCCCCCH
Q psy7140 743 YKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYK---IDPRTNA 819 (1304)
Q Consensus 743 ~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~---~~~~~~~ 819 (1304)
. .-.|||+|+-+|.++.|+-. +...-+.-....||.||++.|+-++... .+. .++.. +
T Consensus 275 s------------s~CVVdiGAQkTsIaCVEdG---vs~~ntri~L~YGGdDitr~f~~ll~rs---~FPy~d~~v~~-~ 335 (618)
T KOG0797|consen 275 S------------SACVVDIGAQKTSIACVEDG---VSLPNTRIILPYGGDDITRCFLWLLRRS---GFPYQDCDVLA-P 335 (618)
T ss_pred c------------ceeEEEccCcceeEEEeecC---ccccCceEEeccCCchHHHHHHHHHHhc---CCCcccccccc-c
Confidence 3 35689999999999887632 1222222234689999999998777541 221 12222 1
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q psy7140 820 RAYIRLLSEIEKLKKQMSA 838 (1304)
Q Consensus 820 ~~~~rL~~~ae~~K~~Ls~ 838 (1304)
-- +--++++|+.++.
T Consensus 336 ~d----~lLl~~LKe~Fc~ 350 (618)
T KOG0797|consen 336 ID----WLLLNQLKEKFCH 350 (618)
T ss_pred cc----HHHHHHHHHHhcc
Confidence 11 2235678888875
No 122
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.15 E-value=0.038 Score=63.19 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=40.3
Q ss_pred cEEEEEcCCCCchhHHHHHHHhcC-----CCCCCCCCchhHHHHHHHHHh
Q psy7140 366 HSIEIVGGSSRIPAFKNVIESVFH-----KPPSTTLNQDEAVSRGCALQC 410 (1304)
Q Consensus 366 ~~ViLvGG~sr~p~v~~~l~~~f~-----~~~~~~~np~eaVa~Gaa~~a 410 (1304)
+.|+|+||.++.+.+.+.|++.++ .++..+.+|+.+.|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999994 456778899999999999985
No 123
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.07 E-value=0.083 Score=60.49 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=40.4
Q ss_pred eEEEEecCCCCChhHHHHHHHHcC-----CCCCCCCCchhHHHhHHHHHh
Q psy7140 895 HSIEIVGGSSRIPAFKNVIESVFH-----KPPSTTLNQDEAVSRGCALQC 939 (1304)
Q Consensus 895 ~~V~LvGG~srip~v~~~l~~~fg-----~~~~~~~n~~eava~Gaa~~a 939 (1304)
..|+++||.++.+.+.+.|++.++ .++..+.+|..+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999994 557788899999999999975
No 124
>PRK13317 pantothenate kinase; Provisional
Probab=96.03 E-value=0.068 Score=60.02 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=42.0
Q ss_pred cccEEEEEc-CCCCchhHHHHHHHhc---CCCCCCCCCchhHHHHHHHHHhh
Q psy7140 364 AIHSIEIVG-GSSRIPAFKNVIESVF---HKPPSTTLNQDEAVSRGCALQCA 411 (1304)
Q Consensus 364 ~i~~ViLvG-G~sr~p~v~~~l~~~f---~~~~~~~~np~eaVa~Gaa~~aa 411 (1304)
.+..|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 346899999 7999999999999988 46677788999999999999875
No 125
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=95.90 E-value=0.009 Score=64.12 Aligned_cols=76 Identities=22% Similarity=0.360 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-CCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhH
Q psy7140 865 LETLCEHIFGRIEICLNKCIAESKLP-VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 865 fe~l~~~~~~~i~~~i~~~l~~~~~~-~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ 941 (1304)
..+++..+++.+.-.++..++...-. ...++.|.++||.++.|.+.+++.+.||.++....+ .|+.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 34445555555554444444433111 234799999999999999999999999988876655 89999999999874
No 126
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=95.60 E-value=0.013 Score=62.76 Aligned_cols=70 Identities=23% Similarity=0.352 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhH
Q psy7140 339 LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 339 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa~ 412 (1304)
+++-+.-.+...++.+-+..+. .++.|+++||.++.|.+.+++...||.++....+ .|+.|.|||+.|+.
T Consensus 127 v~Egia~~~~~~~~~l~~~~~~---~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 127 VLEGIAFSLRQILEELEELTGI---PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS---CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhhccccccc---cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 3444444444444433222243 4789999999999999999999999977755544 99999999999874
No 127
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=95.54 E-value=0.98 Score=53.83 Aligned_cols=215 Identities=17% Similarity=0.124 Sum_probs=117.2
Q ss_pred HHHHHHHHHcCCceeee----echhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEEC---C----eEEE
Q psy7140 713 KALLTAASIAGLNVLRL----INETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVK---G----KLKV 781 (1304)
Q Consensus 713 ~~l~~Aa~~AGl~~~~l----i~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~---~----~~~v 781 (1304)
....++|+..||..-.. +-+.-|.++.-+- ..+. -|++=+|-+|+.+.+..-.. | ....
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~---------~~~~-~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~a 301 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGG---------AQPG-SLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGA 301 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceecccccccccc---------CCCC-eEEEEeccceEEEEecCCceecCccccccccc
Confidence 34567888888853222 2233333332221 1122 33344777777777654321 1 1222
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHH---------hcCCCCCCCHHHHHHHHHHHHHHHHHhccCCceeeeEEeeecC
Q psy7140 782 LSNVCDSEIGGRNIDKILAEYISTDFVK---------RYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMD 852 (1304)
Q Consensus 782 ~~~~~~~~lGG~~~D~~l~~~l~~~~~~---------~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~ 852 (1304)
+--+.-..-||..-.=.|.+||.+.... +++.+. ......++..-+++.+...+-... .+.++.+..
T Consensus 302 i~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~--l~~l~~f~G 377 (544)
T COG1069 302 VLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YESLAQRLELLTEAAAAIPPLASG--LHVLDWFNG 377 (544)
T ss_pred cCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HHHHHHHHHHHHhhHhccCcccCC--cEecccccC
Confidence 2223333557777777788888665211 111111 112233444444555555533211 122222221
Q ss_pred ------CcceEEEe-------cHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHH
Q psy7140 853 ------DKDVHAEL-------KRNDLETLCEHIFGRIE---ICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESV 916 (1304)
Q Consensus 853 ------~~d~~~~i-------tr~efe~l~~~~~~~i~---~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~ 916 (1304)
|.+.+-.| +.+.+-.+....++.+. ..|-+++++.|+ .|+.|+++||..+.|.+.+.+.+.
T Consensus 378 NRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDv 454 (544)
T COG1069 378 NRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADV 454 (544)
T ss_pred CcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHh
Confidence 22222222 23333344444444432 445566667775 479999999999999999999999
Q ss_pred cCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 917 FHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 917 fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.|.++..+ ..++++++|+|+.||.-.+.
T Consensus 455 tg~~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 455 TGRPVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred cCCeEEee-cccchhhhHHHHHHHHHhcc
Confidence 99887766 77889999999999866544
No 128
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=95.31 E-value=0.092 Score=61.73 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=49.4
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHcCCceeeee---chhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEE
Q psy7140 699 CVLAVPSYFTNNERKALLTAASIAGLNVLRLI---NETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFV 775 (1304)
Q Consensus 699 ~VitVP~~f~~~qr~~l~~Aa~~AGl~~~~li---~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~ 775 (1304)
+.||==+-=..+.|..+..-+..||==++.-. -|+.-|+-..|-... ..+....|+=+|+||||+.+++++-
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~----S~~~~~~V~NiDIGGGTtN~avf~~- 162 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAAL----SKEHHTVVANIDIGGGTTNIAVFDN- 162 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHH----hhhhCCeEEEEEeCCCceeEEEEEC-
Confidence 45554444556666666666666663222211 244333322221111 1134577999999999999999764
Q ss_pred CCeEEEEEEecCCCCCcHHH
Q psy7140 776 KGKLKVLSNVCDSEIGGRNI 795 (1304)
Q Consensus 776 ~~~~~v~~~~~~~~lGG~~~ 795 (1304)
|. +++++ ..++||+-|
T Consensus 163 -G~--v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 163 -GE--VIDTA-CLDIGGRLI 178 (473)
T ss_pred -CE--EEEEE-EEeeccEEE
Confidence 33 44443 447999843
No 129
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.29 E-value=0.043 Score=53.42 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=37.3
Q ss_pred EEEEEeCCceeEEEEEEE-ECCeEEEEEEecCCCCC--cHHHH--HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q psy7140 757 VAFVDFGYSALQVCIAAF-VKGKLKVLSNVCDSEIG--GRNID--KILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEK 831 (1304)
Q Consensus 757 vlv~D~Gggt~dvsvv~~-~~~~~~v~~~~~~~~lG--G~~~D--~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~ 831 (1304)
|+++|+|++++.+.+++. ..+.+.+++.+.....| |..|. +.+.+-+...+ .+||+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~-------------------~~AE~ 61 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAI-------------------EEAER 61 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT--H-------------------HHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHH-------------------HHHHH
Confidence 578999999999999887 34456666544333322 77777 67766664443 66788
Q ss_pred H-HHHhcc
Q psy7140 832 L-KKQMSA 838 (1304)
Q Consensus 832 ~-K~~Ls~ 838 (1304)
. |..+..
T Consensus 62 ~~k~~i~~ 69 (120)
T PF14450_consen 62 LAKCEIGS 69 (120)
T ss_dssp H-HHHH--
T ss_pred HhCCeeeE
Confidence 7 877764
No 130
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.11 E-value=1.5 Score=49.56 Aligned_cols=69 Identities=9% Similarity=0.143 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcC-----CCCCCCCCchhHHHHHHHHHh
Q psy7140 339 LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-----KPPSTTLNQDEAVSRGCALQC 410 (1304)
Q Consensus 339 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~-----~~~~~~~np~eaVa~Gaa~~a 410 (1304)
+++...+.+.+.+..++++....... |+|+||..+.+.+++.+.+.+. .++.....|....|.|||++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 44444455555566666655443222 9999999999777777754442 334567789999999999986
No 131
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.03 E-value=5.5 Score=44.96 Aligned_cols=70 Identities=9% Similarity=0.141 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHc-----CCCCCCCCCchhHHHhHHHHHh
Q psy7140 867 TLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF-----HKPPSTTLNQDEAVSRGCALQC 939 (1304)
Q Consensus 867 ~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~f-----g~~~~~~~n~~eava~Gaa~~a 939 (1304)
++++...+.+...+...++........ |+|+||..+.+.+.+.+.+.+ ..++.....|....|.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 455555666666667777665543322 999999999977777775554 2345567789999999999976
No 132
>PRK15027 xylulokinase; Provisional
Probab=94.89 E-value=0.053 Score=66.89 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=58.4
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHh
Q psy7140 861 KRNDLET-LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQC 939 (1304)
Q Consensus 861 tr~efe~-l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~a 939 (1304)
+|.+|-. +++.+.-.+...+ +.+++.+. .++.|+++||+++.+...+++.+.+|.++....+.+++.++|||+.|
T Consensus 357 ~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA 432 (484)
T PRK15027 357 GPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHH
Confidence 5555543 2333333333333 33444443 46889999999999999999999999999766677778999999999
Q ss_pred hHhcCCc
Q psy7140 940 AILSPAV 946 (1304)
Q Consensus 940 a~ls~~~ 946 (1304)
+.-.+.+
T Consensus 433 ~~~~G~~ 439 (484)
T PRK15027 433 QIAANPE 439 (484)
T ss_pred HHhcCCc
Confidence 8765543
No 133
>PLN02669 xylulokinase
Probab=94.87 E-value=0.065 Score=66.91 Aligned_cols=71 Identities=21% Similarity=0.225 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhH
Q psy7140 869 CEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 869 ~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ 941 (1304)
+..+++.+.-.++..++..+.. ..++.|+++||+|+.+.+.+.+.+.||.++.+...+ ++.++|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHHH
Confidence 3444444443334444333322 357899999999999999999999999988766555 7889999999985
No 134
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=94.82 E-value=0.074 Score=66.51 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=63.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhh
Q psy7140 861 KRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 861 tr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa 940 (1304)
+|..+.+++..+++.+.-.++.+++...-....++.|.++||+++.+...+.+.+.+|.++.+..++ |+.++|||+.|+
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~ 489 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAAMLGA 489 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHHHHHH
Confidence 5777777777777777666665555332111247889999999999999999999999999777554 578999999998
Q ss_pred HhcCC
Q psy7140 941 ILSPA 945 (1304)
Q Consensus 941 ~ls~~ 945 (1304)
.-.+.
T Consensus 490 ~~~G~ 494 (541)
T TIGR01315 490 KAAGT 494 (541)
T ss_pred HhcCc
Confidence 65543
No 135
>PRK15027 xylulokinase; Provisional
Probab=94.51 E-value=0.07 Score=65.88 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=60.3
Q ss_pred EcHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q psy7140 331 LKRNDLET-LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 331 itr~~fe~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~ 409 (1304)
-+|.+|-. +++-+.-.+...++ .+++.+. .++.|+++||+++++...+++.+.+|.++....+.+++.|+|||+.
T Consensus 356 ~~~~~l~rAvlEgia~~~~~~~~-~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 356 HGPNELARAVLEGVGYALADGMD-VVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 35666554 34444444555544 3444443 4688999999999999999999999999876667777899999999
Q ss_pred hhHhcCC
Q psy7140 410 CAILSPA 416 (1304)
Q Consensus 410 aa~ls~~ 416 (1304)
|+.-.+.
T Consensus 432 A~~~~G~ 438 (484)
T PRK15027 432 AQIAANP 438 (484)
T ss_pred HHHhcCC
Confidence 9875543
No 136
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.44 E-value=0.11 Score=50.61 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=28.0
Q ss_pred EEEEEecCCeEEEEEEEE-ECCeEEEEEEecCCCcc--cHHHH--HHHHHHH
Q psy7140 228 VAFVDFGYSALQVCIAAF-VKGKLKVLSNVCDSEIG--GRNID--KILAEYI 274 (1304)
Q Consensus 228 vlV~D~GggT~dvsv~~~-~~~~~~v~~~~~~~~lG--G~~~D--~~l~~~l 274 (1304)
|+++|+|++++.+.+.+. ..+.++++.......-| |.+|. +.+.+-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i 52 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAI 52 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHH
Confidence 578999999999999887 33445555322111111 77787 6776655
No 137
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=94.39 E-value=2.7 Score=49.75 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=42.4
Q ss_pred CcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHH
Q psy7140 853 DKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIE 914 (1304)
Q Consensus 853 ~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~ 914 (1304)
+..-.+.||..+..++. ---..+..-++-.|++++++.+||+.|+|.||+.+---+++++.
T Consensus 288 ~~~~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 288 DIGDDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSSS-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 34456689999997753 33345667778888999999999999999999998877777664
No 138
>KOG0677|consensus
Probab=94.38 E-value=1.6 Score=46.55 Aligned_cols=195 Identities=16% Similarity=0.234 Sum_probs=116.4
Q ss_pred cceEEEeecCCCCHHHHHHHHHH-HHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEE
Q psy7140 696 VHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 774 (1304)
Q Consensus 696 ~~~~VitVP~~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 774 (1304)
...+.+|-|+-=....|+.|.+. .+.-||.-+.+.-...-+.++-|+ -.=+|+|-|.|-|-+.-+-
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL------------~tGvVvDSGDGVTHi~PVy- 167 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGL------------LTGVVVDSGDGVTHIVPVY- 167 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcc------------cceEEEecCCCeeEEeeee-
Confidence 34788999998888888888665 577899876665444333333332 1246899999988766432
Q ss_pred ECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHhccCC----------ceee
Q psy7140 775 VKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANS----------NKLP 844 (1304)
Q Consensus 775 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~Ls~~~----------~~~~ 844 (1304)
.+-.+..+ .....+.|++++.-|.+.+..+ .|..+-..+ +.-.+..|+.|+--+ .+.+
T Consensus 168 e~~~l~HL--trRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETT 235 (389)
T KOG0677|consen 168 EGFVLPHL--TRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETT 235 (389)
T ss_pred cceehhhh--hhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhhe
Confidence 11111111 2344688999999999888653 233332222 123455666665311 0111
Q ss_pred eEEee--ecCCcceEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHhcCCCCC--ceeEEEEecCCCCChhHHHH
Q psy7140 845 LNIEC--FMDDKDVHAELKRNDLE---TLCEHIF-----GRIEICLNKCIAESKLPVN--AIHSIEIVGGSSRIPAFKNV 912 (1304)
Q Consensus 845 ~~ie~--l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~~~~~~~--~I~~V~LvGG~srip~v~~~ 912 (1304)
+-+++ +.++. .+.+--+.|| .+++|.+ ..+.+++-.+++.+.++.. --.+|+|.||++.-|.+-..
T Consensus 236 vLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSR 313 (389)
T KOG0677|consen 236 VLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSR 313 (389)
T ss_pred eeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHH
Confidence 22222 12222 2355556664 4566533 3466777788887765432 24689999999999998888
Q ss_pred HHHHc
Q psy7140 913 IESVF 917 (1304)
Q Consensus 913 l~~~f 917 (1304)
|++.+
T Consensus 314 LEkEl 318 (389)
T KOG0677|consen 314 LEKEL 318 (389)
T ss_pred HHHHH
Confidence 77654
No 139
>PLN02669 xylulokinase
Probab=94.31 E-value=0.11 Score=65.00 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=53.2
Q ss_pred EcHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q psy7140 331 LKRNDL-ETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 331 itr~~f-e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~ 409 (1304)
.+|.++ ..+++-+.-.++..++.+ +.. ..++.|+++||+|+.+.+.+++.+.||.++...-.+ ++.|+|||+.
T Consensus 416 ~~~~~~~RAvlEg~a~~~r~~~~~l----~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~ 489 (556)
T PLN02669 416 FDPPSEVRAIIEGQFLSMRAHAERF----GMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALR 489 (556)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH----hCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHH
Confidence 345443 334444444444444333 222 357899999999999999999999999877655444 7889999999
Q ss_pred hhH
Q psy7140 410 CAI 412 (1304)
Q Consensus 410 aa~ 412 (1304)
|+.
T Consensus 490 A~~ 492 (556)
T PLN02669 490 AAH 492 (556)
T ss_pred HHH
Confidence 975
No 140
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=94.25 E-value=0.11 Score=64.97 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=59.2
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHH---HhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHH
Q psy7140 331 LKRNDLETLCEHIFGRIEICLNKCI---AESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCA 407 (1304)
Q Consensus 331 itr~~fe~~~~~~~~~i~~~i~~~l---~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa 407 (1304)
=+|..+..++..+++.+.=.++.++ ++.+. .++.|.++||.++++...+++.+.+|.++....+ .|+.|+|||
T Consensus 410 ~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA 485 (541)
T TIGR01315 410 RSKDGLALLYYATMEFIAYGTRQIVEAMNTAGH---TIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAA 485 (541)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHH
Confidence 3566666666666666544444333 33343 4788999999999999999999999988866655 458899999
Q ss_pred HHhhHhcC
Q psy7140 408 LQCAILSP 415 (1304)
Q Consensus 408 ~~aa~ls~ 415 (1304)
+.|+.-.+
T Consensus 486 ~lA~~~~G 493 (541)
T TIGR01315 486 MLGAKAAG 493 (541)
T ss_pred HHHHHhcC
Confidence 99986554
No 141
>KOG0680|consensus
Probab=93.97 E-value=2.8 Score=46.34 Aligned_cols=104 Identities=19% Similarity=0.252 Sum_probs=57.9
Q ss_pred cceEEEeecCCCCHHHHHHHHHH-HHHcCCCeEEeechhHHHHHHhh-hhcCCCCCCCCCCcEEEEEEecCCeEEEEEEE
Q psy7140 167 VHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYG-IYKQDLPEDDQNPRYVAFVDFGYSALQVCIAA 244 (1304)
Q Consensus 167 ~~~~vitVPa~~~~~qr~~l~~A-~~~AGl~~~~li~Ep~AAal~y~-~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 244 (1304)
-.++|+|=|.+--++-.+.+.+. .+.-++.. +..-+.|+.+++. ..+.........+...+|+|-|-+-|-+.-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip-- 168 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIP-- 168 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEeh--
Confidence 35789999987655444444433 45556643 4444445444443 111111111234568999999998665432
Q ss_pred EECCeEEEEEEecCCCcccHHHHHHHHHHHH
Q psy7140 245 FVKGKLKVLSNVCDSEIGGRNIDKILAEYIS 275 (1304)
Q Consensus 245 ~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 275 (1304)
+-+|.....+.. -..+||..++..|.+.+.
T Consensus 169 ~v~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 169 VVKGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred hhcCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 222322111111 347999999999988774
No 142
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=93.93 E-value=0.2 Score=55.19 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=38.2
Q ss_pred eEEEEecCCCCChhHHHHHHHHcCC-C----CCCCCCchhHHHhHHHHHh
Q psy7140 895 HSIEIVGGSSRIPAFKNVIESVFHK-P----PSTTLNQDEAVSRGCALQC 939 (1304)
Q Consensus 895 ~~V~LvGG~srip~v~~~l~~~fg~-~----~~~~~n~~eava~Gaa~~a 939 (1304)
+.|+|+||.++.+.+.+.|++.++. + +..+.+|+.+-|+|||++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3599999999999999999999842 3 4556789999999999874
No 143
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=93.58 E-value=0.17 Score=62.50 Aligned_cols=52 Identities=25% Similarity=0.499 Sum_probs=45.2
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||+++.+.+.+++.+.||.++.... ..|+.++|||+.|+.-.+.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcCC
Confidence 478999999999999999999999999887664 6668899999999876554
No 144
>PRK00047 glpK glycerol kinase; Provisional
Probab=93.54 E-value=0.16 Score=62.99 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=44.3
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||+++.|...+++.+.||.++.... ..|+.++|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcCc
Confidence 368899999999999999999999999986554 4578899999999865543
No 145
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=93.47 E-value=0.14 Score=63.28 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=44.4
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||++|.+...+++.+.||.++... +..|+.++|||+.|+.-.+.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~-~~~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVRP-KVTETTALGAAYAAGLAVGY 450 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEec-CCCcchHHHHHHHHHhhcCc
Confidence 46889999999999999999999999998764 44578899999999865553
No 146
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=93.38 E-value=0.17 Score=62.16 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=44.6
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||+++.|...+.+.+.||.++....++ |+.++|||+.|+.-.+.
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGaA~~a~~a~G~ 444 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGAAMFGFYGVGE 444 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHHHHHHHHhcCc
Confidence 46889999999999999999999999998766554 68899999999865543
No 147
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=93.33 E-value=0.17 Score=63.21 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=45.1
Q ss_pred ceeEEEEecCC-CCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGS-SRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~-srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||+ ++.+.+.+.+.+.||.++.+..++ |+.++|||+.|+.-.+.
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAIFAAVAAGV 487 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHHHHHHHcCC
Confidence 47899999999 999999999999999998776664 68899999999876554
No 148
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=93.24 E-value=2.8 Score=49.61 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=43.6
Q ss_pred cceEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHH-HhcC
Q psy7140 325 KDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIE-SVFH 389 (1304)
Q Consensus 325 ~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~-~~f~ 389 (1304)
..-.+.||..+++++... -.-+..-++-+|++++++.++|+.|+|.||+..---+++++. .+++
T Consensus 289 ~~~~i~itq~DIr~~qlA-KaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP 353 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQLA-KAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLP 353 (412)
T ss_dssp SSS-EEEEHHHHHHHHHH-HHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS-
T ss_pred CCCCEEEeHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCC
Confidence 345688999999875432 223566777888999999999999999999998888887776 4444
No 149
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=93.17 E-value=0.21 Score=62.03 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=44.2
Q ss_pred eeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 894 IHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 894 I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
++.|.++||+++.+...+.+.+.||.++.... ..|+.++|||+.|+.-.+.
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCc
Confidence 68899999999999999999999999987665 5557899999999865554
No 150
>PRK04123 ribulokinase; Provisional
Probab=93.11 E-value=0.18 Score=63.29 Aligned_cols=73 Identities=12% Similarity=0.296 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHH---HhcCCCCCceeEEEEecCC-CCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhc
Q psy7140 868 LCEHIFGRIEICLNKCI---AESKLPVNAIHSIEIVGGS-SRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILS 943 (1304)
Q Consensus 868 l~~~~~~~i~~~i~~~l---~~~~~~~~~I~~V~LvGG~-srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls 943 (1304)
++..+++.+.-.++..+ ++.+. .++.|.++||+ ++.+...+.+.+.||.++.+.- ..|+.++|||+.|+.-.
T Consensus 413 l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~~ 488 (548)
T PRK04123 413 IYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVAA 488 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHHh
Confidence 34444444443333333 33343 46889999999 9999999999999999886554 45788999999998654
Q ss_pred C
Q psy7140 944 P 944 (1304)
Q Consensus 944 ~ 944 (1304)
+
T Consensus 489 G 489 (548)
T PRK04123 489 G 489 (548)
T ss_pred c
Confidence 4
No 151
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=93.03 E-value=0.74 Score=54.84 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=51.5
Q ss_pred HHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhHhcCC
Q psy7140 350 CLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 416 (1304)
Q Consensus 350 ~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa~ls~~ 416 (1304)
.|-+++++.|+ .|+.|+..||-.+.|.+.+.+....|+++... ..++++++|+|+.|+.-.+.
T Consensus 420 ~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 420 AIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred HHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcCCeEEee-cccchhhhHHHHHHHHHhcc
Confidence 34445666665 47899999999999999999999999777665 77889999999999876643
No 152
>KOG2517|consensus
Probab=93.00 E-value=0.27 Score=58.85 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhHhcCCce
Q psy7140 339 LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVK 418 (1304)
Q Consensus 339 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa~ls~~~~ 418 (1304)
+++-+..++...++.+-++.+ ..|+.+.+.||.|+.|.+.+.+.+.+|.++..+.+++. ++.|||+.|+..++...
