Query psy7141
Match_columns 215
No_of_seqs 178 out of 1159
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 19:15:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_M Mitochondrial ribosomal 100.0 1.1E-41 3.8E-46 266.1 12.1 110 75-184 1-110 (110)
2 3r8s_S 50S ribosomal protein L 100.0 3.2E-40 1.1E-44 257.9 9.1 109 72-181 2-110 (110)
3 2zjr_P 50S ribosomal protein L 100.0 2.5E-39 8.6E-44 260.9 8.1 110 73-183 24-133 (134)
4 1i4j_A 50S ribosomal protein L 100.0 1.9E-38 6.4E-43 247.9 11.2 108 72-183 2-109 (110)
5 3bbo_U Ribosomal protein L22; 100.0 3.2E-39 1.1E-43 274.4 3.7 134 72-206 31-164 (199)
6 1vq8_R 50S ribosomal protein L 100.0 2.4E-36 8.3E-41 248.7 8.0 108 74-183 16-153 (155)
7 3j21_S 50S ribosomal protein L 100.0 1.3E-35 4.5E-40 244.3 6.7 107 74-182 19-154 (155)
8 2zkr_r 60S ribosomal protein L 100.0 6.7E-35 2.3E-39 245.9 10.3 112 74-187 16-159 (184)
9 3iz5_V 60S ribosomal protein L 100.0 2.8E-35 9.7E-40 245.7 6.5 112 74-187 16-160 (171)
10 3u5e_P L20A, YL17, 60S ribosom 100.0 7.6E-35 2.6E-39 245.5 8.8 113 74-188 16-160 (184)
11 4a17_Q RPL17, 60S ribosomal pr 100.0 2E-34 6.7E-39 242.6 10.9 112 74-187 18-161 (183)
12 3lvl_A NIFU-like protein; prot 64.3 19 0.00065 27.7 6.6 60 72-131 56-125 (129)
13 2z7e_A ISCU protein, NIFU-like 48.6 18 0.00061 29.0 4.1 63 71-133 54-127 (157)
14 4eb5_C NIFU protein (NIFU-1); 43.1 16 0.00055 29.2 3.0 60 72-131 50-120 (153)
15 3fau_A NEDD4-binding protein 2 42.3 38 0.0013 23.4 4.6 41 94-151 5-45 (82)
16 3gku_A Probable RNA-binding pr 40.0 46 0.0016 28.2 5.5 62 119-206 12-73 (225)
17 3lyv_A Ribosome-associated fac 33.9 16 0.00054 25.5 1.4 15 95-109 12-26 (66)
18 3ka5_A Ribosome-associated pro 30.3 19 0.00066 25.0 1.3 15 94-108 10-24 (65)
19 3k2t_A LMO2511 protein; lister 29.2 23 0.00078 23.8 1.5 15 94-108 10-24 (57)
20 3bge_A Predicted ATPase; struc 24.7 1.7E+02 0.0059 24.4 6.4 101 98-209 84-189 (201)
21 2d9i_A NEDD4-binding protein 2 21.2 35 0.0012 24.4 1.3 41 94-151 13-53 (96)
22 2qq4_A Iron-sulfur cluster bio 20.5 62 0.0021 24.9 2.7 37 71-107 55-91 (138)
23 1xjs_A NIFU-like protein; SR17 20.3 62 0.0021 25.2 2.7 37 71-107 57-93 (147)
No 1
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=100.00 E-value=1.1e-41 Score=266.14 Aligned_cols=110 Identities=58% Similarity=0.958 Sum_probs=106.8
Q ss_pred ccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCcccc
Q psy7141 75 HFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIK 154 (215)
Q Consensus 75 ~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lK 154 (215)
||.+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||++||++++|+|++|+|||++++||+|+++|
T Consensus 1 ~~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~f~pkkaa~~v~klL~sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~K 80 (110)
T 2ftc_M 1 HCRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLK 80 (110)
T ss_pred CCcccceeCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCCCccCeEEEEEEECCCCccc
Confidence 68999999999999999999999999999999999999999999999999999998899994499999999999999999
