Query psy7142
Match_columns 1309
No_of_seqs 145 out of 152
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 19:18:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a76_A Flap endonuclease-1 pro 97.1 0.00078 2.7E-08 76.9 8.7 98 1030-1145 152-251 (326)
2 2izo_A FEN1, flap structure-sp 97.0 0.00072 2.5E-08 77.8 6.6 101 1030-1147 149-263 (346)
3 3qe9_Y Exonuclease 1; exonucle 96.9 0.0029 9.9E-08 73.2 10.5 102 1029-1146 149-255 (352)
4 1rxw_A Flap structure-specific 96.8 0.0008 2.7E-08 77.1 5.3 96 1044-1148 161-265 (336)
5 1ul1_X Flap endonuclease-1; pr 96.8 0.0013 4.6E-08 76.5 7.1 103 1030-1149 157-263 (379)
6 1b43_A Protein (FEN-1); nuclea 96.7 0.0021 7.1E-08 73.8 7.5 98 1029-1143 151-262 (340)
7 3ory_A Flap endonuclease 1; hy 96.4 0.0022 7.4E-08 74.5 5.2 101 1030-1143 166-276 (363)
8 1bgx_T TAQ DNA polymerase; DNA 95.8 0.0062 2.1E-07 77.6 5.5 98 1029-1142 116-215 (832)
9 1exn_A 5'-exonuclease, 5'-nucl 95.7 0.015 5E-07 65.7 7.4 109 1029-1151 126-236 (290)
10 3q8k_A Flap endonuclease 1; he 94.3 0.022 7.5E-07 65.6 3.7 102 1030-1148 157-262 (341)
11 2lua_A Protein MALE-specific l 73.5 1.9 6.4E-05 36.6 2.6 37 1264-1304 6-50 (52)
12 3ope_A Probable histone-lysine 73.2 2 6.8E-05 46.4 3.5 45 1257-1303 17-68 (222)
13 3hna_A Histone-lysine N-methyl 71.6 1.4 4.7E-05 49.6 1.9 44 1258-1303 76-142 (287)
14 1rju_V Metallothionein; Cu(I)- 69.2 1.7 6E-05 33.0 1.3 18 1263-1280 18-35 (36)
15 3h6l_A Histone-lysine N-methyl 53.7 6.6 0.00022 44.0 3.1 41 1261-1304 62-113 (278)
16 1mvh_A Cryptic LOCI regulator 53.2 8.8 0.0003 43.3 4.0 44 1259-1303 63-132 (299)
17 3ooi_A Histone-lysine N-methyl 52.0 6.3 0.00022 42.8 2.5 45 1257-1301 37-85 (232)
18 3bo5_A Histone-lysine N-methyl 51.6 8.3 0.00028 43.3 3.5 41 1261-1303 58-121 (290)
19 1aqs_A Cu-MT, Cu-metallothione 51.3 6.5 0.00022 32.2 1.8 19 1263-1281 22-40 (53)
20 1ml9_A Histone H3 methyltransf 39.0 15 0.00052 41.3 3.0 41 1260-1302 45-127 (302)
No 1
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=97.13 E-value=0.00078 Score=76.87 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=72.3
Q ss_pred ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEcc-CCCceeeeehhHHHHhhcccccccc
Q psy7142 1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLN-YGKKQRFFAAHEIAVNLGTEKSVAL 1108 (1309)
Q Consensus 1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g-~g~~~r~i~i~~i~~~lG~~~~~al 1108 (1309)
|||-.|-.- +..|. .+.|.|+|.|++.+.. ..+++... .|+....|+..++.+.+|-. -.-+
T Consensus 152 EAD~~ia~L----a~~g~-~~~I~S~D~Dll~~~~-----------~~v~~~~~~~~~~~~~~~~~~v~~~~gl~-~~q~ 214 (326)
T 1a76_A 152 EGEAQASYM----AKKGD-VWAVVSQDYDALLYGA-----------PRVVRNLTTTKEMPELIELNEVLEDLRIS-LDDL 214 (326)
T ss_dssp CHHHHHHHH----HHTTS-SSEEECSSSGGGGGTC-----------SEEEESSSSCSSCCEEEEHHHHHHHHTCC-HHHH
T ss_pred cHHHHHHHH----HHCCC-EEEEecCCcccceecC-----------CEEEEeecCCCCceEEEEHHHHHHHcCCC-HHHH
Confidence 899865332 22355 5667899999988852 22333332 24567889999999999853 3457
Q ss_pred cccccccCCcccc-cccccchhhHhhhhhccchHHHHH
Q psy7142 1109 RGFHAFSGCDTVS-TFAFHGKQTAWKTWNSCDYVTSAF 1145 (1309)
Q Consensus 1109 ~~~HAftGcDtts-~f~g~gK~~~~K~l~~~~~~q~~f 1145 (1309)
+-+=+++|||..+ .+.|+|.++|+|++++ ..+...+
T Consensus 215 id~~~L~GsD~~p~GvpGiG~ktA~kli~~-gsle~i~ 251 (326)