T Consensus 392 ~leai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~~ 467 (516)
T KOG2517|consen 392 ALEAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKWS 467 (516)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCCcc
Confidence 444555556666655544443 46788999999999999999999999999999988888 99999999999887643
No 153
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=93.00 E-value=0.22 Score=61.55 Aligned_cols=81 Identities=23% Similarity=0.382 Sum_probs=56.2
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q psy7140 332 KRNDLET-LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQC 410 (1304)
Q Consensus 332 tr~~fe~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~a 410 (1304)
++.++-. +++.+.-.+...++ .+++.+ ...++.|.++||.++.+.+.+++.+.||.++.... ..|+.|+|||+.|
T Consensus 360 ~~~~l~railEgia~~~~~~~~-~l~~~~--~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a 435 (481)
T TIGR01312 360 TRADLTRAVLEGVTFALRDSLD-ILREAG--GIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILA 435 (481)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHhc--CCCcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHH
Confidence 3444433 33444444444444 333321 12478999999999999999999999998776554 6678899999999
Q ss_pred hHhcCC
Q psy7140 411 AILSPA 416 (1304)
Q Consensus 411 a~ls~~ 416 (1304)
+.-.+.
T Consensus 436 ~~~~g~ 441 (481)
T TIGR01312 436 AWALGE 441 (481)
T ss_pred HHhcCC
Confidence 876553
No 154
>PRK10331 L-fuculokinase; Provisional
Probab=92.92 E-value=0.22 Score=61.26 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=44.6
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||+++.|...+.+.+.+|.++....+ .|+.++|||+.|+.-.+.
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~a~GaA~la~~~~G~ 440 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAMFGWYGVGE 440 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhcCCeeEecCc-ccchHHHHHHHHHHhcCC
Confidence 4789999999999999999999999999866654 468899999999865544
No 155
>KOG0677|consensus
Probab=92.91 E-value=1.6 Score=46.50 Aligned_cols=194 Identities=16% Similarity=0.268 Sum_probs=109.7
Q ss_pred cceEEEeecCCCCHHHHHHHHHH-HHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEE
Q psy7140 167 VHDCVLAVPSYFTNNERKALLTA-ASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 245 (1304)
Q Consensus 167 ~~~~vitVPa~~~~~qr~~l~~A-~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 245 (1304)
...+.+|-|.-=....|+.|-+. .+..||.-+.+.-...-+. |+. .+ ..=+|+|-|.|-|-+.-+-
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtL--YAQ---GL-------~tGvVvDSGDGVTHi~PVy- 167 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTL--YAQ---GL-------LTGVVVDSGDGVTHIVPVY- 167 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHH--HHh---cc-------cceEEEecCCCeeEEeeee-
Confidence 34688999988887888887776 5778998766544333322 321 11 1126899999988765422
Q ss_pred ECCe-EEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhccccCCc----------ee
Q psy7140 246 VKGK-LKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN----------KL 314 (1304)
Q Consensus 246 ~~~~-~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----------~~ 314 (1304)
++. +..+ .+...+.|+|++.-|.+.+.. +-|......+ .+..+..|+.|+--+- .+
T Consensus 168 -e~~~l~HL--trRldvAGRdiTryLi~LLl~---rGYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalET 234 (389)
T KOG0677|consen 168 -EGFVLPHL--TRRLDVAGRDITRYLIKLLLR---RGYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALET 234 (389)
T ss_pred -cceehhhh--hhhccccchhHHHHHHHHHHh---hccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhh
Confidence 221 1111 234568999999999988853 3343333332 2334445555542110 11
Q ss_pred eEEEee--ecCCcceEEEEcHHHHHH---HHHHHH-----HHHHHHHHHHHHhCCCCCC--cccEEEEEcCCCCchhHHH
Q psy7140 315 PLNIEC--FMDDKDVHAELKRNDLET---LCEHIF-----GRIEICLNKCIAESKLPVN--AIHSIEIVGGSSRIPAFKN 382 (1304)
Q Consensus 315 ~~~i~~--~~~~~~~~~~itr~~fe~---~~~~~~-----~~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~sr~p~v~~ 382 (1304)
.+-++. +-+|. .+.+--+.|+. +++|-+ ..+.+++-++++.+.++.. --.+|+|.||++--|.+-.
T Consensus 235 TvLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPS 312 (389)
T KOG0677|consen 235 TVLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPS 312 (389)
T ss_pred eeeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcH
Confidence 111211 11222 34455555553 444422 1245566666665544322 2368999999999999988
Q ss_pred HHHHhc
Q psy7140 383 VIESVF 388 (1304)
Q Consensus 383 ~l~~~f 388 (1304)
.|++.+
T Consensus 313 RLEkEl 318 (389)
T KOG0677|consen 313 RLEKEL 318 (389)
T ss_pred HHHHHH
Confidence 887665
No 156
>PRK00047 glpK glycerol kinase; Provisional
Probab=92.85 E-value=0.22 Score=61.75 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=55.6
Q ss_pred cHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q psy7140 332 KRNDLE-TLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQC 410 (1304)
Q Consensus 332 tr~~fe-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~a 410 (1304)
+|.++- .+++-+.-.+...++.+-+..+. .++.|.++||.++.|...+++.+.||.++.... ..|+.|+|||+.|
T Consensus 373 ~~~~l~rAvlEgia~~~r~~~e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A 448 (498)
T PRK00047 373 TKEHIIRATLESIAYQTRDVLDAMQADSGI---RLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLA 448 (498)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHH
Confidence 344433 33444444455555433222343 368899999999999999999999998886544 4578899999999
Q ss_pred hHhcC
Q psy7140 411 AILSP 415 (1304)
Q Consensus 411 a~ls~ 415 (1304)
+.-.+
T Consensus 449 ~~~~G 453 (498)
T PRK00047 449 GLAVG 453 (498)
T ss_pred hhhcC
Confidence 86554
No 157
>KOG2517|consensus
Probab=92.77 E-value=0.33 Score=58.09 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCc
Q psy7140 870 EHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAV 946 (1304)
Q Consensus 870 ~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~ 946 (1304)
+.+.-++...|+..-++.+ ..|+.+.+.||.|+.|.+.+.+.+.+|.++.++.+.|- ++.|||+.|+..++.+
T Consensus 394 eai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 394 EAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCCc
Confidence 3333344444433333333 46788999999999999999999999999999999887 9999999999888763
No 158
>PLN02295 glycerol kinase
Probab=92.66 E-value=0.25 Score=61.36 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=44.4
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||+++.|...+.+.+.||.++.... ..|+.++|||+.|+.-.+.
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRPA-DIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEecC-ccccHHHHHHHHHHhhcCc
Confidence 478899999999999999999999999996554 4578899999999865554
No 159
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=92.62 E-value=0.21 Score=61.75 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=56.0
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q psy7140 332 KRNDLET-LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQC 410 (1304)
Q Consensus 332 tr~~fe~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~a 410 (1304)
+|.++-. +++-+.-.+...++.+-+..+. .++.|.++||.++.+...+++.+.||.++... +..|+.|+|||+.|
T Consensus 369 ~~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~-~~~e~~alGaA~~a 444 (493)
T TIGR01311 369 TKAHIARAALEAIAFQTRDVLEAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVRP-KVTETTALGAAYAA 444 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEec-CCCcchHHHHHHHH
Confidence 4555443 3444544555555433222233 36889999999999999999999999888654 44578899999999
Q ss_pred hHhcC
Q psy7140 411 AILSP 415 (1304)
Q Consensus 411 a~ls~ 415 (1304)
+.-.+
T Consensus 445 ~~~~G 449 (493)
T TIGR01311 445 GLAVG 449 (493)
T ss_pred HhhcC
Confidence 86554
No 160
>KOG2531|consensus
Probab=92.61 E-value=0.31 Score=56.15 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=47.4
Q ss_pred hcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhH
Q psy7140 886 ESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 886 ~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ 941 (1304)
..+....+-..|+++||+||...|-+.|.+.||.++..- ...++++.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 445555567899999999999999999999999988766 7788999999999874
No 161
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=92.45 E-value=0.25 Score=60.61 Aligned_cols=51 Identities=16% Similarity=0.213 Sum_probs=43.7
Q ss_pred cccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhHhcC
Q psy7140 364 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSP 415 (1304)
Q Consensus 364 ~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa~ls~ 415 (1304)
.++.|.++||+++.|...+++.+.||.++...-+ .|+.++|||+.|+.-.+
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAMFGFYGVG 443 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHHHHHHhcC
Confidence 4688999999999999999999999988865555 47889999999986554
No 162
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=92.42 E-value=0.39 Score=59.57 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=55.9
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q psy7140 332 KRNDLET-LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQC 410 (1304)
Q Consensus 332 tr~~fe~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~a 410 (1304)
+|.++-. +++-+.-.+...++.+-+..+. .++.|.++||.++.+...+++.+.||.++.... ..|+.|+|||+.|
T Consensus 376 ~~~~i~rAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~a 451 (504)
T PTZ00294 376 TRAHIVRAALEAIALQTNDVIESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLA 451 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHH
Confidence 4555433 3334444444554333222343 368899999999999999999999998886555 5557899999999
Q ss_pred hHhcCC
Q psy7140 411 AILSPA 416 (1304)
Q Consensus 411 a~ls~~ 416 (1304)
+.-.+.
T Consensus 452 a~a~G~ 457 (504)
T PTZ00294 452 GLAVGV 457 (504)
T ss_pred HhhcCc
Confidence 865553
No 163
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=92.40 E-value=0.27 Score=60.22 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=43.8
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||+++.+...+.+.+.+|.++... . .|+.++|||+.|+.-.+.
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIGVQLMALDE 437 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHHHHHHhcCC
Confidence 46889999999999999999999999998644 3 679999999999865554
No 164
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=92.35 E-value=0.27 Score=61.01 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=44.7
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||+++.+...+++.+.||.++....++ |+.++|||+.|+.-.+.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 47899999999999999999999999998766555 68899999999865543
No 165
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=92.33 E-value=0.27 Score=61.47 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=56.4
Q ss_pred EcHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCC-CCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHH
Q psy7140 331 LKRNDLETL-CEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGS-SRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCAL 408 (1304)
Q Consensus 331 itr~~fe~~-~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~ 408 (1304)
-+|.++-.. ++-+.-.+...++ .|++.+. .++.|.++||. ++.+...+++.+.||.++....++ |+.|+|||+
T Consensus 405 ~~~~~~~RAvlEgia~~~~~~l~-~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~ 479 (536)
T TIGR01234 405 TDAPLLYRALIEATAFGTRMIME-TFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAI 479 (536)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHH
Confidence 355554433 3334334444433 3344443 47899999999 999999999999999888666554 688999999
Q ss_pred HhhHhcC
Q psy7140 409 QCAILSP 415 (1304)
Q Consensus 409 ~aa~ls~ 415 (1304)
.|+.-.+
T Consensus 480 lA~~~~G 486 (536)
T TIGR01234 480 FAAVAAG 486 (536)
T ss_pred HHHHHcC
Confidence 9987554
No 166
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.18 E-value=2.3 Score=51.65 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhhhcCccceEEEeecCCCC---HHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCC
Q psy7140 147 LTAMLFTKLKDISENEIQNKVHDCVLAVPSYFT---NNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQ 223 (1304)
Q Consensus 147 l~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~---~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~ 223 (1304)
.+...+.-|+..++..-+..+.++ ..|=.... .+.-+.+..+-+..|+++--+=-|-+|--.++|.... ++.
T Consensus 53 ai~R~~~aL~~f~e~~~~~~~~~v-~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~-~~~--- 127 (492)
T COG0248 53 AIERALSALKRFAELLDGFGAEEV-RVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVAST-LPR--- 127 (492)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEE-EEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhc-CCC---
Confidence 344445555555554445555553 22211111 2335567888888899885444555554444444332 211
Q ss_pred CCcEEEEEEecCCeEEEEEEEE
Q psy7140 224 NPRYVAFVDFGYSALQVCIAAF 245 (1304)
Q Consensus 224 ~~~~vlV~D~GggT~dvsv~~~ 245 (1304)
....+|+|+|||+|.+++..-
T Consensus 128 -~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 128 -KGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred -CCCEEEEEecCCeEEEEEecC
Confidence 345789999999999999763
No 167
>PRK04123 ribulokinase; Provisional
Probab=92.16 E-value=0.27 Score=61.78 Aligned_cols=79 Identities=16% Similarity=0.326 Sum_probs=54.3
Q ss_pred cHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCC-CCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q psy7140 332 KRNDLE-TLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGS-SRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 332 tr~~fe-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~ 409 (1304)
+|.++- .+++-+.-.+...++ .|++.+. .++.|.++||. ++.+...+++.+.||.++...- ..|+.|+|||+.
T Consensus 409 ~~~~l~RAvlEgia~~~~~~~e-~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~l 483 (548)
T PRK04123 409 DAPDIYRALIEATAFGTRAIME-CFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIF 483 (548)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHH
Confidence 455433 233334334444433 3334443 46889999999 9999999999999998875544 457889999999
Q ss_pred hhHhcC
Q psy7140 410 CAILSP 415 (1304)
Q Consensus 410 aa~ls~ 415 (1304)
|+.-.+
T Consensus 484 A~~~~G 489 (548)
T PRK04123 484 AAVAAG 489 (548)
T ss_pred HHHHhc
Confidence 986544
No 168
>PLN02295 glycerol kinase
Probab=92.13 E-value=0.43 Score=59.35 Aligned_cols=83 Identities=10% Similarity=0.174 Sum_probs=56.0
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHhCCC--CCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHH
Q psy7140 332 KRNDLET-LCEHIFGRIEICLNKCIAESKL--PVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCAL 408 (1304)
Q Consensus 332 tr~~fe~-~~~~~~~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~ 408 (1304)
+|.++-. +++-+.-.+...++.+-+..+. ....++.|.++||+++.|...+++.+.||.++.... ..|+.|+|||+
T Consensus 377 ~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~ 455 (512)
T PLN02295 377 NKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPA-DIETTALGAAY 455 (512)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecC-ccccHHHHHHH
Confidence 4555443 3344444444444433222122 233478899999999999999999999998885544 45788999999
Q ss_pred HhhHhcC
Q psy7140 409 QCAILSP 415 (1304)
Q Consensus 409 ~aa~ls~ 415 (1304)
.|+.-.+
T Consensus 456 ~A~~~~G 462 (512)
T PLN02295 456 AAGLAVG 462 (512)
T ss_pred HHHhhcC
Confidence 9986555
No 169
>KOG2531|consensus
Probab=91.98 E-value=0.4 Score=55.23 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=47.4
Q ss_pred hCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhH
Q psy7140 357 ESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 357 ~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa~ 412 (1304)
.-+....+-+.|+.+||+||...|-+.|.+.||.++..- .-.++.|.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 345666677899999999999999999999999877665 8888999999999864
No 170
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=91.93 E-value=0.45 Score=59.12 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=57.0
Q ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHh
Q psy7140 332 KRNDLET-LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQC 410 (1304)
Q Consensus 332 tr~~fe~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~a 410 (1304)
+|.++-. +++.+.-.+...+....+..+. .++.|.++||.++.+...+++.+.||.++....++ |+.++|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHH
Confidence 4454433 3444444455555544443342 47899999999999999999999999888665555 68899999999
Q ss_pred hHhcC
Q psy7140 411 AILSP 415 (1304)
Q Consensus 411 a~ls~ 415 (1304)
+.-.+
T Consensus 447 ~~~~G 451 (505)
T TIGR01314 447 LKALG 451 (505)
T ss_pred HHhcC
Confidence 86554
No 171
>PRK10331 L-fuculokinase; Provisional
Probab=91.82 E-value=0.34 Score=59.60 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=56.0
Q ss_pred EcHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q psy7140 331 LKRNDLET-LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 331 itr~~fe~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~ 409 (1304)
-+|.++-. +++.+.-.+...++. |++.+ ...++.|.++||.++.|...+++.+.||.++....+ .|+.++|||+.
T Consensus 358 ~~~~~l~rAvlEgia~~~~~~~~~-l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~a~GaA~l 433 (470)
T PRK10331 358 TTRGHFYRAALEGLTAQLKRNLQV-LEKIG--HFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAMF 433 (470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH-HHHhc--CCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCc-ccchHHHHHHH
Confidence 35655443 333344444444443 33322 224789999999999999999999999988865554 46889999999
Q ss_pred hhHhcC
Q psy7140 410 CAILSP 415 (1304)
Q Consensus 410 aa~ls~ 415 (1304)
|+.-.+
T Consensus 434 a~~~~G 439 (470)
T PRK10331 434 GWYGVG 439 (470)
T ss_pred HHHhcC
Confidence 986554
No 172
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=91.80 E-value=0.49 Score=53.83 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCC-CCCCCCCchhHHHHHHHHH
Q psy7140 340 CEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHK-PPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 340 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~-~~~~~~np~eaVa~Gaa~~ 409 (1304)
++-..+++.+.|++.....+..+.+. .++.+||.+ |++-..|.+.+|. .+..+..+.-+-|.||++-
T Consensus 217 ~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 217 VRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 33344455556665544446555443 355666666 7778888888884 4555666788889998864
No 173
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=91.60 E-value=0.36 Score=59.11 Aligned_cols=51 Identities=18% Similarity=0.114 Sum_probs=43.6
Q ss_pred cccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhHhcCC
Q psy7140 364 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 416 (1304)
Q Consensus 364 ~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa~ls~~ 416 (1304)
.++.|.++||+++.+...+++.+.+|.++... +.|+.|+|||+.|+.-.+.
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALDE 437 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcCC
Confidence 46889999999999999999999999888643 3679999999999875553
No 174
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=91.51 E-value=0.39 Score=58.91 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=43.6
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||++|.+...+.+.+.+|.++.... .|+.++|||+.|+.-.+.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 468899999999999999999999999986543 379999999998865554
No 175
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=91.45 E-value=2.9 Score=46.28 Aligned_cols=89 Identities=24% Similarity=0.238 Sum_probs=47.1
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHcCCCeEEe---echhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEE
Q psy7140 169 DCVLAVPSYFTNNERKALLTAASIAGLNVLRL---INETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 245 (1304)
Q Consensus 169 ~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~l---i~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 245 (1304)
.+.||=-.--..+.|..+..--..||==++.- -.|..-|.-..+.. .+ ..++...|+=+|+||||+..|++.
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~--t~--Seqr~t~v~NlDIGGGTtN~slFD- 163 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQ--TL--SEQRLTRVLNLDIGGGTTNYSLFD- 163 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCcccc--ch--hhhhceEEEEEeccCCccceeeec-
Confidence 34555555555566666655555555322221 12333333222211 11 123445688899999999999954
Q ss_pred ECCeEEEEEEecCCCcccHHH
Q psy7140 246 VKGKLKVLSNVCDSEIGGRNI 266 (1304)
Q Consensus 246 ~~~~~~v~~~~~~~~lGG~~~ 266 (1304)
.|. ++.+. ...+||+-+
T Consensus 164 -~Gk--v~dTa-CLdiGGRLi 180 (473)
T COG4819 164 -AGK--VSDTA-CLDIGGRLI 180 (473)
T ss_pred -ccc--cccce-eeecCcEEE
Confidence 343 33333 346788743
No 176
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=91.41 E-value=0.39 Score=59.86 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=44.4
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
.++.|.++||+++.+...+.+.+.+|.++....++ |+.++|||+.|+.-.+.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhCC
Confidence 36889999999999999999999999999766544 57899999999865543
No 177
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=90.64 E-value=2.6 Score=47.18 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=38.4
Q ss_pred CceeEEEEecC-CCCChhHHHHHHHHcC---CCCCCCCCchhHHHhHHHH
Q psy7140 892 NAIHSIEIVGG-SSRIPAFKNVIESVFH---KPPSTTLNQDEAVSRGCAL 937 (1304)
Q Consensus 892 ~~I~~V~LvGG-~srip~v~~~l~~~fg---~~~~~~~n~~eava~Gaa~ 937 (1304)
..+..|+++|| .+..|.+++.+...+. .+...+.|....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34688999999 6789999999998874 4566777899999999986
No 178
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=90.38 E-value=0.77 Score=57.24 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=55.0
Q ss_pred cHHHHH-HHHHHHHHHHHHHHHHHHHh-CCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q psy7140 332 KRNDLE-TLCEHIFGRIEICLNKCIAE-SKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 332 tr~~fe-~~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~ 409 (1304)
+|.++- .+++-+.-.+...++. +++ .+. .++.|.++||.++.+...+++.+.+|.++....++ |+.++|||+.
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~-l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~l 453 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQ-IAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIA 453 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHH
Confidence 454433 3344444444444433 333 243 47889999999999999999999999888765544 5789999999
Q ss_pred hhHhcC
Q psy7140 410 CAILSP 415 (1304)
Q Consensus 410 aa~ls~ 415 (1304)
|+.-.+
T Consensus 454 A~~~~G 459 (520)
T PRK10939 454 AGVGAG 459 (520)
T ss_pred HHHHhC
Confidence 986554
No 179
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=90.32 E-value=0.56 Score=57.54 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=43.3
Q ss_pred cccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhHhcCC
Q psy7140 364 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 416 (1304)
Q Consensus 364 ~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa~ls~~ 416 (1304)
.++.|.++||+++.+...+++.+.+|.++.... .|+.++|||+.|+.-.+.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999998885543 379999999999875553
No 180
>PRK10854 exopolyphosphatase; Provisional
Probab=89.86 E-value=3.4 Score=51.24 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=44.8
Q ss_pred HHHHHHHcCCceeeeechhHHHHHHh-ccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcH
Q psy7140 715 LLTAASIAGLNVLRLINETTATALAY-GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGR 793 (1304)
Q Consensus 715 l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~ 793 (1304)
+..+-+..|+++ ++|+...=|.+.| |.... ++ ..+..+|+|+|||+|.+++++ ++.+....+- ++|.-
T Consensus 102 l~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~-l~----~~~~~lvvDIGGGStEl~~~~--~~~~~~~~S~---~lG~v 170 (513)
T PRK10854 102 LKRAEKVIPYPI-EIISGNEEARLIFMGVEHT-QP----EKGRKLVIDIGGGSTELVIGE--NFEPILVESR---RMGCV 170 (513)
T ss_pred HHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcc-cC----CCCCeEEEEeCCCeEEEEEec--CCCeeEeEEE---eccee
Confidence 444556679998 6666555555554 54332 22 125689999999999999975 3332222221 67776
Q ss_pred HHHHHH
Q psy7140 794 NIDKIL 799 (1304)
Q Consensus 794 ~~D~~l 799 (1304)
.+.+.+
T Consensus 171 rl~e~f 176 (513)
T PRK10854 171 SFAQLY 176 (513)
T ss_pred eHHhhh
Confidence 665543
No 181
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.46 E-value=4.8 Score=49.00 Aligned_cols=94 Identities=16% Similarity=0.155 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhhhccccceEEE-eecC-CCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCC
Q psy7140 675 QLTAMLFTKLKDISENEIQNKVHDCVL-AVPS-YFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQ 752 (1304)
Q Consensus 675 el~a~~L~~l~~~a~~~~~~~~~~~Vi-tVP~-~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~ 752 (1304)
+.+...+.-|+..++..-+..+.++.+ +.-+ .=-...-+.+..+-+..|+++--+=-|-+|--.++|.-.. ++ .
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~-~~---~ 127 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVAST-LP---R 127 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhc-CC---C
Confidence 344444444555444444444444222 1111 0111223456777788899884444455555444555332 21 1
Q ss_pred CCcEEEEEEeCCceeEEEEEE
Q psy7140 753 NPRYVAFVDFGYSALQVCIAA 773 (1304)
Q Consensus 753 ~~~~vlv~D~Gggt~dvsvv~ 773 (1304)
....+|+|+|||||.++++.
T Consensus 128 -~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 128 -KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred -CCCEEEEEecCCeEEEEEec
Confidence 56689999999999999986
No 182
>KOG0680|consensus
Probab=89.35 E-value=18 Score=40.37 Aligned_cols=102 Identities=21% Similarity=0.264 Sum_probs=55.8
Q ss_pred cceEEEeecCCCCHHHHH-HHHHHHHHcCCceeeeechhHHHHHHhc---cccCCCCCCCCCCcEEEEEEeCCceeEEEE
Q psy7140 696 VHDCVLAVPSYFTNNERK-ALLTAASIAGLNVLRLINETTATALAYG---IYKQDLPEDDQNPRYVAFVDFGYSALQVCI 771 (1304)
Q Consensus 696 ~~~~VitVP~~f~~~qr~-~l~~Aa~~AGl~~~~li~Ep~Aaal~y~---~~~~~~~~~~~~~~~vlv~D~Gggt~dvsv 771 (1304)
-..+++|=|.+--++-.+ ...-..+.-++..+ ..-+.|+.+++- ....+ .........+|+|.|.+-|.+.-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~--~tt~~~~c~lVIDsGysfThIip 168 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNED--STTTSSECCLVIDSGYSFTHIIP 168 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCcc--ccccccceEEEEeCCCceEEEeh
Confidence 357888888765444333 33333455566543 333333333332 22211 11234568999999998776542
Q ss_pred EEEECCeEEEEEEecCCCCCcHHHHHHHHHHHH
Q psy7140 772 AAFVKGKLKVLSNVCDSEIGGRNIDKILAEYIS 804 (1304)
Q Consensus 772 v~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~ 804 (1304)
+-.|.....+.. ...+||..++..|.+++.
T Consensus 169 --~v~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 169 --VVKGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred --hhcCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 222221111221 347999999999988874
No 183
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=88.14 E-value=2.5 Score=45.30 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEE
Q psy7140 152 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFV 231 (1304)
Q Consensus 152 L~~lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~ 231 (1304)
..+|++..++.++.++ .|+++-..|..+ ++.++--.. |||- |....+... ...++..+++
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~v-------------AAaN-W~Ata~~~~--e~~~dsci~V 135 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREV-------------AAAN-WVATARFLA--EEIKDSCILV 135 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHH-------------HHhh-hHHHHHHHH--HhcCCceEEE
Confidence 3456677777777666 788999998875 222211111 1111 111000000 0134457889
Q ss_pred EecCCeEEEEEEE
Q psy7140 232 DFGYSALQVCIAA 244 (1304)
Q Consensus 232 D~GggT~dvsv~~ 244 (1304)
|+|..|+|+-=+.
