RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7140
(1304 letters)
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein
folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 629 bits (1625), Expect = 0.0
Identities = 234/669 (34%), Positives = 369/669 (55%), Gaps = 16/669 (2%)
Query: 560 MS-VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTN 618
MS G+D G + L+VA++ GI+ +VN+ S RSTPS V F KNR LG KN+ +N
Sbjct: 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSN 60
Query: 619 VKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTA 678
+KNT+ KR++G Y P ++E K + ++ +D G +V + ++HVFS QL A
Sbjct: 61 IKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAA 120
Query: 679 MLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATAL 738
M K+KD + + + + D +AVP ++T +R + AA IAGLN +R++N+ TA +
Sbjct: 121 MFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGV 180
Query: 739 AYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKI 798
+YGI+K DLPE ++ PR VAFVD G+S+ I AF KG+LKVL CD GGR+ D
Sbjct: 181 SYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLA 240
Query: 799 LAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHA 858
+ E+ + +F +YKID R N +AY R+L+ EKLKK +SAN+N P ++E M+D DV +
Sbjct: 241 ITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTN-APFSVESVMNDVDVSS 299
Query: 859 ELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH 918
+L R +LE L + + R+ + K +A++KL + +EI+GG++RIP K I F
Sbjct: 300 QLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFG 359
Query: 919 KPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWNPVGGEDGENLAF 978
KP STTLNQDEA+++G A CAI SP +++R F D+ Y + +W+ ++ F
Sbjct: 360 KPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVF 419
Query: 979 SSTQPVPFTKVLTFYRANVFDVQAYYDCP---VPYPTQFVGQFIIKDIKPGPKGKPQKVK 1035
+ P TK++T R F + A Y P + + + I ++ VK
Sbjct: 420 PAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQIANWEITGVQLPEGQDSVPVK 479
Query: 1036 VKMTVNVHGVFSVTSASMFEDL---EDQKEMFKCDLPYDSVFNHY--LANIKVHDLFELE 1090
+K+ + G+ ++ A ED+ D K + K DL + H L K+++L E E
Sbjct: 480 LKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLT---IVAHTFGLDAKKLNELIEKE 536
Query: 1091 CKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYE 1150
+M D+ + D KN LEEY+Y LR L + A F +D+ + L L++ E WLY+
Sbjct: 537 NEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYD 596
Query: 1151 EGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAFKGDD 1210
EG D ++ Y + L ++G+ ++ R + ++ S Q A + A K
Sbjct: 597 EGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEK---KQAIRSKQEASQMAAMAEKLAA 653
Query: 1211 RFSHLSKQD 1219
+ +++
Sbjct: 654 QRKAEAEKK 662
Score = 509 bits (1312), Expect = e-165
Identities = 180/476 (37%), Positives = 272/476 (57%), Gaps = 32/476 (6%)
Query: 1 MS-VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTN 59
MS G+D G + L+VA++ GI+ +VN+ S RSTPS V F KNR LG KN+ +N
Sbjct: 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSN 60
Query: 60 VKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPF 119
+KNT+ KR++G Y P ++E K +
Sbjct: 61 IKNTVANLKRIIGLDYHHPDFEQESK---------------HF---------------TS 90
Query: 120 QSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFT 179
+ ++ +D G +V + ++HVFS QL AM K+KD + + + + D +AVP ++T
Sbjct: 91 KLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYT 150
Query: 180 NNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQ 239
+R + AA IAGLN +R++N+ TA ++YGI+K DLPE ++ PR VAFVD G+S+
Sbjct: 151 EEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYT 210
Query: 240 VCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSE 299
I AF KG+LKVL CD GGR+ D + E+ + +F +YKID R N +AY R+L+
Sbjct: 211 CSIMAFKKGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTA 270
Query: 300 IEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESK 359
EKLKK +SAN+N P ++E M+D DV ++L R +LE L + + R+ + K +A++K
Sbjct: 271 AEKLKKVLSANTN-APFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAK 329
Query: 360 LPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKI 419
L + +EI+GG++RIP K I F KP STTLNQDEA+++G A CAI SP +++
Sbjct: 330 LSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRV 389
Query: 420 RHFDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYY 475
R F D+ Y + +W+ ++ F + P TK++T R F + A Y
Sbjct: 390 RPFKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFSMAASY 445
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 319 bits (820), Expect = 2e-98
Identities = 142/386 (36%), Positives = 221/386 (57%), Gaps = 8/386 (2%)
Query: 560 MSVIGIDFGTE-SCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTN 618
M IGID GT SC + V + G +E I ND R+TPS VAF+D R++G AAKNQ N
Sbjct: 23 MPAIGIDLGTTYSC-VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 81
Query: 619 VKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTA 678
NTIF KRL+GR ++D VQ ++K PF+ + G ++V Y + F PE++++
Sbjct: 82 PTNTIFDAKRLIGRKFEDATVQSDMKHWPFR-VVSEGGKPKVQVEYKGETKTFFPEEISS 140
Query: 679 MLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATAL 738
M+ TK+K+I+E + KVH V+ VP+YF +++R+A A +I GLNVLR+INE TA A+
Sbjct: 141 MVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAI 200
Query: 739 AYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKI 798
AYG+ K+ ++N V D G V I G +V S D+ +GG + D
Sbjct: 201 AYGLDKKGCAGGEKN---VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 257
Query: 799 LAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHA 858
+ +++ +F +++K D N RA RL + E+ K+ +S+ S + + I+ + D +
Sbjct: 258 MVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSS-STQASIEIDSLYEGVDFYT 316
Query: 859 ELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH 918
+ R E L +F + K + ++KL I I +VGGS+RIP + +++ F+
Sbjct: 317 SITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFN 376
Query: 919 -KPPSTTLNQDEAVSRGCALQCAILS 943
K + ++N DEAV+ G A+Q AIL
Sbjct: 377 GKELNKSINPDEAVAYGAAVQAAILI 402
Score = 308 bits (791), Expect = 2e-94
Identities = 142/416 (34%), Positives = 222/416 (53%), Gaps = 38/416 (9%)
Query: 1 MSVIGIDFGTE-SCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTN 59
M IGID GT SC + V + G +E I ND R+TPS VAF+D R++G AAKNQ N
Sbjct: 23 MPAIGIDLGTTYSC-VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 81
Query: 60 VKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPF 119
NTIF KRL+GR ++D VQ ++K PF+ + + K
Sbjct: 82 PTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGG------------------KPK-- 121
Query: 120 QSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFT 179
++V Y + F PE++++M+ TK+K+I+E + KVH V+ VP+YF
Sbjct: 122 -----------VQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFN 170
Query: 180 NNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQ 239
+++R+A A +I GLNVLR+INE TA A+AYG+ K+ ++N V D G
Sbjct: 171 DSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKN---VLIFDLGGGTFD 227
Query: 240 VCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSE 299
V I G +V S D+ +GG + D + +++ +F +++K D N RA RL +
Sbjct: 228 VSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTA 287
Query: 300 IEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESK 359
E+ K+ +S+ S + + I+ + D + + R E L +F + K + ++K
Sbjct: 288 CERAKRTLSS-STQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAK 346
Query: 360 LPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSRGCALQCAILS 414
L I I +VGGS+RIP + +++ F+ K + ++N DEAV+ G A+Q AIL
Sbjct: 347 LDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILI 402
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 319 bits (820), Expect = 2e-96
Identities = 185/601 (30%), Positives = 298/601 (49%), Gaps = 87/601 (14%)
Query: 560 MS---VIGIDFGTE-SCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQT 615
MS +GID GT SC + V + G +E I ND R+TPS VAF+D R++G AAKNQ
Sbjct: 1 MSKGPAVGIDLGTTYSC-VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 616 VTNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQ 675
N NT+F KRL+GR +DD VQ ++K PF + ++V Y + F PE+
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPK-VQVEYKGETKSFYPEE 118
Query: 676 LTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTA 735
+++M+ TK+K+I+E + V + V+ VP+YF +++R+A A +IAGLNVLR+INE TA
Sbjct: 119 VSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 178
Query: 736 TALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNI 795
A+AYG+ K+ E R V D G V I G +V S D+ +GG +
Sbjct: 179 AAIAYGLDKKVGAE-----RNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDF 233
Query: 796 DKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKD 855
D + + +F +++K D N RA RL + E+ K+ +S +S + + I+ + D
Sbjct: 234 DNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLS-SSTQASIEIDSLYEGID 292
Query: 856 VHAELKRNDLETLCEHIFGR-IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIE 914
+ + R E L +F ++ K + ++KL + IH I +VGGS+RIP + +++
Sbjct: 293 FYTSITRARFEELNADLFRGTLDPV-EKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQ 351
Query: 915 SVFH-KPPSTTLNQDEAVSRGCALQCAIL----SPAVK-IRHFDVTDVQNYPIKVAWNPV 968
F+ K + ++N DEAV+ G A+Q AIL S V+ + DVT P+ +
Sbjct: 352 DFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVT-----PLSLGIETA 406
Query: 969 GGEDGENLAFSSTQPVPFTKVLTFYRAN--VFDVQAY-------YDCPVPYPTQFVGQFI 1019
GG + ++T P T+ T Y N +Q Y D +G+F
Sbjct: 407 GGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN------NLLGKFE 460
Query: 1020 IKDIKPGPKGKPQKVKVKMTVNVHGVFSVTSASMFEDL-------------------EDQ 1060
