RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7140
(1304 letters)
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 648 bits (1674), Expect = 0.0
Identities = 224/383 (58%), Positives = 291/383 (75%), Gaps = 2/383 (0%)
Query: 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 620
SV+GIDFG + ++VA+ GGI+ + N+YS R TPS V+F +K R++G AAKNQ ++N K
Sbjct: 1 SVVGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNFK 60
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT+ FKRL+GR +DDP VQ+ELK +PF+ ++ DG +GIKVNYL +E VFSPEQ+ AML
Sbjct: 61 NTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAML 120
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
TKLK+I+E ++ KV DCV++VPSYFT+ +R+ALL AA IAGLN LRL+NETTATALAY
Sbjct: 121 LTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY 180
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
GIYK DLPE++ PR VAFVD G+S+ QV I AF KGKLKVLS D +GGR+ D+ L
Sbjct: 181 GIYKTDLPEEE-KPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEALF 239
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAEL 860
E+ + +F ++YKID +N +A +RLL+ EKLKK +SAN+ + PLNIEC M+DKDV ++
Sbjct: 240 EHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANT-EAPLNIECLMEDKDVSGKI 298
Query: 861 KRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 920
KR + E LC + R+E L K +AE+ L IHS+EIVGGS+RIPA K +I VF K
Sbjct: 299 KREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVFGKE 358
Query: 921 PSTTLNQDEAVSRGCALQCAILS 943
STTLN DEAV+RGCALQCA+LS
Sbjct: 359 LSTTLNADEAVARGCALQCAMLS 381
Score = 634 bits (1637), Expect = 0.0
Identities = 225/413 (54%), Positives = 290/413 (70%), Gaps = 32/413 (7%)
Query: 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 61
SV+GIDFG + ++VA+ GGI+ + N+YS R TPS V+F +K R++G AAKNQ ++N K
Sbjct: 1 SVVGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNFK 60
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT+ FKRL+GR +DDP VQ+ELK +PF V+
Sbjct: 61 NTVRNFKRLIGRKFDDPEVQKELKFLPF------------------KVVELP-------- 94
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
DG +GIKVNYL +E VFSPEQ+ AML TKLK+I+E ++ KV DCV++VPSYFT+
Sbjct: 95 ----DGKVGIKVNYLGEEKVFSPEQVLAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDA 150
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+ALL AA IAGLN LRL+NETTATALAYGIYK DLPE++ PR VAFVD G+S+ QV
Sbjct: 151 QRRALLDAAQIAGLNCLRLMNETTATALAYGIYKTDLPEEE-KPRNVAFVDIGHSSTQVS 209
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
I AF KGKLKVLS D +GGR+ D+ L E+ + +F ++YKID +N +A +RLL+ E
Sbjct: 210 IVAFNKGKLKVLSTAFDRNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACE 269
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 361
KLKK +SAN+ + PLNIEC M+DKDV ++KR + E LC + R+E L K +AE+ L
Sbjct: 270 KLKKVLSANT-EAPLNIECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLT 328
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILS 414
IHS+EIVGGS+RIPA K +I VF K STTLN DEAV+RGCALQCA+LS
Sbjct: 329 KEDIHSVEIVGGSTRIPAVKELIAKVFGKELSTTLNADEAVARGCALQCAMLS 381
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold many
proteins. Hsp70 assisted folding involves repeated cycles
of substrate binding and release. Hsp70 activity is ATP
dependent. Hsp70 proteins are made up of two regions: the
amino terminus is the ATPase domain and the carboxyl
terminus is the substrate binding region.
Length = 598
Score = 535 bits (1380), Expect = e-176
Identities = 209/626 (33%), Positives = 325/626 (51%), Gaps = 35/626 (5%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 621
VIGID GT + ++V + GG E I ND R+TPS VAF+ K R++G AAK Q VTN KN
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPKN 60
Query: 622 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLF 681
T+F KRL+GR + DP VQ ++K +P++ +K +G G++V YL + F+PEQ++AM+
Sbjct: 61 TVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE--TFTPEQISAMVL 118
Query: 682 TKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYG 741
KLK+ +E + V D V+ VP+YF + +R+A A IAGLNVLR+INE TA ALAYG
Sbjct: 119 QKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYG 178
Query: 742 IYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAE 801
+ K+D R V D G V I G +VL+ D+ +GG + D L +
Sbjct: 179 LDKKD------KERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVD 232
Query: 802 YISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFM-DDKDVHAEL 860
+ +F K+Y ID + RA RL EK K ++S+N ++ L M D KDV L
Sbjct: 233 HFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTL 292
Query: 861 KRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 920
R E LC +F R + K + ++KL + I + +VGGS+RIPA + +++ F K
Sbjct: 293 TRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE 352
Query: 921 PSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQ--NYPIKVAWNPVGGEDGENLAF 978
PS +N DEAV+ G A+Q +LS ++ + DV + I+ + N
Sbjct: 353 PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTI 412
Query: 979 SSTQPVPFTKVLTFYRANVFDVQAYYDCP--VPYPTQFVGQFIIKDIKPGPKGKPQKVKV 1036
T+ + V ++Q Y P +G F + I P P+G PQ ++V
Sbjct: 413 -PTKKSQIFSTAADNQTAV-EIQVYQGEREMAPDNKL-LGSFELDGIPPAPRGVPQ-IEV 468
Query: 1037 KMTVNVHGVFSVTSASMFEDLEDQKEMFKCD--LPYDSVFNHYLANIKVHDLFELECKMQ 1094
++ +G+ +V++ E QK L D ++ + + +
Sbjct: 469 TFDIDANGILTVSAKDKGTGKE-QKITITASSGLSDD----------EIERMVKDAEEYA 517
Query: 1095 DNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQD 1154
D++ K+R++AKN EEYVY L L ++ D + ++++ KK++E WL EE +
Sbjct: 518 AEDKKRKERIEAKNEAEEYVYSLEKSL-KEEGDKLPEADK----KKVEEAIEWLKEELEG 572
Query: 1155 VNRSVYNDRLNSLRTVGDPVKMRAME 1180
++ + L+ V P+ R +
Sbjct: 573 EDKEEIEAKTEELQKVVQPIGERMYQ 598
Score = 447 bits (1151), Expect = e-143
Identities = 167/476 (35%), Positives = 245/476 (51%), Gaps = 43/476 (9%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 62
VIGID GT + ++V + GG E I ND R+TPS VAF+ K R++G AAK Q VTN KN
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPKN 60
Query: 63 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSL 122
T+F KRL+GR + DP VQ ++K +P++ V+
Sbjct: 61 TVFSVKRLIGRKFSDPVVQRDIKHVPYK------------------VVKLP--------- 93
Query: 123 KQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNE 182
+G G++V YL + F+PEQ++AM+ KLK+ +E + V D V+ VP+YF + +
Sbjct: 94 ---NGDAGVEVRYLGE--TFTPEQISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQ 148
Query: 183 RKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCI 242
R+A A IAGLNVLR+INE TA ALAYG+ K+D R V D G V I
Sbjct: 149 RQATKDAGRIAGLNVLRIINEPTAAALAYGLDKKD------KERNVLVFDLGGGTFDVSI 202
Query: 243 AAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEK 302
G +VL+ D+ +GG + D L ++ +F K+Y ID + RA RL EK
Sbjct: 203 LEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEK 262
Query: 303 LKKQMSANSNKLPLNIECFM-DDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 361
K ++S+N ++ L M D KDV L R E LC +F R + K + ++KL
Sbjct: 263 AKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLS 322
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRH 421
+ I + +VGGS+RIPA + +++ F K PS +N DEAV+ G A+Q +LS ++
Sbjct: 323 KSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNPDEAVAIGAAVQAGVLSGTFDVKD 382
Query: 422 FDVTDVQ--NYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYY 475
+ DV + I+ + N T+ + V ++Q Y
Sbjct: 383 VLLLDVTPLSLGIETLGGVMTKLIPRNTTI-PTKKSQIFSTAADNQTAV-EIQVYQ 436
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 469 bits (1207), Expect = e-154
Identities = 204/383 (53%), Positives = 275/383 (71%)
Query: 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 620
SV+G D G +SCY++VA++GGIET+ N++S R TPS ++F KNR +GVAAKNQ +T+
Sbjct: 1 SVVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHAN 60
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT+ FKR GR ++DPFVQ+E +++ + + +G +G+KV Y+ +EH+FS EQ+TAML
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAML 120
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
TKLK+ +EN ++ V DCV++VPS+FT+ ER+++L AA I GLN LRL+N+ TA AL Y
Sbjct: 121 LTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNY 180
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
GIYKQDLP D+ PR V FVD G+SA QV AF KGKLKVL D +GG+N D+ L
Sbjct: 181 GIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 240
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAEL 860
E+ +F +YK+D ++ RA +RL E EKLKK MS+NS LPLNIECFM+DKDV ++
Sbjct: 241 EHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKM 300
Query: 861 KRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 920
R+ E LC + RIE+ L + ++ L V + ++EIVGG++RIPA K I F K
Sbjct: 301 NRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKD 360
Query: 921 PSTTLNQDEAVSRGCALQCAILS 943
STTLN DEAV+RGCALQCAILS
Sbjct: 361 VSTTLNADEAVARGCALQCAILS 383
Score = 454 bits (1170), Expect = e-149
Identities = 206/413 (49%), Positives = 276/413 (66%), Gaps = 30/413 (7%)
Query: 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 61
SV+G D G +SCY++VA++GGIET+ N++S R TPS ++F KNR +GVAAKNQ +T+
Sbjct: 1 SVVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHAN 60
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT+ FKR GR ++DPFVQ+E K+N + +
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKE---------KEN---------------------LSYDL 90
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
+ +G +G+KV Y+ +EH+FS EQ+TAML TKLK+ +EN ++ V DCV++VPS+FT+
Sbjct: 91 VPLKNGGVGVKVMYMGEEHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDA 150
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
ER+++L AA I GLN LRL+N+ TA AL YGIYKQDLP D+ PR V FVD G+SA QV
Sbjct: 151 ERRSVLDAAQIVGLNCLRLMNDMTAVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVS 210
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
AF KGKLKVL D +GG+N D+ L E+ +F +YK+D ++ RA +RL E E
Sbjct: 211 ACAFNKGKLKVLGTAFDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECE 270
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 361
KLKK MS+NS LPLNIECFM+DKDV ++ R+ E LC + RIE+ L + ++ L
Sbjct: 271 KLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLK 330
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILS 414
V + ++EIVGG++RIPA K I F K STTLN DEAV+RGCALQCAILS
Sbjct: 331 VEDVSAVEIVGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 461 bits (1186), Expect = e-151
Identities = 204/383 (53%), Positives = 275/383 (71%)
Query: 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 620
SV+GID G +SCY++VA++GGIETI N+YS R TP+C++F KNR +G AAK+Q ++N K
Sbjct: 1 SVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNAK 60
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT+ GFKR GR + DPFVQ E S+ + ++ GS GIKV Y+ +E F+ EQ+TAML
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
TKLK+ +E+ ++ V DCV++VP ++T+ ER++++ A IAGLN LRL+NETTA ALAY
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAY 180
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
GIYKQDLP ++ PR V FVD G+SA QV + AF KGKLKVL+ D+ +GGR D++L
Sbjct: 181 GIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLV 240
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAEL 860
Y +F K+YK+D ++ RA +RL E EKLKK MSAN++ LPLNIECFM+D DV +
Sbjct: 241 NYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTM 300
Query: 861 KRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 920
R +C+ + R+E L + ++KL I+++EIVGG++RIPA K I F K
Sbjct: 301 NRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKFFGKE 360
Query: 921 PSTTLNQDEAVSRGCALQCAILS 943
STTLN DEAV+RGCALQCAILS
Sbjct: 361 VSTTLNADEAVARGCALQCAILS 383
Score = 449 bits (1157), Expect = e-147
Identities = 206/413 (49%), Positives = 277/413 (67%), Gaps = 30/413 (7%)
Query: 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 61
SV+GID G +SCY++VA++GGIETI N+YS R TP+C++F KNR +G AAK+Q ++N K
Sbjct: 1 SVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNAK 60
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT+ GFKR GR + DPFVQ E S+ + +L +P
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAY-----------------------DLVQLP--- 94
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
GS GIKV Y+ +E F+ EQ+TAML TKLK+ +E+ ++ V DCV++VP ++T+
Sbjct: 95 ----TGSTGIKVMYMEEERNFTTEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDA 150
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
ER++++ A IAGLN LRL+NETTA ALAYGIYKQDLP ++ PR V FVD G+SA QV
Sbjct: 151 ERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVS 210
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
+ AF KGKLKVL+ D+ +GGR D++L Y +F K+YK+D ++ RA +RL E E
Sbjct: 211 VCAFNKGKLKVLATAFDTTLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECE 270
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 361
KLKK MSAN++ LPLNIECFM+D DV + R +C+ + R+E L + ++KL
Sbjct: 271 KLKKLMSANASDLPLNIECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLK 330
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILS 414
I+++EIVGG++RIPA K I F K STTLN DEAV+RGCALQCAILS
Sbjct: 331 KEDIYAVEIVGGATRIPAVKEKISKFFGKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 443 bits (1140), Expect = e-144
Identities = 211/383 (55%), Positives = 279/383 (72%)
Query: 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 620
SV+GID G +CY++VA+SGGIETI N+YS R TP+C++ + R +G AAK+Q VTNV+
Sbjct: 1 SVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVR 60
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NTI GFK+L GR++DDP VQ E +P++ K +GS+G+KV YL +E F+ EQ+T ML
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
KLK+ SEN ++ V DCV+++PS+FT+ ER++++ AA +AGLN LRL+NETTA ALAY
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
GIYKQDLP D+ PR V F+D G+SA QV + AF KGKLKVL+ D +GGRN D+ L
Sbjct: 181 GIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALV 240
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAEL 860
+Y +F +YKI+ + N+RA +RL E EKLKK MSAN++ LPLNIECFM+D DV +++
Sbjct: 241 DYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKM 300
Query: 861 KRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 920
R E LC + R+E L + ++ L I+SIEIVGG++RIPA K I S F K
Sbjct: 301 NRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFLKD 360
Query: 921 PSTTLNQDEAVSRGCALQCAILS 943
STTLN DEAV+RGCALQCAILS
Sbjct: 361 ISTTLNADEAVARGCALQCAILS 383
Score = 433 bits (1114), Expect = e-140
Identities = 214/413 (51%), Positives = 282/413 (68%), Gaps = 30/413 (7%)
Query: 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 61
SV+GID G +CY++VA+SGGIETI N+YS R TP+C++ + R +G AAK+Q VTNV+
Sbjct: 1 SVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVR 60
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NTI GFK+L GR++DDP VQ E +P+ EL+ MP
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPY-----------------------ELQKMP--- 94
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
+GS+G+KV YL +E F+ EQ+T ML KLK+ SEN ++ V DCV+++PS+FT+
Sbjct: 95 ----NGSVGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDA 150
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
ER++++ AA +AGLN LRL+NETTA ALAYGIYKQDLP D+ PR V F+D G+SA QV
Sbjct: 151 ERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVS 210
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
+ AF KGKLKVL+ D +GGRN D+ L +Y +F +YKI+ + N+RA +RL E E
Sbjct: 211 VCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECE 270
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 361
KLKK MSAN++ LPLNIECFM+D DV +++ R E LC + R+E L + ++ L
Sbjct: 271 KLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQ 330
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILS 414