T Consensus 136 D~GSTTtDIIPi~ 148 (330)
T COG1548 136 DMGSTTTDIIPIK 148 (330)
T ss_pred ecCCcccceEeec
Confidence 9999999976543
No 184
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=87.63 E-value=1.2 Score=55.02 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=37.3
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhH
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ 941 (1304)
.++.|.++||++|.+...+++.+.+|.++..+...+.+++-||++.+..
T Consensus 401 ~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~ 449 (502)
T COG1070 401 PPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAA 449 (502)
T ss_pred CccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHH
Confidence 4578999999999999999999999999886644444444444444443
No 185
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=87.58 E-value=5.3 Score=44.77 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=38.2
Q ss_pred CcccEEEEEcC-CCCchhHHHHHHHhcC---CCCCCCCCchhHHHHHHHH
Q psy7140 363 NAIHSIEIVGG-SSRIPAFKNVIESVFH---KPPSTTLNQDEAVSRGCAL 408 (1304)
Q Consensus 363 ~~i~~ViLvGG-~sr~p~v~~~l~~~f~---~~~~~~~np~eaVa~Gaa~ 408 (1304)
..+..|+++|| .+..|.+++.+...+. .+....-|....+|+|||+
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34678999999 6789999999988875 4556677889999999986
No 186
>PRK09604 UGMP family protein; Validated
Probab=87.54 E-value=30 Score=40.34 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHc---CCCCCCC---CCchhHHHhHHHHHhh
Q psy7140 876 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF---HKPPSTT---LNQDEAVSRGCALQCA 940 (1304)
Q Consensus 876 i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~f---g~~~~~~---~n~~eava~Gaa~~aa 940 (1304)
+.+.++++++.. +++.|+|.||.+...++++.|.+.+ |.++..+ .--|.+++.|+|=+-.
T Consensus 242 l~~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~ 307 (332)
T PRK09604 242 LVIKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYER 307 (332)
T ss_pred HHHHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHH
Confidence 334444444433 4578999999999999999999988 4443332 2458889999884433
No 187
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=86.58 E-value=2.2 Score=45.18 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCceeeeechhHHHHH
Q psy7140 711 ERKALLTAASIAGLNVLRLINETTATAL 738 (1304)
Q Consensus 711 qr~~l~~Aa~~AGl~~~~li~Ep~Aaal 738 (1304)
..+.+.++++.|||++..++.+|.|++.
T Consensus 158 ~v~n~~~~v~~agl~v~~i~~~~~A~~~ 185 (187)
T smart00842 158 AIQNLEKCVERAGLEVDGIVLEPLASAE 185 (187)
T ss_pred HHHHHHHHHHHcCCchhhEEehhhhhEe
Confidence 4677889999999999999999999874
No 188
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=86.12 E-value=5.1 Score=45.64 Aligned_cols=74 Identities=16% Similarity=0.355 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCeEEeechhHHHHHHh-hhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccH
Q psy7140 186 LLTAASIAGLNVLRLINETTATALAY-GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGR 264 (1304)
Q Consensus 186 l~~A~~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 264 (1304)
+.+.-+..|+++ .+|+..+=|.+.| +.... ++ .....+++|+|||+|.+++++ ++.+.-.. ..++|.-
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~-l~----~~~~~lviDIGGGStEl~~~~--~~~~~~~~---Sl~lG~v 145 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLSS-LP----PDKNGLVIDIGGGSTELILFE--NGKVVFSQ---SLPLGAV 145 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHH-ST----TTSSEEEEEEESSEEEEEEEE--TTEEEEEE---EES--HH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHhh-cc----ccCCEEEEEECCCceEEEEEE--CCeeeEee---eeehHHH
Confidence 444556679988 5566555555555 33222 21 234478999999999988854 45544333 3378877
Q ss_pred HHHHHH
Q psy7140 265 NIDKIL 270 (1304)
Q Consensus 265 ~~D~~l 270 (1304)
.+.+.+
T Consensus 146 rl~e~~ 151 (285)
T PF02541_consen 146 RLTERF 151 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 189
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=86.05 E-value=2.8 Score=51.99 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=48.0
Q ss_pred EcHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q psy7140 331 LKRNDLETLC-EHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 331 itr~~fe~~~-~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~ 409 (1304)
-+|.+|-+.+ +.+.-.+...++ .|++. ....++.|.++||++|.+...+++.+.+|.++......+.+.+-||++.
T Consensus 370 ~~~~~l~ravlEgva~~l~~~~~-~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~ 446 (502)
T COG1070 370 HTRAHLARAVLEGVAFALADGLE-ALEEL--GGKPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALA 446 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HHHHh--cCCCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHH
Confidence 3565555433 333333333333 33333 1234568999999999999999999999988875544444444444444
Q ss_pred hh
Q psy7140 410 CA 411 (1304)
Q Consensus 410 aa 411 (1304)
+.
T Consensus 447 ~~ 448 (502)
T COG1070 447 AA 448 (502)
T ss_pred HH
Confidence 44
No 190
>PRK09604 UGMP family protein; Validated
Probab=85.91 E-value=35 Score=39.73 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhc---CCCCCCC---CCchhHHHHHHHHHhhHhcC
Q psy7140 347 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF---HKPPSTT---LNQDEAVSRGCALQCAILSP 415 (1304)
Q Consensus 347 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f---~~~~~~~---~np~eaVa~Gaa~~aa~ls~ 415 (1304)
+.+.++++++.. +++.|+|.||.+...++++.|.+.+ |..+..+ .--|.++++|+|=+-....+
T Consensus 242 l~~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 242 LVIKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred HHHHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 334444444432 4678999999999999999999987 3333222 24588999998855444444
No 191
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=85.58 E-value=6.4 Score=48.57 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCeEEeechhHHHHHHh-hhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCC
Q psy7140 182 ERKALLTAASIAGLNVLRLINETTATALAY-GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSE 260 (1304)
Q Consensus 182 qr~~l~~A~~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~ 260 (1304)
....+.++-+..|+++ ++|+..+=|.+.| +.... ++. ....+|+|+|||++.+++++ ++.+.-.. ..+
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~-l~~----~~~~lviDIGGGStEl~~~~--~~~~~~~~---Sl~ 161 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT-TGG----ADQRLVVDIGGASTELVTGT--GAQATSLF---SLS 161 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc-cCC----CCCEEEEEecCCeeeEEEec--CCceeeee---EEe
Confidence 3555666667789998 5666555555555 44432 221 22478999999999999865 44333222 347
Q ss_pred cccHHHHHHH
Q psy7140 261 IGGRNIDKIL 270 (1304)
Q Consensus 261 lGG~~~D~~l 270 (1304)
+|.-.+.+.+
T Consensus 162 lG~vrl~e~f 171 (496)
T PRK11031 162 MGCVTWLERY 171 (496)
T ss_pred ccchHHHHHh
Confidence 8876655443
No 192
>PLN02666 5-oxoprolinase
Probab=85.47 E-value=7.4 Score=52.91 Aligned_cols=76 Identities=8% Similarity=0.043 Sum_probs=53.0
Q ss_pred EcHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCC-CCCCCCchhHHHHHHHH
Q psy7140 331 LKRNDLETLCEHIFG-RIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP-PSTTLNQDEAVSRGCAL 408 (1304)
Q Consensus 331 itr~~fe~~~~~~~~-~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~-~~~~~np~eaVa~Gaa~ 408 (1304)
++-++..+-+..++. .....|+......|.++.+. .++..||++ |..--.|.+.+|.+ +..+.+|.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 455555554444433 35667777777778777653 455556654 77888899999965 77788999999999887
Q ss_pred H
Q psy7140 409 Q 409 (1304)
Q Consensus 409 ~ 409 (1304)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 5
No 193
>PRK10854 exopolyphosphatase; Provisional
Probab=84.38 E-value=6.5 Score=48.76 Aligned_cols=76 Identities=13% Similarity=0.245 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCeEEeechhHHHHHHh-hhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCc
Q psy7140 183 RKALLTAASIAGLNVLRLINETTATALAY-GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEI 261 (1304)
Q Consensus 183 r~~l~~A~~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~l 261 (1304)
...+.++-+..|+++ ++|+..+=|.+.| |.... ++ .....+|+|+|||+|.+++++ ++.+....+- ++
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~-l~----~~~~~lvvDIGGGStEl~~~~--~~~~~~~~S~---~l 167 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHT-QP----EKGRKLVIDIGGGSTELVIGE--NFEPILVESR---RM 167 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcc-cC----CCCCeEEEEeCCCeEEEEEec--CCCeeEeEEE---ec
Confidence 444556666779988 6666666666555 44332 22 124578999999999999865 3333322222 67
Q ss_pred ccHHHHHH
Q psy7140 262 GGRNIDKI 269 (1304)
Q Consensus 262 GG~~~D~~ 269 (1304)
|.-.+.+.
T Consensus 168 G~vrl~e~ 175 (513)
T PRK10854 168 GCVSFAQL 175 (513)
T ss_pred ceeeHHhh
Confidence 76655543
No 194
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=84.18 E-value=6.4 Score=42.34 Aligned_cols=73 Identities=18% Similarity=0.228 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEE
Q psy7140 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFV 760 (1304)
Q Consensus 681 L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~ 760 (1304)
..++.+..+...+.++ .++++-..|... +++++--+.|-.| .+|.-.+.. ...++..++|
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~vAAaN--------W~Ata~~~~--------e~~~dsci~V 135 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREVAAAN--------WVATARFLA--------EEIKDSCILV 135 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHHHHhh--------hHHHHHHHH--------HhcCCceEEE
Confidence 3445566666666555 788888888765 3332211111101 111111110 1235678999
Q ss_pred EeCCceeEEEEEE
Q psy7140 761 DFGYSALQVCIAA 773 (1304)
Q Consensus 761 D~Gggt~dvsvv~ 773 (1304)
|+|+.|+|+-=+.
T Consensus 136 D~GSTTtDIIPi~ 148 (330)
T COG1548 136 DMGSTTTDIIPIK 148 (330)
T ss_pred ecCCcccceEeec
Confidence 9999999976554
No 195
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=83.94 E-value=3.7 Score=45.53 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=26.8
Q ss_pred CCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHH
Q psy7140 752 QNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNI 795 (1304)
Q Consensus 752 ~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~ 795 (1304)
+....++=+|+||||+..|++.- |+ +..++ ..++||+-+
T Consensus 142 qr~t~v~NlDIGGGTtN~slFD~--Gk--v~dTa-CLdiGGRLi 180 (473)
T COG4819 142 QRLTRVLNLDIGGGTTNYSLFDA--GK--VSDTA-CLDIGGRLI 180 (473)
T ss_pred hhceEEEEEeccCCccceeeecc--cc--cccce-eeecCcEEE
Confidence 34567888999999999999653 32 34443 347888743
No 196
>PLN02666 5-oxoprolinase
Probab=83.88 E-value=6.6 Score=53.35 Aligned_cols=75 Identities=9% Similarity=0.054 Sum_probs=50.7
Q ss_pred ecHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCC-CCCCCCchhHHHhHHHH
Q psy7140 860 LKRNDLETLCEH-IFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP-PSTTLNQDEAVSRGCAL 937 (1304)
Q Consensus 860 itr~efe~l~~~-~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~-~~~~~n~~eava~Gaa~ 937 (1304)
++-++...-+.. .-+....+|+......|.++.+ -.++..||++ |..--.|.+.+|.+ +..+.+|.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 344444433333 3345566777777777887766 4555666665 66677889999976 67777888888888875
No 197
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=81.72 E-value=10 Score=43.42 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEE
Q psy7140 149 AMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYV 228 (1304)
Q Consensus 149 ~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~v 228 (1304)
...|+..++.++.+ +..-..+|-|--..--.+....+...-...|+++ ++|+...=|.+.|.--...++ ... .
T Consensus 55 ~~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~----~~~-~ 127 (300)
T TIGR03706 55 LEALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLP----IAD-G 127 (300)
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCC----CCC-c
Confidence 34455555555543 3221222222211111233333444445679987 688777777777732222221 112 3
Q ss_pred EEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHH
Q psy7140 229 AFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKI 269 (1304)
Q Consensus 229 lV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~ 269 (1304)
+++|+|||++.++++. ++.+.- ....++|.-.+.+.
T Consensus 128 ~v~DiGGGSte~~~~~--~~~~~~---~~Sl~lG~vrl~e~ 163 (300)
T TIGR03706 128 LVVDIGGGSTELILGK--DFEPGE---GVSLPLGCVRLTEQ 163 (300)
T ss_pred EEEEecCCeEEEEEec--CCCEeE---EEEEccceEEhHHh
Confidence 8999999999999864 333221 11335665555444
No 198
>PRK09557 fructokinase; Reviewed
Probab=81.58 E-value=1e+02 Score=35.18 Aligned_cols=46 Identities=22% Similarity=0.334 Sum_probs=28.5
Q ss_pred eeEEEEecCCCCChhHHHHHHHHcCC---------CCCCCCCchhHHHhHHHHHh
Q psy7140 894 IHSIEIVGGSSRIPAFKNVIESVFHK---------PPSTTLNQDEAVSRGCALQC 939 (1304)
Q Consensus 894 I~~V~LvGG~srip~v~~~l~~~fg~---------~~~~~~n~~eava~Gaa~~a 939 (1304)
.+.|+|-||.++.+.+.+.|++.+.. ++....-.+.+.++|||+..
T Consensus 245 P~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 245 PDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 47788888887776665555554421 12223344678899998754
No 199
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=80.44 E-value=7.9 Score=47.75 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCceeeeechhHHHHHHh-ccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCC
Q psy7140 712 RKALLTAASIAGLNVLRLINETTATALAY-GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEI 790 (1304)
Q Consensus 712 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~l 790 (1304)
...+..+-+..|+++ ++|+...=|-+.| |.... ++ ..+..+|+|+|||+|.+++++ ++.+. .....++
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~-l~----~~~~~lviDIGGGStEl~~~~--~~~~~---~~~Sl~l 162 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT-TG----GADQRLVVDIGGASTELVTGT--GAQAT---SLFSLSM 162 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc-cC----CCCCEEEEEecCCeeeEEEec--CCcee---eeeEEec
Confidence 334455556679998 6666555555444 55432 22 123589999999999999865 33322 2224478
Q ss_pred CcHHHHHHH
Q psy7140 791 GGRNIDKIL 799 (1304)
Q Consensus 791 GG~~~D~~l 799 (1304)
|.-.+.+.+
T Consensus 163 G~vrl~e~f 171 (496)
T PRK11031 163 GCVTWLERY 171 (496)
T ss_pred cchHHHHHh
Confidence 887665544
No 200
>KOG0681|consensus
Probab=80.39 E-value=1.8 Score=51.16 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHc------CC--CCCCCCCchhHHH
Q psy7140 861 KRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF------HK--PPSTTLNQDEAVS 932 (1304)
Q Consensus 861 tr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~f------g~--~~~~~~n~~eava 932 (1304)
+..-+.++++.++.+...-.++.| +..|+|+||.|.+|.+.+.|.+-+ |. .+....||-..+=
T Consensus 535 dQaGl~Ei~~~il~r~p~~eq~~l---------V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW 605 (645)
T KOG0681|consen 535 DQAGLAEIMDTILRRYPHDEQEKL---------VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAW 605 (645)
T ss_pred hhhhHHHHHHHHHHhCchhhhHhh---------hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhh
Confidence 344445555555555444433333 789999999999999999998876 32 2456779999999
Q ss_pred hHHHHHhhH
Q psy7140 933 RGCALQCAI 941 (1304)
Q Consensus 933 ~Gaa~~aa~ 941 (1304)
+||+..|+.
T Consensus 606 ~GA~~~a~n 614 (645)
T KOG0681|consen 606 RGASAWAAN 614 (645)
T ss_pred hhhHHhhcC
Confidence 999999986
No 201
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=79.79 E-value=16 Score=41.91 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=39.1
Q ss_pred CceeEEEEecCCCCChhHHHHHHHHcCCC---CCCCCCc----hhHHHhHHHHHhhHhcCC
Q psy7140 892 NAIHSIEIVGGSSRIPAFKNVIESVFHKP---PSTTLNQ----DEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 892 ~~I~~V~LvGG~srip~v~~~l~~~fg~~---~~~~~n~----~eava~Gaa~~aa~ls~~ 945 (1304)
.+.+.|+|.|-.+|+|-+.+.+++.|+.- ....+.+ -..+|.|||+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhcc
Confidence 45688999999999999998888887431 1111222 244899999999887764
No 202
>PTZ00297 pantothenate kinase; Provisional
Probab=79.75 E-value=2e+02 Score=40.54 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCC-CCChhHHHHHHHHc-----C-CCCCCCCCchhHHHhHHHHH
Q psy7140 866 ETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGS-SRIPAFKNVIESVF-----H-KPPSTTLNQDEAVSRGCALQ 938 (1304)
Q Consensus 866 e~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~-srip~v~~~l~~~f-----g-~~~~~~~n~~eava~Gaa~~ 938 (1304)
++++..++.-|..-|-+.-- ......+|+.|+++|+. ...|...+.|...+ | .+..-.-+....-|+||++.
T Consensus 1365 ~Di~~sll~~is~nIgqia~-l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1365 IDIVRSLLNMISSNVTQLAY-LHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATL 1443 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhc
Confidence 44555555554444432211 01123467899999995 55899988887665 2 22223335667788998875
Q ss_pred h
Q psy7140 939 C 939 (1304)
Q Consensus 939 a 939 (1304)
.
T Consensus 1444 ~ 1444 (1452)
T PTZ00297 1444 D 1444 (1452)
T ss_pred C
Confidence 3
No 203
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=79.34 E-value=11 Score=42.86 Aligned_cols=74 Identities=15% Similarity=0.320 Sum_probs=40.8
Q ss_pred HHHHHHHcCCceeeeechhHHHHHHh-ccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcH
Q psy7140 715 LLTAASIAGLNVLRLINETTATALAY-GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGR 793 (1304)
Q Consensus 715 l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~ 793 (1304)
+...-+..|+++ .+++...=|.+.| |.... + ......+++|+|||+|.+++++ ++.+.-.. ..++|.-
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~-l----~~~~~~lviDIGGGStEl~~~~--~~~~~~~~---Sl~lG~v 145 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLSS-L----PPDKNGLVIDIGGGSTELILFE--NGKVVFSQ---SLPLGAV 145 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHH-S----TTTSSEEEEEEESSEEEEEEEE--TTEEEEEE---EES--HH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHhh-c----cccCCEEEEEECCCceEEEEEE--CCeeeEee---eeehHHH
Confidence 333345569987 5565554444444 33221 1 1245689999999999988864 34333222 3378887
Q ss_pred HHHHHH
Q psy7140 794 NIDKIL 799 (1304)
Q Consensus 794 ~~D~~l 799 (1304)
.+.+.+
T Consensus 146 rl~e~~ 151 (285)
T PF02541_consen 146 RLTERF 151 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766554
No 204
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=78.14 E-value=1.1e+02 Score=35.26 Aligned_cols=93 Identities=15% Similarity=0.207 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhh--hccccceEEEeecCCCCHHH------------HHHHHHHH-HHcCCceeeeechhHHHH
Q psy7140 673 PEQLTAMLFTKLKDISENE--IQNKVHDCVLAVPSYFTNNE------------RKALLTAA-SIAGLNVLRLINETTATA 737 (1304)
Q Consensus 673 ~eel~a~~L~~l~~~a~~~--~~~~~~~~VitVP~~f~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~Aaa 737 (1304)
+++++..+.+.+.+..+.. ...++..+.|++|...+... .-.+.+.. +..|++ +.+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 4555555555555544332 12346677888887554211 11233333 234765 57999999999
Q ss_pred HHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEE
Q psy7140 738 LAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIA 772 (1304)
Q Consensus 738 l~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 772 (1304)
++-.+... ....++++++.+|.|- -.+++
T Consensus 112 laE~~~g~-----~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGA-----GKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcc-----cCCCCcEEEEEeCCcc-EEEEE
Confidence 87544322 1234678888999775 45544
No 205
>KOG0681|consensus
Probab=76.04 E-value=2.5 Score=49.95 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCCCCc--ccEEEEEcCCCCchhHHHHHHHhc-CC-------CCCCCCCchhHHHHHHHHHhhH
Q psy7140 347 IEICLNKCIAESKLPVNA--IHSIEIVGGSSRIPAFKNVIESVF-HK-------PPSTTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 347 i~~~i~~~l~~~~~~~~~--i~~ViLvGG~sr~p~v~~~l~~~f-~~-------~~~~~~np~eaVa~Gaa~~aa~ 412 (1304)
|.+++...|...-..... +..|+|+||.|.+|.+.+.|.+-+ +. .+....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 345555555543222222 789999999999999999998766 22 3456779999999999999986
No 206
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=75.30 E-value=8.4 Score=45.61 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCCc
Q psy7140 875 RIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAV 946 (1304)
Q Consensus 875 ~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~~ 946 (1304)
+..+.++..=++++. .+..+-+=||.++..++.+...+.+|.++.++.+. |.-|+|||+.|..-.+.+
T Consensus 387 Q~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~-EtTAlGaA~lAGla~G~w 454 (499)
T COG0554 387 QTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVVL-ETTALGAAYLAGLAVGFW 454 (499)
T ss_pred HHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeeccccc-hhhHHHHHHHHhhhhCcC
Confidence 333444333334443 57888899999999999999999999998888554 678999999998766643
No 207
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=75.11 E-value=11 Score=43.28 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=43.7
Q ss_pred HHHHHHHH-HHcCCceeeeechhHHHHHHh-ccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCC
Q psy7140 712 RKALLTAA-SIAGLNVLRLINETTATALAY-GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSE 789 (1304)
Q Consensus 712 r~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~ 789 (1304)
++.+.+.. +..|+++ ++++...=|.+.| +... .++ ... .+++|+|||+|.++++. ++.+. .....+
T Consensus 87 ~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~-~~~----~~~-~~v~DiGGGSte~~~~~--~~~~~---~~~Sl~ 154 (300)
T TIGR03706 87 GPEFLREAEAILGLPI-EVISGEEEARLIYLGVAH-TLP----IAD-GLVVDIGGGSTELILGK--DFEPG---EGVSLP 154 (300)
T ss_pred HHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHh-CCC----CCC-cEEEEecCCeEEEEEec--CCCEe---EEEEEc
Confidence 44444444 4579987 6777766666655 3322 221 112 49999999999999865 33221 222345
Q ss_pred CCcHHHHHH
Q psy7140 790 IGGRNIDKI 798 (1304)
Q Consensus 790 lGG~~~D~~ 798 (1304)
+|...+.+.
T Consensus 155 lG~vrl~e~ 163 (300)
T TIGR03706 155 LGCVRLTEQ 163 (300)
T ss_pred cceEEhHHh
Confidence 666655544
No 208
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=74.94 E-value=9 Score=40.50 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=29.0
Q ss_pred eCHHHHHHHHHHHHHHHHHhhhcCccceEEEeecCCCC
Q psy7140 142 FSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFT 179 (1304)
Q Consensus 142 ~~~~el~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~ 179 (1304)
..++. ++..++.+.+.+++.+|.++.++++++|...-
T Consensus 43 ~d~~~-~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~v 79 (187)
T smart00842 43 VDIEA-AARAIREAVEEAERMAGVKIDSVYVGISGRHL 79 (187)
T ss_pred ECHHH-HHHHHHHHHHHHHHHhCCcccEEEEEEcCCce
Confidence 34444 46778888888899999999999999998754
No 209
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=74.51 E-value=2.2e+02 Score=34.95 Aligned_cols=81 Identities=10% Similarity=0.115 Sum_probs=54.3
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHH-HHHHHhcCCCCC-CCCCchhHHHHHHH
Q psy7140 330 ELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFK-NVIESVFHKPPS-TTLNQDEAVSRGCA 407 (1304)
Q Consensus 330 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~-~~l~~~f~~~~~-~~~np~eaVa~Gaa 407 (1304)
+..-.++...++..++++.-.+-+-+.+... .+.+.++||....-..- +.|.+-+...+. .+.--|.-.|.|||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHH
Confidence 3444566666677777765555444443321 46899999998877777 677777665553 44556788999999
Q ss_pred HHhhHhc
Q psy7140 408 LQCAILS 414 (1304)
Q Consensus 408 ~~aa~ls 414 (1304)
+++...-
T Consensus 331 l~~~~~~ 337 (555)
T COG2192 331 LAVKREL 337 (555)
T ss_pred HHHHHHh
Confidence 9987543
No 210
>PLN02939 transferase, transferring glycosyl groups
Probab=72.86 E-value=80 Score=41.59 Aligned_cols=181 Identities=12% Similarity=0.098 Sum_probs=111.6
Q ss_pred cCChHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhcc--hhccccCHHhHHHHHHHHHHHHHHHhhcCCC
Q psy7140 1077 YLANIKVHDLFELECKMQDNDRQEKDRVDAKNALEEYVYELRDGLAN--DKADFITDSNRNVLNKKLDETENWLYEEGQD 1154 (1304)
Q Consensus 1077 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~--~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~ 1154 (1304)
.+-+++++.++.++...++-|+.....+.-|.-|++++-++..++-. .-...+++-+-+.+-++++.++.-|+.-...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (977)
T PLN02939 236 MLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQ 315 (977)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888888888888888888899999999999999988851 1122344555556777777777776532111
Q ss_pred CCH-HHHHHHHHHHHhccchHH---HHHHhhccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHH
Q psy7140 1155 VNR-SVYNDRLNSLRTVGDPVK---MRAMEYAMRPNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQH 1230 (1304)
Q Consensus 1155 a~~-~~~~~kl~~L~~~~~~i~---~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~ 1230 (1304)
++. ...-++-++|++.++.+. .+..-++.|+..++.+++.+...+..+..... =...+++--...++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 388 (977)
T PLN02939 316 VEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDH-------EIHSYIQLYQESIKEF 388 (977)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHH
Confidence 111 111223333444444333 33344556888888888888887776654321 1234455556677777
Q ss_pred HHHHHHHHHhhcc----CCCCCCCccCHHHHHHHHHHH
Q psy7140 1231 VKWIEEKVSKLKS----LPKHENPPITCDQIREEKYKF 1264 (1304)
Q Consensus 1231 ~~Wl~~~~~~q~~----~~~~~dP~~~~~di~~k~~~l 1264 (1304)
+.-|+...+++++ .|..+.|--.+++|--+++.+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 389 QDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred HHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 7777777776666 345555655566665554443
No 211
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=72.14 E-value=17 Score=40.63 Aligned_cols=50 Identities=22% Similarity=0.285 Sum_probs=40.4
Q ss_pred eeEEEEecC--CCCCh-hHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 894 IHSIEIVGG--SSRIP-AFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 894 I~~V~LvGG--~srip-~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
...|+|.|- +.|.| .+++.|++.|..++.. +.. ++.|.|+|+.|.-+.+.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~-L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLV-LDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEE-ecc-hhhhhhHHHHHHHHhCC
Confidence 358999987 99999 9999999999855432 222 78999999999887766
No 212
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=71.07 E-value=43 Score=38.46 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCC---CCCCCCc----hhHHHHHHHHHhhHhc
Q psy7140 342 HIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP---PSTTLNQ----DEAVSRGCALQCAILS 414 (1304)
Q Consensus 342 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~---~~~~~np----~eaVa~Gaa~~aa~ls 414 (1304)
.+++.+.+.|...+.. ..+.+.|+|.|-.+++|-+.+.+++.|+.. ....+.+ ....|.|+|+.|.-+.