+ I P P+G PQ ++V ++ +G+ +V++ D ED
Sbjct: 461 LTGIPPAPRGVPQ-IEVTFDIDANGILNVSA----VDKSTGKENKITITNDKGRLSKEDI 515
Query: 1061 KEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALEEYVYELRDG 1120
+ M + E E K + D +++D+V +KN+LE Y + ++
Sbjct: 516 ERMVQ----------------------EAE-KYKAEDEKQRDKVSSKNSLESYAFNMKAT 552
Query: 1121 L 1121
+
Sbjct: 553 V 553
Score = 298 bits (765), Expect = 8e-89
Identities = 146/420 (34%), Positives = 222/420 (52%), Gaps = 45/420 (10%)
Query: 1 MS---VIGIDFGTE-SCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQT 56
MS +GID GT SC + V + G +E I ND R+TPS VAF+D R++G AAKNQ
Sbjct: 1 MSKGPAVGIDLGTTYSC-VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 57 VTNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKS 116
N NT+F KRL+GR +DD VQ ++K PF + P VQ
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDA----------GRPKVQ----- 104
Query: 117 MPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPS 176
V Y + F PE++++M+ TK+K+I+E + V + V+ VP+
Sbjct: 105 ----------------VEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPA 148
Query: 177 YFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYS 236
YF +++R+A A +IAGLNVLR+INE TA A+AYG+ K+ E R V D G
Sbjct: 149 YFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAE-----RNVLIFDLGGG 203
Query: 237 ALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRL 296
V I G +V S D+ +GG + D + + +F +++K D N RA RL
Sbjct: 204 TFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRL 263
Query: 297 LSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGR-IEICLNKCI 355
+ E+ K+ +S +S + + I+ + D + + R E L +F ++ K +
Sbjct: 264 RTACERAKRTLS-SSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPV-EKAL 321
Query: 356 AESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSRGCALQCAILS 414
++KL + IH I +VGGS+RIP + +++ F+ K + ++N DEAV+ G A+Q AILS
Sbjct: 322 RDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 381
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 309 bits (794), Expect = 7e-95
Identities = 139/385 (36%), Positives = 219/385 (56%), Gaps = 13/385 (3%)
Query: 562 VIGIDFGTE-SCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 620
VIGID GT SC ++V K+G E + N+ R TPS VAF+D R++G AAKNQ N +
Sbjct: 20 VIGIDLGTTYSC-VAVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQ 78
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NTIF KRL+G Y+D VQ+++K +PF + ++ ++V+ ++ VF+PE+++ M+
Sbjct: 79 NTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPA-VEVSVKGEKKVFTPEEISGMI 137
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
K+K I+E+ + KV V+ VP+YF + +R+A A +IAGLNVLR++NE TA A+AY
Sbjct: 138 LGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAY 197
Query: 741 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILA 800
G+ K D + + D G V + + G +V + D+ +GG + D +
Sbjct: 198 GLDKSD---KEHQ---IIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIV 251
Query: 801 EYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAEL 860
+ F K++ ID N +A +L E EK K+ +S+ + I+ F+D D+ L
Sbjct: 252 RQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSS-QMSTRIEIDSFVDGIDLSETL 310
Query: 861 KRNDLETLCEHIFGR-IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH- 918
R E L +F + ++ K + +S L + I +VGGS+RIP + ++ES F
Sbjct: 311 TRAKFEELNLDLFKKTLKPV-EKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDG 369
Query: 919 KPPSTTLNQDEAVSRGCALQCAILS 943
K S +N DEAV+ G A+Q +LS
Sbjct: 370 KKASKGINPDEAVAYGAAVQAGVLS 394
Score = 298 bits (765), Expect = 9e-91
Identities = 141/415 (33%), Positives = 220/415 (53%), Gaps = 43/415 (10%)
Query: 3 VIGIDFGTE-SCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVK 61
VIGID GT SC ++V K+G E + N+ R TPS VAF+D R++G AAKNQ N +
Sbjct: 20 VIGIDLGTTYSC-VAVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQ 78
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NTIF KRL+G Y+D VQ+++K +PF + ++ P V+
Sbjct: 79 NTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGK----------PAVE---------- 118
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
V+ ++ VF+PE+++ M+ K+K I+E+ + KV V+ VP+YF +
Sbjct: 119 -----------VSVKGEKKVFTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDA 167
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC 241
+R+A A +IAGLNVLR++NE TA A+AYG+ K D + + D G V
Sbjct: 168 QRQATKDAGTIAGLNVLRIVNEPTAAAIAYGLDKSD---KEHQ---IIVYDLGGGTFDVS 221
Query: 242 IAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIE 301
+ + G +V + D+ +GG + D + + F K++ ID N +A +L E E
Sbjct: 222 LLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAE 281
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGR-IEICLNKCIAESKL 360
K K+ +S+ + I+ F+D D+ L R E L +F + ++ K + +S L
Sbjct: 282 KAKRALSS-QMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPV-EKVLQDSGL 339
Query: 361 PVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSRGCALQCAILS 414
+ I +VGGS+RIP + ++ES F K S +N DEAV+ G A+Q +LS
Sbjct: 340 EKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 252 bits (646), Expect = 1e-74
Identities = 127/401 (31%), Positives = 207/401 (51%), Gaps = 35/401 (8%)
Query: 560 MS-VIGIDFGT-ESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTV 616
M +IGID GT SC +++ + N R+TPS +A++ ++G AK Q V
Sbjct: 1 MGKIIGIDLGTTNSC-VAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAV 59
Query: 617 TNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQL 676
TN +NT+F KRL+GR + D VQ ++ MPF+ + ++G ++V ++ +P Q+
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK--GQK--MAPPQI 115
Query: 677 TAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTAT 736
+A + K+K +E+ + V + V+ VP+YF + +R+A A IAGL V R+INE TA
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 175
Query: 737 ALAYGIYKQDLPEDDQNPRYVAFVDFG-----YSALQVCIAAFVKGKLKVLSNVCDSEIG 791
ALAYG+ K R +A D G S +++ + +VL+ D+ +G
Sbjct: 176 ALAYGLDKGT------GNRTIAVYDLGGGTFDISIIEID-EVDGEKTFEVLATNGDTHLG 228
Query: 792 GRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPLNIE 848
G + D L Y+ +F K ID R + A RL EK K ++S+ LP
Sbjct: 229 GEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLP---- 284
Query: 849 CF--MDD---KDVHAELKRNDLETLCEHIFGR-IEICLNKCIAESKLPVNAIHSIEIVGG 902
+ D K ++ ++ R LE+L E + R IE+ + ++ L V+ I + +VGG
Sbjct: 285 -YITADATGPKHMNIKVTRAKLESLVEDLVNRSIELL-KVALQDAGLSVSDIDDVILVGG 342
Query: 903 SSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILS 943
+R+P + + F K P +N DEAV+ G A+Q +L+
Sbjct: 343 QTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
Score = 240 bits (615), Expect = 2e-70
Identities = 129/431 (29%), Positives = 209/431 (48%), Gaps = 65/431 (15%)
Query: 1 MS-VIGIDFGT-ESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTV 57
M +IGID GT SC +++ + N R+TPS +A++ ++G AK Q V
Sbjct: 1 MGKIIGIDLGTTNSC-VAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAV 59
Query: 58 TNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSM 117
TN +NT+F KRL+GR + D VQ ++ MPF+ + ++G D +V+ + + M
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNG---------DAWVEVKGQKM 110
Query: 118 PFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSY 177
+P Q++A + K+K +E+ + V + V+ VP+Y
Sbjct: 111 -------------------------APPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAY 145
Query: 178 FTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFG--- 234
F + +R+A A IAGL V R+INE TA ALAYG+ K R +A D G
Sbjct: 146 FNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGT------GNRTIAVYDLGGGT 199
Query: 235 --YSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARA 292
S +++ + +VL+ D+ +GG + D L Y+ +F K ID R + A
Sbjct: 200 FDISIIEID-EVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLA 258
Query: 293 YIRLLSEIEKLKKQMSANSN---KLPLNIECF--MDD---KDVHAELKRNDLETLCEHIF 344
RL EK K ++S+ LP + D K ++ ++ R LE+L E +
Sbjct: 259 MQRLKEAAEKAKIELSSAQQTDVNLP-----YITADATGPKHMNIKVTRAKLESLVEDLV 313
Query: 345 GR-IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVS 403
R IE+ + ++ L V+ I + +VGG +R+P + + F K P +N DEAV+
Sbjct: 314 NRSIELL-KVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVA 372
Query: 404 RGCALQCAILS 414
G A+Q +L+
Sbjct: 373 IGAAVQGGVLT 383
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 251 bits (644), Expect = 6e-72
Identities = 131/412 (31%), Positives = 211/412 (51%), Gaps = 34/412 (8%)
Query: 560 MS-VIGIDFGT-ESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTV 616
M +IGID GT SC +++ + N R+TPS +A++ ++G AK Q V
Sbjct: 1 MGKIIGIDLGTTNSC-VAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAV 59
Query: 617 TNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQL 676
TN +NT+F KRL+GR + D VQ ++ MPF+ + ++G ++V ++ +P Q+
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK--GQK--MAPPQI 115
Query: 677 TAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTAT 736
+A + K+K +E+ + V + V+ VP+YF + +R+A A IAGL V R+INE TA
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 175
Query: 737 ALAYGIYKQDLPEDDQNPRYVAFVDFG-----YSALQVCIAAFVKGKLKVLSNVCDSEIG 791
ALAYG+ K R +A D G S +++ + +VL+ D+ +G
Sbjct: 176 ALAYGLDKGT------GNRTIAVYDLGGGTFDISIIEID-EVDGEKTFEVLATNGDTHLG 228
Query: 792 GRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPLNIE 848
G + D L Y+ +F K ID R + A RL EK K ++S+ LP
Sbjct: 229 GEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLP---- 284
Query: 849 CF--MDD---KDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGS 903
+ D K ++ ++ R LE+L E + R L + ++ L V+ I + +VGG