Q ss_pred cccccCCCCcccccccceeEEEEEeeCCCC
Q psy7141 155 GMRRHARVRMGRVEYKYCTYFVRLEEGKPP 184 (215)
Q Consensus 155 Rir~rArGRa~~i~k~~~HI~VvL~E~~~p 184 (215)
|++||||||+++|++++|||+|+|+|+++|
T Consensus 81 R~~prA~GRa~~i~k~~~HI~vvl~e~~~p 110 (110)
T 2ftc_M 81 RIRYHGRGRFGIMEKVYCHYFVKLVEGPPP 110 (110)
T ss_pred CCCCCCCCCCCccccCCccEEEEEEeCCCC
Confidence 999999999999999999999999999886
No 2
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=100.00 E-value=3.2e-40 Score=257.89 Aligned_cols=109 Identities=25% Similarity=0.258 Sum_probs=104.9
Q ss_pred eeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCc
Q psy7141 72 FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI 151 (215)
Q Consensus 72 ~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~ 151 (215)
|+.+..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||++||++++|+| +|+|||++++||+|+
T Consensus 2 e~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~f~pkkaa~~v~k~L~sA~aNAe~~~gld-~d~L~I~~~~v~~g~ 80 (110)
T 3r8s_S 2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGAD-IDDLKVTKIFVDEGP 80 (110)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHSSCC-TTSCEEEEEEEEEEE
T ss_pred eEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHhhCCHHHHHHHHHHHHHHHHhHHHhcCCC-hhheEEEEEEeCCCC
Confidence 4455699999999999999999999999999999999999999999999999999999988999 699999999999999
Q ss_pred ccccccccCCCCcccccccceeEEEEEeeC
Q psy7141 152 VIKGMRRHARVRMGRVEYKYCTYFVRLEEG 181 (215)
Q Consensus 152 ~lKRir~rArGRa~~i~k~~~HI~VvL~E~ 181 (215)
++||++||||||+++|++++|||+|+|+|+
T Consensus 81 ~~KR~~pRA~GR~~~i~k~~~HI~vvl~ek 110 (110)
T 3r8s_S 81 SMKRIMPRAKGRADRILKRTSHITVVVSDR 110 (110)
T ss_dssp EEEEEEECGGGCEEEEEEEEEEEEEEEECC
T ss_pred ccCCCCcCCCCCCCCcccCCccEEEEEecC
Confidence 999999999999999999999999999985
No 3
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=100.00 E-value=2.5e-39 Score=260.92 Aligned_cols=110 Identities=18% Similarity=0.246 Sum_probs=105.7
Q ss_pred eeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCcc
Q psy7141 73 VCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIV 152 (215)
Q Consensus 73 v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~ 152 (215)
+++..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||++||++++|+| +|+|||++++||+|++
T Consensus 24 akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~f~pkKaA~~v~klL~sA~aNAe~n~gld-~d~L~I~~i~V~~Gp~ 102 (134)
T 2zjr_P 24 GFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEML-EDRLFVKEAYVDAGPT 102 (134)
T ss_dssp TEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCC-GGGEEEEEEEEEECCC
T ss_pred EEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHCcHhHHHHHHHHHHHHHHhHHHhcCCC-hhheEEEEEEECCCcc
Confidence 455599999999999999999999999999999999999999999999999999999889999 6999999999999999
Q ss_pred cccccccCCCCcccccccceeEEEEEeeCCC
Q psy7141 153 IKGMRRHARVRMGRVEYKYCTYFVRLEEGKP 183 (215)
Q Consensus 153 lKRir~rArGRa~~i~k~~~HI~VvL~E~~~ 183 (215)
+||++||||||+++|++++|||+|+|+|++.