T Consensus 242 a~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~gla 317 (343)
T PF07318_consen 242 AMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLA 317 (343)
T ss_pred HHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhh
Confidence 3444445555544332 235688999999999999998888887421 1222222 2458999999997766
Q ss_pred CC
Q psy7140 415 PA 416 (1304)
Q Consensus 415 ~~ 416 (1304)
+.
T Consensus 318 GG 319 (343)
T PF07318_consen 318 GG 319 (343)
T ss_pred cc
Confidence 54
No 213
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=70.77 E-value=64 Score=37.96 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=58.0
Q ss_pred EEEcHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCCcccE-EEEEcCCCCchhHHHHHHHhcC-CCC-CCCCCchhHHHH
Q psy7140 329 AELKRNDLETLCEHIFGRI-EICLNKCIAESKLPVNAIHS-IEIVGGSSRIPAFKNVIESVFH-KPP-STTLNQDEAVSR 404 (1304)
Q Consensus 329 ~~itr~~fe~~~~~~~~~i-~~~i~~~l~~~~~~~~~i~~-ViLvGG~sr~p~v~~~l~~~f~-~~~-~~~~np~eaVa~ 404 (1304)
..-.+.++...++..++++ ...++.++++.+ ++. +.|.||....-..-..|.+..+ ..+ ..+.--|+-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 3456788888888888774 566777777666 345 9999999999988888888855 233 345566899999
Q ss_pred HHHHHhhHhcC
Q psy7140 405 GCALQCAILSP 415 (1304)
Q Consensus 405 Gaa~~aa~ls~ 415 (1304)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999985443
No 214
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=70.47 E-value=3.9 Score=37.97 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.8
Q ss_pred CcEEEEEcCcccEEEEEEeC
Q psy7140 1 MSVIGIDFGTESCYLSVAKS 20 (1304)
Q Consensus 1 m~viGID~GTt~s~va~~~~ 20 (1304)
|.++|||+|.|++.+|+...
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred CcEEEEccCCCeEEEEEECC
Confidence 78999999999999998753
No 215
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=68.46 E-value=4.9 Score=39.93 Aligned_cols=22 Identities=32% Similarity=0.693 Sum_probs=18.9
Q ss_pred CcEEEEEcCcccEEEEEEeCCc
Q psy7140 1 MSVIGIDFGTESCYLSVAKSGG 22 (1304)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~ 22 (1304)
|.++|||+|+..+.+|+.++..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 8899999999999999987654
No 216
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=67.53 E-value=22 Score=39.70 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=39.9
Q ss_pred ccEEEEEcC--CCCch-hHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhHhcCCc
Q psy7140 365 IHSIEIVGG--SSRIP-AFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAV 417 (1304)
Q Consensus 365 i~~ViLvGG--~sr~p-~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa~ls~~~ 417 (1304)
.+.|+|.|- +.|.| .+++.|+++|..++. .+.. ++.|.|+|+.|--+.+..
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~-~L~~-ksAA~G~AiIA~dI~gGk 316 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVL-VLDS-ESAAIGLALIAEDIFSGK 316 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeE-Eecc-hhhhhhHHHHHHHHhCCc
Confidence 348999987 99999 999999999974432 2233 889999999997666543
No 217
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=67.10 E-value=2.4e+02 Score=32.44 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHHHhh--hcCccceEEEeecCCCCHHH------------HHHHHHHH-HHcCCCeEEeechhHHH
Q psy7140 143 SPEQLTAMLFTKLKDISENE--IQNKVHDCVLAVPSYFTNNE------------RKALLTAA-SIAGLNVLRLINETTAT 207 (1304)
Q Consensus 143 ~~~el~~~~L~~lk~~a~~~--~~~~~~~~vitVPa~~~~~q------------r~~l~~A~-~~AGl~~~~li~Ep~AA 207 (1304)
++++++..+...+.+..+.. ...++..+.|++|...+... .-.+.+.. +..|++ +.+.|+..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHH
Confidence 55666555555555544322 12346677888887554221 11233333 234776 5799999999
Q ss_pred HHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEE
Q psy7140 208 ALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIA 243 (1304)
Q Consensus 208 al~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 243 (1304)
|++-...... ...++++++.+|.|- -.+++
T Consensus 111 alaE~~~g~~-----~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 111 ALGEYKKGAG-----KGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHHhccc-----CCCCcEEEEEeCCcc-EEEEE
Confidence 9986543321 133567888898774 44543
No 218
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=66.15 E-value=15 Score=43.01 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCC-CCC------CCCCchhHHHhHHHHH
Q psy7140 866 ETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHK-PPS------TTLNQDEAVSRGCALQ 938 (1304)
Q Consensus 866 e~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~-~~~------~~~n~~eava~Gaa~~ 938 (1304)
++++..+.+=+...|.+.++.... +++.|+++||+++.|.+.+.|++.++. ++. .+.+.-||++. |++
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~L 334 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWL 334 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHH
Confidence 444555555555556566655432 278999999999999999999999964 332 23455565544 555
Q ss_pred hhH
Q psy7140 939 CAI 941 (1304)
Q Consensus 939 aa~ 941 (1304)
|..
T Consensus 335 a~~ 337 (364)
T PF03702_consen 335 AYR 337 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 219
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=65.14 E-value=27 Score=41.56 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=59.5
Q ss_pred EcHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCCCCCCchhHHHHHHHHH
Q psy7140 331 LKRNDLET-LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 331 itr~~fe~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~ 409 (1304)
.++++|-. .++.+.-+..+.++..=++++. .+..+-+=||.|+..++.+...+.+|.++.++.+ .|.-|+|||+.
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~l 446 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYL 446 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHH
Confidence 45566554 3344555556666655555554 5778888999999999999999999987777654 46779999999
Q ss_pred hhHhcC
Q psy7140 410 CAILSP 415 (1304)
Q Consensus 410 aa~ls~ 415 (1304)
|+.-.+
T Consensus 447 AGla~G 452 (499)
T COG0554 447 AGLAVG 452 (499)
T ss_pred HhhhhC
Confidence 987665
No 220
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=64.47 E-value=74 Score=40.85 Aligned_cols=270 Identities=11% Similarity=0.146 Sum_probs=0.0
Q ss_pred EEEEEccCccEEEEEEECCceEEEeCCCCCcccceEEEEeCCceEEcHhHHhhhhcCCCcchhhhhHhcCCCCCChhHHH
Q psy7140 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQE 641 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g~~~ii~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lG~~~~~~~~~~ 641 (1304)
++|||+|.|++++|++..++ .-...++.||. .+
T Consensus 20 ~L~iDIGGT~ir~al~~~~g-----~i~~~~~~~t~-~~----------------------------------------- 52 (638)
T PRK14101 20 RLLADVGGTNARFALETGPG-----EITQIRVYPGA-DY----------------------------------------- 52 (638)
T ss_pred EEEEEcCchhheeeeecCCC-----cccceeEEecC-CC-----------------------------------------
Q ss_pred hhccCCceeeecCCCceEEEEEecCCceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHH--------HH
Q psy7140 642 ELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNE--------RK 713 (1304)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~q--------r~ 713 (1304)
..+...+.+..+..-...+..+.|++|.--+... ..
T Consensus 53 ------------------------------------~~~~~~i~~~l~~~~~~~~~~igig~pGpVd~~~~~~~nl~w~~ 96 (638)
T PRK14101 53 ------------------------------------PTLTDAIRKYLKDVKIGRVNHAAIAIANPVDGDQVRMTNHDWSF 96 (638)
T ss_pred ------------------------------------CCHHHHHHHHHHhcCCCCcceEEEEEecCccCCeeeecCCCcEe
Q ss_pred HHHHHHHHcCCceeeeechhHHHHHH---------hccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEE
Q psy7140 714 ALLTAASIAGLNVLRLINETTATALA---------YGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSN 784 (1304)
Q Consensus 714 ~l~~Aa~~AGl~~~~li~Ep~Aaal~---------y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~ 784 (1304)
.+....+..|++++.++|+-.|+|++ +.+... .......++++-.|-|-=-..++-..++.+-.-+.
T Consensus 97 ~~~~l~~~~g~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g----~~~~~~~~~~lGtGTGlG~a~lv~~~g~~~~~g~E 172 (638)
T PRK14101 97 SIEATRRALGFDTLLVVNDFTALAMALPGLTDAQRVQVGGG----TRRQNSVIGLLGPGTGLGVSGLIPADDRWIALGSE 172 (638)
T ss_pred cHHHHHHHcCCCeEEEEchHHHHHcCCccCCHHHeEEeCCC----CCCCCCcEEEEECCccceeeEEEecCCeeEECCCC
Q ss_pred ecCCCCCcHHHH-HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-----------HHHHHhccCCceeeeEEeeecC
Q psy7140 785 VCDSEIGGRNID-KILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE-----------KLKKQMSANSNKLPLNIECFMD 852 (1304)
Q Consensus 785 ~~~~~lGG~~~D-~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae-----------~~K~~Ls~~~~~~~~~ie~l~~ 852 (1304)
.|...+.-..-. ..+..+++.... ..-....-....+.++.++.. ..+..+......
T Consensus 173 ~GH~~~~~~~~~e~~~~~~~~~~~g-~~~~E~~~Sg~gL~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~g---------- 241 (638)
T PRK14101 173 GGHASFAPQDEREDLVLQYARKKYP-HVSFERVCAGPGMEIIYRALAARDKKRVAANVDTAEIVERAHAG---------- 241 (638)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhcC-cceeeeecchhhHHHHHHHHHhhcCCCCcCcCCHHHHHHHHHCC----------
Q ss_pred CcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCC--hhHHH-HHHHHcCCC---------
Q psy7140 853 DKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRI--PAFKN-VIESVFHKP--------- 920 (1304)
Q Consensus 853 ~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~sri--p~v~~-~l~~~fg~~--------- 920 (1304)
+.++...++.+...+-..+...-....+.+.|+|.||-++- +++.+ .+.+.|..+
T Consensus 242 -------------d~~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ 308 (638)
T PRK14101 242 -------------DALALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLAN 308 (638)
T ss_pred -------------CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhc
Q ss_pred -CCCCCCchhHHHhHHHHHhhHh
Q psy7140 921 -PSTTLNQDEAVSRGCALQCAIL 942 (1304)
Q Consensus 921 -~~~~~n~~eava~Gaa~~aa~l 942 (1304)
+..-+--+.+.-.|||-++..+
T Consensus 309 ipv~~i~~~~~~l~Gaa~~~~~~ 331 (638)
T PRK14101 309 IPTYLITAEYPAFLGVSAILAEQ 331 (638)
T ss_pred CCEEEEeCCChhHHHHHHHHHHH
No 221
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.95 E-value=11 Score=47.95 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=29.9
Q ss_pred CeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEE
Q psy7140 196 NVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAA 244 (1304)
Q Consensus 196 ~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 244 (1304)
++..+.+-|.|-.++....... ..+ +++++|+||.|||++++.
T Consensus 254 pv~tI~SGPAagvvGAa~ltg~-----~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 254 PVETILSGPAAGVVGAAYLTGL-----KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred CeeeEeeccHHHHHHHHHhccc-----ccC-CEEEEEcCCcceeeeeee
Confidence 4555777787776666543111 122 589999999999999977
No 222
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=63.90 E-value=45 Score=36.62 Aligned_cols=94 Identities=14% Similarity=0.224 Sum_probs=55.8
Q ss_pred ccccceEEE--eecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEE
Q psy7140 693 QNKVHDCVL--AVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 770 (1304)
Q Consensus 693 ~~~~~~~Vi--tVP~~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvs 770 (1304)
+..+..++. .+|.+|+.- +++++++.-.|.+. ++-++-+||+.=++.... ......++++|+|=|+|-+.
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~--~vmDTg~AAvlGal~d~~----v~~~~~~~~vniGN~HTlaa 182 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE--VVMDTGPAAVLGALCDPE----VSSREGIIVVNIGNGHTLAA 182 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc--eEecCHHHHHhhhhcChh----hhccCCeEEEEeCCccEEEE
Confidence 445667777 899997743 56666766666666 444444555433333211 12356799999999999888
Q ss_pred EEEEECCeEEEEEEecCCCCCcHHHH
Q psy7140 771 IAAFVKGKLKVLSNVCDSEIGGRNID 796 (1304)
Q Consensus 771 vv~~~~~~~~v~~~~~~~~lGG~~~D 796 (1304)
++ .++++.=+-......+-...+.
T Consensus 183 ~v--~~~rI~GvfEHHT~~l~~~kL~ 206 (254)
T PF08735_consen 183 LV--KDGRIYGVFEHHTGMLTPEKLE 206 (254)
T ss_pred EE--eCCEEEEEEecccCCCCHHHHH
Confidence 87 4444444443433344444333
No 223
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=63.78 E-value=30 Score=40.53 Aligned_cols=71 Identities=10% Similarity=0.173 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCCCCC----CCCchhHHHhHHHHHhhH
Q psy7140 868 LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPST----TLNQDEAVSRGCALQCAI 941 (1304)
Q Consensus 868 l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~~~~----~~n~~eava~Gaa~~aa~ 941 (1304)
++..+.+=+...|.+.++... ...+.|+++||+++.|.+.+.|++.++.++.. ..++|.-=|..-|++|..
T Consensus 264 ~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 264 VQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 334444444555555554432 22468999999999999999999999633322 134444444555666653
No 224
>PRK00976 hypothetical protein; Provisional
Probab=62.07 E-value=38 Score=38.75 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=38.4
Q ss_pred cccEEEEEcCCCCch--hHHHHHHHhcCCCCCCCCCchhHHHHHHHHHhhHhcC
Q psy7140 364 AIHSIEIVGGSSRIP--AFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSP 415 (1304)
Q Consensus 364 ~i~~ViLvGG~sr~p--~v~~~l~~~f~~~~~~~~np~eaVa~Gaa~~aa~ls~ 415 (1304)
+.+.|+|-||-++++ .+.+.+++.+... ...-..++-++|||+.|--+.+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhC
Confidence 367899999999998 7888898888543 2333458999999998876543
No 225
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=62.00 E-value=3e+02 Score=31.80 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=37.6
Q ss_pred EcHHHHHHHHHH----HHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcC
Q psy7140 331 LKRNDLETLCEH----IFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH 389 (1304)
Q Consensus 331 itr~~fe~~~~~----~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~ 389 (1304)
+..++.+.+|.. .++-+.+..+++|+..+ .+.++++||-+..-.+|+++++...
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHH
Confidence 334444455544 34445566667776655 4579999999999999999998763
No 226
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=61.76 E-value=60 Score=35.66 Aligned_cols=94 Identities=14% Similarity=0.208 Sum_probs=54.0
Q ss_pred cCccceEEE--eecCCCCHHHHHHHHHHHHHcCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEE
Q psy7140 164 QNKVHDCVL--AVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241 (1304)
Q Consensus 164 ~~~~~~~vi--tVPa~~~~~qr~~l~~A~~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvs 241 (1304)
+..+...+. .+|.+|+. -+++++++..+|.+. -+++--.||.+....+. .. .....++++|+|=|.|=..
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~-~v----~~~~~~~~vniGN~HTlaa 182 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDP-EV----SSREGIIVVNIGNGHTLAA 182 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcCh-hh----hccCCeEEEEeCCccEEEE
Confidence 455667777 79999773 345666666666665 44444444444333222 11 2345689999999988777
Q ss_pred EEEEECCeEEEEEEecCCCcccHHHH
Q psy7140 242 IAAFVKGKLKVLSNVCDSEIGGRNID 267 (1304)
Q Consensus 242 v~~~~~~~~~v~~~~~~~~lGG~~~D 267 (1304)
++ .++.+.=+-..-...+-.+.+.
T Consensus 183 ~v--~~~rI~GvfEHHT~~l~~~kL~ 206 (254)
T PF08735_consen 183 LV--KDGRIYGVFEHHTGMLTPEKLE 206 (254)
T ss_pred EE--eCCEEEEEEecccCCCCHHHHH
Confidence 76 4555444433323344444333
No 227
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=61.29 E-value=6.2 Score=44.95 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCC-CCCCCCchhHHHhHHHH
Q psy7140 867 TLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP-PSTTLNQDEAVSRGCAL 937 (1304)
Q Consensus 867 ~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~-~~~~~n~~eava~Gaa~ 937 (1304)
.+++-..+++.+.|++.....+..+.+ -.++.+||++ |++-..|.+.+|.+ +..+..+.-+-|.||++
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 344445555666666665555655544 3355566666 67777888888865 55555678888999876
No 228
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=61.18 E-value=2.1e+02 Score=33.04 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhc---CCCCCC-C--CCchhHHHHHHHH
Q psy7140 347 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF---HKPPST-T--LNQDEAVSRGCAL 408 (1304)
Q Consensus 347 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f---~~~~~~-~--~np~eaVa~Gaa~ 408 (1304)
+.+.++.+++.. .++.|+|.||.+...++++.|.+.. +..+.. . .--|.++++|+|=
T Consensus 247 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag 309 (314)
T TIGR03723 247 LVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAG 309 (314)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHH
Confidence 334444554433 4578999999999999999999887 332222 2 2457888888763
No 229
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=60.97 E-value=7.3 Score=36.10 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.2
Q ss_pred ceEEEEEccCccEEEEEEEC
Q psy7140 560 MSVIGIDFGTESCYLSVAKS 579 (1304)
Q Consensus 560 ~~vvGID~Gtt~s~va~~~~ 579 (1304)
|.++|||+|.+++.+|+...
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred CcEEEEccCCCeEEEEEECC
Confidence 35899999999999999854
No 230
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=59.10 E-value=9.9 Score=37.76 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=18.4
Q ss_pred ceEEEEEccCccEEEEEEECC
Q psy7140 560 MSVIGIDFGTESCYLSVAKSG 580 (1304)
Q Consensus 560 ~~vvGID~Gtt~s~va~~~~g 580 (1304)
|.++|||+|+..+.+|+..+.
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 679999999999999998865
No 231
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=57.42 E-value=4.3e+02 Score=33.06 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=37.4
Q ss_pred eeEEEEecCCCCChhHHHHHHHHc---CCCCCCC---CCchhHHHhHHHHHhhHhc
Q psy7140 894 IHSIEIVGGSSRIPAFKNVIESVF---HKPPSTT---LNQDEAVSRGCALQCAILS 943 (1304)
Q Consensus 894 I~~V~LvGG~srip~v~~~l~~~f---g~~~~~~---~n~~eava~Gaa~~aa~ls 943 (1304)
++.|+|+||.....++++.|.+.+ |.++..+ .-.|.+++.|+|.+....+
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 568999999999999999999765 4343332 2568889999887655443
No 232
>PRK00976 hypothetical protein; Provisional
Probab=57.17 E-value=36 Score=38.90 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=39.2
Q ss_pred ceeEEEEecCCCCCh--hHHHHHHHHcCCCCCCCCCchhHHHhHHHHHhhHhcCC
Q psy7140 893 AIHSIEIVGGSSRIP--AFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 945 (1304)
Q Consensus 893 ~I~~V~LvGG~srip--~v~~~l~~~fg~~~~~~~n~~eava~Gaa~~aa~ls~~ 945 (1304)
+.+.|+|-||-++.+ .+.+.+++.+... ...-..++.++|||+.|..+.+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCC
Confidence 357899999999998 8888998888543 22334589999999988776544
No 233
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=55.76 E-value=3.8e+02 Score=31.01 Aligned_cols=51 Identities=14% Similarity=0.318 Sum_probs=37.9
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHc
Q psy7140 862 RNDLETLCEH----IFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF 917 (1304)
Q Consensus 862 r~efe~l~~~----~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~f 917 (1304)
.++.+++|.. .++-+.+..+++|+..+. +.++++||-+....+|+++++..
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~~-----~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHTGK-----KELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CEEEEeccHHHhHHHHHHHHHHH
Confidence 4445555544 455566666777776664 67999999999999999999876
No 234
>PRK02224 chromosome segregation protein; Provisional
Probab=55.21 E-value=2.1e+02 Score=38.49 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHH
Q psy7140 1078 LANIKVHDLFELECKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENW 1147 (1304)
Q Consensus 1078 ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~W 1147 (1304)
.++.+...++.++..+..-++......+++..++...-.++..+. .+...+...++..+...+.+.++=
T Consensus 146 ~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~l~~~~~~ 214 (880)
T PRK02224 146 ATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD-QLKAQIEEKEEKDLHERLNGLESE 214 (880)
T ss_pred CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777778777776655444444444544445555555555443 222233333334444444444433
No 235
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=54.41 E-value=32 Score=40.37 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCC-CCC----CCCCchhHHHHHHHHHhhH
Q psy7140 342 HIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHK-PPS----TTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 342 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~-~~~----~~~np~eaVa~Gaa~~aa~ 412 (1304)
-+.+=+...|.+.++... .+++.|+++||+++.|.+.+.|++.++. .+. ..++|+.-=|.+-|++|..
T Consensus 265 Tlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~ 337 (364)
T PF03702_consen 265 TLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYR 337 (364)
T ss_dssp HHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHH
Confidence 333334444444454432 2378999999999999999999999974 332 2344554444555666654
No 236
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=52.86 E-value=1.2e+02 Score=34.98 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=25.1
Q ss_pred CCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCC
Q psy7140 194 GLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYS 236 (1304)
Q Consensus 194 Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~Ggg 236 (1304)
|+++ .+-|+..|||++-.+.... +....++.+-+|-|
T Consensus 107 ~~Pv-~veNDan~aalaE~~~g~~-----~~~~~~~~i~~gtG 143 (314)
T COG1940 107 GLPV-FVENDANAAALAEAWFGAG-----RGIDDVVYITLGTG 143 (314)
T ss_pred CCCE-EEecHHHHHHHHHHHhCCC-----CCCCCEEEEEEccc
Confidence 5555 8999999999997654432 23345677777755
No 237
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=52.50 E-value=4.4e+02 Score=30.78 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHc
Q psy7140 873 FGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF 917 (1304)
Q Consensus 873 ~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~f 917 (1304)
++-+.+.+.++++.. .++.|+++||-+...++|+.|++..
T Consensus 248 ~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 248 FAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 334444445555543 3578999999999999999999987
No 238
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=52.12 E-value=64 Score=37.83 Aligned_cols=63 Identities=10% Similarity=0.192 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCCCC----CCCCchhHHHHHHHHHhhH
Q psy7140 347 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPS----TTLNQDEAVSRGCALQCAI 412 (1304)
Q Consensus 347 i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~~~----~~~np~eaVa~Gaa~~aa~ 412 (1304)
+...|.+.++... ...+.|+++||+++.|.+.+.|++.++..+. ..++++.-=|..-|++|..
T Consensus 272 TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 272 TAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3344444554332 2246899999999999999999999963222 1256665555666777754
No 239
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=52.08 E-value=38 Score=28.26 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCe
Q psy7140 159 SENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNV 197 (1304)
Q Consensus 159 a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~ 197 (1304)
.+.+.... ...++.|+.++..+|..+.+.|...||..
T Consensus 8 i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 8 LEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 34444433 56789999999999999999999999866
No 240
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=51.84 E-value=38 Score=28.24 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=30.7
Q ss_pred HHHhhhccccceEEEeecCCCCHHHHHHHHHHHHHcCCce
Q psy7140 687 ISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNV 726 (1304)
Q Consensus 687 ~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~AGl~~ 726 (1304)
..+++.... ...++.|+.++..+|..+.+.|+..||..
T Consensus 7 ~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 7 ALEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 334444433 67789999999999999999999999975
No 241
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=51.27 E-value=15 Score=36.67 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.0
Q ss_pred cceEEEEEccCccEEEEEEECC
Q psy7140 559 IMSVIGIDFGTESCYLSVAKSG 580 (1304)
Q Consensus 559 ~~~vvGID~Gtt~s~va~~~~g 580 (1304)
+|.++|||+|+..+.+|+..+.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 5679999999999999988653
No 242
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=50.82 E-value=15 Score=40.64 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=16.3
Q ss_pred EEEEEcCcccEEEEEEeC
Q psy7140 3 VIGIDFGTESCYLSVAKS 20 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~ 20 (1304)
++|||+|||++++++++.
T Consensus 2 ~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeC
Confidence 799999999999998873
No 243
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=50.82 E-value=14 Score=36.75 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=17.9
Q ss_pred CcEEEEEcCcccEEEEEEeC
Q psy7140 1 MSVIGIDFGTESCYLSVAKS 20 (1304)
Q Consensus 1 m~viGID~GTt~s~va~~~~ 20 (1304)
|.++|||+|+..+.+|+.+.