Sbjct: 285 -YITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQ 343
Query: 904 SRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVT 954
+R+P + + F K P +N DEAV+ G A+Q +L+ VK + DVT
Sbjct: 344 TRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVT 395
Score = 240 bits (614), Expect = 7e-68
Identities = 133/442 (30%), Positives = 213/442 (48%), Gaps = 64/442 (14%)
Query: 1 MS-VIGIDFGT-ESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN-RILGVAAKNQTV 57
M +IGID GT SC +++ + N R+TPS +A++ ++G AK Q V
Sbjct: 1 MGKIIGIDLGTTNSC-VAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAV 59
Query: 58 TNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSM 117
TN +NT+F KRL+GR + D VQ ++ MPF+ + ++G D +V+ + + M
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNG---------DAWVEVKGQKM 110
Query: 118 PFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSY 177
+P Q++A + K+K +E+ + V + V+ VP+Y
Sbjct: 111 -------------------------APPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAY 145
Query: 178 FTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFG--- 234
F + +R+A A IAGL V R+INE TA ALAYG+ K R +A D G
Sbjct: 146 FNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGT------GNRTIAVYDLGGGT 199
Query: 235 --YSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARA 292
S +++ + +VL+ D+ +GG + D L Y+ +F K ID R + A
Sbjct: 200 FDISIIEID-EVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLA 258
Query: 293 YIRLLSEIEKLKKQMSANSN---KLPLNIECF--MDD---KDVHAELKRNDLETLCEHIF 344
RL EK K ++S+ LP + D K ++ ++ R LE+L E +
Sbjct: 259 MQRLKEAAEKAKIELSSAQQTDVNLP-----YITADATGPKHMNIKVTRAKLESLVEDLV 313
Query: 345 GRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSR 404
R L + ++ L V+ I + +VGG +R+P + + F K P +N DEAV+
Sbjct: 314 NRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAI 373
Query: 405 GCALQCAILSPAVK-IRHFDVT 425
G A+Q +L+ VK + DVT
Sbjct: 374 GAAVQGGVLTGDVKDVLLLDVT 395
Score = 35.7 bits (83), Expect = 0.13
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 35/151 (23%)
Query: 1016 GQFIIKDIKPGPKGKPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFN 1075
GQF + I P P+G PQ ++V ++ G+ V++ +D KE
Sbjct: 455 GQFNLDGINPAPRGMPQ-IEVTFDIDADGILHVSA----KDKNSGKE------------- 496
Query: 1076 HYLANIKVHD---LFELEC-KMQ-------DNDRQEKDRVDAKNALEEYVYELRDGLAND 1124
I + L E E KM + DR+ + V +N + ++ R + +
Sbjct: 497 ---QKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQV-EE 552
Query: 1125 KADFITDSNRNVLNKKLDETENWLYEEGQDV 1155
D + ++ + L E L +G+D
Sbjct: 553 AGDKLPADDKTAIESALTALETAL--KGEDK 581
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 225 bits (576), Expect = 8e-64
Identities = 128/406 (31%), Positives = 198/406 (48%), Gaps = 53/406 (13%)
Query: 560 MS-VIGIDFGT-ESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVT 617
MS +IGID GT SC ++V + G ++ I N R+TPS VAF + R++G AK Q +T
Sbjct: 1 MSKIIGIDLGTTNSC-VAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAIT 59
Query: 618 NVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLT 677
N NTI KR +G Y KV K+ ++P++++
Sbjct: 60 NP-NTIISIKRHMGTDY--------------------------KVEIEGKQ--YTPQEIS 90
Query: 678 AMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATA 737
A++ LK +E+ + V V+ VP+YF + +R+A A IAGL V R+INE TA A
Sbjct: 91 AIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAA 150
Query: 738 LAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDK 797
LAYG+ K E+DQ + D G V I G +V + D+ +GG + D+
Sbjct: 151 LAYGLDK----EEDQT---ILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQ 203
Query: 798 ILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPLNIECF--MD 852
++ +Y+ F + + ID + A RL EK KK++S + LP F +
Sbjct: 204 VIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLP-----FISAN 258
Query: 853 D---KDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAF 909
+ + L R E L H+ R + + + ++ L I + +VGGS+RIPA
Sbjct: 259 ENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAV 318
Query: 910 KNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVT 954
+ I+ K P +N DE V+ G A+Q +++ VK + DVT
Sbjct: 319 QEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVT 364
Score = 169 bits (430), Expect = 1e-44
Identities = 90/293 (30%), Positives = 147/293 (50%), Gaps = 21/293 (7%)
Query: 142 FSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLI 201
++P++++A++ LK +E+ + V V+ VP+YF + +R+A A IAGL V R+I
Sbjct: 84 YTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERII 143
Query: 202 NETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEI 261
NE TA ALAYG+ K E+DQ + D G V I G +V + D+ +
Sbjct: 144 NEPTAAALAYGLDK----EEDQT---ILVYDLGGGTFDVSILELGDGVFEVKATAGDNHL 196
Query: 262 GGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSN---KLPLNI 318
GG + D+++ +Y+ F + + ID + A RL EK KK++S + LP
Sbjct: 197 GGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLP--- 253
Query: 319 ECF--MDD---KDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGG 373
F ++ + L R E L H+ R + + + ++ L I + +VGG
Sbjct: 254 --FISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGG 311
Query: 374 SSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVK-IRHFDVT 425
S+RIPA + I+ K P +N DE V+ G A+Q +++ VK + DVT
Sbjct: 312 STRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVT 364
Score = 77.2 bits (191), Expect = 1e-14
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 9/101 (8%)
Query: 1 MS-VIGIDFGT-ESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVT 58
MS +IGID GT SC ++V + G ++ I N R+TPS VAF + R++G AK Q +T
Sbjct: 1 MSKIIGIDLGTTNSC-VAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAIT 59
Query: 59 NVKNTIFGFKRLLGRTY-----DDPFVQEELKSMPFQSLKQ 94
N NTI KR +G Y + +E+ ++ Q LK
Sbjct: 60 NP-NTIISIKRHMGTDYKVEIEGKQYTPQEISAIILQYLKS 99
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 77.0 bits (189), Expect = 3e-14
Identities = 92/613 (15%), Positives = 186/613 (30%), Gaps = 225/613 (36%)
Query: 270 LAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLN-IE-CFMDDKDV 327
+ +++ +V ++P + + ++L L L E C+++ D+
Sbjct: 61 VGKFLG--YVSS-LVEP-SKVGQFDQVL---------------NLCLTEFENCYLEGNDI 101
Query: 328 HAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESV 387
HA +A +KL + + K +I++
Sbjct: 102 HA-------------------------LA-AKLLQEN---------DTTLVKTKELIKNY 126
Query: 388 FH----------KPPSTTLNQDEAVSRGCALQCAIL----SPAVKIRHFDVTDVQN---- 429
K ++ L AV G A AI + +F+ ++++
Sbjct: 127 ITARIMAKRPFDKKSNSALF--RAVGEGNAQLVAIFGGQGNTDD---YFE--ELRDLYQT 179
Query: 430 YP------IKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQAYYDCPVPYP- 482
Y IK + E L+ + KV T ++ + + P P
Sbjct: 180 YHVLVGDLIKFS--------AETLSELIRTTLDAEKVFT----QGLNILEWLENPSNTPD 227
Query: 483 TQFVAYYDCPVPYP----TQFVGQFII----KDIKPRTSRQVRYGYGWYTTTPTTAVCPI 534
++ P+ P Q +++ P R G T + + +
Sbjct: 228 KDYLLS--IPISCPLIGVIQLA-HYVVTAKLLGFTPGELRSYLKG----ATGHSQGL--V 278
Query: 535 VDMIVRQEDEKK----------RLMF---SRYHNV--------QIIMSVIGIDFGTESCY 573
+ + + D + ++F R + I+ + + G S
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 574 LSVAKSG----GIETIV---NDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGF 626
LS+ S ++ V N + V S N AKN V+ +++G
Sbjct: 339 LSI--SNLTQEQVQDYVNKTNSHLPAGKQ--VEISLVN-----GAKNLVVSGPPQSLYGL 389
Query: 627 KRLL----GRTYDD----PFVQEELK--------SMPFQSLKQNDGSIGIKVNYLNKEHV 670
L + D PF + +LK + PF S + L
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS------------HLLVP--- 434
Query: 671 FSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLI 730
+ + + KD+ +N + D + +P Y T + G + LR++
Sbjct: 435 -ASDLI-------NKDLVKNNVSFNAKD--IQIPVYDTFD------------GSD-LRVL 471
Query: 731 NETTATALAYGIYKQDLPED-DQNPRYVA--FVDFGYSALQVCIAAFVKGKLKVLSNVCD 787
+ + + + I + LP + ++ A +DFG G L +
Sbjct: 472 SGSISERIVDCIIR--LPVKWETTTQFKATHILDFG------------PGGASGLGVLTH 517
Query: 788 SEIGGRNIDKILA 800
G + I+A
Sbjct: 518 RNKDGTGVRVIVA 530
Score = 59.7 bits (144), Expect = 8e-09
Identities = 83/474 (17%), Positives = 134/474 (28%), Gaps = 200/474 (42%)
Query: 63 TIFG--------FK--RLLGRTYDDPFVQEELKSM--PFQSLKQNDGSI------GF--- 101
IFG F+ R L +TY V + +K L + G
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 102 -W-----ETYDDPFVQEELKSMPFQSLKQNDGSIGIK--VNYLN--KEHVFSPEQLTAML 151
W T D + L S+P S IG+ +Y+ K F+P +L
Sbjct: 217 EWLENPSNTPDKDY----LLSIPI-SCPL----IGVIQLAHYVVTAKLLGFTPGEL---- 263
Query: 152 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 211
+ LK + H + L+TA +IA + + +
Sbjct: 264 RSYLKGAT-------GHS--------------QGLVTAVAIAE--------TDSWESF-F 293
Query: 212 GIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNI-DKIL 270
++ + + F+ G + A+ L S + DS + +L
Sbjct: 294 VSVRKAI-------TVLFFI--GVRCYE----AYPNTSLP-PSILEDSLENNEGVPSPML 339
Query: 271 AEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAE 330
+ I L++ E+++ ++ ++ LP K V
Sbjct: 340 S----------------------ISNLTQ-EQVQDYVNKTNSHLP-------AGKQVEIS 369
Query: 331 LK---RN--------DLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPA 379
L +N L L L K A S L + I S R
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLT--------LRKAKAPSGLDQSRIP------FSERKLK 415
Query: 380 FKNV---IESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKVAW 436
F N + S FH +L PA + + D+ V++
Sbjct: 416 FSNRFLPVASPFHSH--------------------LLVPASDLINKDLVK-----NNVSF 450
Query: 437 N------PV-GGEDGENLAFSS------------TQPV--------PFTKVLTF 463
N PV DG +L S PV T +L F
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 58.5 bits (141), Expect = 1e-08