T Consensus 103 lKR~~pRA~GRa~~i~k~tsHItvvl~E~~~ 133 (134)
T 2zjr_P 103 LKRLIPRARGSANIIKKRTSHITIIVAEKGN 133 (134)
T ss_dssp EEEEEECSTTCEEEEEECCEEEEEEEEECCC
T ss_pred ccCCCCCCCCCCcccccCCceEEEEEEecCC
Confidence 9999999999999999999999999999753
No 4
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=100.00 E-value=1.9e-38 Score=247.89 Aligned_cols=108 Identities=26% Similarity=0.327 Sum_probs=103.1
Q ss_pred eeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCc
Q psy7141 72 FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI 151 (215)
Q Consensus 72 ~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~ 151 (215)
++.+..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||++||++++|+| +|+|||++++||+|+
T Consensus 2 ~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~~~pkkaa~~v~klL~sA~aNAe~n~gld-~d~L~I~~~~v~~g~ 80 (110)
T 1i4j_A 2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDAL-EDRLYVKAAYVDEGP 80 (110)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCC-GGGEEEEEEEEEEEE
T ss_pred eEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCC-hhheEEEEEEECCCC
Confidence 3456699999999999999999999999999999999999999999999999999999988999 699999999999999
Q ss_pred ccccccccCCCCcccccccceeEEEEEeeCCC
Q psy7141 152 VIKGMRRHARVRMGRVEYKYCTYFVRLEEGKP 183 (215)
Q Consensus 152 ~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~ 183 (215)
+ ++||||||+++|++++|||+|+|+|++.
T Consensus 81 ~---~~pRA~GRa~~i~k~~~HItvvl~e~~~ 109 (110)
T 1i4j_A 81 A---VLPRARGRADIIKKRTSHITVILGEKHG 109 (110)
T ss_dssp E---ECSCSSSCCCSCCEEEEEEEEEEEESSC
T ss_pred e---EeecCCCCCcccccCCeeEEEEEEecCC
Confidence 9 9999999999999999999999999753
No 5
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.2e-39 Score=274.39 Aligned_cols=134 Identities=23% Similarity=0.185 Sum_probs=114.6
Q ss_pred eeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCc
Q psy7141 72 FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI 151 (215)
Q Consensus 72 ~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~ 151 (215)
+++++.+++++||+|+++||++||||+|+||+.||+|+|+|+|..|+++|+||++||++++|+| +|+|||++|+||+|+
T Consensus 31 eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~f~PkKaA~~V~KlLkSA~ANAe~n~GLD-~d~L~I~~i~VnkGp 109 (199)
T 3bbo_U 31 EITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFN-KANLIISKAEVNKGI 109 (199)
T ss_dssp CBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGGGCCCTTHHHHHHHHHHHTTHHHHTSSCC-SSSCEEEECCCCBCC
T ss_pred EEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHHHCCHhHHHHHHHHHHHHHHhHHhccCCC-hhheEEEEEEECCCC
Confidence 4566699999999999999999999999999999999999999999999999999999889999 699999999999999
Q ss_pred ccccccccCCCCcccccccceeEEEEEeeCCCCCCCcCCCCCCchHHHHHHHHHh
Q psy7141 152 VIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEKLEEYLQSL 206 (215)
Q Consensus 152 ~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~y~~~~~~~~~~~~~~~~~~ 206 (215)
++||++||||||+++|++++|||+|+|+|++++.+|.....+.....+.+|+--|
T Consensus 110 ~lKR~~pRArGRa~~I~KrtsHItVVL~E~~~~~~yke~~~kl~~k~li~~~~~~ 164 (199)
T 3bbo_U 110 TLKKVKPRARGRSYMILRPTCHITIVLRDITHFDSYDKFLESLTPKKLIALLGLM 164 (199)
T ss_dssp CCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCCCCCCCCCCC-------------
T ss_pred cccCCCCCCCCCCCcccCCCccEEEEEeeCCchHHHHHHHHhhchhHHHHHHhhh
Confidence 9999999999999999999999999999999987765556677778888887544
No 6
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=100.00 E-value=2.4e-36 Score=248.72 Aligned_cols=108 Identities=17% Similarity=0.028 Sum_probs=102.7
Q ss_pred eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc------------------------------CcccchHHHHHHHHH
Q psy7141 74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY------------------------------VAKKGAPFIRDTILE 123 (215)
Q Consensus 74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f------------------------------~pKKaA~~I~kvL~s 123 (215)
.++.+++++||+|+++||++||||++++|+.+|+| +|+|+|+.|+++|+|
T Consensus 16 kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~~gr~PkKaa~~ilklL~s 95 (155)
T 1vq8_R 16 KAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLEN 95 (155)
T ss_dssp EEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHHHHHHHHHHHHH
T ss_pred EEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccccccccCCCcHHHHHHHHHHHHH
Confidence 44599999999999999999999999999999999 999999999999999
Q ss_pred HHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCC
Q psy7141 124 AQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKP 183 (215)
Q Consensus 124 A~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~ 183 (215)
|++||+++ ||| +|+|||+|++||+|+++||++|||+||+++|++++|||+|+|+|.+.
