RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7141
(215 letters)
>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e. L22 (L17 in
eukaryotes) is a core protein of the large ribosomal
subunit. It is the only ribosomal protein that
interacts with all six domains of 23S rRNA, and is one
of the proteins important for directing the proper
folding and stabilizing the conformation of 23S rRNA.
L22 is the largest protein contributor to the surface of
the polypeptide exit channel, the tunnel through which
the polypeptide product passes. L22 is also one of six
proteins located at the putative translocon binding site
on the exterior surface of the ribosome.
Length = 105
Score = 93.7 bits (234), Expect = 5e-25
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 80 IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
++ SP K +A LIRGMSVD+AL QL +V KK A I + A+ A + +
Sbjct: 8 LRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANAENNGLDD-PDK 66
Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRL 178
L++ V K +K R AR R + + C V L
Sbjct: 67 LYIKHIQVNKGPTLKRRRPRARGRANPIRKRTCHITVVL 105
>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e. This family
includes L22 from prokaryotes and chloroplasts and L17
from eukaryotes.
Length = 105
Score = 93.7 bits (234), Expect = 5e-25
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 79 KIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKS 138
I+ SP K +A LIRG SV++AL L +V KK A I + A A + ++
Sbjct: 5 YIRISPKKARLVADLIRGKSVEEALAILEFVPKKAAKIILKLLKSAVANAENNKGLD-PD 63
Query: 139 NLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEE 180
NL++ E FV K +K R AR R + + + L E
Sbjct: 64 NLYIKEIFVDKGPTLKRFRPRARGRATPIRKRTSHITIVLSE 105
>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal
structure and biogenesis].
Length = 120
Score = 63.8 bits (156), Expect = 2e-13
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 76 FKEKIKY---SPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDH 132
K K +Y SP K +A LIRG V +AL L +V KK A ++ + A A +
Sbjct: 11 AKAKARYLRISPKKARLVADLIRGKKVAEALAILEFVPKKAAKLVKKVLESAIANAENNK 70
Query: 133 NVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEE 180
++ L V+ V K V+K AR R R+ + V + E
Sbjct: 71 GLD-PDKLVVSHIAVDKGPVLKRFMPRARGRATRINKRTSHITVVVRE 117
>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed.
Length = 112
Score = 54.3 bits (132), Expect = 6e-10
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 80 IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
++ SP K +A LIRG V++AL L + KK A ++ + A A +H ++ N
Sbjct: 10 VRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAENNHGLD-IDN 68
Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEGK 182
L V E++V + +K R AR R R+ + V + E +
Sbjct: 69 LVVKEAYVDEGPTLKRFRPRARGRASRIRKRTSHITVVVAEKE 111
>gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type. This
model decribes bacterial and chloroplast ribosomal
protein L22 [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 103
Score = 42.9 bits (101), Expect = 9e-06
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 80 IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFK-S 138
++ SP K +A LIRG SV QAL L + KK AP I+ + A +A +HN
Sbjct: 6 VRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASA--IANAEHNYGLDAD 63
Query: 139 NLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFV 176
NL V FV + +K +R A+ R R+ + V
Sbjct: 64 NLVVVTIFVDEGPTLKRIRPRAKGRASRIRKRTSHITV 101
>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22.
Length = 117
Score = 32.2 bits (74), Expect = 0.056
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 80 IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEF-KS 138
I+ S K + IRG S ++AL+ L ++ + I + A A HN+ K+
Sbjct: 17 IRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSAAANA--SHNMGLNKA 74
Query: 139 NLWVAESFVLKDIVIKGMRRHARVR 163
NL+++++ V + +K R A+ R
Sbjct: 75 NLFISKAEVDEGPTLKRFRPRAQGR 99
>gnl|CDD|183679 PRK12682, PRK12682, transcriptional regulator CysB-like protein;
Reviewed.
Length = 309
Score = 32.7 bits (75), Expect = 0.10
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 3 QLRILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEIE----VPRFTRH 54
QLR + V LN L A LHTSQ + K++ E+E + F RH
Sbjct: 5 QLRFVREAVRRNLN--------LTEAAKALHTSQPGVSKAIIELEEELGIEIFIRH 52
>gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Validated.
Length = 325
Score = 32.0 bits (74), Expect = 0.21
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 93 LIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVE 135
L +G S+++AL ++G VA +G T E+A K VE
Sbjct: 262 LGQGKSLEEALAEIGMVA-EGVR----TAKAVYELA-KKLGVE 298
>gnl|CDD|237173 PRK12684, PRK12684, transcriptional regulator CysB-like protein;
Reviewed.
Length = 313
Score = 29.2 bits (66), Expect = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 3 QLRILSNCVLHQLNSNGKLFLPLITTASD-LHTSQSCLKKSLAEIE----VPRFTRH 54
QLR + V N +T A+ L+TSQ + K++ E+E V FTRH
Sbjct: 5 QLRFVREAVRQNFN---------LTEAAKALYTSQPGVSKAIIELEDELGVEIFTRH 52
>gnl|CDD|173931 cd08172, GlyDH-like1, Glycerol dehydrogenases-like. Glycerol
dehydrogenases-like. The proteins in this family have
not been characterized, but they show sequence homology
with glycerol dehydrogenase. Glycerol dehydrogenases
(GlyDH) is a key enzyme in the glycerol dissimilation
pathway. In anaerobic conditions, many microorganisms
utilize glycerol as a source of carbon through coupled
oxidative and reductive pathways. One of the pathways
involves the oxidation of glycerol to dihydroxyacetone
with the reduction of NAD+ to NADH catalyzed by glycerol
dehydrogenases. Dihydroxyacetone is then phosphorylated
by dihydroxyacetone kinase and enters the glycolytic
pathway for further degradation. The activity of GlyDH
is zinc-dependent. The zinc ion plays a role in
stabilizing an alkoxide intermediate at the active site.