Identities = 65/336 (19%), Positives = 102/336 (30%), Gaps = 137/336 (40%)
Query: 560 MSVIGIDFGTESCYLSVAKSGGIETIVN--DYSLRSTPSCVAFSDKNRILGVAAKNQTVT 617
M G+D S A+ + N D + T FS IL + N
Sbjct: 1631 M---GMDLYKTS---KAAQD-----VWNRADNHFKDT---YGFS----ILDIVINNPV-- 1670
Query: 618 NVKNTI-FGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIK-----VNYLNKEHVF 671
TI FG ++ G+ ++E +M F+++ DG + + +N + + F
Sbjct: 1671 --NLTIHFGGEK--GKR-----IRENYSAMIFETIV--DGKLKTEKIFKEINEHSTSYTF 1719
Query: 672 SP--EQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLR- 728
L+A FT Q P AL A L+
Sbjct: 1720 RSEKGLLSATQFT----------Q----------P---------ALTLM-EKAAFEDLKS 1749
Query: 729 --LINETTA---------TALAY-----------------GIYKQDLPEDDQ-------- 752
LI ALA G+ Q D+
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 753 ---NPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNV---CDSE---IGG--RNIDKILAE 801
NP VA F ALQ + K ++ V +++ G R +D +
Sbjct: 1810 IAINPGRVA-ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT-VTN 1867
Query: 802 YISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMS 837
+ +F+K KID I +L+K +S
Sbjct: 1868 VL--NFIKLQKID--------------IIELQKSLS 1887
Score = 58.1 bits (140), Expect = 2e-08
Identities = 84/569 (14%), Positives = 164/569 (28%), Gaps = 221/569 (38%)
Query: 799 LAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLN-IE-CFMDDKDV 856
+ +++ +V ++P + + ++L L L E C+++ D+
Sbjct: 61 VGKFLG--YVSS-LVEP-SKVGQFDQVL---------------NLCLTEFENCYLEGNDI 101
Query: 857 HAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESV 916
HA +A +KL + + K +I++
Sbjct: 102 HA-------------------------LA-AKLLQEN---------DTTLVKTKELIKNY 126
Query: 917 FH----------KPPSTTLNQDEAVSRGCALQCAIL----SPAVKIRHFDVTDVQN---- 958
K ++ L AV G A AI + +F+ ++++
Sbjct: 127 ITARIMAKRPFDKKSNSALF--RAVGEGNAQLVAIFGGQGNTDD---YFE--ELRDLYQT 179
Query: 959 YP------IKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDVQA---------- 1002
Y IK + E L+ + KV T ++
Sbjct: 180 YHVLVGDLIKFS--------AETLSELIRTTLDAEKVFT----QGLNILEWLENPSNTPD 227
Query: 1003 -YY--DCPVPYP----TQFVGQFII---------KDIKPGPKGKPQKVKVKMTVNVHGVF 1046
Y P+ P Q +++ +++ KG T + G+
Sbjct: 228 KDYLLSIPISCPLIGVIQLA-HYVVTAKLLGFTPGELRSYLKG--------ATGHSQGLV 278
Query: 1047 S--VTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRV 1104
+ + + D E F + SV A I V LF + + +
Sbjct: 279 TAVAIAET------DSWESF-----FVSV---RKA-ITV--LFFIGVRCY----EAYPNT 317
Query: 1105 DAKNALEEYVYELRDG-----LANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSV 1159
++ E E +G L+ I++ + + +++T + L Q V S+
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLS------ISNLTQEQVQDYVNKTNSHLPAGKQ-VEISL 370
Query: 1160 YNDRLNSLRTV--GDPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAF-----KGDDRF 1212
N N V G P + + +R K S + F K +RF
Sbjct: 371 VNGAKN---LVVSGPPQSLYGLNLTLR-------KAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 1213 --------SHLSKQDLSTVETAIKQHV--KWIEEKVSKLKSLP----------KHENPPI 1252
SHL L I + + + ++ +P + + I
Sbjct: 421 LPVASPFHSHL----LVPASDLINKDLVKNNVSFNAKDIQ-IPVYDTFDGSDLRVLSGSI 475
Query: 1253 T---CDQIREEKYKFEKSV-WSVLNKPKP 1277
+ D I V W + K
Sbjct: 476 SERIVDCI------IRLPVKWETTTQFKA 498
Score = 58.1 bits (140), Expect = 2e-08
Identities = 67/359 (18%), Positives = 106/359 (29%), Gaps = 153/359 (42%)
Query: 1 MSVIGIDFGTESCYLSVAKSGGIETIVN--DYSLRSTPSCVAFSDKNRILGVAAKNQTVT 58
M G+D S A+ + N D + T FS IL + N
Sbjct: 1631 M---GMDLYKTS---KAAQD-----VWNRADNHFKDT---YGFS----ILDIVINNPV-- 1670
Query: 59 NVKNTI-FGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSM 117
TI FG ++ G+ ++E +M F+++ DG + + + + + E S
Sbjct: 1671 --NLTIHFGGEK--GKR-----IRENYSAMIFETIV--DGKLKTEKIFKE--INEHSTSY 1717
Query: 118 PFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSY 177
F+ G+ L+ T FT Q P
Sbjct: 1718 TFR------SEKGL----LS---------ATQ--FT----------Q----------P-- 1734
Query: 178 FTNNERKALLTAASIAGLNVLR---LINETTA---------TALAY-------------- 211
AL A L+ LI ALA
Sbjct: 1735 -------ALTLM-EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 212 ---GIYKQDLPEDDQ-----------NPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNV- 256
G+ Q D+ NP VA F ALQ + K ++ V
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVA-ASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 257 --CDSE---IGG--RNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMS 308
+++ G R +D + + +F+K KID I +L+K +S
Sbjct: 1846 YNVENQQYVAAGDLRALDT-VTNVL--NFIKLQKID--------------IIELQKSLS 1887
Score = 54.7 bits (131), Expect = 2e-07
Identities = 100/627 (15%), Positives = 186/627 (29%), Gaps = 231/627 (36%)
Query: 454 PVPFTKVLTFYRANVFDVQAYYDCPVPYPTQFVAYYD---CPVPYPTQFVGQFIIKDIKP 510
VP T +F+ A+ +Q ++ +P PT+ A D P +F+G ++ ++P
Sbjct: 21 LVP-TA--SFFIASQ--LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-YVSSLVEP 74
Query: 511 RTSRQVRYGYGWYTTTPTTAVCPIVDMIVRQED----------------EKKRLMFSRYH 554
Q + + + + D K + + Y
Sbjct: 75 SKVGQ-------FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 555 NVQIIMSVIGIDFGTESCYLSVAKSGGIETIV--------NDY--SLRST----PSCVAF 600
+I+ D + S G + + +DY LR V
Sbjct: 128 TARIMAK-RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG- 185
Query: 601 SDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYD------DPFV---QEELKSMPFQSL 651
++ +A +T++ + T +++ + + +P ++ L S+P S
Sbjct: 186 ----DLIKFSA--ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SC 238
Query: 652 KQNDGSIGIK--VNYLN--KEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYF 707
IG+ +Y+ K F+P +L + LK + H
Sbjct: 239 PL----IGVIQLAHYVVTAKLLGFTPGEL----RSYLKGAT-------GHS--------- 274
Query: 708 TNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSAL 767
+ L+TA +IA + + + ++ + + F+ G
Sbjct: 275 -----QGLVTAVAIAE--------TDSWESF-FVSVRKAI-------TVLFFI--GVRCY 311
Query: 768 QVCIAAFVKGKLKVLSNVCDSEIGGRNI-DKILAEYISTDFVKRYKIDPRTNARAYIRLL 826
+ A+ L S + DS + +L+ I L
Sbjct: 312 E----AYPNTSLP-PSILEDSLENNEGVPSPMLS----------------------ISNL 344
Query: 827 SEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELK---RN--------DLETLCEHIFGR 875
++ E+++ ++ ++ LP K V L +N L L
Sbjct: 345 TQ-EQVQDYVNKTNSHLP-------AGKQVEISLVNGAKNLVVSGPPQSLYGLNLT---- 392
Query: 876 IEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNV---IESVFHKPPSTTLNQDEAVS 932
L K A S L + I S R F N + S FH
Sbjct: 393 ----LRKAKAPSGLDQSRIP------FSERKLKFSNRFLPVASPFHSH------------ 430
Query: 933 RGCALQCAILSPAVKIRHFDVTDVQNYPIKVAWN------PV-GGEDGENLAFSS----- 980
+L PA + + D+ V++N PV DG +L S
Sbjct: 431 --------LLVPASDLINKDLVK-----NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 981 -------TQPV--------PFTKVLTF 992
PV T +L F
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 53.9 bits (129), Expect = 4e-07
Identities = 89/533 (16%), Positives = 174/533 (32%), Gaps = 178/533 (33%)
Query: 830 EKLKKQMSANSNKLPLNIECF-MDDKDVH-AELKRNDLETLCEHI--------FGRIEIC 879
+L++Q + LP E F DD+ AEL + ++ G+ +
Sbjct: 31 SQLQEQFNKI---LPEPTEGFAADDEPTTPAEL----VGKFLGYVSSLVEPSKVGQFDQV 83
Query: 880 LNKCIA--ESK-LPVNAIHSI--EIVGGS-SRIPAFKNVIESVFH----------KPPST 923
LN C+ E+ L N IH++ +++ + + + K +I++ K ++
Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 924 TLNQDEAVSRGCALQCAIL----SPAVKIRHFDVTDVQN----YP------IKVAWNPVG 969
L AV G A AI + +F+ ++++ Y IK +
Sbjct: 144 ALF--RAVGEGNAQLVAIFGGQGNTDD---YFE--ELRDLYQTYHVLVGDLIKFS----- 191
Query: 970 GEDGENLAFSSTQPVPFTKVLTFYRANVFDVQA-----------YY--DCPVPYP----T 1012
E L+ + KV T ++ Y P+ P
Sbjct: 192 ---AETLSELIRTTLDAEKVFT----QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 1013 QFVGQFII---------KDIKPGPKGKPQKVKVKMTVNVHGVFS--VTSASMFEDLEDQK 1061
Q +++ +++ KG T + G+ + + + D
Sbjct: 245 QLA-HYVVTAKLLGFTPGELRSYLKG--------ATGHSQGLVTAVAIAET------DSW 289
Query: 1062 EMFKCDLPYDSVFN--HYLANI--KVHDLF---ELECKM-QDN-DRQEKD-------RVD 1105
E F + SV L I + ++ + L + +D+ + E
Sbjct: 290 ESF-----FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 1106 AKNALEEYVYELRDGLANDKADFITDSN--RNV-----------LNKKLDETENWLYEEG 1152
+ +++YV + L K I+ N +N+ LN L + + G
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA---PSG 401
Query: 1153 QDVNRSVYNDRLNSLRTVGDPVKMRAMEYAMRP---NILEEYKHSVQSAKNIVDAAFKGD 1209
D +R +++R PV + P ++L + + +F
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPV------AS--PFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 1210 D-RF--------SHLSKQDLST------VETAIKQHVKWIEEKVSKLKSLPKH 1247
D + S L + LS V+ I+ VKW E ++ K+ H
Sbjct: 454 DIQIPVYDTFDGSDL--RVLSGSISERIVDCIIRLPVKW--ETTTQFKAT--H 500
Score = 52.7 bits (126), Expect = 1e-06
Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 49/258 (18%)
Query: 1043 HGVFSVT---SASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQD--ND 1097
HG + F +E F LP + + A+ + EL K +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPT--EGFAADDEPTTPAELVGKFLGYVSS 70
Query: 1098 RQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNR 1157
E +V + + L L + ++ ++ + L KL + + + +++ +
Sbjct: 71 LVEPSKVGQFDQV------LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 1158 SVYNDRLNSLRTVGDPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAFKG----DDRFS 1213
+ R+ + R + L +V + A F G DD F
Sbjct: 125 NYITARIMAKRPFDKK----------SNSALFR---AVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 1214 HLSKQDL-STVETAIKQHVKWIEEKVSKLKSLPKHENPPITCDQIREEKYKFEKSVWSVL 1272
L +DL T + I+ L L + + +++ + + W L
Sbjct: 172 EL--RDLYQTYHVLVGD---LIKFSAETLSELIRT---TLDAEKVFTQGLNILE--W--L 219
Query: 1273 NKPKPAPP------APNS 1284
P P P S
Sbjct: 220 ENPSNTPDKDYLLSIPIS 237