I+SIEIVGG++RIPA K I S F K STTLN DEAV+RGCALQCAILS
Sbjct: 331 REDIYSIEIVGGATRIPAVKEQITSFFLKDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 333 bits (856), Expect = e-104
Identities = 134/380 (35%), Positives = 203/380 (53%), Gaps = 13/380 (3%)
Query: 563 IGIDFGTESCYLSVAK-SGGIETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTVTNVK 620
IGID GT + ++ G E I N R+TPS V F +L G AAK Q + N +
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT+ FKRL+GR +DDP VQ K + + G+ I V +SPE+++A++
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKVI-----GVDRGAPIIPVPVELGGKKYSPEEVSALI 115
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
KLK+ +E + V + V+ VP+YF + +R+A AA IAGLNV+RLINE TA ALAY
Sbjct: 116 LKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAY 175
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
G+ K+D R + D G V + G +VL+ D+ +GG + D LA
Sbjct: 176 GLDKKDEKG-----RTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALA 230
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAEL 860
+Y++ F ++ ID R + RA RL EK K +S +S + + + D+ EL
Sbjct: 231 DYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALS-SSEEATITLPGLGSGGDLEVEL 289
Query: 861 KRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 920
R + E L + R + + +A++ L I ++ +VGGSSRIP + ++E +F K
Sbjct: 290 TREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKK 349
Query: 921 PSTTLNQDEAVSRGCALQCA 940
P +++ DEAV+ G A+ A
Sbjct: 350 PLRSIDPDEAVALGAAIYAA 369
Score = 321 bits (826), Expect = 1e-99
Identities = 134/410 (32%), Positives = 203/410 (49%), Gaps = 43/410 (10%)
Query: 4 IGIDFGTESCYLSVAK-SGGIETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTVTNVK 61
IGID GT + ++ G E I N R+TPS V F +L G AAK Q + N +
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT+ FKRL+GR +DDP VQ K +
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKVI---------------------------------- 86
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
+ G+ I V +SPE+++A++ KLK+ +E + V + V+ VP+YF +
Sbjct: 87 -GVDRGAPIIPVPVELGGKKYSPEEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDA 145
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A AA IAGLNV+RLINE TA ALAYG+ K+D R + D G V
Sbjct: 146 QREATKEAAEIAGLNVVRLINEPTAAALAYGLDKKDEKG-----RTILVFDLGGGTFDVS 200
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
+ G +VL+ D+ +GG + D LA+Y++ F ++ ID R + RA RL E
Sbjct: 201 LVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEAAE 260
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 361
K K +S +S + + + D+ EL R + E L + R + + +A++ L
Sbjct: 261 KAKIALS-SSEEATITLPGLGSGGDLEVELTREEFEELIRPLLERTIDLVERVLADAGLK 319
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCA 411
I ++ +VGGSSRIP + ++E +F K P +++ DEAV+ G A+ A
Sbjct: 320 PEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSIDPDEAVALGAAIYAA 369
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 326 bits (838), Expect = e-101
Identities = 161/378 (42%), Positives = 239/378 (63%), Gaps = 1/378 (0%)
Query: 563 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNT 622
G+D G + L+VA++ GI+ +VN+ S RSTPS V F KNR LG KN+ +N+KNT
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNT 60
Query: 623 IFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFT 682
+ KR++G Y P ++E K + ++ +D G +V + ++HVFS QL AM
Sbjct: 61 VANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFID 120
Query: 683 KLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGI 742
K+KD + + + + D +AVP ++T +R + AA IAGLN +R++N+ TA ++YGI
Sbjct: 121 KVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGI 180
Query: 743 YKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEY 802
+K DLPE ++ PR VAFVD G+S+ I AF KG+LKVL CD GGR+ D + E+
Sbjct: 181 FKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITEH 240
Query: 803 ISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKR 862
+ +F +YKID R N +AY R+L+ EKLKK +SAN+N P ++E M+D DV ++L R
Sbjct: 241 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNA-PFSVESVMNDVDVSSQLSR 299
Query: 863 NDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPS 922
+LE L + + R+ + K +A++KL + +EI+GG++RIP K I F KP S
Sbjct: 300 EELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLS 359
Query: 923 TTLNQDEAVSRGCALQCA 940
TTLNQDEA+++G A CA
Sbjct: 360 TTLNQDEAIAKGAAFICA 377
Score = 315 bits (807), Expect = 7e-97
Identities = 163/408 (39%), Positives = 236/408 (57%), Gaps = 31/408 (7%)
Query: 4 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNT 63
G+D G + L+VA++ GI+ +VN+ S RSTPS V F KNR LG KN+ +N+KNT
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNT 60
Query: 64 IFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLK 123
+ KR++G Y P ++E K L DD E
Sbjct: 61 VANLKRIIGLDYHHPDFEQESKHF-TSKL----------VELDDKKTGAE---------- 99
Query: 124 QNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNER 183
V + ++HVFS QL AM K+KD + + + + D +AVP ++T +R
Sbjct: 100 ---------VRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQR 150
Query: 184 KALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIA 243
+ AA IAGLN +R++N+ TA ++YGI+K DLPE ++ PR VAFVD G+S+ I
Sbjct: 151 YNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIV 210
Query: 244 AFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKL 303
AF KG+LKVL CD GGR+ D + E+ + +F +YKID R N +AY R+L+ EKL
Sbjct: 211 AFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKL 270
Query: 304 KKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVN 363
KK +SAN+N P ++E M+D DV ++L R +LE L + + R+ + K +A++KL
Sbjct: 271 KKVLSANTNA-PFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAE 329
Query: 364 AIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCA 411
+ +EI+GG++RIP K I F KP STTLNQDEA+++G A CA
Sbjct: 330 EVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICA 377
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 326 bits (837), Expect = 3e-98
Identities = 180/602 (29%), Positives = 285/602 (47%), Gaps = 62/602 (10%)
Query: 560 MSVIGIDFGTESCYLSVAKSGG-IETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTVT 617
IGID GT + ++V + GG + I N R TPS VAFS +L G AAK Q V
Sbjct: 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVD 64
Query: 618 NVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLT 677
N +NTIF KR +GR GS G+K++ ++PE+++
Sbjct: 65 NPENTIFSIKRKIGR-----------------------GSNGLKISVEVDGKKYTPEEIS 101
Query: 678 AMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATA 737
AM+ TKLK+ +E + KV D V+ VP+YF + +R+A AA IAGLNVLRLINE TA A
Sbjct: 102 AMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAA 161
Query: 738 LAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDK 797
LAYG+ D + V D G V + G +VL+ D+ +GG + D
Sbjct: 162 LAYGL-------DKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDN 214
Query: 798 ILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVH 857
L +Y+ +F + ID R++ A RL EK K ++S+ + +N+ D D+
Sbjct: 215 ALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQ-TSINLPSIGGDIDLL 273
Query: 858 AELKRNDLETLCEHIFGR-IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESV 916
EL R E L + R IE + + ++ L + I + +VGGS+RIPA + +++
Sbjct: 274 KELTRAKFEELILDLLERTIEPV-EQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEF 332
Query: 917 FHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENL 976
F K P ++N DEAV+ G A+Q A+LS V DV + + G +
Sbjct: 333 FGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLL--LDVIPLSLGIETL---GGVRTPI 387
Query: 977 AFSSTQPVPFTKVLTFYRANVFDVQAYYDCPVPY-------PTQFVGQFIIKDIKPGPKG 1029
+T +P K F A D Q V + +G+F + I P P+G
Sbjct: 388 IERNT-TIPVKKSQEFSTA--ADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRG 444
Query: 1030 KPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFEL 1089
PQ ++V ++ +G+ +VT+ DL KE + + L++ ++ + E
Sbjct: 445 VPQ-IEVTFDIDANGILNVTAK----DLGTGKEQ---SITIKASSG--LSDEEIERMVED 494
Query: 1090 ECKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLY 1149
D++ ++ V+A+N E +Y L L + +++ + + + + + E L
Sbjct: 495 AEANAALDKKFRELVEARNEAESLIYSLEKAL--KEIVKVSEEEKEKIEEAITDLEEALE 552
Query: 1150 EE 1151
E
Sbjct: 553 GE 554
Score = 288 bits (738), Expect = 1e-84
Identities = 141/429 (32%), Positives = 204/429 (47%), Gaps = 66/429 (15%)
Query: 1 MSVIGIDFGTESCYLSVAKSGG-IETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTVT 58
IGID GT + ++V + GG + I N R TPS VAFS +L G AAK Q V
Sbjct: 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVD 64
Query: 59 NVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMP 118
N +NTIF KR +GR GS G + +
Sbjct: 65 NPENTIFSIKRKIGR-----------------------GSNGLKISVEV----------- 90
Query: 119 FQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYF 178
++PE+++AM+ TKLK+ +E + KV D V+ VP+YF
Sbjct: 91 -------------------DGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYF 131
Query: 179 TNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSAL 238
+ +R+A AA IAGLNVLRLINE TA ALAYG+ D + V D G
Sbjct: 132 NDAQRQATKDAARIAGLNVLRLINEPTAAALAYGL-------DKGKEKTVLVYDLGGGTF 184
Query: 239 QVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLS 298
V + G +VL+ D+ +GG + D L +Y+ +F + ID R++ A RL
Sbjct: 185 DVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLRE 244
Query: 299 EIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGR-IEICLNKCIAE 357
EK K ++S+ + +N+ D D+ EL R E L + R IE + + +
Sbjct: 245 AAEKAKIELSSATQ-TSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPV-EQALKD 302
Query: 358 SKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAV 417
+ L + I + +VGGS+RIPA + +++ F K P ++N DEAV+ G A+Q A+LS V
Sbjct: 303 AGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEV 362
Query: 418 KIRHF-DVT 425
DV
Sbjct: 363 PDVLLLDVI 371
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 313 bits (804), Expect = 5e-93
Identities = 194/636 (30%), Positives = 334/636 (52%), Gaps = 52/636 (8%)
Query: 563 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNT 622
IGID GT + V K+ +E I ND R+TPS VAF+D R++G AAKNQ N +NT
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENT 66
Query: 623 IFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFT 682
+F KRL+GR +DD VQ ++K PF+ D I+V Y ++ F PE++++M+
Sbjct: 67 VFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQ 126
Query: 683 KLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGI 742
K+K+I+E + +V D V+ VP+YF +++R+A A +IAGLNVLR+INE TA A+AYG+
Sbjct: 127 KMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 186
Query: 743 YKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEY 802
K+ E + V D G V + G +V + D+ +GG + D L E+
Sbjct: 187 DKKGDGE-----KNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEF 241
Query: 803 ISTDFVKRYK-IDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELK 861
DF ++ + D +N RA RL ++ E+ K+ +S+ S + + I+ + D + +
Sbjct: 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSS-STQATIEIDSLFEGIDYNVTIS 300
Query: 862 RNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KP 920
R E LC F + K + ++ + ++H + +VGGS+RIP +++I+ F+ K
Sbjct: 301 RARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKE 360
Query: 921 PSTTLNQDEAVSRGCALQCAILS--PAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAF 978
P ++N DEAV+ G A+Q AIL+ + +++ + DV P+ + GG + +
Sbjct: 361 PCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVT--PLSLGLETAGGVMTKLIER 418
Query: 979 SSTQPVPFTKVLTFYRANVFDV--QAY-------YDCPVPYPTQFVGQFIIKDIKPGPKG 1029
++T P +++ T Y N V Q + D +G+F + I P P+G
Sbjct: 419 NTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDN------NLLGKFHLDGIPPAPRG 472
Query: 1030 KPQKVKVKMTVNVHGVFSVTS-------ASMFEDLEDQKEMFKCDLPYDSVFNHYLANIK 1082
PQ ++V ++ +G+ +V++ ++ D+ + K D+ D + N
Sbjct: 473 VPQ-IEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADI--DRMVN------- 522
Query: 1083 VHDLFELECKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDK-ADFITDSNRNVLNKKL 1141
E E K + D ++RV+AKN LE Y Y +++ L ++K ++DS++ + K +
Sbjct: 523 -----EAE-KYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAI 576
Query: 1142 DETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMR 1177
DE WL E+ Q + + + + +V +P+ +
Sbjct: 577 DEALEWL-EKNQLAEKEEFEHKQKEVESVCNPIMTK 611
Score = 253 bits (649), Expect = 5e-72
Identities = 141/413 (34%), Positives = 223/413 (53%), Gaps = 38/413 (9%)
Query: 4 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNT 63
IGID GT + V K+ +E I ND R+TPS VAF+D R++G AAKNQ N +NT
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENT 66
Query: 64 IFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLK 123
+F KRL+GR +DD VQ ++K PF+ D K M
Sbjct: 67 VFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDD-----------------KPM------ 103
Query: 124 QNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNER 183
I+V Y ++ F PE++++M+ K+K+I+E + +V D V+ VP+YF +++R
Sbjct: 104 -------IEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQR 156
Query: 184 KALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIA 243
+A A +IAGLNVLR+INE TA A+AYG+ K+ E + V D G V +
Sbjct: 157 QATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGE-----KNVLIFDLGGGTFDVSLL 211
Query: 244 AFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYK-IDPRTNARAYIRLLSEIEK 302
G +V + D+ +GG + D L E+ DF ++ + D +N RA RL ++ E+
Sbjct: 212 TIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCER 271
Query: 303 LKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPV 362
K+ +S+ S + + I+ + D + + R E LC F + K + ++ +
Sbjct: 272 AKRTLSS-STQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDK 330
Query: 363 NAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSRGCALQCAILS 414
++H + +VGGS+RIP +++I+ F+ K P ++N DEAV+ G A+Q AIL+
Sbjct: 331 RSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILT 383
Score = 30.9 bits (70), Expect = 5.8
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 1168 RTVGDPVKMRAMEYAMRPNI-----LEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLST 1222
R V + K +A + A R + LE Y +S+++ + D KG LS D +T
Sbjct: 519 RMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNT--LQDEKVKGK-----LSDSDKAT 571
Query: 1223 VETAIKQHVKWI--------EEKVSKLKSLPKHENPPIT 1253
+E AI + ++W+ EE K K + NP +T
Sbjct: 572 IEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMT 610
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 286 bits (734), Expect = 2e-86
Identities = 128/396 (32%), Positives = 197/396 (49%), Gaps = 26/396 (6%)
Query: 563 IGIDFGTESCYLSVAKSG-GIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 621
+GID G+E +++ K G E ++N+ S R TPS VAF R+ G A + +
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQ 60
Query: 622 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQND---GSIGIKVNYLNKEHVFSPEQLTA 678
K LLG+ DDP V P D G++ K++ +S E+L A
Sbjct: 61 VYLHLKDLLGKPADDPSVSLYQSRHPL-PYLVVDESRGTVAFKIS---DGEEYSVEELVA 116
Query: 679 MLFTKLKDISENEI-QNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATA 737
M+ K ++E + V D V+ VP YFT +R+ALL AA +AGLNVL L+N+ TA A
Sbjct: 117 MILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAA 176
Query: 738 LAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFV----------KGKLKVLSNVCD 787
L Y + D ++ P+YV F D G + + F +++VL D
Sbjct: 177 LNYAL---DRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWD 233
Query: 788 SEIGGRNIDKILAEYISTDFVKRYKIDP--RTNARAYIRLLSEIEKLKKQMSANSNKLPL 845
+GGR D LA++++ +F +++K RTN RA +LL E + K+ +SANS P+
