RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7140
(1304 letters)
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 200 bits (509), Expect = 2e-59
Identities = 80/184 (43%), Positives = 119/184 (64%), Gaps = 1/184 (0%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 621
+GID G+ + V + G +E I ND R+TPS VAF+D R++G AAKNQ N N
Sbjct: 3 AVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTN 62
Query: 622 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLF 681
T+F KRL+GR +DD VQ ++K PF + G ++V Y + F PE++++M+
Sbjct: 63 TVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 682 TKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAYG 741
TK+K+I+E + V + V+ VP+YF +++R+A A +IAGLNVLR+INE TA A+AYG
Sbjct: 122 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 181
Query: 742 IYKQ 745
+ K+
Sbjct: 182 LDKK 185
Score = 188 bits (479), Expect = 2e-55
Identities = 80/214 (37%), Positives = 119/214 (55%), Gaps = 31/214 (14%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILGVAAKNQTVTNVKN 62
+GID G+ + V + G +E I ND R+TPS VAF+D R++G AAKNQ N N
Sbjct: 3 AVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTN 62
Query: 63 TIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQSL 122
T+F KRL+GR +DD VQ ++K PF +
Sbjct: 63 TVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDA--------------------------- 95
Query: 123 KQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNE 182
G ++V Y + F PE++++M+ TK+K+I+E + V + V+ VP+YF +++
Sbjct: 96 ----GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQ 151
Query: 183 RKALLTAASIAGLNVLRLINETTATALAYGIYKQ 216
R+A A +IAGLNVLR+INE TA A+AYG+ K+
Sbjct: 152 RQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKK 185
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 193 bits (491), Expect = 4e-57
Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 5/184 (2%)
Query: 562 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTVTNVK 620
+IGID GT + +++ + N R+TPS +A++ L G AK Q VTN +
Sbjct: 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQ 61
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
NT+F KRL+GR + D VQ ++ MPF+ + ++G ++V K +P Q++A +
Sbjct: 62 NTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEV----KGQKMAPPQISAEV 117
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATALAY 740
K+K +E+ + V + V+ VP+YF + +R+A A IAGL V R+INE TA ALAY
Sbjct: 118 LKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAY 177
Query: 741 GIYK 744
G+ K
Sbjct: 178 GLDK 181
Score = 177 bits (450), Expect = 1e-51
Identities = 69/214 (32%), Positives = 107/214 (50%), Gaps = 35/214 (16%)
Query: 3 VIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRIL-GVAAKNQTVTNVK 61
+IGID GT + +++ + N R+TPS +A++ L G AK Q VTN +
Sbjct: 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQ 61
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGFWETYDDPFVQEELKSMPFQS 121
NT+F KRL+GR + D VQ ++ MPF+ + ++G
Sbjct: 62 NTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAW--------------------- 100
Query: 122 LKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNN 181
++V K +P Q++A + K+K +E+ + V + V+ VP+YF +
Sbjct: 101 ---------VEV----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDA 147
Query: 182 ERKALLTAASIAGLNVLRLINETTATALAYGIYK 215
+R+A A IAGL V R+INE TA ALAYG+ K
Sbjct: 148 QRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK 181
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 164 bits (416), Expect = 9e-47
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 9/197 (4%)
Query: 226 RYVAFVDFGYSALQVCIAAF----VKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKR 281
R +A D G + I + +VL+ D+ +GG + D L Y+ +F K
Sbjct: 3 RTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKD 62