Score = 46.2 bits (109), Expect = 9e-05
Identities = 63/312 (20%), Positives = 104/312 (33%), Gaps = 94/312 (30%)
Query: 943 SPAVKI------RH------FDVTD-VQNYPIKVAWNPVGGEDG----ENLAFSSTQPVP 985
S A + H F + D V N P+ + + GGE G EN
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF-GGEKGKRIREN---------- 1687
Query: 986 FTKVLTFYRANVFDVQAYYDCPVPYPTQF--VGQFIIKDIKPGPKGKPQKVKVKMTVNVH 1043
Y A +F+ D + F + + KG + T
Sbjct: 1688 -------YSAMIFE--TIVDGKLKTEKIFKEINEHSTSYTFRSEKGL-----LSATQFTQ 1733
Query: 1044 -GVFSVTSASMFEDLEDQKEMFKCDLPYDSVF-NH----Y-----LAN-IKVHDLFEL-- 1089
+ + + FEDL+ K +P D+ F H Y LA+ + + L E+
Sbjct: 1734 PALT-LMEKAAFEDLKS-----KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF 1787
Query: 1090 ---ECKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETEN 1146
R E R + + + G A F ++ + V+ + T
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYG------MIAINPGRV--AASFSQEALQYVVERVGKRT-G 1838
Query: 1147 WLYEEGQDVNRSVYNDRLNSLRTV--GDPVKMRAMEYAMRPNILEEYKHSVQSAKNI-VD 1203
WL E VN YN + + + V GD +RA++ N+L K +Q I +
Sbjct: 1839 WLVEI---VN---YN--VENQQYVAAGD---LRALDTVT--NVLNFIK--LQKIDIIELQ 1883
Query: 1204 AAFKGDDRFSHL 1215
+ ++ HL
Sbjct: 1884 KSLSLEEVEGHL 1895
Score = 45.8 bits (108), Expect = 1e-04
Identities = 57/321 (17%), Positives = 88/321 (27%), Gaps = 116/321 (36%)
Query: 414 SPAVKI------RH------FDVTD-VQNYPIKVAWNPVGGEDG----EN---LAFSSTQ 453
S A + H F + D V N P+ + + GGE G EN + F +
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHF-GGEKGKRIRENYSAMIFETIV 1697
Query: 454 PVPFTKVLTFYRANVFDVQAYYDCP--VPYPTQFVAYYDCPVPYPTQ---F-VGQFIIKD 507
F N + + TQF TQ + + +D
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-----------TQPALTLMEKAAFED 1746
Query: 508 IKPRTSRQVRYGY-----GWYTTTPTTA-VC-----PIVDMI--VRQ----------EDE 544
+K + + G Y A I ++ V DE
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYA-----ALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 545 KKRLMFSRYHNVQIIMSVIGIDFGTESCYLSV----AKSGGIETIVNDYSLRSTPSCVAF 600
R S Y + I + F E+ V ++G + IVN
Sbjct: 1802 LGR---SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY------------ 1846
Query: 601 SDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGI 660
N +NQ V G R L + + ++ L I
Sbjct: 1847 ---N------VENQQY--V---AAGDLRAL----------DTVTNV----LNFI-KLQKI 1877
Query: 661 KVNYLNKEHVFSPEQLTAMLF 681
+ L K S E++ LF
Sbjct: 1878 DIIELQKS--LSLEEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 3e-12
Identities = 95/682 (13%), Positives = 184/682 (26%), Gaps = 239/682 (35%)
Query: 583 ETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLG--RTYDDPFVQ 640
+ V+++ + D + + + + K+ + G RL + + VQ
Sbjct: 27 DAFVDNFDCKDVQ------DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 641 EELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCV 700
+ ++ L+ N + + ++ P +T M E ++++++
Sbjct: 81 KFVEE----VLRINYKFLMSPIKTEQRQ----PSMMTRMY---------IEQRDRLYNDN 123
Query: 701 LAVPSYFTNNE------RKALLTAASIAGL---------------NVLRLINETTATALA 739
Y + R+ALL + +V + +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMD 181
Query: 740 YGIY-----KQDLPEDD----QN------PRYVAFVDFGYS------ALQVCIAAFVKGK 778
+ I+ + PE Q P + + D + ++Q + +K K
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 779 -----LKVLSNVCDSEIGGRNID------KILAEYISTDFVKRYK--IDPRTNARAYIRL 825
L VL NV +++ + KIL ++T R+K D + A
Sbjct: 242 PYENCLLVLLNVQNAKA----WNAFNLSCKIL---LTT----RFKQVTDFLSAATTTHIS 290
Query: 826 LSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIA 885
L D E + + L+
Sbjct: 291 LDHHSMT-----------------LTPD------------EVK--SLLLK---YLD--CR 314
Query: 886 ESKLPVNA--IH--SIEIVG-----GSSRIPAFKNVIESVFHKPPSTTLNQ-DEAVSRGC 935
LP + + I+ G + +K+V ++LN + A R
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 936 ALQCAILSPAVKIRHFDVTDVQNYPIKV---AWNPVGGEDGEN----LAFSS---TQPVP 985
+ ++ P+ I P + W V D L S QP
Sbjct: 375 FDRLSVFPPSAHI-----------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 986 FT----------------------KVLTFYRAN-VFDVQAYYDCPVPYPTQFVGQFI--- 1019
T ++ Y FD D PY Q+ I
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPPYLDQYFYSHIGHH 480
Query: 1020 IKDIKPGPKGK--PQ--------KVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLP 1069
+K+I+ + + K++ S S+ L+
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHD----STAWNASGSILNTLQQ---------- 526
Query: 1070 YDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALEEYVYELRDGLANDKADFI 1129
Y I DND E V + D L + + I
Sbjct: 527 ----LKFYKPYI------------CDND----------PKYERLVNAILDFLPKIEENLI 560
Query: 1130 TDSNRNVLNKKLDETENWLYEE 1151
++L L + ++EE
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEE 582
Score = 69.5 bits (169), Expect = 7e-12
Identities = 92/672 (13%), Positives = 184/672 (27%), Gaps = 223/672 (33%)
Query: 24 ETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLG--RTYDDPFVQ 81
+ V+++ + D + + + + K+ + G RL + + VQ
Sbjct: 27 DAFVDNFDCKDVQ------DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 82 EELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSLK---QNDGSIGIKVNYLNK 138
+ ++ L+ N + Q + + + + ND + K
Sbjct: 81 KFVEE----VLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV------FAK 128
Query: 139 EHVFSPEQLTAMLFTKLKDISENE-IQNKVHD---C---VLAVPSYFTNNERKALLTAAS 191
+V + L L ++ + + + +A
Sbjct: 129 YNVSRLQPYLK-LRQALLELRPAKNVL--IDGVLGSGKTWVA------------------ 167
Query: 192 IAGLNVLRLINETTATALAYGIY-----KQDLPEDD----QN------PRYVAFVDFGYS 236
L+V + + + I+ + PE Q P + + D +
Sbjct: 168 ---LDVCL--SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 237 ------ALQVCIAAFVKGK-----LKVLSNVCDSEIGGRNID------KILAEYISTDFV 279
++Q + +K K L VL NV +++ + KIL ++T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA----WNAFNLSCKIL---LTT--- 272
Query: 280 KRYK--IDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLE 337
R+K D + A L D E
Sbjct: 273 -RFKQVTDFLSAATTTHISLDHHSMT-----------------LTPD------------E 302
Query: 338 TLCEHIFGRIEICLNKCIAESKLPVNA--IH--SIEIVG-----GSSRIPAFKNVIESVF 388
+ + L+ LP + + I+ G + +K+V
Sbjct: 303 VK--SLLLK---YLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 389 HKPPSTTLNQ-DEAVSRGCALQCAILSPAVKIRHFDVTDVQNYPIKV---AWNPVGGEDG 444
++LN + A R + ++ P+ I P + W V D
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-----------PTILLSLIWFDVIKSDV 404
Query: 445 EN----LAFSS---TQPVPFTKVLTFYRANVFDVQAYYDCPVPYPTQ----FVAYY---- 489
L S QP T + + + V +Y
Sbjct: 405 MVVVNKLHKYSLVEKQPKEST-----IS--IPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 490 -----DCPVPYPTQFVGQFI---IKDIKP--RTS--RQVRYGYGW------YTTTPTTAV 531
D PY Q+ I +K+I+ R + R V + + + +T A
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 532 CPIVDM----------IVRQEDEKKRLM-----FSRYHNVQIIMSVIGIDFGTESCYLSV 576
I++ I + + +RL+ F +I S + L +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS-------KYTDLLRI 570
Query: 577 AKSGGIETIVND 588
A E I +
Sbjct: 571 ALMAEDEAIFEE 582
Score = 61.4 bits (148), Expect = 2e-09
Identities = 58/361 (16%), Positives = 111/361 (30%), Gaps = 103/361 (28%)
Query: 40 AFSDKNRILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQEELKS-------MPFQSL 92
AF+ +IL + + + VT+ + L + +E+KS Q L
Sbjct: 261 AFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDH-HSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 93 KQNDGSIGFWETYDDPFV----QEELKSMP--FQSLKQNDGS-----IGIKVNYLN---- 137
+ + +P E ++ + + K + I +N L
Sbjct: 319 PREVLTT-------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 138 KEH-----VFS-----PEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALL 187
++ VF P L ++++ + + NK+H L E++
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--------EKQPKE 423
Query: 188 TAASIAGLNVLRLINETTATAL------AYGIYKQDLPEDDQNPR-------YVA----- 229
+ SI + + + AL Y I K +D P ++
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 230 -------------FVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYIST 276
F+DF F++ K++ S ++ N + L Y
Sbjct: 484 IEHPERMTLFRMVFLDFR----------FLEQKIRHDSTAWNASGSILNTLQQLKFY--- 530
Query: 277 DFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLP----LNIECFMDDKDVHAELK 332
K Y D N Y RL++ I ++ N L I +D+ + E
Sbjct: 531 ---KPYICD---NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Query: 333 R 333
+
Sbjct: 585 K 585
Score = 55.2 bits (132), Expect = 1e-07
Identities = 102/651 (15%), Positives = 193/651 (29%), Gaps = 171/651 (26%)
Query: 686 DISENEIQNKVHDCVLAVPSYFTNN--------ERKALLTAASIAGLNVLRLINETTATA 737
D E Q + D + F +N K++L+ I +++ + + T
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID--HIIMSKDAVSGTL 65
Query: 738 LAYGIYKQDLPEDDQNPRYVAFVDFG----YSALQVCIAAFVKGKLKVLSNVCDSEIGGR 793
+ Q FV+ Y L I + + +
Sbjct: 66 RLFWTL-----LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 794 NIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLK--------KQMSANSNKLPL 845
N +++ A+Y V R + P R + L + + K A L
Sbjct: 121 NDNQVFAKY----NVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 846 NIECFMDDKDVH----AELKRND-----LETLCEHIFGRIEICLNKCIAESKLPVNAIHS 896
++C MD K + + L+ L I N + S N
Sbjct: 175 KVQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQIDP------NWT-SRSDHSSNIKLR 226
Query: 897 IEIVGGSSRI----PAFKN---VIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIR 949
I + R ++N V+ +V Q+ L C IL + R
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNV----------QNAKAWNAFNLSCKIL---LTTR 273
Query: 950 HFDVTDV----QNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVFDV--QAY 1003