Sbjct: 234 RTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSE-APV 292
Query: 846 NIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSR 905
+IE DD D ++ R + E LC +F R + K + + L + I S+E++GG++R
Sbjct: 293 SIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATR 352
Query: 906 IPAFKNVIESVFHKPP-STTLNQDEAVSRGCALQCA 940
+P + + K LN DEA + G A A
Sbjct: 353 VPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
Score = 276 bits (709), Expect = 5e-83
Identities = 129/423 (30%), Positives = 198/423 (46%), Gaps = 50/423 (11%)
Query: 4 IGIDFGTESCYLSVAKSG-GIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 62
+GID G+E +++ K G E ++N+ S R TPS VAF R+ G A + +
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQ 60
Query: 63 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSL 122
K LLG+ DDP V P V E
Sbjct: 61 VYLHLKDLLGKPADDPSVSLYQSRHPL----------------PYLVVDES--------- 95
Query: 123 KQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEI-QNKVHDCVLAVPSYFTNN 181
G++ K++ +S E+L AM+ K ++E + V D V+ VP YFT
Sbjct: 96 ---RGTVAFKIS---DGEEYSVEELVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQA 149
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+ALL AA +AGLNVL L+N+ TA AL Y + D ++ P+YV F D G +
Sbjct: 150 QRQALLDAAELAGLNVLALVNDGTAAALNYAL---DRRFENNKPQYVLFYDMGAGSTTAT 206
Query: 242 IAAFV----------KGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDP--RTN 289
+ F +++VL D +GGR D LA++++ +F +++K RTN
Sbjct: 207 VVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTN 266
Query: 290 ARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEI 349
RA +LL E + K+ +SANS P++IE DD D ++ R + E LC +F R
Sbjct: 267 PRAMAKLLKEANRAKEVLSANSE-APVSIESLYDDIDFKTKITRAEFEELCADLFERAVA 325
Query: 350 CLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPP-STTLNQDEAVSRGCAL 408
+ K + + L + I S+E++GG++R+P + + K LN DEA + G A
Sbjct: 326 PIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAY 385
Query: 409 QCA 411
A
Sbjct: 386 YAA 388
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 278 bits (713), Expect = 1e-83
Identities = 144/383 (37%), Positives = 220/383 (57%), Gaps = 10/383 (2%)
Query: 563 IGIDFGTE-SCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 621
IGID GT SC + V + G +E I ND R+TPS VAF+D R++G AAKNQ N N
Sbjct: 2 IGIDLGTTYSC-VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTN 60
Query: 622 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLF 681
T+F KRL+GR + DP VQ ++K PF+ + G I V Y + F PE++++M+
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVV-NGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 682 TKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYG 741
TK+K+I+E + V + V+ VP+YF +++R+A A +IAGLNVLR+INE TA A+AYG
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 742 IYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAE 801
+ K+ E R V D G V + G +V + D+ +GG + D L
Sbjct: 180 LDKKGGGE-----RNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVN 234
Query: 802 YISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELK 861
+ +F +++K D N RA RL + E+ K+ +S+ S + + I+ + D + +
Sbjct: 235 HFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGIDFYTSIT 293
Query: 862 RNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KP 920
R E LC +F + K + ++KL + IH I +VGGS+RIP + +++ F+ K
Sbjct: 294 RARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 353
Query: 921 PSTTLNQDEAVSRGCALQCAILS 943
+ ++N DEAV+ G A+Q AILS
Sbjct: 354 LNKSINPDEAVAYGAAVQAAILS 376
Score = 268 bits (686), Expect = 5e-80
Identities = 143/413 (34%), Positives = 220/413 (53%), Gaps = 40/413 (9%)
Query: 4 IGIDFGTE-SCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 62
IGID GT SC + V + G +E I ND R+TPS VAF+D R++G AAKNQ N N
Sbjct: 2 IGIDLGTTYSC-VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTN 60
Query: 63 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSL 122
T+F KRL+GR + DP VQ ++K PF+ + P + E
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGG----------GKPPIIVE--------- 101
Query: 123 KQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNE 182
Y + F PE++++M+ TK+K+I+E + V + V+ VP+YF +++
Sbjct: 102 ------------YKGETKTFYPEEISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQ 149
Query: 183 RKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCI 242
R+A A +IAGLNVLR+INE TA A+AYG+ K+ E R V D G V +
Sbjct: 150 RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGGGE-----RNVLIFDLGGGTFDVSL 204
Query: 243 AAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEK 302
G +V + D+ +GG + D L + +F +++K D N RA RL + E+
Sbjct: 205 LTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACER 264
Query: 303 LKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPV 362
K+ +S+ S + + I+ + D + + R E LC +F + K + ++KL
Sbjct: 265 AKRTLSS-STQASIEIDSLFEGIDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDK 323
Query: 363 NAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSRGCALQCAILS 414
+ IH I +VGGS+RIP + +++ F+ K + ++N DEAV+ G A+Q AILS
Sbjct: 324 SQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 276 bits (709), Expect = 4e-83
Identities = 143/380 (37%), Positives = 224/380 (58%), Gaps = 11/380 (2%)
Query: 561 SVIGIDFGTE-SCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNV 619
+VIGID GT SC + V K+G +E I ND R TPS VAF+D R++G AAKNQ +N
Sbjct: 2 TVIGIDLGTTYSC-VGVFKNGRVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNP 60
Query: 620 KNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAM 679
+NTIF KRL+GR +DD VQ+++K +P++ + DG I+V+ ++ FSPE+++AM
Sbjct: 61 ENTIFDVKRLIGRKFDDKEVQKDIKLLPYK-VVNKDGKPYIEVDVKGEKKTFSPEEISAM 119
Query: 680 LFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALA 739
+ TK+K+I+E + KV V+ VP+YF + +R+A A +IAGLNV+R+INE TA A+A
Sbjct: 120 VLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIA 179
Query: 740 YGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799
YG+ K+ + + D G V + G +VL+ D+ +GG + D+ +
Sbjct: 180 YGLDKKG------GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRV 233
Query: 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAE 859
E+ F K++ D + RA +L E+EK K+ +S+ ++ + IE D +D
Sbjct: 234 MEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSS-QHQTRIEIESLFDGEDFSET 292
Query: 860 LKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH- 918
L R E L +F + + K + ++ L + I I +VGGS+RIP + +++ F+
Sbjct: 293 LTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNG 352
Query: 919 KPPSTTLNQDEAVSRGCALQ 938
K PS +N DEAV+ G A+Q
Sbjct: 353 KEPSRGINPDEAVAYGAAVQ 372
Score = 266 bits (683), Expect = 1e-79
Identities = 141/410 (34%), Positives = 226/410 (55%), Gaps = 41/410 (10%)
Query: 2 SVIGIDFGTE-SCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNV 60
+VIGID GT SC + V K+G +E I ND R TPS VAF+D R++G AAKNQ +N
Sbjct: 2 TVIGIDLGTTYSC-VGVFKNGRVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNP 60
Query: 61 KNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQ 120
+NTIF KRL+GR +DD VQ+++K +P++ + ++ P+++
Sbjct: 61 ENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGK----------PYIE--------- 101
Query: 121 SLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTN 180
V+ ++ FSPE+++AM+ TK+K+I+E + KV V+ VP+YF +
Sbjct: 102 ------------VDVKGEKKTFSPEEISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFND 149
Query: 181 NERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240
+R+A A +IAGLNV+R+INE TA A+AYG+ K+ + + D G V
Sbjct: 150 AQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKG------GEKNILVFDLGGGTFDV 203
Query: 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEI 300
+ G +VL+ D+ +GG + D+ + E+ F K++ D + RA +L E+
Sbjct: 204 SLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRREV 263
Query: 301 EKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKL 360
EK K+ +S+ ++ + IE D +D L R E L +F + + K + ++ L
Sbjct: 264 EKAKRALSS-QHQTRIEIESLFDGEDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADL 322
Query: 361 PVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSRGCALQ 409
+ I I +VGGS+RIP + +++ F+ K PS +N DEAV+ G A+Q
Sbjct: 323 KKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSRGINPDEAVAYGAAVQ 372
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this family
are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone
system. All members of the seed alignment were taken from
completely sequenced bacterial or archaeal genomes and
(except for Mycoplasma sequence) found clustered with
other genes of this systems. This model excludes DnaK
homologs that are not DnaK itself, such as the heat shock
cognate protein HscA (TIGR01991). However, it is not
designed to distinguish among DnaK paralogs in
eukaryotes. Note that a number of dnaK genes have shadow
ORFs in the same reverse (relative to dnaK) reading
frame, a few of which have been assigned glutamate
dehydrogenase activity. The significance of this
observation is unclear; lengths of such shadow ORFs are
highly variable as if the presumptive protein product is
not conserved [Protein fate, Protein folding and
stabilization].
Length = 595
Score = 274 bits (704), Expect = 7e-80
Identities = 177/613 (28%), Positives = 302/613 (49%), Gaps = 61/613 (9%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTVTNVK 620
+IGID GT + ++V + G I N R+TPS VAF+ R++G AK Q VTN +
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPE 61
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NTI+ KR +GR +D+ V EE K +P++ + G + +KV+ KE ++P++++AM+
Sbjct: 62 NTIYSIKRFMGRRFDE--VTEEAKRVPYKVVGDG-GDVRVKVD--GKE--YTPQEISAMI 114
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
KLK +E + KV + V+ VP+YF + +R+A A IAGL VLR+INE TA ALAY
Sbjct: 115 LQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY 174
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
G+ K E + D G V I G +VLS D+ +GG + D+ +
Sbjct: 175 GLDKSKKDEK------ILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRII 228
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMS-ANSNKLPLNIECFMDDKDVHAE 859
++++ +F K ID + A RL EK K ++S S ++ L H E
Sbjct: 229 DWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLE 288
Query: 860 LK--RNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF 917
+ R E L + R + + + + ++ L + I + +VGGS+RIPA + +++ F
Sbjct: 289 MTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF 348
Query: 918 HKPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVTDVQNYPIKVAWNPVGGEDGENL 976
K P+ ++N DE V+ G A+Q +L VK + DVT P+ + +GG + +
Sbjct: 349 GKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVT-----PLSLGIETLGGVMTKLI 403
Query: 977 AFSSTQPVPFTKVLTFYRAN--VFDVQAYY-DCPVPYPTQFVGQFIIKDIKPGPKGKPQK 1033
++T P ++V + N D+ + P+ + +G+F + I P P+G PQ
Sbjct: 404 ERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQ- 462
Query: 1034 VKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHD---LFELE 1090
++V ++ +G+ V++ +D KE +I + L E E
Sbjct: 463 IEVTFDIDANGILHVSA----KDKGTGKEQ----------------SITITASSGLSEEE 502
Query: 1091 C-KM-------QDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLD 1142
+M + D++ K+ ++A+N + Y+ L + D + + + K +
Sbjct: 503 IERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTL-KEAGDKLPAEEKEKIEKAVA 561
Query: 1143 ETENWLYEEGQDV 1155
E + L +G+DV
Sbjct: 562 ELKEAL--KGEDV 572
Score = 249 bits (637), Expect = 6e-71
Identities = 136/428 (31%), Positives = 214/428 (50%), Gaps = 48/428 (11%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTVTNVK 61
+IGID GT + ++V + G I N R+TPS VAF+ R++G AK Q VTN +
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPE 61
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NTI+ KR +GR +D+ V EE K +P++
Sbjct: 62 NTIYSIKRFMGRRFDE--------------------------------VTEEAKRVPYKV 89
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
+ G + +KV+ KE ++P++++AM+ KLK +E + KV + V+ VP+YF +
Sbjct: 90 VGDG-GDVRVKVD--GKE--YTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDA 144
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A A IAGL VLR+INE TA ALAYG+ K E + D G V
Sbjct: 145 QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEK------ILVFDLGGGTFDVS 198
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
I G +VLS D+ +GG + D+ + ++++ +F K ID + A RL E
Sbjct: 199 ILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAE 258
Query: 302 KLKKQMS-ANSNKLPLNIECFMDDKDVHAELK--RNDLETLCEHIFGRIEICLNKCIAES 358
K K ++S S ++ L H E+ R E L + R + + + + ++
Sbjct: 259 KAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDA 318
Query: 359 KLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVK 418
L + I + +VGGS+RIPA + +++ F K P+ ++N DE V+ G A+Q +L VK
Sbjct: 319 GLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVK 378
Query: 419 -IRHFDVT 425
+ DVT
Sbjct: 379 DVLLLDVT 386
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 248 bits (635), Expect = 4e-73
Identities = 131/388 (33%), Positives = 210/388 (54%), Gaps = 22/388 (5%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTVTNVK 620
+IGID GT + ++V + G I N R+TPS VAF+ K L G AK Q VTN +
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPE 63
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NTIF KR +GR +D+ V+EE K +P++ + G+ ++++ K+ ++P++++AM+
Sbjct: 64 NTIFSIKRFMGRKFDE--VEEERK-VPYKVVVDEGGNYKVEIDSNGKD--YTPQEISAMI 118
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
KLK+ +E + KV + V+ VP+YF +++R+A A IAGL VLR+INE TA ALAY
Sbjct: 119 LQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 178
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
G+ D + + D G V I G +VL+ D+ +GG + D+ +
Sbjct: 179 GL-------DKKGNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRII 231
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIE---CFMDD---K 854
+++ +F K ID R + A RL EK K ++ S+ I D K
Sbjct: 232 DWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIEL---SSVTETEINLPFITADATGPK 288
Query: 855 DVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIE 914
+ L R E L E + R + + + ++KL + I + +VGGS+RIPA + +++
Sbjct: 289 HLEMTLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVK 348
Query: 915 SVFHKPPSTTLNQDEAVSRGCALQCAIL 942
+F K P+ +N DE V+ G A+Q +L
Sbjct: 349 ELFGKEPNKGVNPDEVVAIGAAIQGGVL 376
Score = 236 bits (605), Expect = 4e-69
Identities = 131/418 (31%), Positives = 210/418 (50%), Gaps = 52/418 (12%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTVTNVK 61
+IGID GT + ++V + G I N R+TPS VAF+ K L G AK Q VTN +
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPE 63
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NTIF KR +GR +D+ V+EE K +P++
Sbjct: 64 NTIFSIKRFMGRKFDE--------------------------------VEEERK-VPYKV 90
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
+ G+ ++++ K+ ++P++++AM+ KLK+ +E + KV + V+ VP+YF ++
Sbjct: 91 VVDEGGNYKVEIDSNGKD--YTPQEISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDS 148
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A A IAGL VLR+INE TA ALAYG+ D + + D G V
Sbjct: 149 QRQATKDAGKIAGLEVLRIINEPTAAALAYGL-------DKKGNEKILVYDLGGGTFDVS 201
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
I G +VL+ D+ +GG + D+ + +++ +F K ID R + A RL E
Sbjct: 202 ILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAE 261
Query: 302 KLKKQMSANSNKLPLNIE---CFMDD---KDVHAELKRNDLETLCEHIFGRIEICLNKCI 355
K K ++ S+ I D K + L R E L E + R + + +
Sbjct: 262 KAKIEL---SSVTETEINLPFITADATGPKHLEMTLTRAKFEELTEDLVERTIEPVKQAL 318
Query: 356 AESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAIL 413