T Consensus 96 A~aNAe~k-gld-~d~L~I~~i~v~kg~~~kR~~pRA~GRa~~~~k~~~HI~vil~E~~~ 153 (155)
T 1vq8_R 96 AVGNADHQ-GFD-GEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEV 153 (155)
T ss_dssp HHHHHHHT-TSC-GGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC--
T ss_pred HHHHHHHc-CCC-hhheEEEEEEECCCccccCCCCCCCCCCCceeCCCccEEEEEEecCC
Confidence 99999975 999 69999999999999999999999999999999999999999999765
No 7
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-35 Score=244.34 Aligned_cols=107 Identities=21% Similarity=0.191 Sum_probs=103.3
Q ss_pred eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc-----------------------------CcccchHHHHHHHHHH
Q psy7141 74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY-----------------------------VAKKGAPFIRDTILEA 124 (215)
Q Consensus 74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f-----------------------------~pKKaA~~I~kvL~sA 124 (215)
.+..+++++||+|+++||++||||++++|+.+|+| +|+|+|+.|+++|+||
T Consensus 19 kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~gr~PkKaa~~ilklL~sA 98 (155)
T 3j21_S 19 RASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNV 98 (155)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCSSSCSBEECCHHHHHHHHHHHHHH
T ss_pred EEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccccCCCcCcCcHHHHHHHHHHHHHH
Confidence 45599999999999999999999999999999999 9999999999999999
Q ss_pred HHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCC
Q psy7141 125 QEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGK 182 (215)
Q Consensus 125 ~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~ 182 (215)
++||++ +||| +|+|||+||+||+|+++||++|||+||++++++++|||+|+|+|.+
T Consensus 99 ~aNAe~-kgld-~d~L~I~~i~vnkgp~~kR~~pRA~GR~~~~~k~~~HI~vil~E~~ 154 (155)
T 3j21_S 99 KNNAVQ-KGLD-PDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVVEEIR 154 (155)
T ss_dssp HHHHHH-HTCC-GGGCEEEEEEEEEEEEECCEEECSTTCEEECCEEEEEEEEEEECCC
T ss_pred HHHHHH-cCCC-hhheEEEEEEecCCCcccCCCCCCCCCCCceecCCccEEEEEEecc
Confidence 999996 8999 6999999999999999999999999999999999999999999975
No 8
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.7e-35 Score=245.89 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=101.0
Q ss_pred eccccccccCHHHHHHHHHHHcCCCHHHHHHHHc----------c----------------------CcccchHHHHHHH
Q psy7141 74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLG----------Y----------------------VAKKGAPFIRDTI 121 (215)
Q Consensus 74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~----------f----------------------~pKKaA~~I~kvL 121 (215)
.++.+++++||+|+++||++||||++++|+.+|+ | +|+|+|+.|+++|
T Consensus 16 kA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~GR~PkKaa~~ilklL 95 (184)
T 2zkr_r 16 KSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHML 95 (184)
T ss_dssp EEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHHHHHHHHH
T ss_pred EEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccccccccCCCcHHHHHHHHHHH
Confidence 4559999999999999999999999999999999 9 9999999999999
Q ss_pred HHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCC
Q psy7141 122 LEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNY 187 (215)
Q Consensus 122 ~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~ 187 (215)
+||.+||++ +||| +|+|||.||+||+|+++||++|||+||+++|++++|||+|+|+|.+..+++
T Consensus 96 ksA~aNAe~-kglD-~d~L~I~~i~Vnkg~~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k 159 (184)
T 2zkr_r 96 KNAESNAEL-KGLD-VDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159 (184)
T ss_dssp HHHHHHHHH-HTSC-TTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC------
T ss_pred HHHHHHHHH-cCCC-hhheEEEEEEECCCccCcCCCCCCCCCCCCccCCCceEEEEEEEcCccCCC
Confidence 999999996 5999 699999999999999999999999999999999999999999998876653
No 9
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=100.00 E-value=2.8e-35 Score=245.71 Aligned_cols=112 Identities=19% Similarity=0.141 Sum_probs=105.8
Q ss_pred eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc---------------------------------CcccchHHHHHH