VTD I + + + E + K L D+ +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-------LLKYL---DCRPQDLPREV- 322
Query: 1004 YDCPV-PYPTQFVGQFIIKDIKPGPKGKPQKVKVKMTVNVHGVFSVTSASMFEDLE--DQ 1060
P I + I+ G K VN + ++ +S LE +
Sbjct: 323 --LTTNP----RRLSIIAESIRDGLA-TWDNWK---HVNCDKLTTIIESS-LNVLEPAEY 371
Query: 1061 KEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALEEYVYELRDG 1120
++MF L SVF A+I L + + +D + V +L
Sbjct: 372 RKMFD-RL---SVFPPS-AHIPTILLSLIWFDVIKSD------------VMVVVNKLH-- 412
Query: 1121 LANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAME 1180
+++ K+ E+ + S+Y + L E
Sbjct: 413 ------------KYSLVEKQPKESTISIP--------SIYLELKVKLEN----------E 442
Query: 1181 YAMRPNILEEYKHSVQSAKNIVDAAFKGDDRFS------HLSKQDLS---TVETAIKQHV 1231
YA+ +I++ Y + D D++ HL + T+ +
Sbjct: 443 YALHRSIVDHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 1232 KWIEEKVSKLKSLPKHENPPITCDQIREEKYK---------FEKSVWSVLN 1273
+++E+K+ + S + + I + + YK +E+ V ++L+
Sbjct: 501 RFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Score = 54.1 bits (129), Expect = 3e-07
Identities = 66/477 (13%), Positives = 136/477 (28%), Gaps = 146/477 (30%)
Query: 831 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 890
+ + + L + + F+D+ D D++ + + I + EI
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDC------KDVQDMPKSILSKEEI------------ 51
Query: 891 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAILSPAVKIRH 950
I+ + + ++ K V+ +
Sbjct: 52 ------DHIIMSKDAVSGTLRLFWTLLSKQEEM----------------------VQ-KF 82
Query: 951 FDVTDVQNYPIKVAWNPVGGEDGENLAFSSTQPVPFTKVLTFYRANVF-DVQAYYDCPVP 1009
+ NY +P+ E QP T++ R ++ D Q + V
Sbjct: 83 VEEVLRINYKF--LMSPIKTEQ--------RQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 1010 YPTQFVG-QFIIKDIKPGPKGKPQKVKVKMTVNVHGVF----SVTSASMFEDLEDQKEMF 1064
++ + + +++P V + GV + + + + Q +M
Sbjct: 133 RLQPYLKLRQALLELRPAKN-----------VLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 1065 KCDLPYDSVFNHYLANIKVHDLFELECKMQDN-----DRQEKDRVDAKNALEEYVYELRD 1119
+F +L N+K + E +M D R D + ++ ++ ++
Sbjct: 182 ------FKIF--WL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 1120 GLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRLNSLRTVGDPVKMRAM 1179
L R +L K Y + L L V + A
Sbjct: 233 EL------------RRLLKSK------------------PYENCLLVLLNVQNAKAWNAF 262
Query: 1180 EYAMRPNILEEYKHSVQSA-KNIVDAAFKGDDRFSHLSKQDLSTVET---AIKQHVKWIE 1235
+ + IL + + K + D +H+S S T +K+++
Sbjct: 263 NLSCK--IL------LTTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 1236 EKVSKLKSLPKHENP-------------PITCDQIREEKY-KFEKSVWSVLNKPKPA 1278
+ L NP T D + K + S LN +PA
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 62.3 bits (151), Expect = 9e-12
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 1100 EKDRVDAKNALEEYVYELRDGLANDK-ADFITDSNRNVLNKKLDETENWLYEEGQDVNRS 1158
+RV AKNALE Y + ++ + ++ I+++++ + K E +WL + +
Sbjct: 4 AAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWL-DANTLAEKD 62
Query: 1159 VYNDRLNSLRTVGDPVKMRAMEYAMRP 1185
+ + L V +P+ + A P
Sbjct: 63 EFEHKRKELEQVCNPIISGLYQGAGGP 89
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 61.1 bits (148), Expect = 3e-11
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 1092 KMQDNDRQEKDRVDAKNALEEYVYELRDGLANDK-ADFITDSNRNVLNKKLDETENWLYE 1150
+ + LE Y + L+ + ++K D I+ ++ + K DE WL +
Sbjct: 5 HHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL-D 63
Query: 1151 EGQDVNRSVYNDRLNSLRTVGDPVKMRAMEYAM 1183
Q + + + L + +P+ + + A
Sbjct: 64 SNQTAEKEEFEHQQKDLEGLANPIISKLYQSAG 96
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 61.7 bits (149), Expect = 5e-10
Identities = 57/392 (14%), Positives = 105/392 (26%), Gaps = 92/392 (23%)
Query: 560 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRI-LGVAAKNQTVTN 618
M V+G+D G G + I D PS A ++ +G +
Sbjct: 21 MVVVGLDVGY----------GDTKVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDG 70
Query: 619 VKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTA 678
+ K + G + + + ++
Sbjct: 71 GQTKFIYGKY----------------------------ASGNNIRVPQGDGRLASKEAFP 102
Query: 679 MLFTKLKDISENEIQNKVHDCV-LAVPSYFTNNERKALLTAA------------SIAGLN 725
++ L + + + V + P + E KA A + N
Sbjct: 103 LIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFN 162
Query: 726 VLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNV 785
+ RLI A + Q + E P Y +D G V + + + +
Sbjct: 163 ITRLIMRPQGVGAALYLLNQGIIEQQ--PGYGVVIDVGSRTTDVLTINLMDM--EPVVEL 218
Query: 786 CDS-EIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLP 844
S +IG + L+ I+ + D ++ K
Sbjct: 219 SFSLQIGVGDAISALSRKIAKETGFVVPFD-------------LAQEALSHPVMFRQK-Q 264
Query: 845 LNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSS 904
+ E+ LE L I I + L V+ + S+ VGG S
Sbjct: 265 VGGP----------EVSGPILEDLANRIIENIRLNLRG-------EVDRVTSLIPVGGGS 307
Query: 905 RIPAFKNVIESVFHKPPSTTLNQD--EAVSRG 934
+ + E + +D A + G
Sbjct: 308 NL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
Score = 41.3 bits (96), Expect = 0.001
Identities = 57/409 (13%), Positives = 105/409 (25%), Gaps = 96/409 (23%)
Query: 1 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRI-LGVAAKNQTVTN 59
M V+G+D G G + I D PS A ++ +G +
Sbjct: 21 MVVVGLDVGY----------GDTKVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDG 70
Query: 60 VKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPF 119
+ K G P D +E +
Sbjct: 71 GQTKFIYGKYASGNNIRVPQ-------------------------GDGRLASKEAFPLIA 105
Query: 120 QSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFT 179
+L ++ + ++ + + +++ K A
Sbjct: 106 AALWESGIH-------------NDGSPVDLVIGSGT-PLGTFDLEVK------AAKEALE 145
Query: 180 NNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQ 239
N + N+ RLI A + Q + E P Y +D G
Sbjct: 146 NKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQ--PGYGVVIDVGSRTTD 203
Query: 240 VCIAAFVKGKLKVLSNVCDS-EIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLS 298
V + + + + S +IG + L+ I+ + D
Sbjct: 204 VLTINLMDM--EPVVELSFSLQIGVGDAISALSRKIAKETGFVVPFD------------- 248
Query: 299 EIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAES 358
++ K + E+ LE L I I + L
Sbjct: 249 LAQEALSHPVMFRQK-QVGGP----------EVSGPILEDLANRIIENIRLNLRG----- 292
Query: 359 KLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQD--EAVSRG 405
V+ + S+ VGG S + + E + +D A + G
Sbjct: 293 --EVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 58.0 bits (141), Expect = 4e-09
Identities = 47/279 (16%), Positives = 84/279 (30%), Gaps = 77/279 (27%)
Query: 138 KEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNV 197
K+ + + +LK E + +++ A+P +A + AGL +
Sbjct: 63 KDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLEL 122
Query: 198 LRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC-----IAAFVKGKLKV 252
+ L++E A A A GI + VD G IA KGK+
Sbjct: 123 VTLVDEPVAAARALGI--------NDG----IVVDIG-------GGTTGIAVIEKGKI-T 162
Query: 253 LSNVCDSEIGGRNIDKILAEYISTDFVK--RYKIDPRTNARAYIRLLSEIEKLKKQMSAN 310
+ D GG ++ +LA F + K D + + IEK+
Sbjct: 163 ATF--DEPTGGTHLSLVLAGSYKIPFEEAETIKKDFSRHREIMRVVRPVIEKM------- 213
Query: 311 SNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEI 370
A + + ++ + LP + +
Sbjct: 214 ------------------ALIVKEVIKNY-----------------DQTLP------VYV 232
Query: 371 VGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 409
VGG++ + F K ++ G AL
Sbjct: 233 VGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALF 271
Score = 58.0 bits (141), Expect = 4e-09
Identities = 47/279 (16%), Positives = 84/279 (30%), Gaps = 77/279 (27%)
Query: 667 KEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNV 726
K+ + + +LK E + +++ A+P +A + AGL +
Sbjct: 63 KDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLEL 122
Query: 727 LRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVC-----IAAFVKGKLKV 781
+ L++E A A A GI + VD G IA KGK+
Sbjct: 123 VTLVDEPVAAARALGI--------NDG----IVVDIG-------GGTTGIAVIEKGKI-T 162
Query: 782 LSNVCDSEIGGRNIDKILAEYISTDFVK--RYKIDPRTNARAYIRLLSEIEKLKKQMSAN 839
+ D GG ++ +LA F + K D + + IEK+
Sbjct: 163 ATF--DEPTGGTHLSLVLAGSYKIPFEEAETIKKDFSRHREIMRVVRPVIEKM------- 213
Query: 840 SNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEI 899
A + + ++ + LP + +
Sbjct: 214 ------------------ALIVKEVIKNY-----------------DQTLP------VYV 232
Query: 900 VGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQ 938
VGG++ + F K ++ G AL
Sbjct: 233 VGGTAYLTGFSEEFSRFLGKEVQVPIHPLLVTPLGIALF 271
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 54.2 bits (130), Expect = 6e-09
Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 1103 RVDAKNALEEYVYELRDGLANDK-ADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYN 1161
+ LE Y + ++ + ++K I D ++ + K +E +WL + Q + +
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKN-QTAEKEEFE 60
Query: 1162 DRLNSLRTVGDPVKMRAMEYAMRP 1185
+ L V +P+ + + A
Sbjct: 61 HQQKELEKVCNPIITKLYQSAGGM 84
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 57.6 bits (139), Expect = 1e-08
Identities = 41/375 (10%), Positives = 104/375 (27%), Gaps = 70/375 (18%)
Query: 561 SVIGIDFGTES-CYLSVAKSGGIETIVNDYSLRSTPS-CVAFSDKNRILGVA-----AKN 613
+G++ G + + V+ + + + R TP + +A
Sbjct: 14 EALGLEIGASALKLVEVSGNPPA---LKALASRPTPPGLLMEGMVAEPAALAQEIKELLL 70
Query: 614 QTVTNVKNTIFGF--KRLLGRTYDDPFV-QEELKSMPFQSLKQNDGSIGIKVNYLNKEHV 670
+ T + + ++ R P + +E++ ++ + + E V
Sbjct: 71 EARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAERY-------IPFPIDEVV 123
Query: 671 --FSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLR 728
F+P + + Q +V V A +L A AGL +