T 1a76_A 215 IDIAIFMGTDYNPGGVKGIGFKRAYELVRS-GVAKDVL 251 (326)
T ss_dssp HHHHHHHCCTTSTTTTTTCCHHHHHHHHHH-TCHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCcCHHHHHHHHHc-CCHHHHH
Confidence 7888999999999 9999999999999998 6655544
No 2
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=96.98 E-value=0.00072 Score=77.84 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=68.0
Q ss_pred ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEc---cCC----C------ceeeeehhHH
Q psy7142 1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSL---NYG----K------KQRFFAAHEI 1096 (1309)
Q Consensus 1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~---g~g----~------~~r~i~i~~i 1096 (1309)
|||-.|-.= +..|. .+.|.|+|.|++.+..- .+++.. |.+ + ....|+...+
T Consensus 149 EADa~ia~L----a~~g~-~~~I~S~D~D~l~~~~~-----------~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v 212 (346)
T 2izo_A 149 EGEAEAAYL----NKLGL-SWAAASQDYDAILFGAK-----------RLVRNLTITGKRKLPNKDVYVEIKPELIETEIL 212 (346)
T ss_dssp CHHHHHHHH----HHTTS-SSEEECSSSHHHHTTCS-----------EEEESSCC-----------CCCCCCEEEEHHHH
T ss_pred cHHHHHHHH----HhCCC-eEEEECCCCCcceecCC-----------eEEEEecccccccCcccccccccceEEEEHHHH
Confidence 899875322 23565 56778999999877621 122211 211 1 3567999999
Q ss_pred HHhhcccccccccccccccCCcccc-cccccchhhHhhhhhccchHHHHHHH
Q psy7142 1097 AVNLGTEKSVALRGFHAFSGCDTVS-TFAFHGKQTAWKTWNSCDYVTSAFVA 1147 (1309)
Q Consensus 1097 ~~~lG~~~~~al~~~HAftGcDtts-~f~g~gK~~~~K~l~~~~~~q~~f~~ 1147 (1309)
.+.+|-. -..++-+-+++|||..+ .+.|+|-++|+|+++++..+...+..
T Consensus 213 ~~~~gl~-~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~ 263 (346)
T 2izo_A 213 LKKLGIT-REQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEY 263 (346)
T ss_dssp HHHHTCC-HHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC------
T ss_pred HHHcCCC-HHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHH
Confidence 9999852 34577788999999999 99999999999999988765444443
No 3
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=96.88 E-value=0.0029 Score=73.17 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=65.8
Q ss_pred cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHH--HHhhcccccc
Q psy7142 1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEI--AVNLGTEKSV 1106 (1309)
Q Consensus 1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i--~~~lG~~~~~ 1106 (1309)
-|||-.|-.= +.+|. .+.|.|+|+|++.+.. ..+.+.....++...|+...+ .+.+|.....
T Consensus 149 ~EADaqiA~L----a~~g~-~~~I~S~D~Dll~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 212 (352)
T 3qe9_Y 149 YEADAQLAYL----NKAGI-VQAIITEDSALLAFGC-----------KKVILKMDQFGNGLEIDQARLGMCRQLGDVFTE 212 (352)
T ss_dssp SCHHHHHHHH----HHTTS-CSEEECSCGGGGGGTC-----------SEEEESCCTTSEEEEEEGGGGTTCCTTCSSCCH
T ss_pred cchHHHHHHH----HHCCC-eEEEEeCCcCcccccC-----------CeEEEeccCCCCcEEEeHHHHHHHHHhCCCCCH
Confidence 4899876332 23555 4577899999887752 123333322222223555554 4566633222
Q ss_pred -cccccccccCCcccccccccchhhHhhhhhcc--chHHHHHH
Q psy7142 1107 -ALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSC--DYVTSAFV 1146 (1309)
Q Consensus 1107 -al~~~HAftGcDtts~f~g~gK~~~~K~l~~~--~~~q~~f~ 1146 (1309)
-++-+=+++|||..+.+.|+|.++|+|+++++ .++-..+.