T Consensus 4 ~~iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred CcEEEEEeCCCEEEEEEecC
Confidence 67999999999999998754
No 244
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.61 E-value=65 Score=35.07 Aligned_cols=86 Identities=13% Similarity=0.226 Sum_probs=50.3
Q ss_pred ecCCCCHHHHHHHHHHHHH---cCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEEEECCeE
Q psy7140 174 VPSYFTNNERKALLTAASI---AGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKL 250 (1304)
Q Consensus 174 VPa~~~~~qr~~l~~A~~~---AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~ 250 (1304)
+|-+|+. |+.|+.. +|-. .-+++.-.||+....++. .....||+|+|-|.+..+++ .++.+
T Consensus 186 iPe~FtR-----Mraaa~sal~~~t~-av~mDskfaav~gal~dp--------aa~palvVd~GngHttaalv--dedRI 249 (342)
T COG4012 186 IPESFTR-----MRAAAMSALSAGTD-AVAMDSKFAAVMGALVDP--------AADPALVVDYGNGHTTAALV--DEDRI 249 (342)
T ss_pred CchhHHH-----HHHHHHHHHhcCce-EEEEcchhHhhhhcccCc--------ccCceEEEEccCCceEEEEe--cCCeE
Confidence 6777763 4443332 3333 345566666666555433 22368999999999988884 44555
Q ss_pred EEEEEecCCCcccHHHHHHHHHHHH
Q psy7140 251 KVLSNVCDSEIGGRNIDKILAEYIS 275 (1304)
Q Consensus 251 ~v~~~~~~~~lGG~~~D~~l~~~l~ 275 (1304)
.-+-......|.-+.|...|.+++.
T Consensus 250 ~gv~EHHT~~Lspekled~I~rf~~ 274 (342)
T COG4012 250 VGVYEHHTIRLSPEKLEDQIIRFVE 274 (342)
T ss_pred EEEeecccccCCHHHHHHHHHHHHh
Confidence 5554444556666555555555543
No 245
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=50.31 E-value=2.6e+02 Score=32.91 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=55.3
Q ss_pred EecHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCCceeE-EEEecCCCCChhHHHHHHHHcCC-CCC-CCCCchhHHHhH
Q psy7140 859 ELKRNDLETLCEHIFGRI-EICLNKCIAESKLPVNAIHS-IEIVGGSSRIPAFKNVIESVFHK-PPS-TTLNQDEAVSRG 934 (1304)
Q Consensus 859 ~itr~efe~l~~~~~~~i-~~~i~~~l~~~~~~~~~I~~-V~LvGG~srip~v~~~l~~~fg~-~~~-~~~n~~eava~G 934 (1304)
.-.+.++-..++..++++ ...++.++++.+ ++. +.|.||....-..-..|.+..+. ++. .+.--|+-++.|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 456677777777777665 456667777666 345 99999999888888888887553 333 344568889999
Q ss_pred HHHHhhHhcC
Q psy7140 935 CALQCAILSP 944 (1304)
Q Consensus 935 aa~~aa~ls~ 944 (1304)
||+++.....
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999985443
No 246
>PRK03011 butyrate kinase; Provisional
Probab=50.29 E-value=22 Score=41.69 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=36.6
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcC----CCCCCCCCchhHHHhHHHHH
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFH----KPPSTTLNQDEAVSRGCALQ 938 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg----~~~~~~~n~~eava~Gaa~~ 938 (1304)
++|.|+|.||.+..+.+.+.|++.+. ..+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 57999999999999999998888874 23455566778999998753
No 247
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.77 E-value=2.4e+02 Score=32.72 Aligned_cols=164 Identities=13% Similarity=0.138 Sum_probs=87.0
Q ss_pred cEEEEEEecCCeEEEEEEEEECCeEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHHh
Q psy7140 226 RYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDP--RTNARAYIRLLSEIEKL 303 (1304)
Q Consensus 226 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~--~~~~~~~~~L~~~~e~~ 303 (1304)
...+|+++|| ++-+.+-.+.-.|++ .|..-|-.-+|..+.++..+.|.+.-..-. .-+.....+|+ .
T Consensus 163 ~~r~vlNiGG----IaNlt~l~~~~~v~g--~DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~~ll~~ll-----~ 231 (371)
T COG2377 163 ERRAVLNIGG----IANLTYLPPGGPVLG--FDTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDEALLARLL-----A 231 (371)
T ss_pred CCeEEEeccc----eEEEEecCCCCceee--eecCCcchHHHHHHHHhhCCCcCcCcchhhcCCcCHHHHHHHh-----h
Confidence 5678999998 444444332225655 456677788898888776544321111100 11222222222 2
Q ss_pred hhccccCCceeeEEEeeecCCcceEEE-----------EcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEc
Q psy7140 304 KKQMSANSNKLPLNIECFMDDKDVHAE-----------LKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVG 372 (1304)
Q Consensus 304 K~~Ls~~~~~~~~~i~~~~~~~~~~~~-----------itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvG 372 (1304)
+.-|+....+ ..+-..|... ++.+++......+... .| ++....-....+..+++|
T Consensus 232 ~p~F~~~~Pk-------StgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~eltA~---tI---v~s~~~~~~~p~~l~vcG 298 (371)
T COG2377 232 HPYFALPAPK-------STGRELFNLQWLEQHLDDTQLLNAEDVQATLVELTAA---TI---VKSVATLQGDPRRLVVCG 298 (371)
T ss_pred CCcccCCCcc-------cCCccccchhhHHHHHhhccCCCHHHHHHHHHHHHHH---HH---HHHHhhccCCCceeEeec
Confidence 2333322110 0000111111 4444444333333221 11 122222344568899999
Q ss_pred CCCCchhHHHHHHHhcC-CCCC----CCCCchhHHHHHHHHHhhHh
Q psy7140 373 GSSRIPAFKNVIESVFH-KPPS----TTLNQDEAVSRGCALQCAIL 413 (1304)
Q Consensus 373 G~sr~p~v~~~l~~~f~-~~~~----~~~np~eaVa~Gaa~~aa~l 413 (1304)
|+.+.|.+.+.|...++ ..+. ..++++..=|.+-|+.|...
T Consensus 299 GG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 299 GGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred CCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 99999999999999995 2332 25788888888888888653
No 248
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.74 E-value=4e+02 Score=33.57 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=13.0
Q ss_pred ccChhHHHHHHHHHHHHHHHH
Q psy7140 1182 AMRPNILEEYKHSVQSAKNIV 1202 (1304)
Q Consensus 1182 ~~rp~~~~~l~~~l~~~~~~~ 1202 (1304)
..-|..++.++..+.......
T Consensus 297 ~~dp~~L~ele~RL~~l~~Lk 317 (563)
T TIGR00634 297 EFDPERLNEIEERLAQIKRLK 317 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 334777777777776665543
No 249
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=49.61 E-value=1.7e+02 Score=32.23 Aligned_cols=99 Identities=15% Similarity=0.193 Sum_probs=68.2
Q ss_pred ccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhc
Q psy7140 1128 FITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAFK 1207 (1304)
Q Consensus 1128 ~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~~~ 1207 (1304)
...+.+...+.+.+..+.+||.+ .+.++.+..++++..+.. |..+..++..|+..+.. ...
T Consensus 10 ~~~~~~~~~~i~~l~~al~~L~~------~~~~~~~~~~~~~~i~~a----------P~~~~~l~~~l~~l~~~---~~~ 70 (240)
T PF12795_consen 10 KLDEPEQKALIQDLQQALSFLDE------IKKQKKRAAEYQKQIDQA----------PKEIRELQKELEALKSQ---DAP 70 (240)
T ss_pred CCCChhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHhhhcc---ccc
Confidence 34556788999999999999974 457788888888777655 88888888888877553 112
Q ss_pred CCCCCCCCChhhHHH-HHHHHHHHHHHHHHHHHhhccCC
Q psy7140 1208 GDDRFSHLSKQDLST-VETAIKQHVKWIEEKVSKLKSLP 1245 (1304)
Q Consensus 1208 ~~~~~~~~t~~e~~~-l~~~~~~~~~Wl~~~~~~q~~~~ 1245 (1304)
..+.+..++-++++. |.........|=......+..+-
T Consensus 71 ~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~ 109 (240)
T PF12795_consen 71 SKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLI 109 (240)
T ss_pred cccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567778887776 55555555666555544444433
No 250
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.38 E-value=2.1e+02 Score=33.24 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=40.4
Q ss_pred CCceeEEEEecCCCCChhHHHHHHHHc-CCCCCC----CCCchhHHHhHHHHHhhHh
Q psy7140 891 VNAIHSIEIVGGSSRIPAFKNVIESVF-HKPPST----TLNQDEAVSRGCALQCAIL 942 (1304)
Q Consensus 891 ~~~I~~V~LvGG~srip~v~~~l~~~f-g~~~~~----~~n~~eava~Gaa~~aa~l 942 (1304)
...-+..+++||+.+.|.+.+.|...+ |..+.. .+++|..=|.+-|+.|...
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 344588999999999999999999999 544432 4677877777878877644
No 251
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=48.98 E-value=4.7e+02 Score=30.13 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHc---CCCCCCC---CCchhHHHhHHH
Q psy7140 876 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF---HKPPSTT---LNQDEAVSRGCA 936 (1304)
Q Consensus 876 i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~f---g~~~~~~---~n~~eava~Gaa 936 (1304)
+.+.++.+++.. .++.|+|.||.+...++++.|.+.+ +.++..+ .--|.+++.|+|
T Consensus 247 l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 247 LVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 344445555433 3578999999999999999999987 4443322 245788888876
No 252
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.71 E-value=19 Score=45.80 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccccCCCCCCCC
Q psy7140 673 PEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQ 752 (1304)
Q Consensus 673 ~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~ 752 (1304)
...++..+|+.++...+. .|....-.+.--= --+..+-+.-+..+..+.+-|.|-.+........ .
T Consensus 211 L~pi~~~yl~~v~~~l~~-~g~~~~l~~m~sd--------Ggl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~-----~ 276 (674)
T COG0145 211 LSPILRRYLEAVKDALKE-RGIKARLMVMQSD--------GGLVSAEEAREKPVETILSGPAAGVVGAAYLTGL-----K 276 (674)
T ss_pred ehHHHHHHHHHHHHHHHh-cCCCceeEEEecC--------CccccHHHHhcCCeeeEeeccHHHHHHHHHhccc-----c
Confidence 355677777777775443 2211111111000 0112333444667777888888877665432110 1
Q ss_pred CCcEEEEEEeCCceeEEEEEE
Q psy7140 753 NPRYVAFVDFGYSALQVCIAA 773 (1304)
Q Consensus 753 ~~~~vlv~D~Gggt~dvsvv~ 773 (1304)
.+ +++++||||.|||++++.
T Consensus 277 ~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 277 AG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred cC-CEEEEEcCCcceeeeeee
Confidence 22 599999999999999887
No 253
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=48.59 E-value=74 Score=37.53 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.1
Q ss_pred ceEEEEEccCccEEEEEEE
Q psy7140 560 MSVIGIDFGTESCYLSVAK 578 (1304)
Q Consensus 560 ~~vvGID~Gtt~s~va~~~ 578 (1304)
..++.||||.||.++|.+.
T Consensus 75 g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CCEEEEecCCceEEEEEEE
Confidence 4699999999999999876
No 254
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=48.37 E-value=16 Score=40.52 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.8
Q ss_pred EEEEEccCccEEEEEEECC
Q psy7140 562 VIGIDFGTESCYLSVAKSG 580 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g 580 (1304)
++|||+|||++++++++..
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 6999999999999998743
No 255
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=48.29 E-value=17 Score=36.24 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=18.8
Q ss_pred CcEEEEEcCcccEEEEEEeCCc
Q psy7140 1 MSVIGIDFGTESCYLSVAKSGG 22 (1304)
Q Consensus 1 m~viGID~GTt~s~va~~~~g~ 22 (1304)
|.++|+|+||-.+.||+.....
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 7899999999999999876543
No 256
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=47.65 E-value=20 Score=41.05 Aligned_cols=52 Identities=8% Similarity=0.219 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHH----HHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcCCC
Q psy7140 332 KRNDLETLCEHIF----GRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 391 (1304)
Q Consensus 332 tr~~fe~~~~~~~----~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~~~ 391 (1304)
+.++.+++...++ .++.+.++.++.+.+.++ +..||.. |.+-..+.+.+|.+
T Consensus 246 ~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp------v~~gGaG--~~~a~~lA~~lg~~ 301 (318)
T TIGR03123 246 GEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKT------VVAAGAG--EFLAKEAAARLGRE 301 (318)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecch--HHHHHHHHHHcCCC
Confidence 3345555555544 345566666666656554 5566666 77777777777743
No 257
>KOG0678|consensus
Probab=47.55 E-value=2.6e+02 Score=31.81 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=56.4
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHcCCCeEEee---chhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEEEE
Q psy7140 168 HDCVLAVPSYFTNNERKALLTAASIAGLNVLRLI---NETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAA 244 (1304)
Q Consensus 168 ~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~~li---~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 244 (1304)
....+|-|..=.+.-|.-+.+..-. -++|..|. .--.|-|+.|. ..... +..-.=+|+|-|.|-+-+-.+
T Consensus 107 h~fLlteppln~penreytaeImfE-sfnvpglyiAVqavLALaaswt--s~~v~---er~ltG~VidsGdgvThvipv- 179 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYIAVQAVLALAASWT--SRQVG---ERFLTGIVIDSGDGVTHVIPV- 179 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhh-hccCchHHHHHHHHHHHHHHHH--Hhhhh---hheeeeEEEecCCCeeEEEEe-
Confidence 3568888888888888777665433 24444332 22222233332 22211 112234689999997765443
Q ss_pred EECCeEEEEEEecCCCcccHHHHHHHHHHH
Q psy7140 245 FVKGKLKVLSNVCDSEIGGRNIDKILAEYI 274 (1304)
Q Consensus 245 ~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l 274 (1304)
.+| +-+.+.-....+.|+|++.-+...+
T Consensus 180 -aEg-yVigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 180 -AEG-YVIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred -ecc-eEEeeeeccccccCCchhHHHHHHh
Confidence 333 3334444577999999998877766
No 258
>KOG0994|consensus
Probab=46.79 E-value=4.2e+02 Score=35.24 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=16.5
Q ss_pred eEEEeecCCCCHHHHHHHHHH
Q psy7140 698 DCVLAVPSYFTNNERKALLTA 718 (1304)
Q Consensus 698 ~~VitVP~~f~~~qr~~l~~A 718 (1304)
.+-..+|.||.+.-|+.-.+.
T Consensus 999 hCe~Ck~Gf~GdA~~q~CqrC 1019 (1758)
T KOG0994|consen 999 HCEHCKDGFYGDALRQNCQRC 1019 (1758)
T ss_pred chhhccccchhHHHHhhhhhh
Confidence 566788999999888776665
No 259
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=46.79 E-value=57 Score=38.39 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=16.0
Q ss_pred cEEEEEcCcccEEEEEEe
Q psy7140 2 SVIGIDFGTESCYLSVAK 19 (1304)
Q Consensus 2 ~viGID~GTt~s~va~~~ 19 (1304)
+++.||||.||..||.+.
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 489999999999999874
No 260
>PRK03011 butyrate kinase; Provisional
Probab=46.65 E-value=53 Score=38.56 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=36.3
Q ss_pred cccEEEEEcCCCCchhHHHHHHHhcC----CCCCCCCCchhHHHHHHHHH
Q psy7140 364 AIHSIEIVGGSSRIPAFKNVIESVFH----KPPSTTLNQDEAVSRGCALQ 409 (1304)
Q Consensus 364 ~i~~ViLvGG~sr~p~v~~~l~~~f~----~~~~~~~np~eaVa~Gaa~~ 409 (1304)
++|.|+|.||.+..+.+++.|++.+. ..+....+-.+|.+.||+-.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 57899999999999999998888775 23345566678999997654
No 261
>PRK09698 D-allose kinase; Provisional
Probab=45.33 E-value=2e+02 Score=32.92 Aligned_cols=37 Identities=8% Similarity=-0.094 Sum_probs=25.0
Q ss_pred cCCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCC
Q psy7140 193 AGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYS 236 (1304)
Q Consensus 193 AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~Ggg 236 (1304)
.|++ +.+.|+..|||++-..... ....+++++.+|.|
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~------~~~~~~~~v~lgtG 140 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN------LTQQLVLGAYLGTG 140 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC------CCCceEEEEEecCc
Confidence 4776 5899999999987543221 12346788888866
No 262
>PRK14878 UGMP family protein; Provisional
Probab=45.02 E-value=5.5e+02 Score=29.73 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=29.0
Q ss_pred eeEEEEecCCCCChhHHHHHHHHc---CCCCCCCC---CchhHHHh
Q psy7140 894 IHSIEIVGGSSRIPAFKNVIESVF---HKPPSTTL---NQDEAVSR 933 (1304)
Q Consensus 894 I~~V~LvGG~srip~v~~~l~~~f---g~~~~~~~---n~~eava~ 933 (1304)
+..|+|+||.+...++++.|.+.+ |.++..+. --|.+++.
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 578999999999999999999977 44433222 33555555
No 263
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=44.69 E-value=5.4e+02 Score=29.60 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy7140 1103 RVDAKNALEEYVYELRDGLA 1122 (1304)
Q Consensus 1103 ~~~akN~LEs~iy~~r~~L~ 1122 (1304)
+..||-...+..|+.|.++-
T Consensus 123 K~~aRl~ak~~WYeWR~kll 142 (312)
T smart00787 123 KTFARLEAKKMWYEWRMKLL 142 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999999886
No 264
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=44.16 E-value=1.1e+02 Score=35.22 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhh
Q psy7140 1140 KLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEY 1181 (1304)
Q Consensus 1140 ~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 1181 (1304)
+|+++++||-++ +. +++.+.+++.+-++..-|+--++.|+
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeF 48 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEF 48 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHH
Confidence 578999999853 44 89999999999999999997665553
No 265
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=44.09 E-value=7.4e+02 Score=30.96 Aligned_cols=51 Identities=8% Similarity=0.041 Sum_probs=37.3
Q ss_pred ccEEEEEcCCCCchhHHHHHHHhc---CCCCCCC---CCchhHHHHHHHHHhhHhcC
Q psy7140 365 IHSIEIVGGSSRIPAFKNVIESVF---HKPPSTT---LNQDEAVSRGCALQCAILSP 415 (1304)
Q Consensus 365 i~~ViLvGG~sr~p~v~~~l~~~f---~~~~~~~---~np~eaVa~Gaa~~aa~ls~ 415 (1304)
++.|+|+||.....++++.|.+.+ +.++..+ .--|.++++|+|.+....++
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 568999999999999999999665 3333222 25578999998876654443
No 266
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=43.61 E-value=66 Score=26.93 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=32.1
Q ss_pred HHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHHHcCCce
Q psy7140 685 KDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNV 726 (1304)
Q Consensus 685 ~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~AGl~~ 726 (1304)
.+..+++.... ....++.|+.++..+|..+.+.|+..||..
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 34445554333 367789999999999999999999999976
No 267
>PRK04863 mukB cell division protein MukB; Provisional
Probab=43.49 E-value=7e+02 Score=35.39 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy7140 861 KRNDLETLCEHIF-GRIEICLNKCIAES 887 (1304)
Q Consensus 861 tr~efe~l~~~~~-~~i~~~i~~~l~~~ 887 (1304)
.|+.|..++..-+ .++...|.+.+.+.
T Consensus 193 dR~kF~kLf~taiy~~i~~~i~~fl~~y 220 (1486)
T PRK04863 193 DRSKFYRLIEASLYGGISSAITRSLRDY 220 (1486)
T ss_pred hHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 3566666665432 35555555555443
No 268
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=43.39 E-value=23 Score=35.30 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.8
Q ss_pred cceEEEEEccCccEEEEEEECC
Q psy7140 559 IMSVIGIDFGTESCYLSVAKSG 580 (1304)
Q Consensus 559 ~~~vvGID~Gtt~s~va~~~~g 580 (1304)
+|.++|||||+-.+.||+....
T Consensus 1 ~~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 1 GMRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred CceEEEEecCCceEEEEEecCC
Confidence 3679999999999999987654
No 269
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=42.25 E-value=90 Score=26.17 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=32.3
Q ss_pred HHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCeE
Q psy7140 156 KDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVL 198 (1304)
Q Consensus 156 k~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~~ 198 (1304)
.+..+.+.... ....++.|..++..+|..+.+.|...||...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 34444554433 3567899999999999999999999999763
No 270
>KOG2708|consensus
Probab=41.60 E-value=4.8e+02 Score=28.04 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=36.5
Q ss_pred ecHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHc
Q psy7140 860 LKRNDLE-TLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF 917 (1304)
Q Consensus 860 itr~efe-~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~f 917 (1304)
.|.+++- ++-+.++.-+.+.-++++...+- +.|++|||....-.+|+++..+.
T Consensus 225 ~t~~DLCySLQEtvFamLVEiTERAMAh~~s-----~evLIVGGVGCN~RLQeMM~~Mc 278 (336)
T KOG2708|consen 225 VTKEDLCYSLQETVFAMLVEITERAMAHCGS-----KEVLIVGGVGCNERLQEMMAIMC 278 (336)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CcEEEEecccccHHHHHHHHHHH
Confidence 4444442 23334555556666677665542 67999999999999999998887
No 271
>KOG0994|consensus
Probab=41.03 E-value=5.8e+02 Score=34.07 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy7140 1103 RVDAKNALEEYVYELRDGLA 1122 (1304)
Q Consensus 1103 ~~~akN~LEs~iy~~r~~L~ 1122 (1304)
.+++..+|+.+|-++|+.|+
T Consensus 1466 ~~~s~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1466 MEESNRELRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34566677888888888886
No 272
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=40.52 E-value=19 Score=41.33 Aligned_cols=52 Identities=8% Similarity=0.219 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHcCCC
Q psy7140 861 KRNDLETLCEHIF----GRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 920 (1304)
Q Consensus 861 tr~efe~l~~~~~----~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~fg~~ 920 (1304)
+.++.+++...++ ..+.+.+++++.+.+.++ +..||+. |.+-..+.+.+|.+
T Consensus 246 ~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~Dp------v~~gGaG--~~~a~~lA~~lg~~ 301 (318)
T TIGR03123 246 GEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGLKT------VVAAGAG--EFLAKEAAARLGRE 301 (318)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------eEEecch--HHHHHHHHHHcCCC
Confidence 3445555555444 455666666666666554 5566666 77777788877754
No 273
>KOG0964|consensus
Probab=40.49 E-value=4.2e+02 Score=34.69 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhccC
Q psy7140 1184 RPNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWIEEKVSKLKSL 1244 (1304)
Q Consensus 1184 rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~ 1244 (1304)
|..++..++.........-..+....|+|..+.++|- .+...+...+.-..+.+++|...
T Consensus 323 r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~-~~~~rl~~l~~~~~~l~~Kqgr~ 382 (1200)
T KOG0964|consen 323 RNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEK-RLKKRLAKLEQKQRDLLAKQGRY 382 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHH-HHHHHHHHHHHHHHHHHHhhccc
Confidence 4444444444444444444444444566665555543 23444455555555555555543
No 274
>KOG0250|consensus
Probab=40.18 E-value=6.3e+02 Score=33.69 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=26.4
Q ss_pred HHHHHHhhccCCCCCCCcc---------CHHHHHHHHHHHHHHHHHh
Q psy7140 1234 IEEKVSKLKSLPKHENPPI---------TCDQIREEKYKFEKSVWSV 1271 (1304)
Q Consensus 1234 l~~~~~~q~~~~~~~dP~~---------~~~di~~k~~~l~~~~~~l 1271 (1304)
+.+..+.+...+.+..|-. ++++|...++.|.+.++..
T Consensus 837 ~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ 883 (1074)
T KOG0250|consen 837 LEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMC 883 (1074)
T ss_pred hhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777776 3688888888888877654
No 275
>KOG0996|consensus
Probab=40.10 E-value=9.3e+02 Score=32.48 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=13.5
Q ss_pred ccCChHHHHHHHHHHhhhccC
Q psy7140 1076 HYLANIKVHDLFELECKMQDN 1096 (1304)
Q Consensus 1076 ~~ls~~ei~~~~~~~~~~~~~ 1096 (1304)
.+.|.+.++.+-+.+.+|...
T Consensus 773 t~~s~~~v~~le~~l~~~~~~ 793 (1293)
T KOG0996|consen 773 TGVSKESVEKLERALSKMSDK 793 (1293)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 366777777776666655443
No 276
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=39.85 E-value=23 Score=36.48 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=17.3
Q ss_pred CcEEEEEcCcccEEEEEEe
Q psy7140 1 MSVIGIDFGTESCYLSVAK 19 (1304)
Q Consensus 1 m~viGID~GTt~s~va~~~ 19 (1304)
|.|+|||-|++++..|+..