Sbjct: 124 LDFAPLTPLSE--------VQEGEQVQVM--VAAARQEAVAG----VLEALRGAGLVPVV 169
Query: 729 LINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDS 788
L + A + P+ +D G + + + K + +
Sbjct: 170 LDVKPFAGLYPLEARLAEEPDRV-----FLVLDIGAESTSLVL--LRGDKPLAVRVL--- 219
Query: 789 EIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIE 848
+ G++ + +A + D E++K+ +
Sbjct: 220 TLSGKDFTEAIARSFNLDL-------------------LAAEEVKRTYGMATLPTEDEEL 260
Query: 849 CFMDDKDVHAELKRNDLETL---CEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSR 905
D + + + + + L +L + ++GG S+
Sbjct: 261 LLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLE--FFRIQLEEASPEVGYLLGGGSK 318
Query: 906 IPAFKNVIESVFHKP 920
+ +++
Sbjct: 319 LRGLASLLTDTLGVN 333
Score = 55.2 bits (133), Expect = 7e-08
Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 40/236 (16%)
Query: 159 SENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYGIYKQDL 218
+ Q +V V A +L A AGL + L + A +
Sbjct: 135 VQEGEQVQVM--VAAARQEAVAG----VLEALRGAGLVPVVLDVKPFAGLYPLEARLAEE 188
Query: 219 PEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDF 278
P+ +D G + + + K + + + G++ + +A + D
Sbjct: 189 PDRV-----FLVLDIGAESTSLVL--LRGDKPLAVRVL---TLSGKDFTEAIARSFNLDL 238
Query: 279 VKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLET 338
E++K+ + D + +
Sbjct: 239 -------------------LAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDA 279
Query: 339 L---CEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKP 391
+ + + L +L + ++GG S++ +++
Sbjct: 280 IRPVLVELTQELRRSLE--FFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVN 333
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 40.4 bits (94), Expect = 0.003
Identities = 44/391 (11%), Positives = 111/391 (28%), Gaps = 81/391 (20%)
Query: 560 MSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAF--SDKNRILGVAAKNQTVT 617
+ V+ +DFG G ++ +ND PS + ++ N++ G V+
Sbjct: 4 VYVMALDFGN----------GFVKGKINDEKF-VIPSRIGRKTNENNQLKGFVDNKLDVS 52
Query: 618 NVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLT 677
+ G + +L + + + +
Sbjct: 53 EFI--------INGNNDEVLLFGNDLDKTT-----------NTGKDTASTNDRYDIKSFK 93
Query: 678 AMLFTKLKDISENEIQNKVH-DCVLAVPSYFTNNERKALLTAASIAGLNV---------- 726
++ + ++ + V+ +PS +++A +
Sbjct: 94 DLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTIN 153
Query: 727 ---LRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLS 783
++++ + T L + + + + +DFG + + +V
Sbjct: 154 VKGVKIVAQPMGTLLDLNMENGKVFKAFT-EGKYSVLDFGSGTTIIDT---YQNMKRVEE 209
Query: 784 NVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKL 843
G + K +A ++ ++ ++K + KL
Sbjct: 210 ESFVINKGTIDFYKRIASHV---------------SKKSEGASITPRMIEKGLEYKQCKL 254
Query: 844 PLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGS 903
D E + ++L E + EI + +N+I I + GG
Sbjct: 255 NQK-----TVIDFKDEFYKE-QDSLIEEVMSNFEITVGN--------INSIDRIIVTGGG 300
Query: 904 SRIPAFKNVIESVFHKPPSTTLNQDEAVSRG 934
+ I + + + + + RG
Sbjct: 301 ANI--HFDSLSHYYSDVFEKADDSQFSNVRG 329
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 38.5 bits (90), Expect = 0.013
Identities = 32/207 (15%), Positives = 67/207 (32%), Gaps = 39/207 (18%)
Query: 193 AGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKV 252
+ +L + +TA L +++ R V V+ GY+ + + G
Sbjct: 180 TVKSPFQLKSSLVSTAEGV------LTTPEKD-RGVVVVNLGYNFTGLIA--YKNGVPIK 230
Query: 253 LSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQM-SANS 311
+S V +G +++ K ++ + T + E+L +A
Sbjct: 231 ISYV---PVGMKHVIKDVSAVLDT---------SFEES----------ERLIITHGNAVY 268
Query: 312 NKLPLN-IECFMDDKDVHAELKRNDL----ETLCEHIFGRIEICLNKCIAE--SKLPVNA 364
N L I+ D + L I + + + A+ + +
Sbjct: 269 NDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGI 328
Query: 365 IHSIEIVGGSSRIPAFKNVIESVFHKP 391
+ + GG ++IP + VF P
Sbjct: 329 PGGVVLTGGGAKIPRINELATEVFKSP 355
Score = 38.5 bits (90), Expect = 0.013
Identities = 32/207 (15%), Positives = 67/207 (32%), Gaps = 39/207 (18%)
Query: 722 AGLNVLRLINETTATALAYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKV 781
+ +L + +TA L +++ R V V+ GY+ + + G
Sbjct: 180 TVKSPFQLKSSLVSTAEGV------LTTPEKD-RGVVVVNLGYNFTGLIA--YKNGVPIK 230
Query: 782 LSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQM-SANS 840
+S V +G +++ K ++ + T + E+L +A
Sbjct: 231 ISYV---PVGMKHVIKDVSAVLDT---------SFEES----------ERLIITHGNAVY 268
Query: 841 NKLPLN-IECFMDDKDVHAELKRNDL----ETLCEHIFGRIEICLNKCIAE--SKLPVNA 893
N L I+ D + L I + + + A+ + +
Sbjct: 269 NDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGI 328
Query: 894 IHSIEIVGGSSRIPAFKNVIESVFHKP 920
+ + GG ++IP + VF P
Sbjct: 329 PGGVVLTGGGAKIPRINELATEVFKSP 355
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 35.4 bits (81), Expect = 0.11
Identities = 17/147 (11%), Positives = 44/147 (29%), Gaps = 8/147 (5%)
Query: 243 AAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEI-E 301
F++ + NV + GG N+ + + L+ + +
Sbjct: 161 VLFLEQENFKNKNVAVIDFGGLNMG-----FSLYRNCVVNPSERFIEEHGVKDLIIRVGD 215
Query: 302 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 361
L + N + + T+ + + + K I +
Sbjct: 216 ALTDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFK 275
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVF 388
++ + S+ +GG+++ K I +
Sbjct: 276 LDQLDSLIFIGGTTQK--LKEQISKTY 300
Score = 35.4 bits (81), Expect = 0.11
Identities = 17/147 (11%), Positives = 44/147 (29%), Gaps = 8/147 (5%)
Query: 772 AAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEI-E 830
F++ + NV + GG N+ + + L+ + +
Sbjct: 161 VLFLEQENFKNKNVAVIDFGGLNMG-----FSLYRNCVVNPSERFIEEHGVKDLIIRVGD 215
Query: 831 KLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNKCIAESKLP 890
L + N + + T+ + + + K I +
Sbjct: 216 ALTDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFK 275
Query: 891 VNAIHSIEIVGGSSRIPAFKNVIESVF 917
++ + S+ +GG+++ K I +
Sbjct: 276 LDQLDSLIFIGGTTQK--LKEQISKTY 300
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli}
SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 33.3 bits (77), Expect = 0.35
Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 35/151 (23%)
Query: 1016 GQFIIKDIKPGPKGKPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFN 1075
+F ++ I P G ++V V+ G+ SV +A + E
Sbjct: 64 ARFALRGIPALPAGGAH-IRVTFQVDADGLLSV-TA---MEKSTGVE------------- 105
Query: 1076 HYLANIKVHDLF-----ELECKMQD------NDRQEKDRVDAKNALEEYVYELRDGLAND 1124
A+I+V + E+ ++D D + + + K + L LA D
Sbjct: 106 ---ASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAAD 162
Query: 1125 KADFITDSNRNVLNKKLDETENWLYEEGQDV 1155
A ++ + R V++ +G DV
Sbjct: 163 -AALLSAAERQVIDDAAAHLSEVA--QGDDV 190
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A
2bpr_A 1dg4_A
Length = 219
Score = 32.6 bits (75), Expect = 0.59
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 35/151 (23%)
Query: 1016 GQFIIKDIKPGPKGKPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFN 1075
GQF + I P P+G PQ ++V ++ G+ V SA +D KE
Sbjct: 67 GQFNLDGINPAPRGMPQ-IEVTFDIDADGILHV-SA---KDKNSGKE------------- 108
Query: 1076 HYLANIKVHD---LFELEC-KMQ-------DNDRQEKDRVDAKNALEEYVYELRDGLAND 1124
I + L E E KM + DR+ ++ V +N + ++ R + +
Sbjct: 109 ---QKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQV-EE 164
Query: 1125 KADFITDSNRNVLNKKLDETENWLYEEGQDV 1155
D + ++ + L E L +G+D
Sbjct: 165 AGDKLPADDKTAIESALTALETAL--KGEDK 193
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 30.8 bits (70), Expect = 1.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 1015 VGQFIIKDIKPGPKGKPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKE 1062
+GQF + I P P+G PQ ++V ++ G+ V++ +D KE
Sbjct: 82 LGQFNLDGINPAPRGMPQ-IEVTFDIDADGILHVSA----KDKNSGKE 124
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 1.8
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 1088 ELECKMQDNDRQEKD--RVDAKNALEEYVYELRDGLANDKADFITDSNRN 1135
L+ ++ + + R AK LEE+ + + +++ + +NR
Sbjct: 97 RLQ-ELDAASKVMEQEWREKAKKDLEEW-NQRQ----SEQVEKNKINNRI 140
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 31.1 bits (71), Expect = 2.7
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 23/96 (23%)
Query: 523 YTTTPTTAVCPIV--DMIVRQEDEKKRLMFSRYHNVQIIMSVIGIDFGTE---------- 570
Y T PT + ++ D I E + L F+ H + + I +D+G
Sbjct: 264 YCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLT 323
Query: 571 ---------SCYLSVAKSGGIETIV--NDYSLRSTP 595
S + G +V D+ +
Sbjct: 324 LHNAGHILGSAMAHLHIGDGQHNMVYTGDFKYEQSR 359
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 31.1 bits (71), Expect = 2.7
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 516 VRYGYGW--YTTTPTTAVCPIV--DMIVRQEDEKKRLMFSRYHNVQIIMSVIGIDFGTE 570
+YGY Y T PT + ++ D I E K++ + + + I +D+
Sbjct: 258 FKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEV 316
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 31.2 bits (71), Expect = 2.9
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 23/96 (23%)
Query: 523 YTTTPTTAVCPIV--DMIVRQEDEKKRLMFSRYHNVQIIMSVIGIDFGTE---------- 570
YTT PT + ++ D I Q+ + ++ ++I I +D+G
Sbjct: 279 YTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLT 338
Query: 571 ---------SCYLSVAKSGGIETIV--NDYSLRSTP 595
S + + G+ I D+ T
Sbjct: 339 LHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTR 374
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural
genomics, APC90014. 2, protein structure initiative;
1.85A {Caenorhabditis elegans}
Length = 152
Score = 29.9 bits (68), Expect = 2.9
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 47/115 (40%)