++KL + I + +VGGS+RIPA + +++ +F K P+ +N DE V+ G A+Q +L
Sbjct: 319 KDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVNPDEVVAIGAAIQGGVL 376
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 247 bits (633), Expect = 7e-73
Identities = 123/382 (32%), Positives = 205/382 (53%), Gaps = 11/382 (2%)
Query: 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 620
++IGID GT + ++V I N R+TPS V+F+ ++G AAK Q + +
Sbjct: 3 TIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPE 62
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT F KRL+GR + D VQ ++K ++ ++ +G I N +SP Q+ + +
Sbjct: 63 NTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGK----KYSPSQIASFV 118
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
KLK +E + +V + V+ VP+YF +++R+A A ++AGL VLR+INE TA ALAY
Sbjct: 119 LKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAY 178
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
GI + + + +A D G + I G +V + D+ +GG + D +
Sbjct: 179 GI------DKRKENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIV 232
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAEL 860
+YI +F ++YKID N +A R+ EK K ++S +S + + + K + +
Sbjct: 233 QYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELS-SSEESVIELPYLDGPKHLRITI 291
Query: 861 KRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 920
R + E L + I R +C+ ++ L I + +VGG +R+P +NV++ +F K
Sbjct: 292 TRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKK 351
Query: 921 PSTTLNQDEAVSRGCALQCAIL 942
PS ++N DEAV+ G A+Q +IL
Sbjct: 352 PSKSVNPDEAVALGAAIQGSIL 373
Score = 234 bits (598), Expect = 3e-68
Identities = 122/412 (29%), Positives = 206/412 (50%), Gaps = 41/412 (9%)
Query: 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 61
++IGID GT + ++V I N R+TPS V+F+ ++G AAK Q + +
Sbjct: 3 TIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPE 62
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT F KRL+GR + D VQ ++K ++ ++ +G +
Sbjct: 63 NTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNG----------------------DA 100
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
+G +SP Q+ + + KLK +E + +V + V+ VP+YF ++
Sbjct: 101 WIYTNGKK------------YSPSQIASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDS 148
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A A ++AGL VLR+INE TA ALAYGI + + + +A D G +
Sbjct: 149 QRQATKDAGTLAGLKVLRIINEPTAAALAYGI------DKRKENKNIAVYDLGGGTFDIS 202
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
I G +V + D+ +GG + D + +YI +F ++YKID N +A R+ E
Sbjct: 203 ILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEAAE 262
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 361
K K ++S +S + + + K + + R + E L + I R +C+ ++ L
Sbjct: 263 KAKIELS-SSEESVIELPYLDGPKHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLR 321
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAIL 413
I + +VGG +R+P +NV++ +F K PS ++N DEAV+ G A+Q +IL
Sbjct: 322 KKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKSVNPDEAVALGAAIQGSIL 373
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 247 bits (632), Expect = 1e-72
Identities = 133/387 (34%), Positives = 216/387 (55%), Gaps = 19/387 (4%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTVTNVK 620
VIGID GT + ++V + + I N R+TPS VAF+ R++G+ AK Q VTN +
Sbjct: 4 VIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPE 63
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT++ KRL+GR +DDP VQ+++K++P++ +K ++G ++ +SP Q+ A +
Sbjct: 64 NTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEA----HGKKYSPSQIGAFV 119
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
K+K+ +E + V + V+ VP+YF +++R+A A IAGLNVLR+INE TA ALAY
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
G+ K+D + +A D G + I KG +V S D+ +GG + D L
Sbjct: 180 GLDKKD-------DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALL 232
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDD----KDV 856
++ +F K ID + A RL EK K ++S+ S + +N+ D K +
Sbjct: 233 RHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSS-SLQTDINLPYITADASGPKHL 291
Query: 857 HAELKRNDLETLCEHIFGR-IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIES 915
+ +L R E+L + R IE C K + ++ + + I + +VGG +R+P + ++
Sbjct: 292 NMKLTRAKFESLVGDLIKRTIEPC-KKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKE 350
Query: 916 VFHKPPSTTLNQDEAVSRGCALQCAIL 942
+F K PS +N DEAV+ G A+Q +L
Sbjct: 351 IFGKEPSKGVNPDEAVAIGAAIQGGVL 377
Score = 236 bits (603), Expect = 9e-69
Identities = 136/417 (32%), Positives = 219/417 (52%), Gaps = 49/417 (11%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTVTNVK 61
VIGID GT + ++V + + I N R+TPS VAF+ R++G+ AK Q VTN +
Sbjct: 4 VIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPE 63
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT++ KRL+GR +DDP VQ+++K++P++ +K ++G D +V+ K
Sbjct: 64 NTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNG---------DAWVEAHGK------ 108
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
+SP Q+ A + K+K+ +E + V + V+ VP+YF ++
Sbjct: 109 -------------------KYSPSQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDS 149
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A A IAGLNVLR+INE TA ALAYG+ K+D + +A D G +
Sbjct: 150 QRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKKD-------DKVIAVYDLGGGTFDIS 202
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
I KG +V S D+ +GG + D L ++ +F K ID + A RL E
Sbjct: 203 ILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKEFKKEQGIDLTKDNMALQRLREAAE 262
Query: 302 KLKKQMSANSNKLPLNIECFMDD----KDVHAELKRNDLETLCEHIFGR-IEICLNKCIA 356
K K ++S+ S + +N+ D K ++ +L R E+L + R IE C K +
Sbjct: 263 KAKIELSS-SLQTDINLPYITADASGPKHLNMKLTRAKFESLVGDLIKRTIEPC-KKALK 320
Query: 357 ESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAIL 413
++ + + I + +VGG +R+P + ++ +F K PS +N DEAV+ G A+Q +L
Sbjct: 321 DAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEPSKGVNPDEAVAIGAAIQGGVL 377
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 250 bits (641), Expect = 8e-71
Identities = 172/603 (28%), Positives = 314/603 (52%), Gaps = 45/603 (7%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTVTNVK 620
++GID GT + +++ + + I N +R+TPS VAF++ R++G+ AK Q VTN +
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPE 102
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT+F KRL+GR YD+ ++E K +P++ ++ ++G I+ K+ +SP Q+ A +
Sbjct: 103 NTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQ--GKK--YSPSQIGAFV 158
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
K+K+ +E+ + KV V+ VP+YF +++R+A A IAGL+VLR+INE TA ALA+
Sbjct: 159 LEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
G+ K D + +A D G + I + G +V + ++ +GG + D+ +
Sbjct: 219 GMDKND-------GKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPLNIECFMDDKDVH 857
Y+ +F K+ ID + + A RL E K ++S+ + LP K +
Sbjct: 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQ 331
Query: 858 AELKRNDLETLCEHIF-GRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESV 916
+L R LE L + IE C KCI ++ + + ++ + +VGG +R+P ++ +
Sbjct: 332 IKLSRAKLEELTHDLLKKTIEPC-EKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKI 390
Query: 917 FHKPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVTDVQNYPIKVAWNPVGGEDGEN 975
F K PS +N DEAV+ G A+Q +L +K + DVT P+ + +GG
Sbjct: 391 FGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVT-----PLSLGIETLGGVFTRL 445
Query: 976 LAFSSTQPVPFTKVLTFYRAN-------VFDVQAYYDCPVPYPTQFVGQFIIKDIKPGPK 1028
+ ++T P ++V + N VF + + +GQF + I P P+
Sbjct: 446 INRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAA----DNKLLGQFDLVGIPPAPR 501
Query: 1029 GKPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFE 1088
G PQ ++V V+ +G+ ++++ D+ K ++ S + L++ ++ + +
Sbjct: 502 GVPQ-IEVTFDVDANGIMNISAV-------DKSTGKKQEITIQS--SGGLSDEEIEKMVK 551
Query: 1089 LECKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWL 1148
+ ++ D ++K+ VDAKN E +Y + L+ D D I+D++++ L +K+ + + L
Sbjct: 552 EAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS-DLKDKISDADKDELKQKITKLRSTL 610
Query: 1149 YEE 1151
E
Sbjct: 611 SSE 613
Score = 220 bits (561), Expect = 2e-60
Identities = 126/421 (29%), Positives = 218/421 (51%), Gaps = 47/421 (11%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTVTNVK 61
++GID GT + +++ + + I N +R+TPS VAF++ R++G+ AK Q VTN +
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPE 102
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT+F KRL+GR YD+ ++E K +P++ ++ ++G D +++ + K
Sbjct: 103 NTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNG---------DAWIEAQGKK----- 148
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
+SP Q+ A + K+K+ +E+ + KV V+ VP+YF ++
Sbjct: 149 --------------------YSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDS 188
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A A IAGL+VLR+INE TA ALA+G+ K D + +A D G +
Sbjct: 189 QRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKND-------GKTIAVYDLGGGTFDIS 241
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
I + G +V + ++ +GG + D+ + Y+ +F K+ ID + + A RL E
Sbjct: 242 ILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAE 301
Query: 302 KLKKQMSANSN---KLPLNIECFMDDKDVHAELKRNDLETLCEHIF-GRIEICLNKCIAE 357
K ++S+ + LP K + +L R LE L + IE C KCI +
Sbjct: 302 TAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPC-EKCIKD 360
Query: 358 SKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAV 417
+ + + ++ + +VGG +R+P ++ +F K PS +N DEAV+ G A+Q +L +
Sbjct: 361 AGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEI 420
Query: 418 K 418
K
Sbjct: 421 K 421
Score = 31.3 bits (71), Expect = 4.4
Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 1189 EEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWIEEKVSKLKSLPKHE 1248
EEYK + K +VDA + + + KQ + +++K++KL+S E
Sbjct: 554 EEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE 613
Query: 1249 NPPITCDQIREEKYKFEKSVWSVLNKPKPAPPAPNSTTPSEQSSEENVQQQNMETD 1304
+ D I+++ + +++ W + + ++ + N ++ + D
Sbjct: 614 DV----DSIKDKTKQLQEASWKISQQAY----KQGNSDNQQSEQSTNSEESEEKND 661
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 243 bits (622), Expect = 1e-68
Identities = 176/627 (28%), Positives = 310/627 (49%), Gaps = 47/627 (7%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-NRILGVAAKNQTVTNVK 620
V+GID GT + ++V + G I N R+TPS VA++ K + ++G AK Q V N +
Sbjct: 4 VVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPE 63
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT + KR +GR + + + EE K + ++ ++G+I I+ LNK+ FSPE+++A +
Sbjct: 64 NTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPALNKD--FSPEEISAQV 119
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
KL + + + V V+ VP+YF +++R+A A IAGL VLR+INE TA +LAY
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
G+ K+ N + F D G V I G +VLS D+ +GG + DK +
Sbjct: 180 GLDKK------NNETILVF-DLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIV 232
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKD----V 856
++ +F K+ ID + +A RL EK K ++S N + +N+ + +
Sbjct: 233 NWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELS-NLTQTEINLPFITATQTGPKHI 291
Query: 857 HAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESV 916
L R E LC + R I + + ++KL + I + +VGGS+RIPA + +++ +
Sbjct: 292 EKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKL 351
Query: 917 FHKPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVTDVQNYPIKVAWNPVGGEDGEN 975
K P+ ++N DE V+ G A+Q +L+ VK I DVT P+ + +GG +
Sbjct: 352 LGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVT-----PLSLGVETLGGVMTKI 406
Query: 976 LAFSSTQPVPFTKVLTFYRANVFDVQAYY---DCPVPYPTQFVGQFIIKDIKPGPKGKPQ 1032
+ ++T P ++V + N +V+ + + + + +G F + I P P+G PQ
Sbjct: 407 IPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQ 466
Query: 1033 KVKVKMTVNVHGVFSVTSASMFEDLEDQKEMF-----KCDLPYDSVFNHYLANIKVHDLF 1087
++V ++ +G+ SVT+ +D KE LP D +V +
Sbjct: 467 -IEVTFDIDANGILSVTA----KDKGTGKEQSITIQGASTLPKD----------EVERMV 511
Query: 1088 ELECKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENW 1147
+ K D+++++++D KN E Y+ L + D I++ + + + +
Sbjct: 512 KEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQL-KELKDKISEEKKEKIENLIKKLRQA 570
Query: 1148 LYEEGQDVNRSVYNDRLNSLRTVGDPV 1174
L + + +S+ + +L +G V
Sbjct: 571 LQNDNYESIKSLLEELQKALMEIGKEV 597
Score = 218 bits (557), Expect = 4e-60
Identities = 133/429 (31%), Positives = 215/429 (50%), Gaps = 48/429 (11%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-NRILGVAAKNQTVTNVK 61
V+GID GT + ++V + G I N R+TPS VA++ K + ++G AK Q V N +
Sbjct: 4 VVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPE 63
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT + KR +GR + + + EE K + ++
Sbjct: 64 NTFYSVKRFIGRKFSE--------------------------------ISEEAKQVSYKV 91
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
++G+I I+ LNK+ FSPE+++A + KL + + + V V+ VP+YF ++
Sbjct: 92 KTDSNGNIKIECPALNKD--FSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDS 149
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A A IAGL VLR+INE TA +LAYG+ K+ N + F D G V
Sbjct: 150 QRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK------NNETILVF-DLGGGTFDVS 202
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
I G +VLS D+ +GG + DK + ++ +F K+ ID + +A RL E
Sbjct: 203 ILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAE 262
Query: 302 KLKKQMSANSNKLPLNIECFMDDKD----VHAELKRNDLETLCEHIFGRIEICLNKCIAE 357
K K ++S N + +N+ + + L R E LC + R I + + +
Sbjct: 263 KAKIELS-NLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKD 321
Query: 358 SKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAV 417
+KL + I + +VGGS+RIPA + +++ + K P+ ++N DE V+ G A+Q +L+ V
Sbjct: 322 AKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEV 381
Query: 418 K-IRHFDVT 425
K I DVT
Sbjct: 382 KDILLLDVT 390
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 228 bits (583), Expect = 4e-66
Identities = 123/381 (32%), Positives = 203/381 (53%), Gaps = 7/381 (1%)
Query: 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 620
+ IG+ FG S L+V K G + + ND R TP+ VAF+D I+G+AAK + N
Sbjct: 1 AAIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAA 60
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NTI K++LGR+Y DPF Q+E + + + DG ++ K SP+++ ++
Sbjct: 61 NTIVKNKQILGRSYSDPFKQKEKTESSCK-IIEKDGEPKYEIFTEEKTKHVSPKEVAKLI 119
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
F K+K+I+++ + + D V+ VP YF+ ++ AL AA AG NVLR+I+E +A ALAY
Sbjct: 120 FKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAY 179
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
GI QD P YV G ++ V I G +VL+ D +GG + + L+
Sbjct: 180 GIG-QDSPTG---KSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLS 235
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAEL 860
+Y++ +F +++K D R NARA ++L + E K+ +S +E + D +
Sbjct: 236 QYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILST-LPSANCFVESLYEGIDFQCSV 294
Query: 861 KRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF-HK 919
R E+LC +F + + K + ++ L I+ + + GGSSRIP + +I+ +F
Sbjct: 295 SRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSV 354
Query: 920 PPSTTLNQDEAVSRGCALQCA 940
+++ DE ++ G A Q
Sbjct: 355 EVLNSISPDEVIAIGAAKQAG 375
Score = 217 bits (554), Expect = 3e-62
Identities = 122/411 (29%), Positives = 203/411 (49%), Gaps = 37/411 (9%)
Query: 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 61
+ IG+ FG S L+V K G + + ND R TP+ VAF+D I+G+AAK + N