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 7899999999999999865
No 277
>PRK09557 fructokinase; Reviewed
Probab=39.80 E-value=6.1e+02 Score=28.81 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=24.8
Q ss_pred CCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCC
Q psy7140 194 GLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYS 236 (1304)
Q Consensus 194 Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~Ggg 236 (1304)
|++ +.+.|+..|+|++-...... ...++++.+.+|.|
T Consensus 97 ~~p-v~~~NDa~aaA~aE~~~g~~-----~~~~~~~~l~igtG 133 (301)
T PRK09557 97 NRE-VRLANDANCLAVSEAVDGAA-----AGKQTVFAVIIGTG 133 (301)
T ss_pred CCC-EEEccchhHHHHHHHHhccc-----CCCCcEEEEEEccc
Confidence 776 57999999999886443221 23356777788755
No 278
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=39.69 E-value=84 Score=33.74 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=33.5
Q ss_pred CCcEEEEEEeCCceeEEEEEEEECC-eEEEEEEecCCC---CCcHHHHHHHHHHHHHHH
Q psy7140 753 NPRYVAFVDFGYSALQVCIAAFVKG-KLKVLSNVCDSE---IGGRNIDKILAEYISTDF 807 (1304)
Q Consensus 753 ~~~~vlv~D~Gggt~dvsvv~~~~~-~~~v~~~~~~~~---lGG~~~D~~l~~~l~~~~ 807 (1304)
....+|.+|+||.++-+.+|++.++ .+++....+..+ .-|.. ..|.+|+++.+
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i 117 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCI 117 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHH
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHH
Confidence 4467999999999999999999976 444433332211 00111 55667776654
No 279
>PRK09698 D-allose kinase; Provisional
Probab=38.73 E-value=2.5e+02 Score=32.09 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=30.0
Q ss_pred ceeEEEEecCCCCC-----hhHHHHHHHHcCC-------CCCCCCCchhHHHhHHHHHhh
Q psy7140 893 AIHSIEIVGGSSRI-----PAFKNVIESVFHK-------PPSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 893 ~I~~V~LvGG~sri-----p~v~~~l~~~fg~-------~~~~~~n~~eava~Gaa~~aa 940 (1304)
+.+.|+|-||.++. +.+++.+++..-. ++......+.+.++|||..+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 34778888877764 3455666655421 123344557788999998764
No 280
>KOG2708|consensus
Probab=38.45 E-value=3.5e+02 Score=29.01 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=35.7
Q ss_pred EcHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcC
Q psy7140 331 LKRNDLE-TLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH 389 (1304)
Q Consensus 331 itr~~fe-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~ 389 (1304)
.|.+++- .+-+.++.-+.+.-++++...+ -+.|++|||....-.+|+++..+..
T Consensus 225 ~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~ 279 (336)
T KOG2708|consen 225 VTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCS 279 (336)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHH
Confidence 4444433 2233344455555566665443 3679999999999999999988874
No 281
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=37.40 E-value=66 Score=41.51 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=37.7
Q ss_pred ceeEEEEecCCCCChhHHHHHHHHcC---CCCCC---CCCchhHHHhHHHHHhh
Q psy7140 893 AIHSIEIVGGSSRIPAFKNVIESVFH---KPPST---TLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 893 ~I~~V~LvGG~srip~v~~~l~~~fg---~~~~~---~~n~~eava~Gaa~~aa 940 (1304)
.++.|+|+||..+...+.+.|.+.++ .++.. ..--|.+++.|.|+.||
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998874 33322 23568899999988774
No 282
>PHA02566 alt ADP-ribosyltransferase; Provisional
Probab=37.34 E-value=8.9e+02 Score=30.61 Aligned_cols=56 Identities=4% Similarity=-0.086 Sum_probs=41.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCHHHHHHHHHHHHHHHHH
Q psy7140 1211 RFSHLSKQDLSTVETAIKQHVKWIEEKVSKLKSLPKHENPPITCDQIREEKYKFEKSVWS 1270 (1304)
Q Consensus 1211 ~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~ 1270 (1304)
.+.++|.+|+..|.+-+..-=.|.|+-+.....-..+ ..-.++++.++.|++-+++
T Consensus 421 ~~k~LT~~E~~AI~dY~~sgY~~IN~yLrG~~~s~~~----~~~~ei~k~Ik~IDsAf~k 476 (684)
T PHA02566 421 DPKKLTPAESRAIREYCASGYIDINNFLLGRYKPEFY----MDEEEAEKAIDNLDSAFKN 476 (684)
T ss_pred CcccCCHHHHHHHHHHHHhhHHHHHHHHhcCCCcccc----cChHHHHHHHHHHHHHHhc
Confidence 5678999999999999999989999988533321111 3345788888888888776
No 283
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.86 E-value=1.3e+02 Score=32.83 Aligned_cols=66 Identities=6% Similarity=0.156 Sum_probs=38.6
Q ss_pred eeechhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHH
Q psy7140 728 RLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYI 803 (1304)
Q Consensus 728 ~li~Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l 803 (1304)
.+++.-.||+....+. ......+|+|+|-|++..+++. .+.+.-+.......+.-+.|...|.++.
T Consensus 208 v~mDskfaav~gal~d--------paa~palvVd~GngHttaalvd--edRI~gv~EHHT~~Lspekled~I~rf~ 273 (342)
T COG4012 208 VAMDSKFAAVMGALVD--------PAADPALVVDYGNGHTTAALVD--EDRIVGVYEHHTIRLSPEKLEDQIIRFV 273 (342)
T ss_pred EEEcchhHhhhhcccC--------cccCceEEEEccCCceEEEEec--CCeEEEEeecccccCCHHHHHHHHHHHH
Confidence 4455555555544442 1234699999999999998864 3455444444444555554444444444
No 284
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.57 E-value=5.6e+02 Score=27.08 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=26.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q psy7140 1184 RPNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWIEEKV 1238 (1304)
Q Consensus 1184 rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~ 1238 (1304)
-|+.++.++..+..++..+..|. +-+.....|+..+.
T Consensus 133 Dp~~i~~~~~~~~~~~~~anrwT------------------DNI~~l~~~~~~k~ 169 (188)
T PF03962_consen 133 DPEKIEKLKEEIKIAKEAANRWT------------------DNIFSLKSYLKKKF 169 (188)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHhc
Confidence 48888888888888877766654 55677777877643
No 285
>PRK04863 mukB cell division protein MukB; Provisional
Probab=35.51 E-value=5.9e+02 Score=36.09 Aligned_cols=27 Identities=4% Similarity=-0.058 Sum_probs=14.5
Q ss_pred CCCChhhHHHHHH----HHHHHHHHHHHHHH
Q psy7140 1213 SHLSKQDLSTVET----AIKQHVKWIEEKVS 1239 (1304)
Q Consensus 1213 ~~~t~~e~~~l~~----~~~~~~~Wl~~~~~ 1239 (1304)
+.+|.++++.... ...+...++.+...
T Consensus 433 ~~~SdEeLe~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 433 PDLTADNAEDWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578777665433 44444445554444
No 286
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=35.50 E-value=52 Score=42.38 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=37.5
Q ss_pred cccEEEEEcCCCCchhHHHHHHHhcC---CCCCC---CCCchhHHHHHHHHHhh
Q psy7140 364 AIHSIEIVGGSSRIPAFKNVIESVFH---KPPST---TLNQDEAVSRGCALQCA 411 (1304)
Q Consensus 364 ~i~~ViLvGG~sr~p~v~~~l~~~f~---~~~~~---~~np~eaVa~Gaa~~aa 411 (1304)
.++.|+|+||..+...+++.|.+.+. .++.. ..--|.++++|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998774 22222 23458899999998875
No 287
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=35.45 E-value=1.3e+02 Score=32.44 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=23.5
Q ss_pred CcEEEEEEecCCeEEEEEEEEECC-eEEEE
Q psy7140 225 PRYVAFVDFGYSALQVCIAAFVKG-KLKVL 253 (1304)
Q Consensus 225 ~~~vlV~D~GggT~dvsv~~~~~~-~~~v~ 253 (1304)
...+|++|+||.++=++++++.++ .+++.
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L~g~~~~~~~ 91 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVELSGNGKVEIE 91 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEEESSSEEEEE
T ss_pred CceEEEEeecCcEEEEEEEEEcCCCCceee
Confidence 356899999999999999999876 44443
No 288
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=35.29 E-value=31 Score=35.49 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.2
Q ss_pred cceEEEEEccCccEEEEEEEC
Q psy7140 559 IMSVIGIDFGTESCYLSVAKS 579 (1304)
Q Consensus 559 ~~~vvGID~Gtt~s~va~~~~ 579 (1304)
+|.|+|||-|++++..|+...
T Consensus 1 ~m~iLGIDPgl~~tG~avi~~ 21 (164)
T PRK00039 1 MMRILGIDPGLRRTGYGVIEV 21 (164)
T ss_pred CCEEEEEccccCceeEEEEEe
Confidence 478999999999999998753
No 289
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.83 E-value=6.5e+02 Score=32.68 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhccchHHHHHHhhcc-ChhHHHHHHHHHHHHHHHH
Q psy7140 1158 SVYNDRLNSLRTVGDPVKMRAMEYAM-RPNILEEYKHSVQSAKNIV 1202 (1304)
Q Consensus 1158 ~~~~~kl~~L~~~~~~i~~R~~e~~~-rp~~~~~l~~~l~~~~~~~ 1202 (1304)
++..++.+.|.+-++.+..+.....- --.+-.++.+.|..++..+
T Consensus 603 e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l 648 (717)
T PF10168_consen 603 EEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665543321 1123334444444444433
No 290
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=34.61 E-value=8.1e+02 Score=28.66 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhHHHHHHHhcC
Q psy7140 345 GRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH 389 (1304)
Q Consensus 345 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v~~~l~~~f~ 389 (1304)
+-+.+.+.++++.. .+..++++||-+...++|+.|++...
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 33444555555543 35789999999999999999999873
No 291
>PRK14878 UGMP family protein; Provisional
Probab=34.47 E-value=7.8e+02 Score=28.46 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCchhHHHHHHHhc
Q psy7140 365 IHSIEIVGGSSRIPAFKNVIESVF 388 (1304)
Q Consensus 365 i~~ViLvGG~sr~p~v~~~l~~~f 388 (1304)
+..|+|+||.+...++++.+.+.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 568999999999999999999876
No 292
>PLN02920 pantothenate kinase 1
Probab=34.23 E-value=3.3e+02 Score=32.21 Aligned_cols=49 Identities=10% Similarity=-0.086 Sum_probs=34.8
Q ss_pred CceeEEEEecCCCCCh-hHHHHHHHHc---C---CCCCCCCCchhHHHhHHHHHhh
Q psy7140 892 NAIHSIEIVGGSSRIP-AFKNVIESVF---H---KPPSTTLNQDEAVSRGCALQCA 940 (1304)
Q Consensus 892 ~~I~~V~LvGG~srip-~v~~~l~~~f---g---~~~~~~~n~~eava~Gaa~~aa 940 (1304)
..++.|+++|+..|.+ ..++.|.-.+ . .+....-+....-|+||.+...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 4578999999999998 6676554433 2 2334455778889999987643
No 293
>KOG1029|consensus
Probab=34.23 E-value=8.8e+02 Score=30.97 Aligned_cols=15 Identities=13% Similarity=0.570 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy7140 1134 RNVLNKKLDETENWL 1148 (1304)
Q Consensus 1134 r~~i~~~l~e~~~WL 1148 (1304)
|+.+..+-++-.+|+
T Consensus 418 ~qem~~Qk~reqe~i 432 (1118)
T KOG1029|consen 418 RQEMLNQKNREQEWI 432 (1118)
T ss_pred HHHHHhhhhHHHHHH
Confidence 334444444555555
No 294
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.39 E-value=2.3e+02 Score=29.35 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=50.0
Q ss_pred cCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhccC------hhHHHHHHHHHHHHHHHH
Q psy7140 1129 ITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAMR------PNILEEYKHSVQSAKNIV 1202 (1304)
Q Consensus 1129 ~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~r------p~~~~~l~~~l~~~~~~~ 1202 (1304)
.++++...+...+.++.+=+ .+|+..+..+...+...... ...++.+...+.....-+
T Consensus 69 ~s~eel~~ld~ei~~L~~el----------------~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREEL----------------AELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred CCchhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666555544433 33333333333333333333 345556666666666666
Q ss_pred HHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q psy7140 1203 DAAFKGDDRFSHLSKQDLSTVETAIKQHVKWIE 1235 (1304)
Q Consensus 1203 ~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~ 1235 (1304)
..+... ...++++|++.+.+........|.
T Consensus 133 ~~l~~~---~~~vs~ee~~~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 133 EKLRSG---SKPVSPEEKEKLEKEYKKWRKEWK 162 (169)
T ss_pred HHHHhC---CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 666542 345899999999887777665443
No 295
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=32.41 E-value=4e+02 Score=29.55 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=25.3
Q ss_pred CCCeEEeechhHHHHHHhhhhcCCCCCCCCCCcEEEEEEecCC
Q psy7140 194 GLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYS 236 (1304)
Q Consensus 194 Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~~~vlV~D~Ggg 236 (1304)
|++ +.+-|+..|+|++....... ...++++++-+|-|
T Consensus 97 ~~p-V~leNDanaaAlaE~~~g~~-----~~~~~~v~i~lgtG 133 (256)
T PRK13311 97 QRE-VRIDNDANCFALSEAWDPEF-----RTYPTVLGLILGTG 133 (256)
T ss_pred CCC-EEEEchhhHHHHHHHHhcCC-----CCCCcEEEEEECcC
Confidence 776 47999999999987553321 23456777778755
No 296
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=32.06 E-value=1.1e+03 Score=29.59 Aligned_cols=115 Identities=15% Similarity=0.213 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhc---chhccccC--HHhHHHHHHHHHHHHHHHhhcCCC
Q psy7140 1080 NIKVHDLFELECKMQDNDRQEKDRVDAKNALEEYVYELRDGLA---NDKADFIT--DSNRNVLNKKLDETENWLYEEGQD 1154 (1304)
Q Consensus 1080 ~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~---~~~~~~~~--~~er~~i~~~l~e~~~WL~~~g~~ 1154 (1304)
.+++..+.+.+..+...++.-|. +-..|.....++|..|. ..|...+. ++..+.+....++..+|... |+-
T Consensus 114 e~~i~~i~~~l~~L~~~e~~nr~---~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~-GD~ 189 (560)
T PF06160_consen 114 EEDIKEILDELDELLESEEKNRE---EIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTEN-GDY 189 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHC-CCH
Confidence 44555555555555554444333 22334444455566664 22333322 45566677777777777753 322
Q ss_pred C----CHHHHHHHHHHHHhccchHHHHHHhhc-cChhHHHHHHHHHHHH
Q psy7140 1155 V----NRSVYNDRLNSLRTVGDPVKMRAMEYA-MRPNILEEYKHSVQSA 1198 (1304)
Q Consensus 1155 a----~~~~~~~kl~~L~~~~~~i~~R~~e~~-~rp~~~~~l~~~l~~~ 1198 (1304)
. -...+++.+..|+.....|-.-+.+.. ..|..+++|+.-...+
T Consensus 190 ~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m 238 (560)
T PF06160_consen 190 LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREM 238 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 233556666777777777766666633 5676666666544443
No 297
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.89 E-value=5.7e+02 Score=29.66 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhh
Q psy7140 1102 DRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEY 1181 (1304)
Q Consensus 1102 ~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~ 1181 (1304)
-+..||-......|+.|-++.+.+...+ .+..+.+......+..++.- -+.-...+.++...|+.-..-+..+..+.
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L-~~~~~~L~~D~~~L~~~~~~--l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~ 203 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGL-EENLELLQEDYAKLDKQLEQ--LDELLPKLRERKAELEEELENLKQLVEEI 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455666666777777777763333222 22233333333333333321 00112233334444444444333333333
Q ss_pred c-cChhHHHHHHHHHHHHHHHHH
Q psy7140 1182 A-MRPNILEEYKHSVQSAKNIVD 1203 (1304)
Q Consensus 1182 ~-~rp~~~~~l~~~l~~~~~~~~ 1203 (1304)
. ..+..++.+++.|.....-+.
T Consensus 204 ~~~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 204 ESCDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHH
Confidence 3 345555666666555554444
No 298
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=31.82 E-value=8e+02 Score=27.78 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=50.6
Q ss_pred HhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy7140 1132 SNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAFKGDDR 1211 (1304)
Q Consensus 1132 ~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~~~~~~~ 1211 (1304)
++|+.|++.+.++.+= ..++..++++|.+....+.....++..-+..+..+...|.........
T Consensus 62 ~~rdeineev~elK~k---------R~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T------- 125 (294)
T COG1340 62 EERDEINEEVQELKEK---------RDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQT------- 125 (294)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHh-------
Confidence 4566666666665543 335667777777777777666666644455566666666665543321
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHH
Q psy7140 1212 FSHLSKQDLSTVETAIKQHVKWIEE 1236 (1304)
Q Consensus 1212 ~~~~t~~e~~~l~~~~~~~~~Wl~~ 1236 (1304)
..+|.++=..|...|.+...-|+.
T Consensus 126 -~~L~~e~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 126 -SVLTPEEERELVQKIKELRKELED 149 (294)
T ss_pred -cCCChHHHHHHHHHHHHHHHHHHH
Confidence 234555555555555555555544
No 299
>PRK07058 acetate kinase; Provisional
Probab=31.73 E-value=1.2e+02 Score=35.89 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCC-CChhHHHHHHHHc
Q psy7140 869 CEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSS-RIPAFKNVIESVF 917 (1304)
Q Consensus 869 ~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~s-rip~v~~~l~~~f 917 (1304)
++-++.++.+.|-...... ..+|.|+++||-+ ..+.|++.+.+.+
T Consensus 298 ~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l 343 (396)
T PRK07058 298 LDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERL 343 (396)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhh
Confidence 4445556666555554433 3589999999999 9999999998876
No 300
>PRK07058 acetate kinase; Provisional
Probab=31.35 E-value=2.5e+02 Score=33.29 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcccEEEEEcCCC-CchhHHHHHHHhcC
Q psy7140 339 LCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSS-RIPAFKNVIESVFH 389 (1304)
Q Consensus 339 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-r~p~v~~~l~~~f~ 389 (1304)
.++-++.++.+.|-...... ..+|.|+++||-. ..+.|++.|.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 44556666666665554432 3589999999999 99999999998764
No 301
>PF13941 MutL: MutL protein
Probab=31.12 E-value=37 Score=40.93 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=25.8
Q ss_pred EEEEEccCccEEEEEEE--CCceEEEeCCCCCcccceEE
Q psy7140 562 VIGIDFGTESCYLSVAK--SGGIETIVNDYSLRSTPSCV 598 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~--~g~~~ii~n~~~~r~~Ps~V 598 (1304)
++-+|||||+|++..+. .+..+++ +.-..||.|
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv 36 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV 36 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc
Confidence 68899999999999998 6677777 344556655
No 302
>PRK13318 pantothenate kinase; Reviewed
Probab=30.57 E-value=47 Score=37.16 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=17.6
Q ss_pred EEEEEcCcccEEEEEEeCCc
Q psy7140 3 VIGIDFGTESCYLSVAKSGG 22 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~g~ 22 (1304)
+++||+|.|+++++++.+|+
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 78999999999999988543
No 303
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=30.51 E-value=8.7e+02 Score=27.79 Aligned_cols=214 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred eCHHHHHHHHHHHHHHHHHhhhc------cccceEEEee-cCCCCHHHHHHHHHHHHHcCCceeeeechhHHHHHHhccc
Q psy7140 671 FSPEQLTAMLFTKLKDISENEIQ------NKVHDCVLAV-PSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIY 743 (1304)
Q Consensus 671 ~~~eel~a~~L~~l~~~a~~~~~------~~~~~~VitV-P~~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~ 743 (1304)
+.|+.....-.+.|....++.+. ..+..+++|. |..|+. -|-.+--|-.+|-.-.+.++.=+.-.+.+|.-.
T Consensus 39 i~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tg-lrvg~~~Ak~la~~~~~p~~~v~hl~~ha~~a~ 117 (305)
T TIGR00329 39 VVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGS-LRVGATFARSLALSLDKPLIGVNHLLGHIYAPR 117 (305)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhh-HHHHHHHHHHHHHHhCCCEeecccHHHHHHHhh
Q ss_pred cCCCCCCCCC--CcEEEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Q psy7140 744 KQDLPEDDQN--PRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARA 821 (1304)
Q Consensus 744 ~~~~~~~~~~--~~~vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~ 821 (1304)
.. .. ....+++=+=||++.+.+++-. +.+++++...|..+| .+...+..-.+.. .....+
T Consensus 118 ~~------s~~~~~~~l~l~vsGG~t~l~~~~~~-~~~~~l~~t~d~S~G----------rlfD~va~lLGl~-y~g~~~ 179 (305)
T TIGR00329 118 LD------TNILQFPFVSLLVSGGHTQIIAVKGI-GDYEVLGETLDDAVG----------EAFDKVARLLGLG-YPGGPK 179 (305)
T ss_pred hh------cCCCCCCcEEEEEcCCceEEEEEeCC-CcEEEeeeecCchhh----------HHHHHHHHHcCCC-CCChHH
Q ss_pred HHHHHHHHHHHHHHhccCCceeeeEEeeecCCc-ceEEE-------------------ecHHHHHHHHHH-HHHHHHHHH
Q psy7140 822 YIRLLSEIEKLKKQMSANSNKLPLNIECFMDDK-DVHAE-------------------LKRNDLETLCEH-IFGRIEICL 880 (1304)
Q Consensus 822 ~~rL~~~ae~~K~~Ls~~~~~~~~~ie~l~~~~-d~~~~-------------------itr~efe~l~~~-~~~~i~~~i 880 (1304)
+..|... ......++.++....+. ++++. .++.++-..++. +.+-+.+.+
T Consensus 180 iE~lA~~---------~~~~~~~~~~~~~~~~~~~~s~sgl~~~~~~~~~~~~~~~~~~~~~~iAasfq~~l~~~l~~~~ 250 (305)
T TIGR00329 180 IEELAKK---------GDKLPFYFPLPYTVKPMLDFSFSGLKTAALRKIEKLKKNLNEATKEDIAYSFQETAFDHLIEKT 250 (305)
T ss_pred HHHHHhh---------CCCccccCCCccccCCCCcEEchHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhcCCCCCceeEEEEecCCCCChhHHHHHHHHc
Q psy7140 881 NKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF 917 (1304)
Q Consensus 881 ~~~l~~~~~~~~~I~~V~LvGG~srip~v~~~l~~~f 917 (1304)
+++++..++ +.|+|+||......+++.|.+.+
T Consensus 251 ~~~~~~~g~-----~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 251 KRALKDTGP-----KELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHcCC-----CEEEEECCHHHHHHHHHHHHHHH
No 304
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=30.29 E-value=2.1e+02 Score=29.59 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=52.0
Q ss_pred eCHHHHHHHHHHHHHHHHHhhhcCccceEEEeecCCCCHHH----------------HHHHHHHHHHcCCCeEEeechhH
Q psy7140 142 FSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNE----------------RKALLTAASIAGLNVLRLINETT 205 (1304)
Q Consensus 142 ~~~~el~~~~L~~lk~~a~~~~~~~~~~~vitVPa~~~~~q----------------r~~l~~A~~~AGl~~~~li~Ep~ 205 (1304)
.++++++..+...+.+..... +.. .+.|++|...+... .+.+.+. .+++ +.+.|+..
T Consensus 30 ~~~~~~~~~l~~~i~~~~~~~-~~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~~---~~~p-v~i~Nd~~ 102 (179)
T PF00480_consen 30 TSPEELLDALAELIERLLADY-GRS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEER---FGVP-VIIENDAN 102 (179)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH-TCE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHHH---HTSE-EEEEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhc-ccc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhcc---cceE-EEEecCCC
Confidence 456777777776666655443 222 55666665554332 2333333 3654 48899999
Q ss_pred HHHHHhhhhcCCCCCCCCCCcEEEEEEecCCeEEEEE
Q psy7140 206 ATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCI 242 (1304)
Q Consensus 206 AAal~y~~~~~~~~~~~~~~~~vlV~D~GggT~dvsv 242 (1304)
|+|++....... ...+.++.+-+|-| .-.++
T Consensus 103 ~~a~ae~~~~~~-----~~~~~~~~l~ig~G-iG~~i 133 (179)
T PF00480_consen 103 AAALAEYWFGAA-----KDCDNFLYLYIGTG-IGAGI 133 (179)
T ss_dssp HHHHHHHHHSTT-----TTTSSEEEEEESSS-EEEEE
T ss_pred cceeehhhcCcc-----CCcceEEEEEeecC-CCcce
Confidence 999988664332 12345777888876 44444
No 305
>PLN03237 DNA topoisomerase 2; Provisional
Probab=30.02 E-value=1e+02 Score=42.42 Aligned_cols=46 Identities=15% Similarity=0.069 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHH
Q psy7140 1186 NILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKW 1233 (1304)
Q Consensus 1186 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~W 1233 (1304)
+.+++|.+.+...+.-++.+.+..++.-| .+|++.|...+++...+
T Consensus 1126 E~~~kL~~~~~~k~~el~~l~~~t~~~lW--~~DLd~f~~~~~~~~~~ 1171 (1465)
T PLN03237 1126 EKVQELCADRDKLNIEVEDLKKTTPKSLW--LKDLDALEKELDKLDKE 1171 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554443333 34555555555554443
No 306
>KOG4603|consensus
Probab=29.68 E-value=2.8e+02 Score=28.19 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhccchHHHHHHhhc------cChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHH
Q psy7140 1158 SVYNDRLNSLRTVGDPVKMRAMEYA------MRPNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHV 1231 (1304)
Q Consensus 1158 ~~~~~kl~~L~~~~~~i~~R~~e~~------~rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~ 1231 (1304)
..|.+|++.|+..+.-+..-+.+.. +..+-++.|+......++-+..+... -.|+|++|++.+.+......
T Consensus 89 ~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g---~~~vtpedk~~v~~~y~~~~ 165 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAG---TNHVTPEDKEQVYREYQKYC 165 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCHHHHHHHHHHHHHHH
Confidence 3556666666666655554444332 22334445555555555555555433 46999999999998877665
Q ss_pred H
Q psy7140 1232 K 1232 (1304)
Q Consensus 1232 ~ 1232 (1304)
.
