BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7142
         (1309 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QAT|A Chain A, Crystal Structure Of
            Acyl-Carrier-Protein-S-Malonyltransferase From Bartonella
            Henselae
 pdb|3QAT|B Chain B, Crystal Structure Of
            Acyl-Carrier-Protein-S-Malonyltransferase From Bartonella
            Henselae
          Length = 318

 Score = 32.0 bits (71), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 11/100 (11%)

Query: 1028 FEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKK 1087
            FEE D  +   + D + +G   VL  T +   A++A+S         +E+L   LN  KK
Sbjct: 36   FEEVDDALSEKLSDIIFEGPADVLTLTANAQPALMAVSMAVIRV---MEQL--GLNVEKK 90

Query: 1088 QRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHG 1127
             +F A H    +LG   ++   G   FS  DT       G
Sbjct: 91   VKFVAGH----SLGEYSALCAAG--TFSLTDTARLLRIRG 124


>pdb|1QJL|A Chain A, Metallothionein Mta From Sea Urchin (Beta Domain)
          Length = 28

 Score = 30.8 bits (68), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 1265 CKCKTGCSSTSNCSCKRSNVDC 1286
            CKC  GC   S CSC   N  C
Sbjct: 7    CKCANGCKCGSGCSCTEGNCAC 28


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,837,982
Number of Sequences: 62578
Number of extensions: 1423980
Number of successful extensions: 3449
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3441
Number of HSP's gapped (non-prelim): 13
length of query: 1309
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1199
effective length of database: 8,089,757
effective search space: 9699618643
effective search space used: 9699618643
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)