Sbjct: 1 AAIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAA 60
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NTI K++LGR+Y DPF Q+E + ++++ + E
Sbjct: 61 NTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKD--------GEPKYEIFTE-------- 104
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
K SP+++ ++F K+K+I+++ + + D V+ VP YF+
Sbjct: 105 ---------------EKTKHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITVPVYFSEK 149
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
++ AL AA AG NVLR+I+E +A ALAYGI QD P YV G ++ V
Sbjct: 150 QKLALREAAEEAGFNVLRIIHEPSAAALAYGIG-QDSPTG---KSYVLVYRLGGTSTDVT 205
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
I G +VL+ D +GG + + L++Y++ +F +++K D R NARA ++L + E
Sbjct: 206 ILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANEFKRKWKQDVRGNARAMMKLNNAAE 265
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 361
K+ +S +E + D + R E+LC +F + + K + ++ L
Sbjct: 266 VAKQILST-LPSANCFVESLYEGIDFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLT 324
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVF-HKPPSTTLNQDEAVSRGCALQCA 411
I+ + + GGSSRIP + +I+ +F +++ DE ++ G A Q
Sbjct: 325 KTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNSISPDEVIAIGAAKQAG 375
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 236 bits (604), Expect = 5e-66
Identities = 152/500 (30%), Positives = 255/500 (51%), Gaps = 31/500 (6%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTVTNVK 620
VIGID GT + ++V + G I N R+TPS V F R++G AK Q VTN +
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAE 63
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT++ KR +GR +DD +EE +P+ +K D ++ +++ + ++P++++AM+
Sbjct: 64 NTVYSIKRFIGRRWDD--TEEERSRVPYTCVKGRDDTVNVQI----RGRNYTPQEISAMI 117
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
KLK +E + V V+ VP+YFT+ +R+A A +IAGL VLR+INE TA ALAY
Sbjct: 118 LQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAY 177
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
G+ KQ DQ + F D G V I G +V + ++ +GG + D +
Sbjct: 178 GLDKQ-----DQEQLILVF-DLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIV 231
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSA---NSNKLPLNIECFMDDKDVH 857
+++ +F ++ ID + A RL EK K ++S+ S LP K +
Sbjct: 232 DWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLE 291
Query: 858 AELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVF 917
EL R E L + + + + + ++ L I + +VGGS+RIPA + I+ F
Sbjct: 292 MELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFF 351
Query: 918 H-KPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVTDVQNYPIKVAWNPVGGEDGEN 975
K P ++N DEAV+ G A+Q +L VK + DVT P+ + +G +
Sbjct: 352 GGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVT-----PLSLGIETLGEVFTKI 406
Query: 976 LAFSSTQPVPFTKVLTFYRA----NVFDVQAYY-DCPVPYPTQFVGQFIIKDIKPGPKGK 1030
+ ++T +P +K F A ++ + + + +G+F++ I P P+G
Sbjct: 407 IERNTT--IPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGV 464
Query: 1031 PQKVKVKMTVNVHGVFSVTS 1050
PQ ++V ++V+G+ V++
Sbjct: 465 PQ-IEVSFEIDVNGILKVSA 483
Score = 218 bits (558), Expect = 5e-60
Identities = 133/429 (31%), Positives = 209/429 (48%), Gaps = 48/429 (11%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTVTNVK 61
VIGID GT + ++V + G I N R+TPS V F R++G AK Q VTN +
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAE 63
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT++ KR +GR +DD +EE +P+
Sbjct: 64 NTVYSIKRFIGRRWDD--------------------------------TEEERSRVPYTC 91
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
+K D ++ +++ + ++P++++AM+ KLK +E + V V+ VP+YFT+
Sbjct: 92 VKGRDDTVNVQI----RGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDA 147
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A A +IAGL VLR+INE TA ALAYG+ KQ DQ + F D G V
Sbjct: 148 QRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQ-----DQEQLILVF-DLGGGTFDVS 201
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
I G +V + ++ +GG + D + +++ +F ++ ID + A RL E
Sbjct: 202 ILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAE 261
Query: 302 KLKKQMSA---NSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAES 358
K K ++S+ S LP K + EL R E L + + + + + ++
Sbjct: 262 KAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDA 321
Query: 359 KLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSRGCALQCAILSPAV 417
L I + +VGGS+RIPA + I+ F K P ++N DEAV+ G A+Q +L V
Sbjct: 322 GLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEV 381
Query: 418 K-IRHFDVT 425
K + DVT
Sbjct: 382 KDLLLLDVT 390
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 225 bits (575), Expect = 6e-65
Identities = 115/389 (29%), Positives = 194/389 (49%), Gaps = 16/389 (4%)
Query: 561 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 620
+VIGI+FG ++ G + I N+ R PS +++ + G AK Q + N K
Sbjct: 1 TVIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHGEQEYHGNQAKAQLIRNAK 60
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQ-SLKQNDGSIGIKVNYLNKEHVFSPEQLTAM 679
NTI F+ LLG+ + + V + P ++ G++ K + KE + + ++T
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVR 120
Query: 680 LFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALA 739
+LK+ +E+ + KV VL+VP++F++ + +AL+ AA AGL VL+LI E A LA
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 740 YGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799
Y + ++ + V DFG + V + A G +L+ D +GG +D L
Sbjct: 181 YD-AGEPTEDEALDRNVVV-ADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDAL 238
Query: 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAE 859
++ + +F K+ K DPRTNARA +L +E E KK +S S ++E + D H+
Sbjct: 239 VKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLS-ASTSATCSVESLAEGIDFHSS 297
Query: 860 LKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHK 919
+ R E L +F + + +A++ L I + +VGG++ P + + +F
Sbjct: 298 INRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLF-- 355
Query: 920 PPSTT----------LNQDEAVSRGCALQ 938
P +TT L+ E V+RGCA+Q
Sbjct: 356 PETTTITAPITVSKALDPSELVARGCAIQ 384
Score = 217 bits (554), Expect = 4e-62
Identities = 118/418 (28%), Positives = 196/418 (46%), Gaps = 44/418 (10%)
Query: 2 SVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 61
+VIGI+FG ++ G + I N+ R PS +++ + G AK Q + N K
Sbjct: 1 TVIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHGEQEYHGNQAKAQLIRNAK 60
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NTI F+ LLG+ + + V + P + D VQE+ + +P
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVP-VAVIDVGG---------TVQEKEEPVP--- 107
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
KE + + ++T +LK+ +E+ + KV VL+VP++F++
Sbjct: 108 ----------------KETILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDE 151
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+ +AL+ AA AGL VL+LI E A LAY + ++ + V DFG + V
Sbjct: 152 QTEALVKAAEAAGLPVLQLIPEPAAALLAYD-AGEPTEDEALDRNVVV-ADFGGTRTDVS 209
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
+ A G +L+ D +GG +D L ++ + +F K+ K DPRTNARA +L +E E
Sbjct: 210 VIAVRGGLYTILATAHDPGLGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESE 269
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 361
KK +S S ++E + D H+ + R E L +F + + +A++ L
Sbjct: 270 ITKKTLS-ASTSATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLD 328
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTT----------LNQDEAVSRGCALQ 409
I + +VGG++ P + + +F P +TT L+ E V+RGCA+Q
Sbjct: 329 ALDIDEVLLVGGTAFTPKLASNLSYLF--PETTTITAPITVSKALDPSELVARGCAIQ 384
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 233 bits (595), Expect = 9e-65
Identities = 169/572 (29%), Positives = 281/572 (49%), Gaps = 52/572 (9%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIV-NDYSLRSTPSCVAFS-DKNRILGVAAKNQTVTNV 619
V+GID GT + ++ A GG TIV N R+TPS VA++ + +R++G AK Q V N
Sbjct: 41 VVGIDLGTTNSAVA-AMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 620 KNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAM 679
+NT F KR +GR + V EE K + ++ ++ +G++ + + K+ F+ E+++A
Sbjct: 100 ENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIGKQ--FAAEEISAQ 155
Query: 680 LFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALA 739
+ KL D + + +KV V+ VP+YF +++R A A IAGL VLR+INE TA +LA
Sbjct: 156 VLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLA 215
Query: 740 YGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799
YG + ++ + D G V + G +VLS D+ +GG + DK +
Sbjct: 216 YGF-------EKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRI 268
Query: 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPLNIECFMDDKDV 856
++++++F K ID + +A RL EK K ++S+ + LP K +
Sbjct: 269 VDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHI 328
Query: 857 HAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESV 916
L R E LC + R + + + ++KL I + +VGGS+RIPA + +++ +
Sbjct: 329 DTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKL 388
Query: 917 FHKPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVTDVQNYPIKVAWNPVGGEDGEN 975
K P+ T+N DE V+ G A+Q +L+ V I DVT P+ + +GG
Sbjct: 389 TGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVT-----PLSLGLETLGG----- 438
Query: 976 LAFSSTQPVPFTKVLTFYRANVFDVQAYYDCPVPYPT-----QFV------GQFIIKDIK 1024
T+ +P L ++ VF A V +FV G F + I
Sbjct: 439 ---VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIP 495
Query: 1025 PGPKGKPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVH 1084
P P+G PQ ++VK ++ +G+ SV++ D+ K D+ L +V
Sbjct: 496 PAPRGVPQ-IEVKFDIDANGILSVSAT-------DKGTGKKQDITITGAST--LPKDEVE 545
Query: 1085 DLFELECKMQDNDRQEKDRVDAKNALEEYVYE 1116
+ + K D++++D VD KN + VY+
Sbjct: 546 RMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQ 577
Score = 203 bits (519), Expect = 8e-55
Identities = 133/445 (29%), Positives = 219/445 (49%), Gaps = 53/445 (11%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIV-NDYSLRSTPSCVAFS-DKNRILGVAAKNQTVTNV 60
V+GID GT + ++ A GG TIV N R+TPS VA++ + +R++G AK Q V N
Sbjct: 41 VVGIDLGTTNSAVA-AMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 61 KNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQ 120
+NT F KR +GR + V EE K + ++
Sbjct: 100 ENTFFSVKRFIGRKMSE--------------------------------VDEESKQVSYR 127
Query: 121 SLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTN 180
++ +G++ + + K+ F+ E+++A + KL D + + +KV V+ VP+YF +
Sbjct: 128 VVRDENGNVKLDCPAIGKQ--FAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFND 185
Query: 181 NERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240
++R A A IAGL VLR+INE TA +LAYG + ++ + D G V
Sbjct: 186 SQRTATKDAGRIAGLEVLRIINEPTAASLAYGF-------EKKSNETILVFDLGGGTFDV 238
Query: 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEI 300
+ G +VLS D+ +GG + DK + ++++++F K ID + +A RL
Sbjct: 239 SVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAA 298
Query: 301 EKLKKQMSANSN---KLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAE 357
EK K ++S+ + LP K + L R E LC + R + + + +
Sbjct: 299 EKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRD 358
Query: 358 SKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAV 417
+KL I + +VGGS+RIPA + +++ + K P+ T+N DE V+ G A+Q +L+ V
Sbjct: 359 AKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEV 418
Query: 418 K-IRHFDVTDVQNYPIKVAWNPVGG 441
I DVT P+ + +GG
Sbjct: 419 SDIVLLDVT-----PLSLGLETLGG 438
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 231 bits (593), Expect = 1e-64
Identities = 145/409 (35%), Positives = 222/409 (54%), Gaps = 35/409 (8%)
Query: 560 MS-VIGIDFGT-ESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTV 616
M +IGID GT SC ++V + G + I N R+TPS VAF+ L G AK Q V
Sbjct: 1 MGKIIGIDLGTTNSC-VAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAV 59
Query: 617 TNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQL 676
TN +NTIF KRL+GR D VQ+++K +P++ +K ++G ++++ K+ ++P+++
Sbjct: 60 TNPENTIFSIKRLMGR--RDEEVQKDIKLVPYKIVKADNGDAWVEID--GKK--YTPQEI 113
Query: 677 TAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTAT 736
+AM+ KLK +E+ + KV + V+ VP+YF + +R+A A IAGL VLR+INE TA
Sbjct: 114 SAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAA 173
Query: 737 ALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNID 796
ALAYG+ D + + D G V I G +VLS D+ +GG + D
Sbjct: 174 ALAYGL-------DKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFD 226
Query: 797 KILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKK----QMSANSNKLPLNIECF-- 850
+ + +Y++ +F K ID R + A RL EK K N LP F
Sbjct: 227 QRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEIN-LP-----FIT 280
Query: 851 MDD---KDVHAELKRNDLETLCEHIFGR-IEICLNKCIAESKLPVNAIHSIEIVGGSSRI 906
D K + +L R E L E + R IE C + + ++ L V+ I + +VGGS+R+
Sbjct: 281 ADASGPKHLEIKLTRAKFEELTEDLVERTIEPC-KQALKDAGLSVSDIDEVILVGGSTRM 339
Query: 907 PAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVT 954
PA + +++ F K P+ +N DE V+ G A+Q +L+ VK + DVT
Sbjct: 340 PAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVT 388
Score = 220 bits (563), Expect = 9e-61
Identities = 145/439 (33%), Positives = 222/439 (50%), Gaps = 65/439 (14%)
Query: 1 MS-VIGIDFGT-ESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTV 57
M +IGID GT SC ++V + G + I N R+TPS VAF+ L G AK Q V
Sbjct: 1 MGKIIGIDLGTTNSC-VAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAV 59
Query: 58 TNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSM 117
TN +NTIF KRL+GR D VQ+++K +
Sbjct: 60 TNPENTIFSIKRLMGR--------------------------------RDEEVQKDIKLV 87
Query: 118 PFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSY 177
P++ +K ++G ++++ K+ ++P++++AM+ KLK +E+ + KV + V+ VP+Y
Sbjct: 88 PYKIVKADNGDAWVEID--GKK--YTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAY 143
Query: 178 FTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSA 237
F + +R+A A IAGL VLR+INE TA ALAYG+ D + + D G
Sbjct: 144 FNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL-------DKKGDEKILVYDLGGGT 196
Query: 238 LQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLL 297
V I G +VLS D+ +GG + D+ + +Y++ +F K ID R + A RL
Sbjct: 197 FDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLK 256
Query: 298 SEIEKLKK----QMSANSNKLPLNIECF--MDD---KDVHAELKRNDLETLCEHIFGR-I 347
EK K N LP F D K + +L R E L E + R I
Sbjct: 257 EAAEKAKIELSSAQQTEIN-LP-----FITADASGPKHLEIKLTRAKFEELTEDLVERTI 310
Query: 348 EICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCA 407
E C + + ++ L V+ I + +VGGS+R+PA + +++ F K P+ +N DE V+ G A
Sbjct: 311 EPC-KQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAA 369
Query: 408 LQCAILSPAVK-IRHFDVT 425
+Q +L+ VK + DVT
Sbjct: 370 IQGGVLAGDVKDVLLLDVT 388
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 215 bits (549), Expect = 6e-62
Identities = 104/382 (27%), Positives = 189/382 (49%), Gaps = 47/382 (12%)
Query: 563 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTVTNVKN 621
IGID GT + ++V + G I N TPS V+ + IL G AA+ + +T+
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 622 TIFGFKRLLG--RTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAM 679
T FKR +G + Y +G + F E+L+++
Sbjct: 61 TAASFKRFMGTDKKYR----------------------LG--------KREFRAEELSSL 90
Query: 680 LFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALA 739
+ LK+ +E + V + V++VP+YF + +RKA A +AGL V RLINE TA ALA
Sbjct: 91 VLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALA 150
Query: 740 YGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799
YG++ +D ++ +++ F D G V + G ++V ++ D+ +GG + + L