T Consensus 166 ~ 166 (201)
T KOG4603|consen 166 K 166 (201)
T ss_pred H
Confidence 4
No 307
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=29.61 E-value=3.8e+02 Score=24.15 Aligned_cols=23 Identities=4% Similarity=0.205 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHhccchHHH
Q psy7140 1154 DVNRSVYNDRLNSLRTVGDPVKM 1176 (1304)
Q Consensus 1154 ~a~~~~~~~kl~~L~~~~~~i~~ 1176 (1304)
..+...+...+++++.+...|..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~ei~~ 52 (105)
T PF00435_consen 30 GSDLEELEEQLKKHKELQEEIES 52 (105)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhhhhHHHH
Confidence 34566777777777766666644
No 308
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.57 E-value=8e+02 Score=27.38 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhc--cccCHHhHHHHHHHHHHHHHHH
Q psy7140 1103 RVDAKNALEEYVYELRDGLANDKA--DFITDSNRNVLNKKLDETENWL 1148 (1304)
Q Consensus 1103 ~~~akN~LEs~iy~~r~~L~~~~~--~~~~~~er~~i~~~l~e~~~WL 1148 (1304)
...+..+.+.++-+||.+ . |. ...-+.|.......|+.+..|+
T Consensus 125 l~~~l~ea~~mL~emr~r-~--f~~~~~~Ae~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 125 LQRALAEAQRMLEEMRKR-D--FTPQRQNAEDELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHHhc-c--chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666544 1 21 1123555666666666666666
No 309
>KOG0979|consensus
Probab=29.56 E-value=1.5e+03 Score=30.19 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCccCHHHHHHHH
Q psy7140 1224 ETAIKQHVKWIEEKVSKLKSLPKHENPPITCDQIREEK 1261 (1304)
Q Consensus 1224 ~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~ 1261 (1304)
++.+..+.+-+.+..+...+.+.+++|+....++..+.
T Consensus 338 q~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~ 375 (1072)
T KOG0979|consen 338 QKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEV 375 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHH
Confidence 34455555566666666666777777777776666544
No 310
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=29.15 E-value=4.3e+02 Score=33.99 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCCccCHHHHHHHHH
Q psy7140 1215 LSKQDLSTVETAIKQHVKWIEEKVSKLKSLP-KHENPPITCDQIREEKY 1262 (1304)
Q Consensus 1215 ~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~-~~~dP~~~~~di~~k~~ 1262 (1304)
|-..-+..|..++++-..++-++.++--+.| .+.-|.++..+|-+++.
T Consensus 127 L~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~ 175 (683)
T PF08580_consen 127 LWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMP 175 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhcc
Confidence 4556778888889999899888888777777 66688888888877664
No 311
>PLN02377 3-ketoacyl-CoA synthase
Probab=28.95 E-value=1.4e+02 Score=36.84 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEE-ecCCCCChhHHHHHHHHcCCC
Q psy7140 865 LETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEI-VGGSSRIPAFKNVIESVFHKP 920 (1304)
Q Consensus 865 fe~l~~~~~~~i~~~i~~~l~~~~~~~~~I~~V~L-vGG~srip~v~~~l~~~fg~~ 920 (1304)
++...++..+-+...++++|+++|+++++||.|+. +.+....|.+-.+|.+.+|..
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 44444555555677888999999999999999987 445556899999999999864
No 312
>PRK13321 pantothenate kinase; Reviewed
Probab=28.86 E-value=52 Score=36.74 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=17.3
Q ss_pred EEEEEcCcccEEEEEEeCC
Q psy7140 3 VIGIDFGTESCYLSVAKSG 21 (1304)
Q Consensus 3 viGID~GTt~s~va~~~~g 21 (1304)
+++||+|.|++++|++.++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999865
No 313
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=28.49 E-value=8.3e+02 Score=31.75 Aligned_cols=120 Identities=16% Similarity=0.235 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy7140 1134 RNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAFKGDDRFS 1213 (1304)
Q Consensus 1134 r~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 1213 (1304)
.+.....|++++.||. .|..+|..++.-+.-|..+-.-. .-...+-+..++..+.++..+.
T Consensus 39 ld~a~~e~d~le~~l~---------~y~~~L~~~~~di~~IE~qn~~L---qvq~~N~k~L~~eL~~Ll~~l~------- 99 (701)
T PF09763_consen 39 LDEALAECDELESWLS---------LYDVELNSVRDDIEYIESQNNGL---QVQSANQKLLLNELENLLDTLS------- 99 (701)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhcCch---hhHHHHHHHHHHHHHHHHHhcC-------
Confidence 3566777888888885 35556666666555554332221 1222233333344444443322
Q ss_pred CCChhhHHHH----------HHHHHHHHHHHHHHHHhhccCCCCCCCcc-CHHHHHHHHHHHHHHHHHhhc
Q psy7140 1214 HLSKQDLSTV----------ETAIKQHVKWIEEKVSKLKSLPKHENPPI-TCDQIREEKYKFEKSVWSVLN 1273 (1304)
Q Consensus 1214 ~~t~~e~~~l----------~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~-~~~di~~k~~~l~~~~~~l~~ 1273 (1304)
++++.+..| ...|.+...||...+..-.......+|-+ .+.-+.++...+++......+
T Consensus 100 -i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~~ 169 (701)
T PF09763_consen 100 -IPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFCK 169 (701)
T ss_pred -CCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 13446677788877776555444666666 888888888877766555443
No 314
>KOG0250|consensus
Probab=28.24 E-value=1.5e+03 Score=30.56 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHhccchHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q psy7140 1155 VNRSVYNDRLNSLRTVGDPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWI 1234 (1304)
Q Consensus 1155 a~~~~~~~kl~~L~~~~~~i~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl 1234 (1304)
.+...+++...++.+..+.|... -..++.++..+.++..-..... ..| .....++...++....-=
T Consensus 731 ~~~~~~~~l~~ei~~~~~eIe~~-------~~~~e~l~~e~e~~~~e~~e~~---~~~----~~~~~~l~~e~~~l~~l~ 796 (1074)
T KOG0250|consen 731 VDISKLEDLAREIKKKEKEIEEK-------EAPLEKLKEELEHIELEAQELE---EYY----AAGREKLQGEISKLDALK 796 (1074)
T ss_pred cchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHhhHHH
Confidence 34455555555555555555333 3344555555555443222221 112 223344444444444444
Q ss_pred HHHHHhhccCCCCCCCccCHHHHHH-HHHHHHHHHHHhhcCCCC
Q psy7140 1235 EEKVSKLKSLPKHENPPITCDQIRE-EKYKFEKSVWSVLNKPKP 1277 (1304)
Q Consensus 1235 ~~~~~~q~~~~~~~dP~~~~~di~~-k~~~l~~~~~~l~~kpkp 1277 (1304)
++....++++..++|--+.-.|+.+ ....+...=..+.+.++|
T Consensus 797 ~el~~r~dk~~s~e~~~~HyE~~~K~~l~~l~~~E~~~~~~e~~ 840 (1074)
T KOG0250|consen 797 EELKLREDKLRSAEDEKRHYEDKLKSRLEELKQKEVEKVNLEEP 840 (1074)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhhhcc
Confidence 4555666777777777777777766 455555544445555554
No 315
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=28.22 E-value=1.2e+03 Score=28.73 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHhc--chhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcc
Q psy7140 1100 EKDRVDAKNALEEYVYEL------RDGLA--NDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVG 1171 (1304)
Q Consensus 1100 ~~~~~~akN~LEs~iy~~------r~~L~--~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~ 1171 (1304)
...|.++.-.|...++++ .+.|+ ..-.+.+++.++..+...-.+. +. ...-..++..++.++...+
T Consensus 40 ~~~Raeqla~Ls~~~hel~T~~~~~elL~~l~~~~~~l~~~e~a~lr~~~r~~-----~~-~~~iP~elv~~~~~~~s~a 113 (494)
T PF02074_consen 40 AEARAEQLATLSGLIHELLTSPEIGELLEELEEEKEDLDEWERANLREMRRDY-----ER-ATKIPEELVEELARLTSEA 113 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHCSGSSTTHHHHHHHHHHHHHH-----HH-HHCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccCCCHHHHHHHHHHHHHH-----HH-HhCCCHHHHHHHHHHHHHH
Confidence 344566666666666664 22332 1112345666666655444332 12 2234567778999999999
Q ss_pred chHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHh
Q psy7140 1172 DPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAF 1206 (1304)
Q Consensus 1172 ~~i~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~~ 1206 (1304)
..+..++.+..........|++.+...+++...+.
T Consensus 114 ~~~W~~AR~~nDf~~F~P~Le~iv~l~re~a~~~~ 148 (494)
T PF02074_consen 114 EQAWEEARENNDFSAFAPYLEKIVELQREIAEYLG 148 (494)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999888887777777777777777777665443
No 316
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=28.16 E-value=1.3e+02 Score=33.33 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=37.7
Q ss_pred CCCceeEEEEecCCCCChhHHHHHHHHcC----CCCCCCCCchhHHHhHHHH
Q psy7140 890 PVNAIHSIEIVGGSSRIPAFKNVIESVFH----KPPSTTLNQDEAVSRGCAL 937 (1304)
Q Consensus 890 ~~~~I~~V~LvGG~srip~v~~~l~~~fg----~~~~~~~n~~eava~Gaa~ 937 (1304)
-+..+|.|+|+||.++...+-.+|.+... .-+....|-.+|.|.|+..
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 34678999999999999999999998874 2234556777899999753
No 317
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=27.88 E-value=2e+02 Score=29.66 Aligned_cols=88 Identities=18% Similarity=0.241 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHH----------------HHHHHHHHHHcCCceeeeechhHH
Q psy7140 672 SPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNE----------------RKALLTAASIAGLNVLRLINETTA 735 (1304)
Q Consensus 672 ~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~q----------------r~~l~~Aa~~AGl~~~~li~Ep~A 735 (1304)
++++++..+.+.+.+.....- .. .+.|++|...+... .+.+.+. .++ .+.+.|+..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~~---~~~-pv~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEER---FGV-PVIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHHH---HTS-EEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhcc---cce-EEEEecCCCc
Confidence 567777777777776665532 11 55556665443332 2333333 355 4588999999
Q ss_pred HHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEE
Q psy7140 736 TALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIA 772 (1304)
Q Consensus 736 aal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv 772 (1304)
+|++....... ...++++++-+|.| .-.+++
T Consensus 104 ~a~ae~~~~~~-----~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAA-----KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTT-----TTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCcc-----CCcceEEEEEeecC-CCccee
Confidence 99987654321 23456888888876 444544
No 318
>PRK10869 recombination and repair protein; Provisional
Probab=27.72 E-value=1.3e+03 Score=28.96 Aligned_cols=85 Identities=15% Similarity=0.099 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhcc
Q psy7140 1104 VDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAM 1183 (1304)
Q Consensus 1104 ~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~ 1183 (1304)
.++...||...+++++.+++ + ...|++.+.+.+.+..+..--...| .+.+++.+.+++++ .++.+...
T Consensus 271 ~~~~~~l~~~~~~l~~~~~~-~--~~dp~~l~~ie~Rl~~l~~L~rKyg--~~~~~~~~~~~~l~-------~eL~~L~~ 338 (553)
T PRK10869 271 EEALIQIQEASDELRHYLDR-L--DLDPNRLAELEQRLSKQISLARKHH--VSPEELPQHHQQLL-------EEQQQLDD 338 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhh-c--CCCHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH-------HHHHHhhC
Confidence 34444455555555544431 1 2345555555555555544443322 23334333333333 23333334
Q ss_pred ChhHHHHHHHHHHHHHH
Q psy7140 1184 RPNILEEYKHSVQSAKN 1200 (1304)
Q Consensus 1184 rp~~~~~l~~~l~~~~~ 1200 (1304)
....++.|.+.+...+.
T Consensus 339 ~e~~l~~Le~e~~~l~~ 355 (553)
T PRK10869 339 QEDDLETLALAVEKHHQ 355 (553)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44445555555554444
No 319
>KOG0517|consensus
Probab=27.64 E-value=6e+02 Score=35.88 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHhhc--C-CCCCHHHHHHHHHHHHhccchHHHHHHhhcc-----------ChhHHHHHHHHHHH-
Q psy7140 1133 NRNVLNKKLDETENWLYEE--G-QDVNRSVYNDRLNSLRTVGDPVKMRAMEYAM-----------RPNILEEYKHSVQS- 1197 (1304)
Q Consensus 1133 er~~i~~~l~e~~~WL~~~--g-~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~-----------rp~~~~~l~~~l~~- 1197 (1304)
|-..+..=+.+-+.||.+= + .-.+.+.++.|++.|..-++....|+.+-.. .-.-|..-+..||.
T Consensus 852 e~d~~ElWi~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q~~Ln~r 931 (2473)
T KOG0517|consen 852 ECDACELWIKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGHPNSDEILARQDKLNQR 931 (2473)
T ss_pred hccHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 3455666677778888641 1 2234667777777777665555444433211 11122222233322
Q ss_pred ---HHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCHHHHHHHHHHHHHHHHHhhc
Q psy7140 1198 ---AKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWIEEKVSKLKSLPKHENPPITCDQIREEKYKFEKSVWSVLN 1273 (1304)
Q Consensus 1198 ---~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 1273 (1304)
.+..++.-. ..--....+..+.-.|.++..|+.++...+..++.-.+-.-.+-.+..++..+++.+..|-.
T Consensus 932 W~~l~~l~~qk~-----~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~ 1005 (2473)
T KOG0517|consen 932 WQQLRELVDQKK-----VALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEA 1005 (2473)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHH
Confidence 222221110 01124556778888999999999999777776666555555666666666666666655543
No 320
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=27.50 E-value=78 Score=34.98 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCCcccEEEEEcCCCCchhHHHHHHHhcC----CCCCCCCCchhHHHHHHH
Q psy7140 361 PVNAIHSIEIVGGSSRIPAFKNVIESVFH----KPPSTTLNQDEAVSRGCA 407 (1304)
Q Consensus 361 ~~~~i~~ViLvGG~sr~p~v~~~l~~~f~----~~~~~~~np~eaVa~Gaa 407 (1304)
-+..+|.|+|+||.++...+-++|.+... ..+...-+-.+|.|.|+.
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~l 343 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGAL 343 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhH
Confidence 34578999999999999999999998874 223445677789999875
No 321
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=27.24 E-value=1.5e+02 Score=24.77 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=25.7
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHcCCce
Q psy7140 699 CVLAVPSYFTNNERKALLTAASIAGLNV 726 (1304)
Q Consensus 699 ~VitVP~~f~~~qr~~l~~Aa~~AGl~~ 726 (1304)
..+..|+.++..||..+.+.|+..||..
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 6788999999999999999999999875
No 322
>PLN02362 hexokinase
Probab=27.15 E-value=5.1e+02 Score=32.06 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHcCC--CeEEeechhHHHHHHhhhh
Q psy7140 179 TNNERKALLTAASIAGL--NVLRLINETTATALAYGIY 214 (1304)
Q Consensus 179 ~~~qr~~l~~A~~~AGl--~~~~li~Ep~AAal~y~~~ 214 (1304)
...-.+.+.+|...-|+ ++..|+|+.+|..++.++.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~ 241 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYH 241 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcC
Confidence 44558888999888886 5788999999988876543
No 323
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.06 E-value=7.6e+02 Score=34.46 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=31.6
Q ss_pred HHhHHHHHHHHHHHHHHHhh----cCCCC-CHHHHHHHHHHHHhccchHHH
Q psy7140 1131 DSNRNVLNKKLDETENWLYE----EGQDV-NRSVYNDRLNSLRTVGDPVKM 1176 (1304)
Q Consensus 1131 ~~er~~i~~~l~e~~~WL~~----~g~~a-~~~~~~~kl~~L~~~~~~i~~ 1176 (1304)
.+.+..+.+.+.+++.|+.. .|-|. ....++.++++|++..+-|..
T Consensus 742 ~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~ 792 (1201)
T PF12128_consen 742 AAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEE 792 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888889999875 34443 456777777777777766653
No 324
>PLN02377 3-ketoacyl-CoA synthase
Probab=26.93 E-value=1.5e+02 Score=36.44 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccEEEE-EcCCCCchhHHHHHHHhcCCC
Q psy7140 341 EHIFGRIEICLNKCIAESKLPVNAIHSIEI-VGGSSRIPAFKNVIESVFHKP 391 (1304)
Q Consensus 341 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~sr~p~v~~~l~~~f~~~ 391 (1304)
++...=+...++++|+++|+++++||.|+. +.+....|.+-.+|.+.+|..
T Consensus 170 ~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 170 EEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 333333567788999999999999999877 344446899999999999854
No 325
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=26.80 E-value=1.9e+02 Score=24.15 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=25.7
Q ss_pred EEEeecCCCCHHHHHHHHHHHHHcCCCe
Q psy7140 170 CVLAVPSYFTNNERKALLTAASIAGLNV 197 (1304)
Q Consensus 170 ~vitVPa~~~~~qr~~l~~A~~~AGl~~ 197 (1304)
..+..|+.++..||..+.+.|+..||..
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 5679999999999999999999999865
No 326
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=26.75 E-value=5.8e+02 Score=25.76 Aligned_cols=87 Identities=11% Similarity=0.179 Sum_probs=46.6
Q ss_pred hhccCh--hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHH-HHHhhccCCCCCCCccCHHH
Q psy7140 1180 EYAMRP--NILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWIEE-KVSKLKSLPKHENPPITCDQ 1256 (1304)
Q Consensus 1180 e~~~rp--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~-~~~~q~~~~~~~dP~~~~~d 1256 (1304)
+...+| +-++.|...|..++.++..+..-. +|..+-.-....=...+++.-.|+-+ .+..+.. --..+
T Consensus 58 ~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~~--------~D~~~ 128 (147)
T PF05659_consen 58 VELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKIEELEESLRRFIQVDLQLHQL--------RDIKE 128 (147)
T ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHHHHHHHHHHHHhcchhHHHHH--------HHHHH
Confidence 344566 778999999999999998775432 22222222222222233333334433 1111111 12355
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q psy7140 1257 IREEKYKFEKSVWSVLNKP 1275 (1304)
Q Consensus 1257 i~~k~~~l~~~~~~l~~kp 1275 (1304)
+..+...+...++.+.+.|
T Consensus 129 l~~~~~e~~~kl~~i~~~~ 147 (147)
T PF05659_consen 129 LLAKMSEMNTKLDDITRQP 147 (147)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 6666777777777776654
No 327
>PLN02362 hexokinase
Probab=26.46 E-value=97 Score=38.13 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=16.3
Q ss_pred eEEEEEccCccEEEEEEE
Q psy7140 561 SVIGIDFGTESCYLSVAK 578 (1304)
Q Consensus 561 ~vvGID~Gtt~s~va~~~ 578 (1304)
..++||||.||.+|+.+.
T Consensus 96 ~fLAlDlGGTNfRV~~V~ 113 (509)
T PLN02362 96 TYYALDLGGTNFRVLRVQ 113 (509)
T ss_pred eEEEEecCCceEEEEEEE
Confidence 479999999999999886
No 328
>KOG1029|consensus
Probab=26.33 E-value=1e+03 Score=30.41 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHH
Q psy7140 1133 NRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAM 1179 (1304)
Q Consensus 1133 er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~ 1179 (1304)
|+..+...|.|..+-|-- -...+.+++++++..+..-.+--.|..
T Consensus 487 ei~qlqarikE~q~kl~~--l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQK--LAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred HHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 444444444444444421 122355666666665555444444333
No 329
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.31 E-value=1.2e+02 Score=29.39 Aligned_cols=23 Identities=26% Similarity=0.699 Sum_probs=19.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHH
Q psy7140 1143 ETENWLYEEGQDVNRSVYNDRLN 1165 (1304)
Q Consensus 1143 e~~~WL~~~g~~a~~~~~~~kl~ 1165 (1304)
..++||+++++..|.+.|+++..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 45889999988899999987653
No 330
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=25.95 E-value=1.3e+02 Score=31.61 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhccchHH
Q psy7140 1111 EEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQD-VNRSVYNDRLNSLRTVGDPVK 1175 (1304)
Q Consensus 1111 Es~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~-a~~~~~~~kl~~L~~~~~~i~ 1175 (1304)
++|+.++|..|. .++++||+++ ++.++++++|.+++ .+.++..++|..=+.+.+.+.
T Consensus 4 ~efL~~L~~~L~-----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 4 NEFLNELEKYLK-----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHHH-----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHH
Confidence 456777777664 3567777666 46777778765443 355666555544444444443
No 331
>KOG2150|consensus
Probab=25.93 E-value=2.3e+02 Score=34.68 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=19.5
Q ss_pred HHHhcchhccccCHHhHHHHHHHHHHHHHHHhhc
Q psy7140 1118 RDGLANDKADFITDSNRNVLNKKLDETENWLYEE 1151 (1304)
Q Consensus 1118 r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~ 1151 (1304)
|++|+.+++. |.++|...-+++..|+..+
T Consensus 40 keK~e~DLKk-----EIKKLQRlRdQIKtW~ss~ 68 (575)
T KOG2150|consen 40 KEKLESDLKK-----EIKKLQRLRDQIKTWQSSS 68 (575)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHhhhccc
Confidence 5566555543 5567777778888999654
No 332
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=25.28 E-value=7.2e+02 Score=25.15 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=71.8
Q ss_pred EEEEEeCCceeEEEEEEEECCeEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHh
Q psy7140 757 VAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQM 836 (1304)
Q Consensus 757 vlv~D~Gggt~dvsvv~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~rL~~~ae~~K~~L 836 (1304)
||=+|-|-.+|-.++++..++.++++..+.-..-.+...- .|+..-.+.+...+
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~~~~~~~--------------------------~rl~~I~~~l~~~i 55 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAPLP--------------------------SRLKTIYDGLNEVI 55 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEEeeEEECCCCCCHH--------------------------HHHHHHHHHHHHHH
Confidence 6789999999999999988888877765532221111111 12222223333333
Q ss_pred cc-CCceeeeEEeeecCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCceeEEEEecCCCCChhHH
Q psy7140 837 SA-NSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP-----VNAIHSIEIVGGSSRIPAFK 910 (1304)
Q Consensus 837 s~-~~~~~~~~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~~~~~-----~~~I~~V~LvGG~srip~v~ 910 (1304)
.. +.+ .+-+|..+-... .+..+ .+..+...+..++...+++ +..+...+.-=|.+.=--|+
T Consensus 56 ~~~~Pd--~vaiE~~~~~~n---------~~s~~--~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~KeqV~ 122 (154)
T cd00529 56 DQFQPD--VVAIERVFFAKN---------PDSAL--KLGQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADKDQVQ 122 (154)
T ss_pred HHhCCC--EEEEEEhhcccC---------hHHHH--HHHHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCHHHHH
Confidence 22 122 344554322221 11111 2334455555666665554 44455444322333334688
Q ss_pred HHHHHHcCCCCC-CCCCchhHHHhHH
Q psy7140 911 NVIESVFHKPPS-TTLNQDEAVSRGC 935 (1304)
Q Consensus 911 ~~l~~~fg~~~~-~~~n~~eava~Ga 935 (1304)
.++++.++.+.. .+.|...|.|.+.
T Consensus 123 ~mv~~~l~~~~~~~~~d~aDAlaiA~ 148 (154)
T cd00529 123 HMVKRLLNLSEIPKPDDAADALAVAI 148 (154)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 899999986543 3344444555443
No 333
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=25.18 E-value=1.3e+02 Score=25.24 Aligned_cols=30 Identities=37% Similarity=0.380 Sum_probs=26.5
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHcCCCeE
Q psy7140 169 DCVLAVPSYFTNNERKALLTAASIAGLNVL 198 (1304)
Q Consensus 169 ~~vitVPa~~~~~qr~~l~~A~~~AGl~~~ 198 (1304)
.-.++.|+.+++.+|+.+...|...|+...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 556778999999999999999999999763
No 334
>PLN02405 hexokinase
Probab=25.00 E-value=5.4e+02 Score=31.71 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCC--CeEEeechhHHHHHHhhhh
Q psy7140 179 TNNERKALLTAASIAGL--NVLRLINETTATALAYGIY 214 (1304)
Q Consensus 179 ~~~qr~~l~~A~~~AGl--~~~~li~Ep~AAal~y~~~ 214 (1304)
...-.+.+.+|...-|+ ++..|+|+.++..++.++.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~ 241 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYY 241 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcC
Confidence 44457888999888887 5678999999988877653
No 335
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=24.83 E-value=85 Score=30.26 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCCCceeEEEEecCCCCChhH--HHHHHHHcCC
Q psy7140 874 GRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAF--KNVIESVFHK 919 (1304)
Q Consensus 874 ~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~srip~v--~~~l~~~fg~ 919 (1304)
..+...|+++|+++++++++|+.|+.-|-++..--. .+.|.+.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 455677999999999999999999999988775333 3457888864
No 336
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=24.71 E-value=80 Score=31.59 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=18.1
Q ss_pred CcEEEEEcCcccEEEEEEeC
Q psy7140 1 MSVIGIDFGTESCYLSVAKS 20 (1304)
Q Consensus 1 m~viGID~GTt~s~va~~~~ 20 (1304)
|.|++||.|+-|.+.++...
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 88999999999999998764
No 337
>PLN02405 hexokinase
Probab=24.67 E-value=4.7e+02 Score=32.22 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=29.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCC--ceeeeechhHHHHHHhcc
Q psy7140 704 PSYFTNNERKALLTAASIAGL--NVLRLINETTATALAYGI 742 (1304)
Q Consensus 704 P~~f~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~ 742 (1304)
|..-...-.+.|.+|.+.-|+ ++..|+|+.+++.++.++
T Consensus 200 ~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY 240 (497)
T PLN02405 200 DDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRY 240 (497)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhc
Confidence 333355567888899888888 577899999998887654
No 338
>PLN03170 chalcone synthase; Provisional
Probab=24.64 E-value=1.8e+02 Score=34.83 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcccEEEEEcCCC-CchhHHHHHHHhcCCCC
Q psy7140 345 GRIEICLNKCIAESKLPVNAIHSIEIVGGSS-RIPAFKNVIESVFHKPP 392 (1304)
Q Consensus 345 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-r~p~v~~~l~~~f~~~~ 392 (1304)
+=..+..+++|+++++++++||.|+.+-.+. .+|.+.-.|.+.+|...