Query: 282 YKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDD----KDVHAELKRNDLE 337
ID R + A RL EK K ++S+ + +N+ D K ++ ++ R LE
Sbjct: 63 QGIDLRNDPLAMQRLKEAAEKAKIELSSA-QQTDVNLPYITADATGPKHMNIKVTRAKLE 121
Query: 338 TLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLN 397
+L E + R L + ++ L V+ I + +VGG +R+P + + F K P +N
Sbjct: 122 SLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 181
Query: 398 QDEAVSRGCALQCAILS 414
DEAV+ G A+Q +L+
Sbjct: 182 PDEAVAIGAAVQGGVLT 198
Score = 164 bits (416), Expect = 9e-47
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 9/197 (4%)
Query: 755 RYVAFVDFGYSALQVCIAAF----VKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKR 810
R +A D G + I + +VL+ D+ +GG + D L Y+ +F K
Sbjct: 3 RTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKD 62
Query: 811 YKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDD----KDVHAELKRNDLE 866
ID R + A RL EK K ++S+ + +N+ D K ++ ++ R LE
Sbjct: 63 QGIDLRNDPLAMQRLKEAAEKAKIELSSA-QQTDVNLPYITADATGPKHMNIKVTRAKLE 121
Query: 867 TLCEHIFGRIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLN 926
+L E + R L + ++ L V+ I + +VGG +R+P + + F K P +N
Sbjct: 122 SLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 181
Query: 927 QDEAVSRGCALQCAILS 943
DEAV+ G A+Q +L+
Sbjct: 182 PDEAVAIGAAVQGGVLT 198
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 162 bits (411), Expect = 3e-46
Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Query: 226 RYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKID 285
R V D G V I G +V S D+ +GG + D + + +F +++K D
Sbjct: 5 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKD 64
Query: 286 PRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFG 345
N RA RL + E+ K+ +S+++ + + I+ + D + + R E L +F
Sbjct: 65 ISENKRAVRRLRTACERAKRTLSSST-QASIEIDSLYEGIDFYTSITRARFEELNADLFR 123
Query: 346 RIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSR 404
+ K + ++KL + IH I +VGGS+RIP + +++ F+ K + ++N DEAV+
Sbjct: 124 GTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAY 183
Query: 405 GCALQCAILS 414
G A+Q AILS
Sbjct: 184 GAAVQAAILS 193
Score = 162 bits (411), Expect = 3e-46
Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Query: 755 RYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVKRYKID 814
R V D G V I G +V S D+ +GG + D + + +F +++K D
Sbjct: 5 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKD 64
Query: 815 PRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLCEHIFG 874
N RA RL + E+ K+ +S+++ + + I+ + D + + R E L +F
Sbjct: 65 ISENKRAVRRLRTACERAKRTLSSST-QASIEIDSLYEGIDFYTSITRARFEELNADLFR 123
Query: 875 RIEICLNKCIAESKLPVNAIHSIEIVGGSSRIPAFKNVIESVFH-KPPSTTLNQDEAVSR 933
+ K + ++KL + IH I +VGGS+RIP + +++ F+ K + ++N DEAV+
Sbjct: 124 GTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAY 183
Query: 934 GCALQCAILS 943
G A+Q AILS
Sbjct: 184 GAAVQAAILS 193
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 71.7 bits (175), Expect = 3e-15
Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 48/178 (26%)
Query: 563 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN--RILGVAAKNQTVTNVK 620
IGID GT + + + G + PS +A + +
Sbjct: 3 IGIDLGTANTLVFLRGKGIVVNE---------PSVIAIDSTTGEILKVGLEAKNMIGKTP 53
Query: 621 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
TI + ++ V + + ++
Sbjct: 54 ATIKAIRP-------------------------------------MRDGVIADYTVALVM 76
Query: 681 FTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAGLNVLRLINETTATAL 738
+ ++ + V+ VP T+ ER+A+L A AG + + LI E A A+
Sbjct: 77 LRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI 134
Score = 64.0 bits (155), Expect = 2e-12
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 135 YLNKEHVFSPEQLTAMLFTKLKDISENEIQNKVHDCVLAVPSYFTNNERKALLTAASIAG 194