T Consensus 213 ~q~id~~~L~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~ 255 (352)
T 3qe9_Y 213 EKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIK 255 (352)
T ss_dssp HHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHT
T ss_pred HHHHHHHHhcCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHH
Confidence 36777889999999999999999999999998 45544443
No 4
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=96.82 E-value=0.0008 Score=77.09 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=67.0
Q ss_pred hcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEE-----ccCC---C-ceeeeehhHHHHhhcccccccccccccc
Q psy7142 1044 LQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVS-----LNYG---K-KQRFFAAHEIAVNLGTEKSVALRGFHAF 1114 (1309)
Q Consensus 1044 ~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~-----~g~g---~-~~r~i~i~~i~~~lG~~~~~al~~~HAf 1114 (1309)
.+|. .+.|.|+|.|++.+..- .+- -++.+. ++.| . ....|+...+.+.+|-. -.-++-+-++
T Consensus 161 ~~g~-~~~I~S~D~Dllql~~~---~v~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~-~~q~id~~~L 231 (336)
T 1rxw_A 161 AKGD-VEYTGSQDYDSLLFGSP---RLA----RNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLT-REQLIDIAIL 231 (336)
T ss_dssp HTTS-SSEEECSSSHHHHTTCS---EEE----ESCCC-------------CCCCEEEEHHHHHHHHTCC-HHHHHHHHHH
T ss_pred HcCC-eeEEEcCCCCcceecCC---eEE----EeccccccccCCccccccccceEEeEHHHHHHHcCCC-HHHHHHHHhh
Confidence 5665 56678999999877631 110 011111 1111 1 45679999999999853 3457888899
Q ss_pred cCCcccccccccchhhHhhhhhccchHHHHHHHh
Q psy7142 1115 SGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAI 1148 (1309)
Q Consensus 1115 tGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l 1148 (1309)
+|||..+.+.|+|.++|.|+++++..+...+..+
T Consensus 232 ~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~ 265 (336)
T 1rxw_A 232 VGTDYNEGVKGVGVKKALNYIKTYGDIFRALKAL 265 (336)
T ss_dssp HCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhC
Confidence 9999999999999999999999987776655554
No 5
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=96.81 E-value=0.0013 Score=76.54 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=74.8
Q ss_pred ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEc---cCC-CceeeeehhHHHHhhccccc
Q psy7142 1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSL---NYG-KKQRFFAAHEIAVNLGTEKS 1105 (1309)
Q Consensus 1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~---g~g-~~~r~i~i~~i~~~lG~~~~ 1105 (1309)
|||-.|-.=+.. |. .+.|.|+|+|++.+.. ..+++.. +.+ .....|+...+.+.+|-. -
T Consensus 157 EADd~iA~La~~----g~-~~~iiS~D~Dll~~g~-----------~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~-~ 219 (379)
T 1ul1_X 157 EAEASCAALVKA----GK-VYAAATEDMDCLTFGS-----------PVLMRHLTASEAKKLPIQEFHLSRILQELGLN-Q 219 (379)
T ss_dssp CHHHHHHHHHHH----TS-SSEEECSCTHHHHTTC-----------SEEEECSSCCC-CCCCEEEEEHHHHHHHHTCC-H
T ss_pred cHHHHHHHHHhc----CC-eEEEEecCcCcccccc-----------ceEEEEecccccCcCCeEEEeHHHHHHHhCCC-H
Confidence 899876544333 43 4678899999888762 1233322 122 236789999999999853 2
Q ss_pred ccccccccccCCcccccccccchhhHhhhhhccchHHHHHHHhc
Q psy7142 1106 VALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAIS 1149 (1309)
Q Consensus 1106 ~al~~~HAftGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l~ 1149 (1309)
.-++-+-+++|||++..+.|+|-++|+++++.+..+...+..+.
T Consensus 220 ~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~ 263 (379)
T 1ul1_X 220 EQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLD 263 (379)
T ss_dssp HHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCC
T ss_pred HHHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHH
Confidence 34777889999999999999999999999999988766555543
No 6
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=96.71 E-value=0.0021 Score=73.81 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=70.2
Q ss_pred cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccC-CC------------ceeeeehhH
Q psy7142 1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNY-GK------------KQRFFAAHE 1095 (1309)
Q Consensus 1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~-g~------------~~r~i~i~~ 1095 (1309)
-|||-.|-.=+ ..|. .+.|.|+|.|++++.. ..+++.... |+ ....|+...