Sbjct: 151 YGLHDKD---EET--KFLVF-DLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRAL 204
Query: 800 AEYISTDFVKRYKIDPRT-NARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHA 858
AE F+K++ +D + RLL E+ K+ + S++ + ++ +++
Sbjct: 205 AEA----FLKKHGLDFEKLDPSELARLLRAAERAKRAL---SDQEEAEMSVRIEGEELEY 257
Query: 859 ELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH 918
L R + E +C+ + R+ + + + +++L + I I +VGG++R+P + ++ +F
Sbjct: 258 TLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFG 317
Query: 919 KPPSTTLNQDEAVSRGCALQCA 940
+ P LN DE V+ G A+Q
Sbjct: 318 RFPLVHLNPDEVVALGAAIQAG 339
Score = 185 bits (471), Expect = 1e-51
Identities = 77/274 (28%), Positives = 149/274 (54%), Gaps = 14/274 (5%)
Query: 139 EHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVL 198
+ F E+L++++ LK+ +E + V + V++VP+YF + +RKA A +AGL V
Sbjct: 79 KREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVE 138
Query: 199 RLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCD 258
RLINE TA ALAYG++ +D ++ +++ F D G V + G ++V ++ D
Sbjct: 139 RLINEPTAAALAYGLHDKD---EET--KFLVF-DLGGGTFDVSVLELFDGVMEVRASAGD 192
Query: 259 SEIGGRNIDKILAEYISTDFVKRYKIDPRT-NARAYIRLLSEIEKLKKQMSANSNKLPLN 317
+ +GG + + LAE F+K++ +D + RLL E+ K+ + S++
Sbjct: 193 NYLGGEDFTRALAEA----FLKKHGLDFEKLDPSELARLLRAAERAKRAL---SDQEEAE 245
Query: 318 IECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRI 377
+ ++ +++ L R + E +C+ + R+ + + + +++L + I I +VGG++R+
Sbjct: 246 MSVRIEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRM 305
Query: 378 PAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCA 411
P + ++ +F + P LN DE V+ G A+Q
Sbjct: 306 PVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQAG 339
Score = 60.2 bits (147), Expect = 2e-09
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 4 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTVTNVKN 62
IGID GT + ++V + G I N TPS V+ + IL G AA+ + +T+
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 63 TIFGFKRLLG--RTY---DDPFVQEELKSMPFQSLKQ 94
T FKR +G + Y F EEL S+ +SLK+
Sbjct: 61 TAASFKRFMGTDKKYRLGKREFRAEELSSLVLRSLKE 97
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 224 bits (572), Expect = 1e-61
Identities = 147/498 (29%), Positives = 260/498 (52%), Gaps = 29/498 (5%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFS-DKNRILGVAAKNQTVTNVK 620
++GID GT + ++V + G I N +R+TPS V F+ D ++G A+ Q V N +
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQ 63
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT + KR +GR YD+ + E K +P+ + G++ IK L +E F+PE+L+AM+
Sbjct: 64 NTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPRLERE--FAPEELSAMI 119
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
KL D + + V V+ VP+YF +++R+A A IAGL V R++NE TA ALAY
Sbjct: 120 LRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAY 179
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
G+ D + + V D G V + G +V + D+++GG + DK +
Sbjct: 180 GL-------DRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIV 232
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFM---DDKDVH 857
++++ F+++ ID R + +A RL EK K ++S S +++ F+ +D H
Sbjct: 233 DWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS-VTDISLP-FITATEDGPKH 290
Query: 858 AE--LKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIES 915
E L R E+LC + R+ + + + ++ L I + +VGGS+R+P + ++ +
Sbjct: 291 IETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRT 350
Query: 916 VFHKPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVTDVQNYPIKVAWNPVGGEDGE 974
+ + P+ +N DE V+ G A+Q IL+ +K + DVT P+ + +GG +
Sbjct: 351 LIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVT-----PLSLGLETIGGVMKK 405
Query: 975 NLAFSSTQPVPFTKVLTFYRANVFDVQAYY---DCPVPYPTQFVGQFIIKDIKPGPKGKP 1031
+ ++T PV + V + N V+ + + + + +G+F + I P P+G P
Sbjct: 406 LIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVP 465
Query: 1032 QKVKVKMTVNVHGVFSVT 1049
Q V+V ++ +G+ V+
Sbjct: 466 Q-VQVAFDIDANGILQVS 482
Score = 209 bits (533), Expect = 1e-56
Identities = 131/446 (29%), Positives = 221/446 (49%), Gaps = 55/446 (12%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFS-DKNRILGVAAKNQTVTNVK 61
++GID GT + ++V + G I N +R+TPS V F+ D ++G A+ Q V N +
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQ 63
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT + KR +GR YD EL E K +P+
Sbjct: 64 NTFYNLKRFIGRRYD------ELD--------------------------PESKRVPYTI 91
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
+ G++ IK L +E F+PE+L+AM+ KL D + + V V+ VP+YF ++
Sbjct: 92 RRNEQGNVRIKCPRLERE--FAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDS 149
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A A IAGL V R++NE TA ALAYG+ D + + V D G V
Sbjct: 150 QRQATRDAGRIAGLEVERILNEPTAAALAYGL-------DRSSSQTVLVFDLGGGTFDVS 202
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
+ G +V + D+++GG + DK + ++++ F+++ ID R + +A RL E
Sbjct: 203 LLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAE 262
Query: 302 KLKKQMSANSNKLPLNIECFM---DDKDVHAE--LKRNDLETLCEHIFGRIEICLNKCIA 356
K K ++S S +++ F+ +D H E L R E+LC + R+ + + +
Sbjct: 263 KAKIELSGVS-VTDISLP-FITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALK 320
Query: 357 ESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPA 416
++ L I + +VGGS+R+P + ++ ++ + P+ +N DE V+ G A+Q IL+
Sbjct: 321 DAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE 380
Query: 417 VK-IRHFDVTDVQNYPIKVAWNPVGG 441
+K + DVT P+ + +GG
Sbjct: 381 LKDLLLLDVT-----PLSLGLETIGG 401
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional.
Length = 657
Score = 221 bits (565), Expect = 5e-61
Identities = 142/511 (27%), Positives = 257/511 (50%), Gaps = 29/511 (5%)
Query: 550 FSRYHNVQIIMSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGV 609
+R+ + ++ VIG+D GT ++ + N R+TPS VAF +++G+
Sbjct: 17 LARHESQKVQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGL 76
Query: 610 AAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEH 669
AAK Q +TN ++T + KRL+GR ++D +Q+++K++P++ ++ +G ++ N +
Sbjct: 77 AAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDG--NGKQ 134
Query: 670 VFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRL 729
+SP Q+ A + K+K+ +EN + +KV + V+ P+YF + +R+A A +IAGLNV+R+
Sbjct: 135 -YSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRV 193
Query: 730 INETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSE 789
+NE TA ALAYG+ D +A D G + + G +V + D+
Sbjct: 194 VNEPTAAALAYGM-------DKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTH 246
Query: 790 IGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIEC 849
+GG + D L++YI +F K ID A R+ EK K ++S+ + + +N+
Sbjct: 247 LGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSS-AMETEVNLPF 305
Query: 850 FMDDKD----VHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSR 905
+ D + + R+ E + + + R +C+ ++ + + I+ + +VGG +R
Sbjct: 306 ITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTR 365
Query: 906 IPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVTDVQNYPIKVA 964
+P ++ F K P +N DEAV+ G A +L VK + DVT P+ +
Sbjct: 366 MPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVT-----PLSLG 420
Query: 965 WNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDC-----PVPYPTQFVGQFI 1019
+GG + ++T +P K TF A Q + Q +GQF
Sbjct: 421 IETLGGVFTRMIPKNTT--IPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFD 478
Query: 1020 IKDIKPGPKGKPQKVKVKMTVNVHGVFSVTS 1050
+ I P P+G PQ ++V ++ +G+ VT+
Sbjct: 479 LVGIPPAPRGVPQ-IEVTFDIDANGICHVTA 508
Score = 194 bits (495), Expect = 5e-52
Identities = 131/469 (27%), Positives = 230/469 (49%), Gaps = 53/469 (11%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 62
VIG+D GT ++ + N R+TPS VAF +++G+AAK Q +TN ++
Sbjct: 29 VIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQS 88
Query: 63 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSL 122
T + KRL+GR ++D +Q+++K++P++ ++ +G D +VQ
Sbjct: 89 TFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNG---------DAWVQ----------- 128
Query: 123 KQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNE 182
DG+ K+ +SP Q+ A + K+K+ +EN + +KV + V+ P+YF + +
Sbjct: 129 ---DGN--------GKQ--YSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQ 175
Query: 183 RKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCI 242
R+A A +IAGLNV+R++NE TA ALAYG+ D +A D G + +
Sbjct: 176 RQATKDAGTIAGLNVIRVVNEPTAAALAYGM-------DKTKDSLIAVYDLGGGTFDISV 228
Query: 243 AAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEK 302
G +V + D+ +GG + D L++YI +F K ID A R+ EK
Sbjct: 229 LEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEK 288
Query: 303 LKKQMSANSNKLPLNIECFMDDKD----VHAELKRNDLETLCEHIFGRIEICLNKCIAES 358
K ++S+ + + +N+ + D + + R+ E + + + R +C+ ++
Sbjct: 289 AKCELSS-AMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDA 347
Query: 359 KLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVK 418
+ + I+ + +VGG +R+P ++ F K P +N DEAV+ G A +L VK
Sbjct: 348 GVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVK 407
Query: 419 -IRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRA 466
+ DVT P+ + +GG + ++T +P K TF A
Sbjct: 408 GLVLLDVT-----PLSLGIETLGGVFTRMIPKNTT--IPTKKSQTFSTA 449
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 198 bits (505), Expect = 7e-56
Identities = 110/379 (29%), Positives = 184/379 (48%), Gaps = 29/379 (7%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRST-PSCVAFSDKNRILGVAAKNQTVTNVK 620
IGID GT + ++ SG ++ + D + R PS V + D +G A +++ K
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKIL-PDENGRVLLPSVVHYGDGGISVGHDALKLAISDPK 60
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NTI KRL+G++ +D ++ +N G I +P +++A +
Sbjct: 61 NTISSVKRLMGKSIEDI---KKSFPYLPILEGKNGGIILFHTQQGTV----TPVEVSAEI 113
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
LK+ +E + ++ V+ VP+YF + +R+A AA +AGLNVLRL+NE TA ALAY
Sbjct: 114 LKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAY 173
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
G+ D + A D G V I KG +VL+ DS +GG + D++LA
Sbjct: 174 GL-------DKKKEGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLA 226
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAEL 860
E + +K+Y + + LL K K+ +S + ++ + + F +
Sbjct: 227 ELL----LKKYGLKSLISDEDQAELLLIARKAKEALS-GAEEVEVRGQDFK------CTI 275
Query: 861 KRNDLETLCEHIFGR-IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHK 919
R + E L + + + + IC + + ++ L V I + +VGGS+RIP + + F +
Sbjct: 276 TREEFEKLIDPLVKKTLNIC-KQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQ 334
Query: 920 PPSTTLNQDEAVSRGCALQ 938
P +N DE V+ G ALQ
Sbjct: 335 KPLCDINPDEVVAIGAALQ 353
Score = 190 bits (486), Expect = 2e-53
Identities = 109/409 (26%), Positives = 187/409 (45%), Gaps = 59/409 (14%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRST-PSCVAFSDKNRILGVAAKNQTVTNVK 61
IGID GT + ++ SG ++ + D + R PS V + D +G A +++ K
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKIL-PDENGRVLLPSVVHYGDGGISVGHDALKLAISDPK 60
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NTI KRL+G++ +D + P ++ + +
Sbjct: 61 NTISSVKRLMGKSIEDI---------------KKSFPYL-------PILEGKNGGIIL-- 96
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
G++ +P +++A + LK+ +E + ++ V+ VP+YF +
Sbjct: 97 FHTQQGTV-------------TPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDA 143
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A AA +AGLNVLRL+NE TA ALAYG+ D + A D G V
Sbjct: 144 QRQATKDAARLAGLNVLRLLNEPTAAALAYGL-------DKKKEGIYAVYDLGGGTFDVS 196
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
I KG +VL+ DS +GG + D++LAE + +K+Y + + LL
Sbjct: 197 ILKLHKGVFEVLATGGDSALGGDDFDQLLAELL----LKKYGLKSLISDEDQAELLLIAR 252
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGR-IEICLNKCIAESKL 360
K K+ +S + ++ + + F + R + E L + + + + IC + + ++ L
Sbjct: 253 KAKEALS-GAEEVEVRGQDFK------CTITREEFEKLIDPLVKKTLNIC-KQALRDAGL 304
Query: 361 PVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409
V I + +VGGS+RIP + + F + P +N DE V+ G ALQ
Sbjct: 305 SVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDEVVAIGAALQ 353
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 186 bits (474), Expect = 3e-51
Identities = 115/387 (29%), Positives = 194/387 (50%), Gaps = 13/387 (3%)
Query: 562 VIGIDFGTESCYLSV--AKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNV 619
+IGID GT + V A +G + I ++ +S PS VAF+ ++G A Q N
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNP 81
Query: 620 KNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAM 679
+NTI+ KR +G+ + ++ E F+ + N+ +PE++ +
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSR 141
Query: 680 LFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALA 739
L KL+ ++E + V V++VP+ F +R A + AA++AGL VLR+INE TA ALA
Sbjct: 142 LILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 740 YGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799
YG++K+ Q+ V VD G L V + G + ++ +GG++ ++ L
Sbjct: 202 YGLHKK------QDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRL 255
Query: 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMS-ANSNKLPLNIECFMDDKDV-- 856
+Y+ ++Y P N RL +E K ++ S + LN+ + + +
Sbjct: 256 LQYLYQKIYEKYGKVP-DNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVK 314
Query: 857 -HAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIES 915
EL R++ ETL E +F +I + + +AE L + I +VGGS+RIP + VI
Sbjct: 315 FEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGR 374
Query: 916 VFHKPPSTTLNQDEAVSRGCALQCAIL 942
F K P+T+++ + AV G A+Q I+
Sbjct: 375 FFGKDPNTSVDPELAVVTGVAIQAGII 401
Score = 177 bits (451), Expect = 4e-48
Identities = 118/417 (28%), Positives = 195/417 (46%), Gaps = 43/417 (10%)
Query: 3 VIGIDFGTESCYLSV--AKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNV 60
+IGID GT + V A +G + I ++ +S PS VAF+ ++G A Q N
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNP 81
Query: 61 KNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQ 120
+NTI+ KR +G+ + ++ E F F
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRF------------------KVKINSRNGAFFF 123
Query: 121 SLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTN 180
S+ N K +PE++ + L KL+ ++E + V V++VP+ F
Sbjct: 124 SVLTN----ETKT--------VTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDE 171
Query: 181 NERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240
+R A + AA++AGL VLR+INE TA ALAYG++K+ Q+ V VD G L V
Sbjct: 172 KQRNATVKAANLAGLEVLRVINEPTAAALAYGLHKK------QDVFNVLVVDLGGGTLDV 225
Query: 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEI 300
+ G + ++ +GG++ ++ L +Y+ ++Y P N RL +
Sbjct: 226 SLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQKIYEKYGKVP-DNKEDIQRLRQAV 284
Query: 301 EKLKKQMS-ANSNKLPLNIECFMDDKDV---HAELKRNDLETLCEHIFGRIEICLNKCIA 356
E K ++ S + LN+ + + + EL R++ ETL E +F +I + + +A
Sbjct: 285 EAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLA 344
Query: 357 ESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAIL 413
E L + I +VGGS+RIP + VI F K P+T+++ + AV G A+Q I+
Sbjct: 345 EGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGKDPNTSVDPELAVVTGVAIQAGII 401
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a separate
clade. The apparent function is to aid assembly of
iron-sulfur cluster proteins. Homologs from Buchnera and
Wolbachia are clearly in the same clade but are highly
derived and score lower than some examples of DnaK
[Protein fate, Protein folding and stabilization].