++ V + + ++ + ++ + V+ VP T+ ER+A+L A AG
Sbjct: 60 RPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAG 119
Query: 195 LNVLRLINETTATAL 209
+ + LI E A A+
Sbjct: 120 ASKVFLIEEPMAAAI 134
Score = 37.8 bits (87), Expect = 0.002
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 11/96 (11%)
Query: 4 IGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKN--RILGVAAKNQTVTNVK 61
IGID GT + + + G + PS +A + +
Sbjct: 3 IGIDLGTANTLVFLRGKGIVVNE---------PSVIAIDSTTGEILKVGLEAKNMIGKTP 53
Query: 62 NTIFGFKRLLGRTYDDPFVQEELKSMPFQSLKQNDG 97
TI + + D V + K
Sbjct: 54 ATIKAIRPMRDGVIADYTVALVMLRYFINKAKGGMN 89
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 67.6 bits (164), Expect = 3e-13
Identities = 21/191 (10%), Positives = 58/191 (30%), Gaps = 14/191 (7%)
Query: 221 DDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVK 280
+ + P VD G +V + G + I G +D+ + +Y+ +
Sbjct: 2 NVEEPSGNMVVDIGGGTTEVAV--ISLGSIVTWE---SIRIAGDEMDEAIVQYVRETYRV 56
Query: 281 RYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLC 340
+ I + ++ + + ++ LK ++
Sbjct: 57 AIGERTAERVKIEIGNVFPSKENDELET------TVSGIDLSTGLPRKLTLKGGEVREAL 110
Query: 341 EHIFGRIEICLNKCIAESKLPVNA---IHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLN 397
+ I + + ++ + + I + GG S + +++ +
Sbjct: 111 RSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEE 170
Query: 398 QDEAVSRGCAL 408
AV++G +
Sbjct: 171 PLTAVAKGAGM 181
Score = 67.6 bits (164), Expect = 3e-13
Identities = 21/191 (10%), Positives = 58/191 (30%), Gaps = 14/191 (7%)
Query: 750 DDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEIGGRNIDKILAEYISTDFVK 809
+ + P VD G +V + G + I G +D+ + +Y+ +
Sbjct: 2 NVEEPSGNMVVDIGGGTTEVAV--ISLGSIVTWE---SIRIAGDEMDEAIVQYVRETYRV 56
Query: 810 RYKIDPRTNARAYIRLLSEIEKLKKQMSANSNKLPLNIECFMDDKDVHAELKRNDLETLC 869
+ I + ++ + + ++ LK ++
Sbjct: 57 AIGERTAERVKIEIGNVFPSKENDELET------TVSGIDLSTGLPRKLTLKGGEVREAL 110
Query: 870 EHIFGRIEICLNKCIAESKLPVNA---IHSIEIVGGSSRIPAFKNVIESVFHKPPSTTLN 926
+ I + + ++ + + I + GG S + +++ +
Sbjct: 111 RSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEE 170
Query: 927 QDEAVSRGCAL 937
AV++G +
Sbjct: 171 PLTAVAKGAGM 181
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 60.2 bits (146), Expect = 7e-12
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 1106 AKNALEEYVYELRDGLANDK-ADFITDSNRNVLNKKLDETENWLYEEGQDVNRSVYNDRL 1164
+ LE Y + ++ + ++K I D ++ + K +E +WL ++ Q + + +
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWL-DKNQTAEKEEFEHQQ 60
Query: 1165 NSLRTVGDPVKMRAME 1180
L V +P+ + +
Sbjct: 61 KELEKVCNPIITKLYQ 76
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 45.7 bits (108), Expect = 5e-06
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 980 STQPVPFTKVLTFYRANVFDVQAYY---DCPVPYPTQFVGQFIIKDIKPGPKGKPQKVKV 1036
+T P T+ T Y N V + + +G+F + I P P+G PQ ++V
Sbjct: 34 TTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQ-IEV 92
Query: 1037 KMTVNVHGVFSVTSASMFEDLEDQKEMFKCDLPYDSVFNHYLANIKVHDLFELECKMQDN 1096
++ +G+ +V+ D KE + V + K +
Sbjct: 93 TFDIDANGILNVS----AVDKSTGKENKITITNDKGRLSKEDIERMVQEAE----KYKAE 144
Query: 1097 DRQEKDRVDAKNALE 1111
D +++D+V +KN+LE
Sbjct: 145 DEKQRDKVSSKNSLE 159
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 37.4 bits (87), Expect = 0.001
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 1095 DNDRQEKDRVDAKNALEEYVYELRDGLANDKADFITDSNRNVLNKKLDETENWLYEEGQD 1154
+ DR+ ++ V +N + ++ R + D + ++ + L E L +G+D
Sbjct: 18 EADRKFEELVQTRNQGDHLLHSTRKQVEEAG-DKLPADDKTAIESALTALETAL--KGED 74
Query: 1155 VN 1156
Sbjct: 75 KA 76
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 35.7 bits (82), Expect = 0.008
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 980 STQPVPFTKVLTFYRANV--FDVQAYY-DCPVPYPTQFVGQFIIKDIKPGPKGKPQKVKV 1036
+T P ++V + N + + + +GQF + I P P+G PQ ++V