Q psy7141 74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY---------------------------------VAKKGAPFIRDT 120 (215)
Q Consensus 74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f---------------------------------~pKKaA~~I~kv 120 (215)
.++.+++++||+|+++||++||||++++|+.+|+| +|+|+|+.|+++
T Consensus 16 kA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~~gr~PkKaa~~ilkl 95 (171)
T 3iz5_V 16 KAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDL 95 (171)
T ss_dssp EEEEEEEESCHHHHHHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCSCEECCHHHHHHHHHH
T ss_pred EEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccccccCCchHHHHHHHHH
Confidence 44499999999999999999999999999999996 699999999999
Q ss_pred HHHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCC
Q psy7141 121 ILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNY 187 (215)
Q Consensus 121 L~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~ 187 (215)
|+||++||++ +||| .|+|||+||+||+|+++||++||||||++++++++|||+|+|+|.+..+++
T Consensus 96 L~sA~aNAe~-kglD-~d~L~I~~i~vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~~~~v~k 160 (171)
T 3iz5_V 96 LKNAESNAEV-KGLD-VDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 160 (171)
T ss_dssp HHHHHHHHHH-HTCC-SSCCEEEEEEEEECCCBCCEEEETTTEEEECCBCEEEEEEEEETTHHHHTT
T ss_pred HHHHHHHHHH-cCCC-hhheEEEEEEeccCCcccCCCCCCCCCCCcccCCCccEEEEEeecCccCCC
Confidence 9999999996 7999 699999999999999999999999999999999999999999998876653
No 10
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=100.00 E-value=7.6e-35 Score=245.51 Aligned_cols=113 Identities=15% Similarity=0.082 Sum_probs=107.4
Q ss_pred eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc--------------------------------CcccchHHHHHHH
Q psy7141 74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY--------------------------------VAKKGAPFIRDTI 121 (215)
Q Consensus 74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f--------------------------------~pKKaA~~I~kvL 121 (215)
.++.+++++||+|+++||++||||++++|+.+|+| +|+|+|+.|+++|
T Consensus 16 kA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~~g~~~GR~PkKaa~~ilklL 95 (184)
T 3u5e_P 16 SARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLL 95 (184)
T ss_dssp EEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGGGTCSCEECCHHHHHHHHHHH
T ss_pred EEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhccCCccCCCchHHHHHHHHHH
Confidence 44599999999999999999999999999999994 7999999999999
Q ss_pred HHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCCc
Q psy7141 122 LEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYY 188 (215)
Q Consensus 122 ~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~y 188 (215)
+||++||++ +||| .|+|||+||+||+|+++||++|||+||+++|++++|||+|+|+|++..+++-
T Consensus 96 ksA~aNAe~-kgLD-~d~L~I~~i~Vnkgp~~kR~~pRA~GRa~p~~k~~~HI~vil~E~e~~v~k~ 160 (184)
T 3u5e_P 96 QNAAANAEA-KGLD-ATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAKA 160 (184)
T ss_dssp HHHHHHHHH-TTCC-TTTEEEEEEEEEECCCEEEEEEEGGGEEEEEEECCEEEEEEEEECCCCCCCC
T ss_pred HHHHHHHHH-cCCC-hhheEEEEEEECCCCcccCCCCCCCCCCCcccCCCccEEEEEeeccccCCCc
Confidence 999999996 8999 6999999999999999999999999999999999999999999999888653
No 11
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=100.00 E-value=2e-34 Score=242.60 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=104.5
Q ss_pred eccccccccCHHHHHHHHHHHcCCCHHHHHHHHcc--------------------------------CcccchHHHHHHH
Q psy7141 74 CHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGY--------------------------------VAKKGAPFIRDTI 121 (215)
Q Consensus 74 ~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~f--------------------------------~pKKaA~~I~kvL 121 (215)
.++.+++++||+|+++||++||||++++|+.+|+| +|+|+|+.|+++|
T Consensus 18 kA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~Gr~PkKaa~~ilklL 97 (183)
T 4a17_Q 18 KTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQGRWPVKSVKVILGLL 97 (183)
T ss_dssp EEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSBEECCHHHHHHHHHHH
T ss_pred EEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCccCcCcHHHHHHHHHHH
Confidence 44499999999999999999999999999999994 8999999999999
Q ss_pred HHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCC
Q psy7141 122 LEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNY 187 (215)
Q Consensus 122 ~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~ 187 (215)
+||.+||++ +||| .|+|||.||+||+|+++||++|||+||+++|++++|||+|+|+|.+..+++
T Consensus 98 ksA~aNAe~-kgLD-~d~L~I~hi~Vnkgp~~kR~~pRA~GRa~pi~k~~~HIeiil~Eke~~v~k 161 (183)
T 4a17_Q 98 DNLSANAQA-KSLN-TANLVIQHGQVNRAQKGRRRTYRAHGRINPYLNSGCHVEIFAQEVAAKVRK 161 (183)
T ss_dssp HHHHHHTTT-TTCC-STTEEEEEEEEEECCCEEEEEEETTTEEEEEEECCEEEEEEEEECCCC---
T ss_pred HHHHHHHHh-cCCC-hhheEEEEEEECCCCcccCcCccCCCCcCCccCCCCCEEEEEeeccccCcC
Confidence 999999985 6999 699999999999999999999999999999999999999999999987754
No 12
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=64.27 E-value=19 Score=27.65 Aligned_cols=60 Identities=13% Similarity=-0.023 Sum_probs=43.4
Q ss_pred eeeccccccccCHHHHHHHHHHHcCCCHHHHHHH--------HccCcc--cchHHHHHHHHHHHHHhHHh
Q psy7141 72 FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQ--------LGYVAK--KGAPFIRDTILEAQEMAVKD 131 (215)
Q Consensus 72 ~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~q--------L~f~pK--KaA~~I~kvL~sA~aNA~~~ 131 (215)
.+.+...-.-+|-==+-.++.+|.|++++||... |.|.|. +.|....++|+.|+.+.+..
T Consensus 56 d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i~~~L~l~p~r~~Ca~La~~Al~~Al~~y~~k 125 (129)
T 3lvl_A 56 DARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSK 125 (129)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666667889999999999999643 345553 44667789999999988753
No 13
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=48.58 E-value=18 Score=28.96 Aligned_cols=63 Identities=13% Similarity=-0.005 Sum_probs=46.1
Q ss_pred ceeeccccccccCHHHHHHHHHHHcCCCHHHHHHH--------Hc-cCc--ccchHHHHHHHHHHHHHhHHhCC
Q psy7141 71 AFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQ--------LG-YVA--KKGAPFIRDTILEAQEMAVKDHN 133 (215)
Q Consensus 71 ~~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~q--------L~-f~p--KKaA~~I~kvL~sA~aNA~~~~g 133 (215)
..+.+...-.-+|-==+-.++.+|.|++++||... |. +.| .+.|..-.++|+.|+.++....+
T Consensus 54 ~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~Lg~l~p~R~~Ca~La~~Al~~Al~~y~~k~~ 127 (157)
T 2z7e_A 54 EDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQG 127 (157)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHHTTT
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHhccHHHHhcccCcchhHhHHHHHHHHHHHHHHHHHhcC
Confidence 34455556666676677889999999999999864 31 333 46677788999999999876444
No 14
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=43.07 E-value=16 Score=29.24 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=42.8
Q ss_pred eeeccccccccCHHHHHHHHHHHcCCCHHHHHHH--------Hc-cCc--ccchHHHHHHHHHHHHHhHHh
Q psy7141 72 FVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQ--------LG-YVA--KKGAPFIRDTILEAQEMAVKD 131 (215)
Q Consensus 72 ~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~q--------L~-f~p--KKaA~~I~kvL~sA~aNA~~~ 131 (215)
.+.+...-.-+|-==+-.++.+|.|++++||... |. +.| .+.|..-.++|+.|+.+....
T Consensus 50 D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~~~~i~~~L~glpp~Ri~CA~La~~AL~~Al~~y~~k 120 (153)
T 4eb5_C 50 DIKFQTFGCAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFRK 120 (153)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCCHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 3445555556666667889999999999999843 21 233 345667789999999998753
No 15
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=42.28 E-value=38 Score=23.43 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=23.6
Q ss_pred HcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCc
Q psy7141 94 IRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI 151 (215)
Q Consensus 94 IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~ 151 (215)
+.||+++||+..|. +.|..|...++...|.. .+ .+..|+|.