Length = 599
Score = 182 bits (465), Expect = 2e-48
Identities = 154/640 (24%), Positives = 282/640 (44%), Gaps = 68/640 (10%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRST-PSCVAFSDKNRIL-GVAAKNQTVTNV 619
+GID GT + ++ +SG E ++ D R PS V + + G A +
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPE-VLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDP 59
Query: 620 KNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAM 679
KNTI KRL+GR+ +D L P++ + + ++ +P +++A
Sbjct: 60 KNTISSVKRLMGRSIEDIKTFSIL---PYRFVDGPGEMVRLRTVQGTV----TPVEVSAE 112
Query: 680 LFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALA 739
+ KLK +E + + V+ VP+YF + +R+A AA +AGLNVLRL+NE TA A+A
Sbjct: 113 ILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVA 172
Query: 740 YGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKIL 799
YG+ D + A D G V I KG +VL+ DS +GG + D L
Sbjct: 173 YGL-------DKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHAL 225
Query: 800 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAE 859
A++I +K+ I N LL K+ ++ + ++ +D KD +
Sbjct: 226 AKWI----LKQLGISADLNPEDQRLLLQAARAAKEALTDAE-SVEVDFT--LDGKDFKGK 278
Query: 860 LKRNDLETLCEHIFGR-IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH 918
L R++ E L + + + + IC + + ++ L V I + +VGGS+R+P + + +F
Sbjct: 279 LTRDEFEALIQPLVQKTLSIC-RRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG 337
Query: 919 KPPSTTLNQDEAVSRGCALQCAILS-PAVKIRH--FDVTDVQNYPIKVAWNPVGGEDGEN 975
+ P T ++ D+ V+ G A+Q +L+ + DVT P+ + +GG E
Sbjct: 338 QEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVT-----PLSLGIETMGGL-VEK 391
Query: 976 LAF-SSTQPVPFTKVLTFYRAN-----VFDVQA----YYDCPVPYPTQFVGQFIIKDIKP 1025
+ ++ PV + T Y+ + VQ DC + + +F ++ I P
Sbjct: 392 IIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDC------RSLARFELRGIPP 445
Query: 1026 GPKGKPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHY-LANIKVH 1084
G +++V V+ G+ +V++ +E + V Y L++ ++
Sbjct: 446 MVAGA-ARIRVTFQVDADGLLTVSAQEQSTGVEQSIQ----------VKPSYGLSDEEIE 494
Query: 1085 DLFELECKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDET 1144
+ + K + D + + K E + L+ LA D D +++ R ++ ++
Sbjct: 495 RMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADG-DLLSEDERAAIDAAMEAL 553
Query: 1145 ENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAMR 1184
+ L +G D + + +L D R M+ +R
Sbjct: 554 QKAL--QGDDADA--IKAAIEALEEATDNFAARRMDRGIR 589
Score = 169 bits (430), Expect = 6e-44
Identities = 108/410 (26%), Positives = 184/410 (44%), Gaps = 56/410 (13%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRST-PSCVAFSDKNRIL-GVAAKNQTVTNV 60
+GID GT + ++ +SG E ++ D R PS V + + G A +
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPE-VLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDP 59
Query: 61 KNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQ 120
KNTI KRL+GR+ +D L P++
Sbjct: 60 KNTISSVKRLMGRSIEDIKTFSIL---------------------------------PYR 86
Query: 121 SLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTN 180
+ + ++ +P +++A + KLK +E + + V+ VP+YF +
Sbjct: 87 FVDGPGEMVRLRTVQGTV----TPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDD 142
Query: 181 NERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQV 240
+R+A AA +AGLNVLRL+NE TA A+AYG+ D + A D G V
Sbjct: 143 AQRQATKDAARLAGLNVLRLLNEPTAAAVAYGL-------DKASEGIYAVYDLGGGTFDV 195
Query: 241 CIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEI 300
I KG +VL+ DS +GG + D LA++I +K+ I N LL
Sbjct: 196 SILKLTKGVFEVLATGGDSALGGDDFDHALAKWI----LKQLGISADLNPEDQRLLLQAA 251
Query: 301 EKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGR-IEICLNKCIAESK 359
K+ ++ + ++ +D KD +L R++ E L + + + + IC + + ++
Sbjct: 252 RAAKEALTDAE-SVEVDFT--LDGKDFKGKLTRDEFEALIQPLVQKTLSIC-RRALRDAG 307
Query: 360 LPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409
L V I + +VGGS+R+P + + +F + P T ++ D+ V+ G A+Q
Sbjct: 308 LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQ 357
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 165 bits (421), Expect = 2e-42
Identities = 102/381 (26%), Positives = 185/381 (48%), Gaps = 26/381 (6%)
Query: 563 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNT 622
+GID GT + ++ +SG E + ++ PS V + + +G A+ + KNT
Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNT 81
Query: 623 IFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFT 682
I KR +GR+ D +Q+ +P+Q + +G I+ K SP +++A +
Sbjct: 82 ISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQGLK----SPVEVSAEILK 135
Query: 683 KLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGI 742
L+ +E + ++ V+ VP+YF + +R+A AA +AGLNVLRL+NE TA A+AYG+
Sbjct: 136 ALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGL 195
Query: 743 YKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEY 802
D +A D G + I KG +VL+ DS +GG + D +LA++
Sbjct: 196 -------DSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADW 248
Query: 803 ISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKR 862
I +++ + PR + LL K+ +S + + + + E+ R
Sbjct: 249 I----LEQAGLSPRLDPEDQRLLLDAARAAKEALSDADS---VEVSVALWQ----GEITR 297
Query: 863 NDLETLCEHIFGR-IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPP 921
L + R + C + + ++ + + + + +VGGS+R+P + + F + P
Sbjct: 298 EQFNALIAPLVKRTLLAC-RRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTP 356
Query: 922 STTLNQDEAVSRGCALQCAIL 942
T+++ D+ V+ G A+Q IL
Sbjct: 357 LTSIDPDKVVAIGAAIQADIL 377
Score = 156 bits (397), Expect = 2e-39
Identities = 103/411 (25%), Positives = 188/411 (45%), Gaps = 56/411 (13%)
Query: 4 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNT 63
+GID GT + ++ +SG E + ++ PS V + + +G A+ + KNT
Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNT 81
Query: 64 IFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLK 123
I KR +GR+ D +Q+ +P+Q + +G MP ++
Sbjct: 82 ISSVKRFMGRSLAD--IQQRYPHLPYQFVASENG-------------------MPL--IR 118
Query: 124 QNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNER 183
G + SP +++A + L+ +E + ++ V+ VP+YF + +R
Sbjct: 119 TAQG-------------LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQR 165
Query: 184 KALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIA 243
+A AA +AGLNVLRL+NE TA A+AYG+ D +A D G + I
Sbjct: 166 QATKDAARLAGLNVLRLLNEPTAAAIAYGL-------DSGQEGVIAVYDLGGGTFDISIL 218
Query: 244 AFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKL 303
KG +VL+ DS +GG + D +LA++I +++ + PR + LL
Sbjct: 219 RLSKGVFEVLATGGDSALGGDDFDHLLADWI----LEQAGLSPRLDPEDQRLLLDAARAA 274
Query: 304 KKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGR-IEICLNKCIAESKLPV 362
K+ +S + + + + E+ R L + R + C + + ++ +
Sbjct: 275 KEALSDADS---VEVSVALWQ----GEITREQFNALIAPLVKRTLLAC-RRALRDAGVEA 326
Query: 363 NAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAIL 413
+ + + +VGGS+R+P + + F + P T+++ D+ V+ G A+Q IL
Sbjct: 327 DEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADIL 377
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 147 bits (372), Expect = 1e-36
Identities = 122/499 (24%), Positives = 222/499 (44%), Gaps = 66/499 (13%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 621
+GIDFGT + +++A + ++ I + P+ + F+ N +G N+ + ++K
Sbjct: 21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIG---NNKGLRSIK- 76
Query: 622 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLF 681
RL G+T + L S+ L N S +K+N+ NK+ ++ A +F
Sbjct: 77 ------RLFGKTLKEILNTPALFSLVKDYLDVN--SSELKLNFANKQ--LRIPEIAAEIF 126
Query: 682 TKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYG 741
LK+ +E +++ + V+ VP++F + R ++ AA IAG VLRLI E TA A AYG
Sbjct: 127 IYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYG 186
Query: 742 IYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAE 801
+ K +Q Y+ + D G V I +G +V++ D+ +GG +ID ++ +
Sbjct: 187 LNK------NQKGCYLVY-DLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQ 239
Query: 802 YISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELK 861
Y+ F ID A+ E L + S N++ + +N
Sbjct: 240 YLCNKFDLPNSIDTLQLAK------KAKETLTYKDSFNNDNISIN--------------- 278
Query: 862 RNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPP 921
+ LE L + R +C+ ++ P I + +VGG++RIP K+ + F
Sbjct: 279 KQTLEQLILPLVERTINIAQECLEQAGNP--NIDGVILVGGATRIPLIKDELYKAFKVDI 336
Query: 922 STTLNQDEAVSRGCALQCA-ILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAFSS 980
+ ++ D+AV G ALQ +++P DV P+ + GG + + ++
Sbjct: 337 LSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVV-----PLSLGMELYGGIVEKIIMRNT 391
Query: 981 TQPVPFTKVLTFYRANVFDVQAYY---------DCPVPYPTQFVGQFIIKDIKPGPKGKP 1031
P+ K T Y N +Q + DC + + +F +K + P G
Sbjct: 392 PIPISVVKEFTTYADNQTGIQFHILQGEREMAADC------RSLARFELKGLPPMKAGS- 444
Query: 1032 QKVKVKMTVNVHGVFSVTS 1050
+ +V ++ G+ SV++
Sbjct: 445 IRAEVTFAIDADGILSVSA 463
Score = 131 bits (332), Expect = 1e-31
Identities = 101/407 (24%), Positives = 178/407 (43%), Gaps = 74/407 (18%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 62
+GIDFGT + +++A + ++ I + P+ + F+ N +G N+ + ++K
Sbjct: 21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIG---NNKGLRSIK- 76
Query: 63 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSL 122
RL G+T E + P + +K L
Sbjct: 77 ------RLFGKTLK--------------------------EILNTPALFSLVKDY----L 100
Query: 123 KQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNE 182
N S +K+N+ NK+ ++ A +F LK+ +E +++ + V+ VP++F +
Sbjct: 101 DVN--SSELKLNFANKQ--LRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAA 156
Query: 183 RKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCI 242
R ++ AA IAG VLRLI E TA A AYG+ K +Q Y+ + D G V I
Sbjct: 157 RGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK------NQKGCYLVY-DLGGGTFDVSI 209
Query: 243 AAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEK 302
+G +V++ D+ +GG +ID ++ +Y+ F ID A+ E
Sbjct: 210 LNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAK------KAKET 263
Query: 303 LKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPV 362
L + S N++ + +N + LE L + R +C+ ++ P
Sbjct: 264 LTYKDSFNNDNISIN---------------KQTLEQLILPLVERTINIAQECLEQAGNP- 307
Query: 363 NAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409
I + +VGG++RIP K+ + F + ++ D+AV G ALQ
Sbjct: 308 -NIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQ 353
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 48.3 bits (116), Expect = 2e-05
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 295 RLLSEIEKLKKQMS-ANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNK 353
RL +E K +S + ++ L+ + + A + R + E RIE +++
Sbjct: 302 RLARAVEAAKIALSSQDETRIDLDF----VEVGLEAPVTRAEFEGAIAPDLERIEAAVDE 357
Query: 354 CIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCAL 408
+A++ + +AI + + GGSS +PA + + F + +V+ G AL
Sbjct: 358 ALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFPAARIVEGDAFGSVASGLAL 412
Score = 48.3 bits (116), Expect = 2e-05
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 824 RLLSEIEKLKKQMS-ANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNK 882
RL +E K +S + ++ L+ + + A + R + E RIE +++
Sbjct: 302 RLARAVEAAKIALSSQDETRIDLDF----VEVGLEAPVTRAEFEGAIAPDLERIEAAVDE 357
Query: 883 CIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCAL 937
+A++ + +AI + + GGSS +PA + + F + +V+ G AL
Sbjct: 358 ALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFPAARIVEGDAFGSVASGLAL 412
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 43.2 bits (103), Expect = 5e-04
Identities = 93/399 (23%), Positives = 145/399 (36%), Gaps = 111/399 (27%)
Query: 563 IGIDFGTES--CYLSVAKSGGIETIVNDYSLRSTPSCVAFSDK-NRIL--GVAAKNQTVT 617
IGID GT + Y+ K GI ++N+ PS VA K +IL G AK
Sbjct: 1 IGIDLGTANTLVYV---KGKGI--VLNE------PSVVAIDTKTGKILAVGEEAK----- 44
Query: 618 NVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLT 677
+LGRT + V P + DG I ++ E
Sbjct: 45 ----------EMLGRTPGNIEV-----IRPLK-----DGVI---ADFEATE--------- 72
Query: 678 AMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATA 737
AML +K + + + V+ VPS T ER+A++ AA AG + LI E A A
Sbjct: 73 AMLRYFIKKVKGRSLFFR-PRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAA 131
Query: 738 LAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDK 797
+ G+ D P+ VD G ++ + + G + V+S +GG + D+
Sbjct: 132 IGAGL-------DIFEPKGNMVVDIGGGTTEIAVISL--GGI-VVSKSIR--VGGDDFDE 179
Query: 798 ILAEYISTDFVKRYK--IDPRTNARAYIRLLSEIEKLKKQM-SANSNK------------ 842
+ Y+ ++Y I RT E++K ++ SA
Sbjct: 180 AIIRYVR----RKYNLLIGERT-----------AEEIKIEIGSAYPLDEEETMEVKGRDL 224
Query: 843 ---LPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAI--HSI 897
LP +E V +E R L+ + I I+ L K E I I
Sbjct: 225 VTGLPRTVE-------VTSEEVREALKEPLDEIVEAIKSVLEKTPPE---LAADILDRGI 274
Query: 898 EIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCA 936
+ GG + + +I P + V++G
Sbjct: 275 VLTGGGALLRGLDELISEETGLPVRVAEDPLTCVAKGAG 313
Score = 37.0 bits (87), Expect = 0.047
Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 57/257 (22%)
Query: 171 VLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAF 230
V+ VPS T ER+A++ AA AG + LI E A A+ G+ D P+
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGL-------DIFEPKGNMV 146
Query: 231 VDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYK--IDPRT 288
VD G ++ + + G + V+S +GG + D+ + Y+ ++Y I RT
Sbjct: 147 VDIGGGTTEIAVISL--GGI-VVSKSIR--VGGDDFDEAIIRYVR----RKYNLLIGERT 197
Query: 289 NARAYIRLLSEIEKLKKQM-SANSNK---------------LPLNIECFMDDKDVHAELK 332
E++K ++ SA LP +E V +E
Sbjct: 198 -----------AEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTVE-------VTSEEV 239
Query: 333 RNDLETLCEHIFGRIEICLNKCIAESKLPVNAI--HSIEIVGGSSRIPAFKNVIESVFHK 390
R L+ + I I+ L K E I I + GG + + +I
Sbjct: 240 REALKEPLDEIVEAIKSVLEKTPPE---LAADILDRGIVLTGGGALLRGLDELISEETGL 296
Query: 391 PPSTTLNQDEAVSRGCA 407
P + V++G
Sbjct: 297 PVRVAEDPLTCVAKGAG 313
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 40.3 bits (95), Expect = 0.007
Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 48/246 (19%)
Query: 153 TKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYG 212
+S ++ +VH V+ P N K + AGL V + LA
Sbjct: 143 KDPLGMSGVRLEVEVH--VITGPKNILENLEKCV----ERAGLKVDNI----VLEPLASA 192
Query: 213 IYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAE 272
+ L ED++ VA +D G IA + G L+ + +GG ++ K +A+
Sbjct: 193 LAV--LTEDEKE-LGVALIDIGGGTTD--IAIYKNGALRYTGVI---PVGGDHVTKDIAK 244