Sbjct: 28 TTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQ-IEV 86
Query: 1037 KMTVNVHGVFSVTSASMFEDLEDQKE 1062
++ G+ V+ +D KE
Sbjct: 87 TFDIDADGILHVS----AKDKNSGKE 108
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3
{Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 114
Score = 32.7 bits (75), Expect = 0.063
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 549 MFSRYHNVQIIMSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVA--FSDKNRI 606
RY +Q I++++G+D ++ L V ++ I+ + S VA F+ +
Sbjct: 17 TLERYKELQDIIAILGMDELSDEDKLVVHRARRIQFFL------SQNFHVAEQFTGQPGS 70
Query: 607 LGVAAKNQTVTNVKNTIFGFKRLLGRTYDD 636
VK T+ GFK +L YD
Sbjct: 71 Y---------VPVKETVRGFKEILEGKYDH 91
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus
thermophilus [TaxId: 274]}
Length = 239
Score = 31.5 bits (70), Expect = 0.51
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 1182 AMRPNILEEY---KHSVQSAKNIVDAAFKGDDRFSHL 1215
A+RP L+EY + Q + ++AA + HL
Sbjct: 2 ALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHL 38
>d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 57
Score = 28.1 bits (63), Expect = 0.92
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 111 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKD 157
++EL+ M + +G + + N +VFS E+L +L K+ D
Sbjct: 17 KKELEDM------RKEGKGEVVCKWCNTRYVFSEEELEELLKFKVDD 57
Score = 28.1 bits (63), Expect = 0.92
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 640 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAMLFTKLKD 686
++EL+ M + +G + + N +VFS E+L +L K+ D
Sbjct: 17 KKELEDM------RKEGKGEVVCKWCNTRYVFSEEELEELLKFKVDD 57
>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 29.0 bits (65), Expect = 1.3
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 1071 DSVFNHYLANIKVHDL-------FELECKMQDNDRQEKDRVDAKNALEEYVYELRDGLAN 1123
+ + A+ V DL + ++ D E + +++ L+ + R
Sbjct: 7 EGWRTVFSADPNVVDLHKMGPHFYGFGSQLLHFDSPENADI-SQSLLQ--TFIGRFRRIM 63
Query: 1124 DKADFITDSNRNVLNKKLDETENWLYEEGQDVNRS 1158
D + + + + L +LDE E L++ GQ
Sbjct: 64 DSSQNAYNEDTSALVARLDEMERGLFQTGQKGLND 98
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus
subtilis [TaxId: 1423]}
Length = 57
Score = 27.3 bits (61), Expect = 1.4
Identities = 8/41 (19%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 111 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 151
++E++ M + DG ++ N++++F+ E+L +
Sbjct: 18 KKEIQDM-----IEEDGQAEAVCHFCNEKYLFTKEELEGLR 53
Score = 27.3 bits (61), Expect = 1.4
Identities = 8/41 (19%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 640 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
++E++ M + DG ++ N++++F+ E+L +
Sbjct: 18 KKEIQDM-----IEEDGQAEAVCHFCNEKYLFTKEELEGLR 53
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3
{Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Length = 108
Score = 28.5 bits (64), Expect = 1.7
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 549 MFSRYHNVQIIMSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVAFSDKNRILG 608
RY +Q I++++G+D +E L+VA++ IE + S P VA
Sbjct: 17 TLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFL------SQPFFVAEVFTGS--- 67
Query: 609 VAAKNQTVTNVKNTIFGFKRLLGRTYDD 636
+ V + TI GF+ +L D
Sbjct: 68 ---PGKYVG-LAETIRGFQLILSGELDS 91
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 62
Score = 26.9 bits (60), Expect = 2.6
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 111 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 151
EE+ S+ DG I + +Y ++F+ + +
Sbjct: 23 DEEVDSI-----LAEDGEIDMHCDYCGNHYLFNAMDIAEIR 58
Score = 26.9 bits (60), Expect = 2.6
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 640 QEELKSMPFQSLKQNDGSIGIKVNYLNKEHVFSPEQLTAML 680
EE+ S+ DG I + +Y ++F+ + +