T Consensus 5 LHGl~v~eA~~~l~-----------~~l~~~~~~~~~~~g~~---~v---~II~GkG~ 45 (82)
T 3fau_A 5 LHGLHVDEALEHLM-----------RVLEKKTEEFKQNGGKP---YL---SVITGRGN 45 (82)
T ss_dssp CTTSCHHHHHHHHH-----------HHHHHHHHHHHHHCCCC---EE---EEECCC--
T ss_pred CCCCcHHHHHHHHH-----------HHHHHHHHHhhccCCce---EE---EEEECCCC
Confidence 46999999997764 45556655554434432 22 34556664
No 16
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=39.96 E-value=46 Score=28.15 Aligned_cols=62 Identities=18% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEEEEeeCCCCCCCcCCCCCCchHH
Q psy7141 119 DTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGKPPKNYYWTGPQTGPEK 198 (215)
Q Consensus 119 kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~VvL~E~~~p~~~y~~~~~~~~~~ 198 (215)
+.+++|++.|....|+. .++|-|.=+.- |. +|-+| +-++...|.|.+.+. ..+.
T Consensus 12 kTveeAi~~Al~~L~v~-~d~l~~eVlee--g~---------kGffG-iG~k~a~V~v~~~~~-------------~~~~ 65 (225)
T 3gku_A 12 KTVEEAVTKALIELQTT-SDKLTYEIVEK--GS---------AGFLG-IGSKPAIIRAKRKET-------------LQDK 65 (225)
T ss_dssp SSHHHHHHHHHHHHTCC-GGGEEEEEEEC--CB---------CCC---CCCBCEEEEEEECCC-------------HHHH
T ss_pred CCHHHHHHHHHHHhCCC-HHHEEEEEEec--CC---------Ccccc-ccCceEEEEEEeccc-------------hHHH
Confidence 56788888888889999 68887754332 21 23334 446777788776532 2466
Q ss_pred HHHHHHHh
Q psy7141 199 LEEYLQSL 206 (215)
Q Consensus 199 ~~~~~~~~ 206 (215)
+.+||+.|
T Consensus 66 a~~~L~~l 73 (225)
T 3gku_A 66 AIEFLEQV 73 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77888765
No 17
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=33.90 E-value=16 Score=25.47 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=11.3
Q ss_pred cCCCHHHHHHHHccC
Q psy7141 95 RGMSVDQALIQLGYV 109 (215)
Q Consensus 95 RGm~vdeAl~qL~f~ 109 (215)
+=|+++||+.||+..
T Consensus 12 kpMsveEAv~qMel~ 26 (66)
T 3lyv_A 12 KPMDVEEARLQMELL 26 (66)
T ss_dssp CEECHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHcC
Confidence 447889999888753
No 18
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=30.30 E-value=19 Score=24.99 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=11.7
Q ss_pred HcCCCHHHHHHHHcc
Q psy7141 94 IRGMSVDQALIQLGY 108 (215)
Q Consensus 94 IRGm~vdeAl~qL~f 108 (215)
++=|+++||+.||+.
T Consensus 10 ~kpMsveEAv~qmel 24 (65)
T 3ka5_A 10 IKPMSEEEAVLEMEL 24 (65)
T ss_dssp CSCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 345899999999864
No 19
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=29.15 E-value=23 Score=23.84 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=11.8
Q ss_pred HcCCCHHHHHHHHcc
Q psy7141 94 IRGMSVDQALIQLGY 108 (215)
Q Consensus 94 IRGm~vdeAl~qL~f 108 (215)
++=|+++||+.||+.