Length = 347
Score = 29.1 bits (66), Expect = 1.9
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 88 WYIA-CLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHN 133
WY A + R + +QL A A RD +L E A++D
Sbjct: 168 WYEASAISRSLDSLDLFVQLALQA---AKLCRDLLLRDSEQALQDMA 211
>gnl|CDD|216640 pfam01671, ASFV_360, African swine fever virus multigene family 360
protein. The multigene family 360 protein are found
within the African swine fever virus (ASF) genome which
consist of dsDNA and has similar structural features to
the poxyviruses. The biological function of this family
is not known. Although a member from African swine fever
virus is a major structural protein.
Length = 215
Score = 27.7 bits (62), Expect = 4.4
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 76 FKEKIKYSPDKMWYIACL 93
KEKI+ ++M +AC+
Sbjct: 133 EKEKIRMDINEMMKLACM 150
>gnl|CDD|224442 COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs
[DNA replication, recombination, and repair].
Length = 192
Score = 27.1 bits (60), Expect = 5.8
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 92 CLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDI 151
+ G V+ L++ G EA+E A K + +W S
Sbjct: 125 VTVDGTDVNLELVKEGLARVYYNSEYGGEYAEAEEEARKR-----RLGIW---SDDNNGP 176
Query: 152 VIKGMRRHARVRM 164
+G R R
Sbjct: 177 DPRGFSRDVRGVG 189
>gnl|CDD|188347 TIGR03595, Obg_CgtA_exten, Obg family GTPase CgtA, C-terminal
extension. CgtA (see model TIGR02729) is a broadly
conserved member of the obg family of GTPases associated
with ribosome maturation. This model represents a unique
C-terminal domain found in some but not all sequences of
CgtA. This region is preceded, and may be followed, by a
region of low-complexity sequence.
Length = 69
Score = 25.5 bits (57), Expect = 5.8
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 83 SPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPF-IRDTILE 123
+ + + A ++ + V+ AL + G AK G I D E
Sbjct: 29 NDENLRRFARKLKKLGVEDALRKAG--AKDGDTVRIGDFEFE 68
>gnl|CDD|188808 cd09424, LIM2_FHL1, The second LIM domain of Four and a half LIM
domains protein 1 (FHL1). The second LIM domain of Four
and a half LIM domains protein 1 (FHL1): FHL1 is
heavily expressed in skeletal and cardiac muscles. It
plays important roles in muscle growth, differentiation,
and sarcomere assembly by acting as a modulator of
transcription factors. Defects in FHL1 gene are
responsible for a number of Muscular dystrophy-like
muscle disorders. It has been detected that FHL1 binds
to Myosin-binding protein C, regulating myosin filament
formation and sarcomere assembly. LIM domains are 50-60
amino acids in size and share two characteristic zinc
finger motifs. The two zinc fingers contain eight
conserved residues, mostly cysteines and histidines,
which coordinately bond to two zinc atoms. LIM domains
function as adaptors or scaffolds to support the
assembly of multimeric protein complexes.
Length = 58
Score = 25.5 bits (56), Expect = 6.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 131 DHNVEFKSNLWVAESFV 147
D NVE+K N+W + F
Sbjct: 12 DQNVEYKGNVWHKDCFT 28
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 27.4 bits (62), Expect = 7.0
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 82 YSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTI 121
+ + A +R M VD AL + G AK G DT+
Sbjct: 381 NRDESLRRFARQLRKMGVDDALREAG--AKDG-----DTV 413
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.
Length = 412
Score = 27.0 bits (61), Expect = 8.4
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 62 QQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIR--GMSVDQALI------QLGYVAKKG 113
++ GEE +V E + +A +R G+ V+ Q Y K G
Sbjct: 312 EELGEEPVDVYVVPLGEDAE---LAALKLAEKLRAAGIRVELDYGGRKLKKQFKYADKSG 368
Query: 114 APF---IRDTILEAQEMAVKD 131
A F + + L + VKD
Sbjct: 369 ARFVLILGEDELANGTVTVKD 389
>gnl|CDD|235078 PRK02858, PRK02858, germination protease; Provisional.
Length = 369
Score = 26.9 bits (60), Expect = 9.5
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 117 IR-DTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMR-------RHARVRMGRVE 168
+R D +EA EMA+++ E + + + ++K+ +G++ +G+
Sbjct: 12 VRTDLAVEAHEMALQERQEEQQKGI---QGVIVKEREEEGIKITKVTIDEEGAKSIGKKP 68
Query: 169 YKYCT 173
+Y T
Sbjct: 69 GRYLT 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,036,580
Number of extensions: 1036015
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 24
Length of query: 215
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 122
Effective length of database: 6,812,680
Effective search space: 831146960
Effective search space used: 831146960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)