Sbjct: 23 DEEVDSI-----LAEDGEIDMHCDYCGNHYLFNAMDIAEIR 58
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo
sapiens) [TaxId: 9606]}
Length = 78
Score = 27.2 bits (60), Expect = 2.9
Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 1188 LEEYKHSVQSAKNIVDAAFKGDDRFSHLSKQDLSTVETAIKQHVKWIEEKVSKLKSLPKH 1247
LE+Y + ++ F + ++ L + + H + I +++ + S K
Sbjct: 20 LEQY------LLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILS--KM 71
Query: 1248 ENPPI 1252
++ PI
Sbjct: 72 QDIPI 76
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis
[TaxId: 1423]}
Length = 363
Score = 29.3 bits (65), Expect = 3.2
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 203 ETTATAL-AYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEI 261
E++ + L Y I K + + Y + Y L + ++ ++C
Sbjct: 266 ESSGSCLYMYAIAKGIN-KGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDICVGTS 324
Query: 262 GGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQ 306
G Y+S +R D A+I ++E+E L +
Sbjct: 325 AGFY-----DYYVS---RERSTNDLHGAG-AFILAMTELEPLFRS 360
Score = 29.3 bits (65), Expect = 3.2
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 11/105 (10%)
Query: 732 ETTATAL-AYGIYKQDLPEDDQNPRYVAFVDFGYSALQVCIAAFVKGKLKVLSNVCDSEI 790
E++ + L Y I K + + Y + Y L + ++ ++C
Sbjct: 266 ESSGSCLYMYAIAKGIN-KGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDICVGTS 324
Query: 791 GGRNIDKILAEYISTDFVKRYKIDPRTNARAYIRLLSEIEKLKKQ 835
G Y+S +R D A+I ++E+E L +
Sbjct: 325 AGFY-----DYYVS---RERSTNDLHGAG-AFILAMTELEPLFRS 360
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase,
PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}
Length = 447
Score = 29.2 bits (65), Expect = 4.1
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 1207 KGDDRFSHLSKQDLSTVETAIKQHVKWIEEKVSKLKSL 1244
+RF+ L + + Q ++ + +L+ +
Sbjct: 344 MAQNRFAVLDRSFPEDAKRLRAQVAHELDVRFKELEHM 381
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 28.4 bits (62), Expect = 7.7
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 128 SIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQ 164
G + + E P+ +TA + L ISE + +
Sbjct: 552 DAGKALFHSLPEMATRPD-MTAHWESVLTQISEKQCR 587
Score = 28.4 bits (62), Expect = 7.7
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 657 SIGIKVNYLNKEHVFSPEQLTAMLFTKLKDISENEIQ 693
G + + E P+ +TA + L ISE + +
Sbjct: 552 DAGKALFHSLPEMATRPD-MTAHWESVLTQISEKQCR 587
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 118
Score = 27.0 bits (60), Expect = 8.2
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 547 RLMFSRYHNVQIIMSVIGIDFGTESCYLSVAKSGGIETIVNDYSLRSTPSCVA--FSDKN 604
+ + Y ++Q I++++G+D +E L+V+++ I+ S P VA F+
Sbjct: 18 QKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ------RFLSQPFQVAEVFTGH- 70
Query: 605 RILGVAAKNQTVTNVKNTIFGFKRLLGRTYDD 636
+ V +K TI GF+++L YD
Sbjct: 71 -------LGKLVP-LKETIKGFQQILAGEYDH 94
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding
(Amaranthus caudatus) [TaxId: 3567]}
Length = 153
Score = 27.2 bits (60), Expect = 8.2
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 595 PSCVAFSDKN--RILGVAAKNQTVTNVKNTIFGFKRLLGRTYDDPFVQEELKSMPFQSLK 652
P + N + L + N +G + DP Q E++ K
Sbjct: 4 PVIMCLKSNNHQKYLRYQSDNIQ-------QYGLLQFSADKILDPLAQFEVEPS-----K 51
Query: 653 QNDGSIGIKVNYLNK 667
DG + IK Y NK
Sbjct: 52 TYDGLVHIKSRYTNK 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,800,256
Number of extensions: 234051
Number of successful extensions: 696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 674
Number of HSP's successfully gapped: 44
Length of query: 1304
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1208
Effective length of database: 1,089,516
Effective search space: 1316135328
Effective search space used: 1316135328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)