RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7141
         (215 letters)



>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli
           [TaxId: 562]}
          Length = 106

 Score = 86.0 bits (213), Expect = 1e-22
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
            + S  K+  +A LIRG  V QAL  L Y  KK A  ++  +  A   A  +   +   +
Sbjct: 6   ARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGAD-IDD 64

Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEE 180
           L V + FV +   +K +   A+ R  R+  +     V + +
Sbjct: 65  LKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 105


>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 127

 Score = 77.5 bits (191), Expect = 4e-19
 Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 62  QQEGEERRPAFVCHFKEKIKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTI 121
           +Q+ + R+P F     + ++ SP K+  +  +IRG SV  A   L ++ +  +  +   +
Sbjct: 8   KQQVKLRKPGFAVA--KYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVL 65

Query: 122 LEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEEG 181
             A+  A+ +  +  +  L+V E++V     +K +   AR     ++ +     + + E 
Sbjct: 66  NSAKANALHNDEML-EDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEK 124

Query: 182 K 182
            
Sbjct: 125 G 125


>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
           subsp. Thermus thermophilus [TaxId: 271]}
          Length = 110

 Score = 74.9 bits (184), Expect = 3e-18
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKKGAPFIRDTILEAQEMAVKDHNVEFKSN 139
           ++ SP K+  +  LIRG S+++A   L Y  K+GA F+   +  A   AV +H+   +  
Sbjct: 10  VRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDA-LEDR 68

Query: 140 LWVAESFVLKDIVIKGMRRHARVRMGRVEYKYCTYFVRLEE 180
           L+V  ++V +   +      AR R   ++ +     V L E
Sbjct: 69  LYVKAAYVDEGPAVL---PRARGRADIIKKRTSHITVILGE 106


>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 61.5 bits (149), Expect = 7e-13
 Identities = 20/131 (15%), Positives = 33/131 (25%), Gaps = 32/131 (24%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLGYVAKK--------------------------- 112
            + S      IA  I+G +  +A+  L  V +                            
Sbjct: 21  RQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRY 80

Query: 113 ---GAPFIRDTILEAQEMAVKDHNVEFKSNLWVAESFVLKDIVIKGMRRHARVRMGRVEY 169
               +    D +  A   A  DH       + +      K    +G +  A  R      
Sbjct: 81  PEKASKAFLDLLENAVGNA--DHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNS 138

Query: 170 KYCTYFVRLEE 180
                 + LEE
Sbjct: 139 PQVDVELILEE 149


>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId:
           51453]}
          Length = 344

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 4/22 (18%), Positives = 7/22 (31%)

Query: 186 NYYWTGPQTGPEKLEEYLQSLR 207
           N YW    T    ++     + 
Sbjct: 25  NCYWCSFLTNHADVDSTFSHIS 46


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 26.3 bits (57), Expect = 3.4
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 12/56 (21%)

Query: 80  IKYSPDKMWYIACLIRGMSVDQALIQLG--YVAKKGAPFIRDTIL---EAQEMAVK 130
            KY+ D  WY+  ++        LI++   YV+++    +   ++   + Q  A K
Sbjct: 425 EKYAVDYTWYVDTILN-------LIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAK 473


>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
           (aminotransferase) {Synechococcus sp., strain GR6
           [TaxId: 1131]}
          Length = 427

 Score = 25.6 bits (55), Expect = 5.0
 Identities = 6/45 (13%), Positives = 16/45 (35%)

Query: 2   FQLRILSNCVLHQLNSNGKLFLPLITTASDLHTSQSCLKKSLAEI 46
           F   +L   +    +     F  L  T  D+  + +  +  ++ +
Sbjct: 383 FHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427


>d1rf8b_ a.210.1.1 (B:) Eukaryotic initiation factor 4f subunit
          eIF4g, eIF4e-binding domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 100

 Score = 24.4 bits (53), Expect = 5.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 70 PAFVCHFKEKIKYSPDKMW 88
          P F+  FK+K+    D  W
Sbjct: 66 PTFLLQFKDKLNVKADAEW 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 833,720
Number of extensions: 38856
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 9
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)