T Consensus 10 ~kpmsveEAv~qmel 24 (57)
T 3k2t_A 10 LKPMDSEEAVLQMNL 24 (57)
T ss_dssp -CCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 456899999999874
No 20
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.71 E-value=1.7e+02 Score=24.42 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=46.3
Q ss_pred CHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCcccccccccCCCCcccccccceeEEE-
Q psy7141 98 SVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFV- 176 (215)
Q Consensus 98 ~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~~lKRir~rArGRa~~i~k~~~HI~V- 176 (215)
.+.+|+.+|.-+||.-| +...+..|++.+++....++|..|. .++ .|...--++|....+-..+-+=+|
T Consensus 84 ~LaqaviyLA~aPKSNs--~y~A~~~A~~~v~~~~~~~VP~hLr-------na~-t~~~k~lG~g~gY~YpHd~p~~~v~ 153 (201)
T 3bge_A 84 AIAQAIIYLSVAPKSNA--VYTAFNTAKQQAKDLPDYDVPPHLR-------NAP-TNLMKELGYGAEYRYAHDEPNAYAA 153 (201)
T ss_dssp HHHHHHHHHHHSCCCCH--HHHHHHHHHHHHHHSCCCCCCGGGS-------SSC-CCC---------------------C
T ss_pred HHHHHHHHHHcCCccHH--HHHHHHHHHHHHHhcCCCCCChhhc-------CCC-ccchhhcCCCCCCcCCCcCCCCccc
Confidence 35578888888999665 3567778888877644455554332 111 122222223333222222222222
Q ss_pred ---EEeeCCCCCCCcCCCCCCc-hHHHHHHHHHhccc
Q psy7141 177 ---RLEEGKPPKNYYWTGPQTG-PEKLEEYLQSLRYR 209 (215)
Q Consensus 177 ---vL~E~~~p~~~y~~~~~~~-~~~~~~~~~~~r~r 209 (215)
-|-|+-....+|.+ ...| +..+.++++.+|+.
T Consensus 154 ~Q~YlP~~l~~~~fY~p-~~~g~E~~i~~~l~~~~~~ 189 (201)
T 3bge_A 154 GENYFPPELKDTQYYFP-TNRGMEIQIKEKLERLREQ 189 (201)
T ss_dssp CCCSSCGGGTTCCCCCC-CSSTTHHHHHHHHHHHC--
T ss_pred cccCCCccCCCCcccCC-CCCchHHHHHHHHHHHHHh
Confidence 12222233456653 3345 56899999998864
No 21
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=21.20 E-value=35 Score=24.37 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=24.1
Q ss_pred HcCCCHHHHHHHHccCcccchHHHHHHHHHHHHHhHHhCCCCCCCCEEEEEEEecCCc
Q psy7141 94 IRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI 151 (215)
Q Consensus 94 IRGm~vdeAl~qL~f~pKKaA~~I~kvL~sA~aNA~~~~gld~~~~L~I~e~~v~kG~ 151 (215)
+.||+++||+..|. +.|.+|...+....|+. . ..|..++|.
T Consensus 13 LHGl~v~eA~~~L~-----------~~L~~~~~~~~~~~g~~---~---v~IIhGkG~ 53 (96)
T 2d9i_A 13 LHGLHVDEALEHLM-----------RVLEKKTEEFKQNGGKP---Y---LSVITGRGN 53 (96)
T ss_dssp CTTSCHHHHHHHHH-----------HHHHHHHHHHHHTTCCS---E---EEEECCCSG
T ss_pred CCCCCHHHHHHHHH-----------HHHHHHHHHHHhhCCCe---E---EEEEECcCC
Confidence 46999999997763 45556654433223432 2 244556774
No 22
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=20.52 E-value=62 Score=24.94 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=28.4
Q ss_pred ceeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHc
Q psy7141 71 AFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLG 107 (215)
Q Consensus 71 ~~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~ 107 (215)
..+.+...-.-+|-==+-.++.+|.|++++||.....
T Consensus 55 ~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (138)
T 2qq4_A 55 ADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSR 91 (138)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3445555666667777788999999999999998763
No 23
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=20.32 E-value=62 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.020 Sum_probs=28.6
Q ss_pred ceeeccccccccCHHHHHHHHHHHcCCCHHHHHHHHc
Q psy7141 71 AFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLG 107 (215)
Q Consensus 71 ~~v~~~~~~ir~SpkK~~~va~~IRGm~vdeAl~qL~ 107 (215)
..+.+...-.-+|-==+-.++.+|.|++++||.....
T Consensus 57 ~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 57 EDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3445556666677777888999999999999998753
Done!