Query: 273 YISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQM---SANSNKLPLNIECFMDDKDVHA 329
+ T F E E++K + + IE D+
Sbjct: 245 GLKTPFE-------------------EAERIKIKYGSALISLADDEETIEVPSVGSDIPR 285
Query: 330 ELKRNDL----ETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIE 385
++ R++L E E I ++ L K + LP + + GG +++P + E
Sbjct: 286 QVTRSELSEIIEARVEEILELVKAELRKSGLPNHLP----GGVVLTGGGAQLPGIVELAE 341
Query: 386 SVFHKP 391
+F +P
Sbjct: 342 RIFGRP 347
Score = 40.3 bits (95), Expect = 0.007
Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 48/246 (19%)
Query: 682 TKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYG 741
+S ++ +VH V+ P N K + AGL V + LA
Sbjct: 143 KDPLGMSGVRLEVEVH--VITGPKNILENLEKCV----ERAGLKVDNI----VLEPLASA 192
Query: 742 IYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAE 801
+ L ED++ VA +D G IA + G L+ + +GG ++ K +A+
Sbjct: 193 LAV--LTEDEKE-LGVALIDIGGGTTD--IAIYKNGALRYTGVI---PVGGDHVTKDIAK 244
Query: 802 YISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQM---SANSNKLPLNIECFMDDKDVHA 858
+ T F E E++K + + IE D+
Sbjct: 245 GLKTPFE-------------------EAERIKIKYGSALISLADDEETIEVPSVGSDIPR 285
Query: 859 ELKRNDL----ETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIE 914
++ R++L E E I ++ L K + LP + + GG +++P + E
Sbjct: 286 QVTRSELSEIIEARVEEILELVKAELRKSGLPNHLP----GGVVLTGGGAQLPGIVELAE 341
Query: 915 SVFHKP 920
+F +P
Sbjct: 342 RIFGRP 347
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 36.8 bits (85), Expect = 0.060
Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 28/188 (14%)
Query: 171 VLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAF 230
V+ PS T ER+A+ A G + LI E A A+ DLP D+ P
Sbjct: 102 VVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIG-----ADLPVDE--PVANVV 154
Query: 231 VDFGYSALQVCIAAFVKGKLKVLSNVCDS-EIGGRNIDKILAEYISTDFVKRYK--IDPR 287
VD G +V I +F V+S C S IGG +D+ + ++ K+Y I R
Sbjct: 155 VDIGGGTTEVAIISFG----GVVS--CHSIRIGGDQLDEDIVSFVR----KKYNLLIGER 204
Query: 288 TNARAYIRL-LSEIEKLKKQMSANS----NKLPLNIECFMDDKDVHAELKRNDLETLCEH 342
T + + + + IE + M LP I ++ K++ ++ + L L E
Sbjct: 205 TAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTIT--LESKEIQGAMRESLLHIL-EA 261
Query: 343 IFGRIEIC 350
I +E C
Sbjct: 262 IRATLEDC 269
Score = 36.8 bits (85), Expect = 0.060
Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 28/188 (14%)
Query: 700 VLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAF 759
V+ PS T ER+A+ A G + LI E A A+ DLP D+ P
Sbjct: 102 VVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIG-----ADLPVDE--PVANVV 154
Query: 760 VDFGYSALQVCIAAFVKGKLKVLSNVCDS-EIGGRNIDKILAEYISTDFVKRYK--IDPR 816
VD G +V I +F V+S C S IGG +D+ + ++ K+Y I R
Sbjct: 155 VDIGGGTTEVAIISFG----GVVS--CHSIRIGGDQLDEDIVSFVR----KKYNLLIGER 204
Query: 817 TNARAYIRL-LSEIEKLKKQMSANS----NKLPLNIECFMDDKDVHAELKRNDLETLCEH 871
T + + + + IE + M LP I ++ K++ ++ + L L E
Sbjct: 205 TAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTIT--LESKEIQGAMRESLLHIL-EA 261
Query: 872 IFGRIEIC 879
I +E C
Sbjct: 262 IRATLEDC 269
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 33.9 bits (78), Expect = 0.58
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 367 SIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCAL 408
I ++GG SR + + SV K P L++ E V+ G AL
Sbjct: 388 RIVVIGGGSRNKLWLQLKASVLGK-PIEVLDEAELVALGAAL 428
Score = 33.9 bits (78), Expect = 0.58
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 896 SIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCAL 937
I ++GG SR + + SV K P L++ E V+ G AL
Sbjct: 388 RIVVIGGGSRNKLWLQLKASVLGK-PIEVLDEAELVALGAAL 428
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 32.7 bits (75), Expect = 1.6
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 368 IEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCA 411
I ++GG ++ PA++ +I + + + +EA + G A+Q A
Sbjct: 398 IRLIGGGAKSPAWRQIIADIMNAE-VVVPDTEEAAALGAAIQAA 440
Score = 32.7 bits (75), Expect = 1.6
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 897 IEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCA 940
I ++GG ++ PA++ +I + + + +EA + G A+Q A
Sbjct: 398 IRLIGGGAKSPAWRQIIADIMNAE-VVVPDTEEAAALGAAIQAA 440
>gnl|CDD|225471 COG2919, COG2919, Septum formation initiator [Cell division and
chromosome partitioning].
Length = 117
Score = 30.8 bits (70), Expect = 1.7
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 292 AYIRLLSEIEKLKKQM---SANSNKLPLNIECFMDDKDVHAELKRNDL 336
++L +I + ++ SA + L I+ D +D E R++L
Sbjct: 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSEL 98
Score = 30.8 bits (70), Expect = 1.7
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 821 AYIRLLSEIEKLKKQM---SANSNKLPLNIECFMDDKDVHAELKRNDL 865
++L +I + ++ SA + L I+ D +D E R++L
Sbjct: 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSEL 98
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 31.4 bits (71), Expect = 2.0
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 25/122 (20%)
Query: 165 NKVHDCVLAVP----------SYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIY 214
+++ + P N L A G + ++N+ A ALA G++
Sbjct: 60 SEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF 119
Query: 215 KQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYI 274
+++ V VD G + I GK V + I + LA +
Sbjct: 120 G----KEEDT---VLVVDLGTGTTGIAI--VEDGKGGVGAAGEL------GIAEALAAVL 164
Query: 275 ST 276
+
Sbjct: 165 NL 166
Score = 31.4 bits (71), Expect = 2.0
Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 25/122 (20%)
Query: 694 NKVHDCVLAVP----------SYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIY 743
+++ + P N L A G + ++N+ A ALA G++
Sbjct: 60 SEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF 119
Query: 744 KQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYI 803
+++ V VD G + I GK V + I + LA +
Sbjct: 120 G----KEEDT---VLVVDLGTGTTGIAI--VEDGKGGVGAAGEL------GIAEALAAVL 164
Query: 804 ST 805
+
Sbjct: 165 NL 166
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 31.8 bits (72), Expect = 2.4
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 19/152 (12%)
Query: 154 KLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGI 213
+LKD E ++ + A+P + + + AGL VL +++E TA A +
Sbjct: 80 RLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL 139
Query: 214 YKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEY 273
DD VD G I+ KGK + D GG ++ +LA
Sbjct: 140 -------DDG-----GVVDIGGGT--TGISIVKKGK---VIYSADEPTGGTHMTLVLAGN 182
Query: 274 --ISTDFVKRYKIDPRTNARAYIRLLSEIEKL 303
IS + ++YK + + + EK+
Sbjct: 183 YGISLEEAEQYKRGHKKGEEIFPVVKPVYEKM 214
Score = 31.8 bits (72), Expect = 2.4
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 19/152 (12%)
Query: 683 KLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGI 742
+LKD E ++ + A+P + + + AGL VL +++E TA A +
Sbjct: 80 RLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL 139
Query: 743 YKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEY 802
DD VD G I+ KGK + D GG ++ +LA
Sbjct: 140 -------DDG-----GVVDIGGGT--TGISIVKKGK---VIYSADEPTGGTHMTLVLAGN 182
Query: 803 --ISTDFVKRYKIDPRTNARAYIRLLSEIEKL 832
IS + ++YK + + + EK+
Sbjct: 183 YGISLEEAEQYKRGHKKGEEIFPVVKPVYEKM 214
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 31.6 bits (73), Expect = 2.6
Identities = 51/181 (28%), Positives = 71/181 (39%), Gaps = 46/181 (25%)
Query: 563 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAF-SDKNRILGVAAKNQTVTNVKN 621
IGID GT + + V K GI ++N+ PS VA + ++L V +
Sbjct: 11 IGIDLGTANTLVYV-KGKGI--VLNE------PSVVAIDTKTGKVLAVGEEA-------- 53
Query: 622 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLF 681
K +LGRT + LK DG I ++ E AML
Sbjct: 54 -----KEMLGRTPGNIEAIRPLK----------DGVI---ADF---------EATEAMLR 86
Query: 682 TKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYG 741
+K K V+ VPS T ER+A+ AA AG + LI E A A+ G
Sbjct: 87 YFIKKARGRRFFRK-PRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAG 145
Query: 742 I 742
+
Sbjct: 146 L 146
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in
eukaryotes and bacteria, YeiC-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 288
Score = 31.5 bits (72), Expect = 2.8
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 558 IIMSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVA 610
++S +G D ES L ++ G+ + RST S A DK+ L VA
Sbjct: 53 ALLSAVGDDSEGES-ILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVA 104
Score = 30.7 bits (70), Expect = 4.1
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVA 51
+S +G D ES L ++ G+ + RST S A DK+ L VA
Sbjct: 55 LSAVGDDSEGES-ILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVA 104
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit. The sequences of
ATP synthase F1 alpha and beta subunits are related and
both contain a nucleotide-binding site for ATP and ADP.
They have a common amino terminal domain but vary at the
C-terminus. The beta chain has catalytic activity, while
the alpha chain is a regulatory subunit. Proton
translocating ATP synthase, F1 beta subunit is
homologous to proton translocating ATP synthase
archaeal/vacuolar(V1), A subunit [Energy metabolism,
ATP-proton motive force interconversion].
Length = 461
Score = 31.6 bits (72), Expect = 2.9
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 552 RYHNVQIIMSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVA--FSDKNRILGV 609
RY +Q I++++G+D +E L+V ++ I+ + S P VA F+ G
Sbjct: 368 RYKELQDIIAILGMDELSEEDKLTVERARRIQRFL------SQPFFVAEVFT------GQ 415
Query: 610 AAKNQTVTNVKNTIFGFKRLLGRTYDD 636
K +K+TI GFK +L YD
Sbjct: 416 PGK---YVPLKDTIRGFKEILEGKYDH 439
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional.
Length = 120
Score = 29.7 bits (66), Expect = 4.6
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 539 VRQEDEKKRLMFSRYHNVQIIMSVIGIDFGTE 570
VR EDE+ ++ ++++ N ++S+ GID G E
Sbjct: 20 VRDEDERPKVAYNQFSNEIPVISIAGIDDGGE 51
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 29.7 bits (67), Expect = 5.4
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 1210 DRFSHLSKQDLSTVETAIKQHVKWIEEKVS----KLKSLPKHENPPITCDQIREEKYKFE 1265
+RFS + + L E +++Q +E +S KL S+P E+ +
Sbjct: 13 NRFSAVCESKLVEAERSLQQ----LETTLSLLEAKLASIPGLEDVTVQTTP--------P 60
Query: 1266 KSVWSVLNKPKPAPPAPNSTTPSEQSSE 1293
++ N P PP + S E
Sbjct: 61 PPASAITNGGPPPPPPARAEAASPPPPE 88
>gnl|CDD|215890 pfam00386, C1q, C1q domain. C1q is a subunit of the C1 enzyme
complex that activates the serum complement system.
Length = 125
Score = 29.2 bits (66), Expect = 5.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 445 ENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDCPVP 480
E+L + QPV F KVLT + + CPVP
Sbjct: 8 ESLPPPNQQPVVFDKVLTNIGGHYDPATGKFTCPVP 43
Score = 29.2 bits (66), Expect = 5.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 974 ENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDCPVP 1009
E+L + QPV F KVLT + + CPVP
Sbjct: 8 ESLPPPNQQPVVFDKVLTNIGGHYDPATGKFTCPVP 43
>gnl|CDD|179587 PRK03515, PRK03515, ornithine carbamoyltransferase subunit I;
Provisional.
Length = 336
Score = 30.5 bits (69), Expect = 7.0
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 620 KNTIFGFKRLLGRTYDD----PFVQEELKSMPFQSLKQNDGSIGIKV-NYLNKEHVFSPE 674
K +I R+LGR YD + QE ++++ + G+ V N L E F P
Sbjct: 87 KESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYA--------GVPVWNGLTNE--FHPT 136
Query: 675 QLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLI 730
QL A L T + E+ ++ LA NN +LL AA++ GL+ LRL+
Sbjct: 137 QLLADLLT----MQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLD-LRLV 187
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 30.1 bits (68), Expect = 7.2
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 171 VLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGI 213
V+ VPS T ER+A+ +A AG + LI E A A+ G+
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL 144
Score = 30.1 bits (68), Expect = 7.2
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 700 VLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGI 742
V+ VPS T ER+A+ +A AG + LI E A A+ G+
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL 144
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 30.1 bits (68), Expect = 7.4
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 19/152 (12%)
Query: 154 KLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGI 213
+LKD E ++ ++ A+P + K ++ AG+ VL +++E TA A I
Sbjct: 48 RLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQI 107
Query: 214 YKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEY 273
+ A VD G I+ KGK + D GG ++ +LA
Sbjct: 108 -------KNG-----AVVDVGGGT--TGISILKKGK---VIYSADEPTGGTHMSLVLAGA 150
Query: 274 ISTDF--VKRYKIDPRTNARAYIRLLSEIEKL 303
F + YK + + + +K+
Sbjct: 151 YGISFEEAEEYKRGHKDEEEIFPVVKPVYQKM 182
Score = 30.1 bits (68), Expect = 7.4
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 19/152 (12%)
Query: 683 KLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGI 742
+LKD E ++ ++ A+P + K ++ AG+ VL +++E TA A I
Sbjct: 48 RLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQI 107
Query: 743 YKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEY 802
+ A VD G I+ KGK + D GG ++ +LA
Sbjct: 108 -------KNG-----AVVDVGGGT--TGISILKKGK---VIYSADEPTGGTHMSLVLAGA 150
Query: 803 ISTDF--VKRYKIDPRTNARAYIRLLSEIEKL 832
F + YK + + + +K+
Sbjct: 151 YGISFEEAEEYKRGHKDEEEIFPVVKPVYQKM 182
>gnl|CDD|182632 PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR;
Provisional.
Length = 215
Score = 29.6 bits (67), Expect = 8.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 339 LCEHIFGRIEICLNKCIAESKLPVN 363
LC + RIE L CI +LP N
Sbjct: 133 LCLESYDRIEQTLKHCIEAKQLPAN 157
Score = 29.6 bits (67), Expect = 8.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 868 LCEHIFGRIEICLNKCIAESKLPVN 892
LC + RIE L CI +LP N
Sbjct: 133 LCLESYDRIEQTLKHCIEAKQLPAN 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 65,883,001
Number of extensions: 6568964
Number of successful extensions: 6253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6018
Number of HSP's successfully gapped: 136
Length of query: 1304
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1196
Effective length of database: 6,147,370
Effective search space: 7352254520
Effective search space used: 7352254520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (28.8 bits)