Query: 1016 GQFIIKDIKPGPKGKPQKVKVKMTVNVHGVFSVTSASMFEDL------------------ 1057
G F + I P P+G PQ ++V ++V+G+ V++ ED
Sbjct: 66 GNFDVTGIPPAPRGVPQ-IEVTFEIDVNGILHVSA----EDKGTGNKNKLTITNDHNRLS 120
Query: 1058 -EDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALE 1111
ED + M + + K +D+ +K++V+++N LE
Sbjct: 121 PEDIERMIN----------------------DAD-KFAADDQAQKEKVESRNELE 152
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 31.0 bits (71), Expect = 3.1
Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 516 VRYGY-GW-YTTTPTTAVCPIV--DMIVRQEDEKKRLMFSRYHNVQIIMSVIGIDFGTE 570
+ + G + T T A+ + D + ++++ + + + I+F
Sbjct: 85 QKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEV 143
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 30.4 bits (69), Expect = 4.3
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 365 IHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 412
I I ++GG ++ A + + S+ T DE V+ G A Q A
Sbjct: 425 ITRILLIGGGAKSEAIRTLAPSILGM-DVTRPATDEYVAIGAARQAAW 471
Score = 30.4 bits (69), Expect = 4.3
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 894 IHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCALQCAI 941
I I ++GG ++ A + + S+ T DE V+ G A Q A
Sbjct: 425 ITRILLIGGGAKSEAIRTLAPSILGM-DVTRPATDEYVAIGAARQAAW 471
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 30.6 bits (69), Expect = 4.3
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 362 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCAL----QCAILSPAV 417
+ + I + G + F + S+ T N VS G V
Sbjct: 385 IGSTGRILVEGRFAEADVFVRALASLRPDCAVYTANAHNDVSFGALRLIDPGLRPQGELV 444
Query: 418 KIRHFDVTDVQNY 430
+I D +
Sbjct: 445 RIEPLDTGSWADL 457
Score = 30.6 bits (69), Expect = 4.3
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 891 VNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLNQDEAVSRGCAL----QCAILSPAV 946
+ + I + G + F + S+ T N VS G V
Sbjct: 385 IGSTGRILVEGRFAEADVFVRALASLRPDCAVYTANAHNDVSFGALRLIDPGLRPQGELV 444
Query: 947 KIRHFDVTDVQNY 959
+I D +
Sbjct: 445 RIEPLDTGSWADL 457
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 4.4
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 33/59 (55%)
Query: 1228 KQHVKWIEEKVSKLKSLPKHENPPITCDQIREEKYKFEKSVWSVLNKPKPAPP-APNST 1285
KQ +K ++ + LK Y AP A +T
Sbjct: 19 KQALKKLQ---ASLK------------------LY-----------ADDSAPALAIKAT 45
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 29.5 bits (67), Expect = 4.8
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 32/111 (28%)
Query: 1016 GQFIIKDIKPGPKGKPQKVKVKMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFN 1075
GQF + I P P+G PQ ++V ++ +G+ V++ +D +E
Sbjct: 86 GQFTLIGIPPAPRGVPQ-IEVTFDIDANGIVHVSA----KDKGTGRE------------- 127
Query: 1076 HYLANIKVHD---LFELEC-KMQ-------DNDRQEKDRVDAKNALEEYVY 1115
I + L + + M + DR++K+RV+A N E ++
Sbjct: 128 ---QQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIH 175
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 30.3 bits (68), Expect = 4.8
Identities = 23/234 (9%), Positives = 74/234 (31%), Gaps = 39/234 (16%)
Query: 1054 FEDLEDQKEMFKCDLPYDSVFNHYLANI---KVHDLFELECKMQDNDRQEKDRVDAK-NA 1109
+E + +E F+ F NI +V + L ++ ++ + + +
Sbjct: 38 YEHVTMLQERFR-------EFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDG 90
Query: 1110 LEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYND------- 1162
L E +L + + + E + ++ + + + D
Sbjct: 91 LNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETL 150
Query: 1163 ----------------RLNSLRTVGDPVKMRAMEYAMRPNILEEYKHSVQSAKNIVDAAF 1206
++ L+ +++A + + +++ ++ V A +
Sbjct: 151 QRMHTTFEHDIQALGTQVRQLQEDAA--RLQAAYAGDKADDIQKRENEVLEAWKSLLD-- 206
Query: 1207 KGDDRFSHL-SKQDLSTVETAIKQHVKWIEEKVSKLKSLPKHENPPITCDQIRE 1259
+ R L D + ++ + W+E+ + ++++ K + +
Sbjct: 207 ACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNN 260
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 29.2 bits (65), Expect = 5.0
Identities = 12/92 (13%), Positives = 26/92 (28%)
Query: 1175 KMRAMEYAMRPNILEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWI 1234
K+ + + NI D FK LS + + + I
Sbjct: 40 KITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELI 99
Query: 1235 EEKVSKLKSLPKHENPPITCDQIREEKYKFEK 1266
++ S + + ++ ++ K E
Sbjct: 100 AAQIKAESSAKEIKELKSEINKYQKNIVKLET 131
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 30.0 bits (68), Expect = 5.6
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 46 RILGVAAKNQTVTNVKNTIFGFKRLLGR--TYDD-PFVQEEL-KSMPFQSLKQNDGSIGF 101
R++G+ ++ + +K +L + D V E+ S+ + +N
Sbjct: 170 RVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSL--NWMLENSIDGVL 227
Query: 102 WETY---DDPF---VQEELK 115
T+ D+ F V +LK
Sbjct: 228 DLTFSADDERFGEVVTVDLK 247
Score = 29.6 bits (67), Expect = 6.8
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 605 RILGVAAKNQTVTNVKNTIFGFKRLLGR--TYDD-PFVQEEL-KSMPFQSLKQNDGS 657
R++G+ ++ + +K +L + D V E+ S+ + +N
Sbjct: 170 RVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDMEGVDAEVYNSL--NWMLENSID 224
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70
protein, peptide-BIN domain, PSI-2, protein structure
initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 29.2 bits (66), Expect = 5.6
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1016 GQFIIKDIKPGPKGKPQKVKVKMTVNVHGVFSVT 1049
GQF + I P P+G PQ V+V ++ +G+ +V+
Sbjct: 66 GQFSLVGIPPAPRGVPQ-VEVTFDIDANGIVNVS 98
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1;
2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Length = 374
Score = 29.9 bits (68), Expect = 5.7
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 46 RILGVAAKNQTVTNVKNTIFGFKRLLGR--TYDD-PFVQEEL-KSMPFQSLKQNDGSIGF 101
R + +A + + ++ +KR+L + T D + E S+ ++ N+
Sbjct: 119 RFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSL--IWIRDNNIEECG 176
Query: 102 WE----TYDDPF---VQEELK 115
E + +LK
Sbjct: 177 LEMYFSVDMEILGKVTSHDLK 197
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A
{Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 29.1 bits (66), Expect = 5.9
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 47/115 (40%)
Query: 1016 GQFIIKDIKPGPKGKPQKVKVKMTVNVHGVFSVTSASMFEDL------------------ 1057
G+F + I P P+G PQ ++V ++ +G+ V++ D
Sbjct: 66 GKFELTGIPPAPRGVPQ-IEVTFALDANGILKVSA----TDKGTGKSESITITNDKGRLT 120
Query: 1058 -EDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDNDRQEKDRVDAKNALE 1111
E+ M + E E K D K +V+++N LE
Sbjct: 121 QEEIDRMVE----------------------EAE-KFASEDASIKAKVESRNKLE 152
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11,
peptide-binding domain, HS 2, protein structure
initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 29.1 bits (66), Expect = 6.1
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 1092 KMQDNDRQEKDRVDAKNALE 1111
+ + D ++++RV A+N LE
Sbjct: 133 QFEKEDGEQRERVQARNQLE 152
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 29.8 bits (68), Expect = 6.3
Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 25/107 (23%)
Query: 46 RILGVAAKNQTVTNVKNTIFGFKRLLGR--TYDD-PFVQEEL-KSMPFQSLKQNDGSIG- 100
+LG+A N + +V + +++L+G+ T+ D L +S+ + L + +G++
Sbjct: 100 IVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSL--KDLLEYEGNVED 157
Query: 101 -----FWETYDDPF---VQEELKSMPFQSLKQNDGSIGIKVNYLNKE 139
F + D F + +LK +G I + N++
Sbjct: 158 DMMITFQISQTDLFGNPMMYDLKE---------NGD-KIPITNENRK 194
>2dlb_A YOPT; SR412, X-RAY, NESG, structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, unknown function; 1.20A {Bacillus subtilis}
SCOP: b.174.1.1
Length = 80
Score = 27.4 bits (60), Expect = 6.7
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 307 MSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNK 353
M+ N + LN+E + +K E+ + +CE++ E+ K
Sbjct: 1 MAGYLNNIALNLEIVLKNKADSPEVSETLVTRICENLLLSKEVSFLK 47
Score = 27.4 bits (60), Expect = 6.7
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 836 MSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFGRIEICLNK 882
M+ N + LN+E + +K E+ + +CE++ E+ K
Sbjct: 1 MAGYLNNIALNLEIVLKNKADSPEVSETLVTRICENLLLSKEVSFLK 47
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA
damage, DNA recombinat repair, nucleotide-binding; HET:
DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Length = 400
Score = 29.3 bits (65), Expect = 8.3
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 121 SLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTN 180
+ + G K Y++ E F P +L ++ + ++ + N V +Y +
Sbjct: 203 QIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA-QRFGLDPDDALNN-----VAYARAYNAD 256
Query: 181 NERKALLTAASIAGLNVLRLINETTATALA 210
++ + L AA + + LI + AL
Sbjct: 257 HQLRLLDAAAQMMSESRFSLIVVDSVMALY 286
Score = 29.3 bits (65), Expect = 8.3
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 650 SLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTN 709
+ + G K Y++ E F P +L ++ + ++ + N V +Y +
Sbjct: 203 QIPLDIGGGEGKCLYIDTEGTFRPVRLVSIA-QRFGLDPDDALNN-----VAYARAYNAD 256
Query: 710 NERKALLTAASIAGLNVLRLINETTATALA 739
++ + L AA + + LI + AL
Sbjct: 257 HQLRLLDAAAQMMSESRFSLIVVDSVMALY 286
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,582,447
Number of extensions: 1210753
Number of successful extensions: 2978
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2881
Number of HSP's successfully gapped: 93
Length of query: 1304
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1199
Effective length of database: 3,770,088
Effective search space: 4520335512
Effective search space used: 4520335512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)