T Consensus 108 ~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 156 (401)
T PLN03170 108 KLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRP 156 (401)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCc
Confidence 3356788999999999999999998877554 69999999999998543
No 339
>PLN03173 chalcone synthase; Provisional
Probab=24.48 E-value=1.9e+02 Score=34.56 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCCCCcccEEEEEcCCC-CchhHHHHHHHhcCCCC
Q psy7140 347 IEICLNKCIAESKLPVNAIHSIEIVGGSS-RIPAFKNVIESVFHKPP 392 (1304)
Q Consensus 347 i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-r~p~v~~~l~~~f~~~~ 392 (1304)
..+.++++|+++++++++||.|+.+..+. ..|.+--.|.+.+|...
T Consensus 106 a~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 106 GKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 56778899999999999999998887555 58999999999998543
No 340
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=24.11 E-value=1.6e+02 Score=24.45 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=29.7
Q ss_pred HHHHHHhhhcCccceEEEeecCCCCHHHHHHHHHHHHHcCCCe
Q psy7140 155 LKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNV 197 (1304)
Q Consensus 155 lk~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A~~~AGl~~ 197 (1304)
+++..+.++... .-.++.|. ++..+|..+.+.|...||..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 444445554433 34668999 89999999999999999865
No 341
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=24.04 E-value=83 Score=30.33 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcccEEEEEcCCCCchhH--HHHHHHhcCC
Q psy7140 345 GRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAF--KNVIESVFHK 390 (1304)
Q Consensus 345 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~sr~p~v--~~~l~~~f~~ 390 (1304)
......++++|+++++++++|+.|..-|-++..--. .+.|.+.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 345677999999999999999999999988775333 3468888873
No 342
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=23.55 E-value=1.2e+03 Score=27.54 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=48.8
Q ss_pred cCHHhHHHHHHHHHHHHHHHhhc--CCCCC--HHHHHHHHHHHHhccchHHHHHHhhccChhHHHHHHHHHHHHHHHHHH
Q psy7140 1129 ITDSNRNVLNKKLDETENWLYEE--GQDVN--RSVYNDRLNSLRTVGDPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDA 1204 (1304)
Q Consensus 1129 ~~~~er~~i~~~l~e~~~WL~~~--g~~a~--~~~~~~kl~~L~~~~~~i~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~ 1204 (1304)
.+.++|..+.+.|..+-+.|+.+ |++.. ..+|..|..+ -+-+-|..+++|-..|..-......
T Consensus 175 a~d~d~~~~~eml~dlndll~kh~~g~dt~~df~~fm~khge-------------~fpe~pr~~~el~d~laAR~aaaSr 241 (652)
T COG4867 175 ATDDDRRRVTEMLDDLNDLLDKHARGEDTQRDFDEFMTKHGE-------------FFPENPRNVEELLDSLAARAAAASR 241 (652)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHhccc-------------cCCCCcccHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999864 55532 3344433222 1234566666655544321111112
Q ss_pred HhcCCCCCCCCChhhHHHHHHHHHHH
Q psy7140 1205 AFKGDDRFSHLSKQDLSTVETAIKQH 1230 (1304)
Q Consensus 1205 ~~~~~~~~~~~t~~e~~~l~~~~~~~ 1230 (1304)
+. ..+++++..+|.+++++.
T Consensus 242 f~------nslsqeqr~ELM~l~qqA 261 (652)
T COG4867 242 FR------NSLSQEQRDELMALAQQA 261 (652)
T ss_pred Hh------hhhhHHHHHHHHHHHHHH
Confidence 21 247888888888776654
No 343
>PLN03172 chalcone synthase family protein; Provisional
Probab=23.40 E-value=1.8e+02 Score=34.79 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcccEEEEEcCCC-CchhHHHHHHHhcCCCC
Q psy7140 345 GRIEICLNKCIAESKLPVNAIHSIEIVGGSS-RIPAFKNVIESVFHKPP 392 (1304)
Q Consensus 345 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-r~p~v~~~l~~~f~~~~ 392 (1304)
+=..+.++++|+++++++++||.|+++..+. .+|.+--.|.+.+|...
T Consensus 104 ~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~ 152 (393)
T PLN03172 104 KLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKP 152 (393)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCC
Confidence 3356778899999999999999998877665 69999999999998543
No 344
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.40 E-value=7e+02 Score=32.12 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHH
Q psy7140 1101 KDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWL 1148 (1304)
Q Consensus 1101 ~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL 1148 (1304)
.+..+....+|.-+.++..+|.. .-.+++.+.+.+.+++++.=+
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~----~~~~e~i~~l~e~l~~l~~~l 437 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKIST----IPSEEQIAQLLEELGEAQNEL 437 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHH
Confidence 33445555666666666766641 122345555555555554444
No 345
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.30 E-value=5.8e+02 Score=35.46 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=40.0
Q ss_pred cCChHHHHHHHHHHhhhccCchhH-------HHHHHHHHHHHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHh
Q psy7140 1077 YLANIKVHDLFELECKMQDNDRQE-------KDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLY 1149 (1304)
Q Consensus 1077 ~ls~~ei~~~~~~~~~~~~~D~~~-------~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~ 1149 (1304)
.+++.+...+++++.-...-++++ ++..+-.+.++..+++++..|+.--.+.-....-..+.+.+..++.|+.
T Consensus 151 ~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~ 230 (1163)
T COG1196 151 NAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230 (1163)
T ss_pred cCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777766654322222222 2223444556666666666665211222345556677777777777775
Q ss_pred h
Q psy7140 1150 E 1150 (1304)
Q Consensus 1150 ~ 1150 (1304)
-
T Consensus 231 ~ 231 (1163)
T COG1196 231 L 231 (1163)
T ss_pred H
Confidence 3
No 346
>PLN03170 chalcone synthase; Provisional
Probab=23.28 E-value=2.2e+02 Score=34.21 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCC-CChhHHHHHHHHcCCCCC
Q psy7140 871 HIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSS-RIPAFKNVIESVFHKPPS 922 (1304)
Q Consensus 871 ~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~s-rip~v~~~l~~~fg~~~~ 922 (1304)
...+=..+..+++|+++|+++++|+.|+++-.+. .+|.+.-.|.+.+|....
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~~ 157 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRPS 157 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCcc
Confidence 3444556788999999999999999988776544 699999999999986543
No 347
>PLN03173 chalcone synthase; Provisional
Probab=23.25 E-value=2.2e+02 Score=33.93 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCceeEEEEecCCC-CChhHHHHHHHHcCCCC
Q psy7140 872 IFGRIEICLNKCIAESKLPVNAIHSIEIVGGSS-RIPAFKNVIESVFHKPP 921 (1304)
Q Consensus 872 ~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~s-rip~v~~~l~~~fg~~~ 921 (1304)
-.+=..+.++++|+++|+++++|+.|+.+..+. ..|.+--.|.+.+|...
T Consensus 102 a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 344456778899999999999999998876554 68999999999998654
No 348
>KOG2004|consensus
Probab=23.14 E-value=3.6e+02 Score=34.33 Aligned_cols=133 Identities=21% Similarity=0.219 Sum_probs=76.3
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhcchhccccCHHhHHHH-HHHHHHHHHHHhhc--CCCCCHHHH
Q psy7140 1084 HDLFELECKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVL-NKKLDETENWLYEE--GQDVNRSVY 1160 (1304)
Q Consensus 1084 ~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i-~~~l~e~~~WL~~~--g~~a~~~~~ 1160 (1304)
.+..+.+++..-.++.+....-.+.++|.- .++.++..+.++.++...|+-+ .++|..+..=|-.+ ..++--+.|
T Consensus 266 ~elq~vL~~~di~~Rl~~al~llkke~e~~--klq~ki~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~~ 343 (906)
T KOG2004|consen 266 HELQEVLEETDIEKRLEKALELLKKELELA--KLQQKIGKEVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEKF 343 (906)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHhhCCCccchhhHHHHH
Confidence 333344444444445444444455555543 4445554444455555555443 44577777777533 344556788
Q ss_pred HHHHHHHHhccchHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHH
Q psy7140 1161 NDRLNSLRTVGDPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLS 1221 (1304)
Q Consensus 1161 ~~kl~~L~~~~~~i~~R~~e~~~rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~ 1221 (1304)
.+|++. .+.-+.+...+.+-..|-+.++.-..-.+-+++.++-+ ..-| |...+.|+++
T Consensus 344 ~er~~~-~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwl-t~LP-Wgk~S~En~d 401 (906)
T KOG2004|consen 344 RERIKS-LKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWL-TSLP-WGKSSTENLD 401 (906)
T ss_pred HHHhhh-ccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHH-HhCC-CCCCChhhhh
Confidence 888888 55667777777776666666666666777788877543 3333 3345666543
No 349
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=22.94 E-value=1.4e+02 Score=24.99 Aligned_cols=29 Identities=38% Similarity=0.372 Sum_probs=26.2
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHcCCce
Q psy7140 698 DCVLAVPSYFTNNERKALLTAASIAGLNV 726 (1304)
Q Consensus 698 ~~VitVP~~f~~~qr~~l~~Aa~~AGl~~ 726 (1304)
.-.++.|+.++..||+.+...|...||..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 55677899999999999999999999976
No 350
>PRK10869 recombination and repair protein; Provisional
Probab=22.75 E-value=1.6e+03 Score=28.22 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q psy7140 1185 PNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWIE 1235 (1304)
Q Consensus 1185 p~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~ 1235 (1304)
|+.++.+...|.....+-.. | ..|.+++-...+.+.+-.+|++
T Consensus 295 p~~l~~ie~Rl~~l~~L~rK-------y-g~~~~~~~~~~~~l~~eL~~L~ 337 (553)
T PRK10869 295 PNRLAELEQRLSKQISLARK-------H-HVSPEELPQHHQQLLEEQQQLD 337 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------h-CCCHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555443322 2 2355555555555555555544
No 351
>PF07952 Toxin_trans: Clostridium neurotoxin, Translocation domain; InterPro: IPR012500 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (IPR000395 from INTERPRO), the central translocation domains and two receptor binding domains []. Subsequent to cell surface binding and receptor mediated endocytosis of the neurotoxin, an acid induced conformational change in the neurotoxin translocation domain is believed to allow the domain to penetrate the endosome and from a pore, thereby facilitating the passage of the catalytic domain across the membrane into the cytosol []. The structure of the translocation reveals a pair of helices that are 105 Angstroms long and is structurally distinct from other pore forming toxins []. ; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1DFQ_A 1A8D_A 1FV3_A 1YXW_A 1DLL_A 1DIW_A 1YYN_A 1FV2_A 1D0H_A 3HMY_A ....
Probab=22.71 E-value=6.2e+02 Score=28.55 Aligned_cols=47 Identities=6% Similarity=0.177 Sum_probs=33.3
Q ss_pred hccChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHH
Q psy7140 1181 YAMRPNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQH 1230 (1304)
Q Consensus 1181 ~~~rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~ 1230 (1304)
...-|.+++.|.+..+..++.+-.+-... ..++..|+++|.++++.+
T Consensus 253 ~~m~p~~i~~L~~~d~~vk~~ll~yI~~~---~~il~~e~~~L~~~vn~~ 299 (321)
T PF07952_consen 253 KNMIPKAISKLEEFDNNVKKNLLNYIDKN---TNILGDEVDKLKSKVNNT 299 (321)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTSGTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHc---ccchhhHHHHHHHHHHHh
Confidence 34568899999988888877554444322 246778888888887765
No 352
>PRK03918 chromosome segregation protein; Provisional
Probab=22.43 E-value=1.6e+03 Score=29.99 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHH
Q psy7140 1080 NIKVHDLFELECKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSV 1159 (1304)
Q Consensus 1080 ~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~ 1159 (1304)
.+++....+.+..+.....+..........++..+-.....+... ..+.+.+...+.++......- .....
T Consensus 220 ~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l------~~el~~l~~~l~~l~~~~~~~---~~l~~ 290 (880)
T PRK03918 220 REELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIREL------EERIEELKKEIEELEEKVKEL---KELKE 290 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH---HHHHH
Q ss_pred HHHHHHHHHhccchHHHHHHhhccC-----------hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHH
Q psy7140 1160 YNDRLNSLRTVGDPVKMRAMEYAMR-----------PNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIK 1228 (1304)
Q Consensus 1160 ~~~kl~~L~~~~~~i~~R~~e~~~r-----------p~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~ 1228 (1304)
..+.+..+.....++...+.+...+ -..++.+...+.........+..... ...++......+.
T Consensus 291 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~~~~~~~~~-----~~~~l~~~~~~l~ 365 (880)
T PRK03918 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEK-----RLEELEERHELYE 365 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhccCCCCCCCccCHHHHHHHHHHHHHHHHHhhcC
Q psy7140 1229 QHVKWIEEKVSKLKSLPKHENPPITCDQIREEKYKFEKSVWSVLNK 1274 (1304)
Q Consensus 1229 ~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k 1274 (1304)
....++.+.......+. .+...++..+...++.....+..+
T Consensus 366 ~~~~~~~~l~~l~~~l~-----~~~~~~l~~~l~~l~~~~~~l~~~ 406 (880)
T PRK03918 366 EAKAKKEELERLKKRLT-----GLTPEKLEKELEELEKAKEEIEEE 406 (880)
T ss_pred HHHHHHHHHHHHHHHhc-----ccCHHHHHHHHHHHHHhHHHHHHH
No 353
>KOG0996|consensus
Probab=22.18 E-value=1.3e+03 Score=31.13 Aligned_cols=28 Identities=11% Similarity=0.044 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhccchHHHHHHhhccC
Q psy7140 1157 RSVYNDRLNSLRTVGDPVKMRAMEYAMR 1184 (1304)
Q Consensus 1157 ~~~~~~kl~~L~~~~~~i~~R~~e~~~r 1184 (1304)
.+.+.+++..+++...|...+..+...+
T Consensus 474 t~~~~~e~~~~ekel~~~~~~~n~~~~e 501 (1293)
T KOG0996|consen 474 TEGIREEIEKLEKELMPLLKQVNEARSE 501 (1293)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666776666666544
No 354
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=22.16 E-value=1.8e+02 Score=24.07 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=30.1
Q ss_pred HHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHHHcCCce
Q psy7140 683 KLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNV 726 (1304)
Q Consensus 683 ~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~AGl~~ 726 (1304)
.+++..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444445554433 45678999 89999999999999988864
No 355
>PLN03172 chalcone synthase family protein; Provisional
Probab=22.13 E-value=2.1e+02 Score=34.26 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCCC-CChhHHHHHHHHcCCCC
Q psy7140 870 EHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSS-RIPAFKNVIESVFHKPP 921 (1304)
Q Consensus 870 ~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~s-rip~v~~~l~~~fg~~~ 921 (1304)
+...+=..+.++++|+++++++++|+.|+++..+. .+|.+--.|.+.+|...
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~ 152 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKP 152 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCC
Confidence 33445556778899999999999999998776554 69999999999998654
No 356
>KOG0678|consensus
Probab=21.99 E-value=1e+03 Score=27.27 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=56.1
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHcCCceeeeec---hhHHHHHHhccccCCCCCCCCCCcEEEEEEeCCceeEEEEEEE
Q psy7140 698 DCVLAVPSYFTNNERKALLTAASIAGLNVLRLIN---ETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAF 774 (1304)
Q Consensus 698 ~~VitVP~~f~~~qr~~l~~Aa~~AGl~~~~li~---Ep~Aaal~y~~~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~~ 774 (1304)
...+|-|.-=....|+-+.+..- --+++..|.- .-.|.|+.| ..+.. .+..-.=+|+|-|-|-|-+-.+.
T Consensus 108 ~fLlteppln~penreytaeImf-EsfnvpglyiAVqavLALaasw--ts~~v---~er~ltG~VidsGdgvThvipva- 180 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMF-ESFNVPGLYIAVQAVLALAASW--TSRQV---GERFLTGIVIDSGDGVTHVIPVA- 180 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhh-hhccCchHHHHHHHHHHHHHHH--HHhhh---hhheeeeEEEecCCCeeEEEEee-
Confidence 46778887777777776655422 1345554432 222333333 22211 12233457899999977665543
Q ss_pred ECCeEEEEEEecCCCCCcHHHHHHHHHHH
Q psy7140 775 VKGKLKVLSNVCDSEIGGRNIDKILAEYI 803 (1304)
Q Consensus 775 ~~~~~~v~~~~~~~~lGG~~~D~~l~~~l 803 (1304)
..+-+.++-....+.|++++.-+...+
T Consensus 181 --EgyVigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 181 --EGYVIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred --cceEEeeeeccccccCCchhHHHHHHh
Confidence 233444546677999999998776665
No 357
>PLN02914 hexokinase
Probab=21.98 E-value=6.8e+02 Score=30.82 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=29.8
Q ss_pred ecCCCCHHHHHHHHHHHHHcCC--CeEEeechhHHHHHHhhhh
Q psy7140 174 VPSYFTNNERKALLTAASIAGL--NVLRLINETTATALAYGIY 214 (1304)
Q Consensus 174 VPa~~~~~qr~~l~~A~~~AGl--~~~~li~Ep~AAal~y~~~ 214 (1304)
++..-...-.+.|.+|.+.-|+ ++..|+|+.+|..++.++.
T Consensus 199 ~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~ 241 (490)
T PLN02914 199 VSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYW 241 (490)
T ss_pred cCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcC
Confidence 3333344457888899887776 6788999999988877653
No 358
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=21.76 E-value=7.5e+02 Score=34.30 Aligned_cols=14 Identities=0% Similarity=0.190 Sum_probs=6.8
Q ss_pred CChHHHHHHHHHHh
Q psy7140 1078 LANIKVHDLFELEC 1091 (1304)
Q Consensus 1078 ls~~ei~~~~~~~~ 1091 (1304)
+++.+...+.+.+.
T Consensus 150 ~~~~~r~~~~~~~~ 163 (1164)
T TIGR02169 150 MSPVERRKIIDEIA 163 (1164)
T ss_pred CCHHHHHHHHHHHh
Confidence 45555555554443
No 359
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=21.56 E-value=8.5e+02 Score=25.25 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCccCHHHHHHHHHHHHHHHHHhh
Q psy7140 1230 HVKWIEEKVSKLKSLPKHENPPITCDQIREEKYKFEKSVWSVL 1272 (1304)
Q Consensus 1230 ~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 1272 (1304)
...|+.+........+... ...++...+..++.....+.
T Consensus 118 l~~wl~~~e~~l~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 156 (213)
T cd00176 118 LEQWLEEKEAALASEDLGK----DLESVEELLKKHKELEEELE 156 (213)
T ss_pred HHHHHHHHHHHhcCcccCC----CHHHHHHHHHHHHHHHHHHH
Confidence 8889998887666544332 66677666666666555554
No 360
>PLN03168 chalcone synthase; Provisional
Probab=21.55 E-value=2e+02 Score=34.39 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccEEEEEcCC-CCchhHHHHHHHhcCCCC
Q psy7140 344 FGRIEICLNKCIAESKLPVNAIHSIEIVGGS-SRIPAFKNVIESVFHKPP 392 (1304)
Q Consensus 344 ~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-sr~p~v~~~l~~~f~~~~ 392 (1304)
.+=..+..+++|+++++++++||.|+.+-.+ -.+|.+--.|.+.+|-..
T Consensus 102 ~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 151 (389)
T PLN03168 102 PKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKP 151 (389)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCC
Confidence 3335678899999999999999999877443 358999999999998543
No 361
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.47 E-value=9.5e+02 Score=27.65 Aligned_cols=18 Identities=6% Similarity=0.183 Sum_probs=11.3
Q ss_pred CCChhhHHHHHHHHHHHH
Q psy7140 1214 HLSKQDLSTVETAIKQHV 1231 (1304)
Q Consensus 1214 ~~t~~e~~~l~~~~~~~~ 1231 (1304)
++|..|+..|...++..+
T Consensus 267 ~~t~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 267 GFTFKEIEKLKEQLKLLQ 284 (312)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 567777776666655543
No 362
>KOG1385|consensus
Probab=21.31 E-value=68 Score=37.48 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=43.8
Q ss_pred ceeeCHHHHHHHHHHHHHHHHHhhhccccceEEEeecCCCCHHHHHHHHHHHHHcCCceeeeec---hhHH--HHHHhcc
Q psy7140 668 EHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLIN---ETTA--TALAYGI 742 (1304)
Q Consensus 668 ~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qr~~l~~Aa~~AGl~~~~li~---Ep~A--aal~y~~ 742 (1304)
+....|.+-...+|+.+++..++..--++.. +.+.+++ |..- ..++|.+
T Consensus 151 GLRlL~~~ka~~IL~aVre~l~~~s~f~v~~--------------------------d~VsIm~GtdEGv~aWiTiN~Ll 204 (453)
T KOG1385|consen 151 GLRLLPGSKADNILQAVRELLKNDSPFPVVE--------------------------DAVSIMDGTDEGVYAWITINYLL 204 (453)
T ss_pred ccccCChhHHHHHHHHHHHHHhccCCccccC--------------------------CceeeccCcccceeeeeehhhhh
Confidence 4556788888999999988877432222211 1122222 2111 1234543
Q ss_pred ccCCCCCCCCCCcEEEEEEeCCceeEEEEEE
Q psy7140 743 YKQDLPEDDQNPRYVAFVDFGYSALQVCIAA 773 (1304)
Q Consensus 743 ~~~~~~~~~~~~~~vlv~D~Gggt~dvsvv~ 773 (1304)
..-. ......+.++|+|||+|+++..-
T Consensus 205 g~L~----~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 205 GTLG----APGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred cccC----CCCCCceEEEEcCCceEEEEEec
Confidence 2211 12257899999999999999754
No 363
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=21.27 E-value=1.2e+03 Score=26.08 Aligned_cols=87 Identities=10% Similarity=0.224 Sum_probs=44.9
Q ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHhhc-cChhHHH---HHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHH
Q psy7140 1151 EGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYA-MRPNILE---EYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETA 1226 (1304)
Q Consensus 1151 ~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~-~rp~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~ 1226 (1304)
++...+...+..++++.+.....|..|- +. .+..|-. .+...|+.+++.+.........-..--.+.+......
T Consensus 116 ~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~k 193 (264)
T PF06008_consen 116 NGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAK 193 (264)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888887773 22 2333322 2333334444432111100000000022344555666
Q ss_pred HHHHHHHHHHHHH
Q psy7140 1227 IKQHVKWIEEKVS 1239 (1304)
Q Consensus 1227 ~~~~~~Wl~~~~~ 1239 (1304)
+...++|+++..+
T Consensus 194 L~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 194 LQDLRDLLNEAQN 206 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 7777778877555
No 364
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.44 E-value=1.8e+03 Score=27.86 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhccccCHHhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhccchHHHHHHhhc
Q psy7140 1103 RVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYA 1182 (1304)
Q Consensus 1103 ~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~~g~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~ 1182 (1304)
..++...||...+++++.+++ + -..|+..+.+.+.+.....-..-.| .+.+++.+.+++++ .++....
T Consensus 275 l~~~~~~l~d~~~~l~~~~~~-l--~~dp~~L~ele~RL~~l~~LkrKyg--~s~e~l~~~~~~l~-------~eL~~l~ 342 (563)
T TIGR00634 275 VGNALTEVEEATRELQNYLDE-L--EFDPERLNEIEERLAQIKRLKRKYG--ASVEEVLEYAEKIK-------EELDQLD 342 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH-------HHHHHHh
Confidence 345666666666666666542 1 3467777777777776666544333 24445544444444 3344444
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q psy7140 1183 MRPNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWIEE 1236 (1304)
Q Consensus 1183 ~rp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~t~~e~~~l~~~~~~~~~Wl~~ 1236 (1304)
.....++.++..+..++.-+.... ..++....+...........||..
T Consensus 343 ~~~~~le~L~~el~~l~~~l~~~a------~~Ls~~R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 343 DSDESLEALEEEVDKLEEELDKAA------VALSLIRRKAAERLAKRVEQELKA 390 (563)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666665443332 124444444555555666666654
No 365
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=20.31 E-value=3.3e+02 Score=35.91 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=28.5
Q ss_pred HHHHHhcchhccccCHHhHHHHH-HHHHHHHHHHhhcC-CCCCHHHHHHHHHHHH
Q psy7140 1116 ELRDGLANDKADFITDSNRNVLN-KKLDETENWLYEEG-QDVNRSVYNDRLNSLR 1168 (1304)
Q Consensus 1116 ~~r~~L~~~~~~~~~~~er~~i~-~~l~e~~~WL~~~g-~~a~~~~~~~kl~~L~ 1168 (1304)
+++.++....++.++..+|+-+. +++..+.+=|.++. .+.+.++|++|+++++
T Consensus 206 ~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~~~~~~~~~~~~~k~~~~~ 260 (775)
T TIGR00763 206 KLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIEKDDKDELEKLKEKLEELK 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHhcC
Confidence 45555555555566666666553 46666666664321 1223456666665554
No 366
>PRK13318 pantothenate kinase; Reviewed
Probab=20.26 E-value=93 Score=34.76 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=17.1
Q ss_pred EEEEEccCccEEEEEEECC
Q psy7140 562 VIGIDFGTESCYLSVAKSG 580 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g 580 (1304)
+++||+|.|+++++++.++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 6899999999999999854
No 367
>PRK13321 pantothenate kinase; Reviewed
Probab=20.19 E-value=93 Score=34.72 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=17.1
Q ss_pred EEEEEccCccEEEEEEECC
Q psy7140 562 VIGIDFGTESCYLSVAKSG 580 (1304)
Q Consensus 562 vvGID~Gtt~s~va~~~~g 580 (1304)
+++||+|+|++++|++.++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 5899999999999999855
No 368
>PLN03168 chalcone synthase; Provisional
Probab=20.15 E-value=2.4e+02 Score=33.73 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCC-CCChhHHHHHHHHcCCCC
Q psy7140 870 EHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGS-SRIPAFKNVIESVFHKPP 921 (1304)
Q Consensus 870 ~~~~~~i~~~i~~~l~~~~~~~~~I~~V~LvGG~-srip~v~~~l~~~fg~~~ 921 (1304)
+...+=..+..+++|+++|+++++|+.|+++-.+ -.+|.+--.|.+.+|...
T Consensus 99 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 151 (389)
T PLN03168 99 VQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKP 151 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCC
Confidence 3444555778899999999999999999876433 358999999999998654
Done!