T Consensus 151 ~EADa~iA~La----~~g~-~~~i~S~D~D~l~~g~-----------~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~ 214 (340)
T 1b43_A 151 SEGEAQAAYMA----AKGS-VYASASQDYDSLLFGA-----------PRLVRNLTITGKRKLPGKNVYVEIKPELIILEE 214 (340)
T ss_dssp SCHHHHHHHHH----HHTS-SSEEECSSSHHHHTTC-----------SEEEESTTTCEEEECTTSSCEEEECCEEEEHHH
T ss_pred hhHHHHHHHHH----HcCC-EEEEEccCCCcceecC-----------cEEEEEeccCCCccCcccccccccceeEEEHHH
Confidence 48998664322 2454 5677899999987752 123332221 11 345789999
Q ss_pred HHHhhcccccccccccccccCCcccc-cccccchhhHhhhhhccchHHH
Q psy7142 1096 IAVNLGTEKSVALRGFHAFSGCDTVS-TFAFHGKQTAWKTWNSCDYVTS 1143 (1309)
Q Consensus 1096 i~~~lG~~~~~al~~~HAftGcDtts-~f~g~gK~~~~K~l~~~~~~q~ 1143 (1309)
+.+.+|-. -.-++-+=+++|||.++ .+.|.|-++|+|+++++..+..
T Consensus 215 v~~~~gl~-~~q~id~~~L~G~Dy~p~gv~GiG~ktA~kli~~~gsle~ 262 (340)
T 1b43_A 215 VLKELKLT-REKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLA 262 (340)
T ss_dssp HHHHHTCC-HHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGG
T ss_pred HHHHhCCC-HHHHHHHHHhcCCCCCCCCCCCccHHHHHHHHHHcCCHHH
Confidence 99999853 34477788899999999 9999999999999999876543
No 7
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=96.41 E-value=0.0022 Score=74.48 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=67.8
Q ss_pred ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEE-----ccCCC----ceeeeehhHHHHhh
Q psy7142 1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVS-----LNYGK----KQRFFAAHEIAVNL 1100 (1309)
Q Consensus 1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~-----~g~g~----~~r~i~i~~i~~~l 1100 (1309)
|||-.| +.-+++|. .+.|.|+|+|++.+..- .+- .++.+. ++.+. ....|+...+.+.+
T Consensus 166 EADaqi----A~La~~g~-~~~I~S~D~D~l~fg~~---~v~----~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~ 233 (363)
T 3ory_A 166 EGEAQA----AYIVKKGD-AYASASQDYDSLLFGSP---KLV----RNLTISGRRKLPRKNEYVEVKPELIELDKLLVQL 233 (363)
T ss_dssp CHHHHH----HHHHHTTS-CSEEECSSSHHHHTTCS---EEE----ESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHH
T ss_pred cHHHHH----HHHHHCCC-eEEEECCCcCccccCCC---eEE----EEeeccccccCCccccccccceEEEcHHHHHHHh
Confidence 677754 22234555 56778999999887532 110 011100 11111 24789999999999
Q ss_pred cccccccccccccccCCcccc-cccccchhhHhhhhhccchHHH
Q psy7142 1101 GTEKSVALRGFHAFSGCDTVS-TFAFHGKQTAWKTWNSCDYVTS 1143 (1309)
Q Consensus 1101 G~~~~~al~~~HAftGcDtts-~f~g~gK~~~~K~l~~~~~~q~ 1143 (1309)
|-. -.-++-+=+++|||..+ .+.|+|.++|+|+++++..+-.
T Consensus 234 gl~-~~q~id~~~L~GsDy~p~GVpGIG~KtA~kLl~~~gsle~ 276 (363)
T 3ory_A 234 GIT-LENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEK 276 (363)
T ss_dssp TCC-HHHHHHHHHHHCBTTBTTCSTTCCHHHHHHHHHHHTSSTT
T ss_pred CcC-HHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHHcCCHHH
Confidence 853 33467788899999999 9999999999999998766543
No 8
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=95.80 E-value=0.0062 Score=77.62 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=74.8
Q ss_pred cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHHHHhhcccccccc
Q psy7142 1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVAL 1108 (1309)
Q Consensus 1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i~~~lG~~~~~al 1108 (1309)
.|||-.|-.=+..+..+|. .|+|.|.|.|.+.+.- +. ..+|.. +| ..|+...+.+.+|-. -.-+
T Consensus 116 ~EADD~iatLa~~~~~~G~-~v~IvS~DkDllql~~---~~------v~~~~~--~g---~~~~~~~v~~~~gv~-p~q~ 179 (832)
T 1bgx_T 116 YEADDVLASLAKKAEKEGY-EVRILTADKDLYQLLS---DR------IHVLHP--EG---YLITPAWLWEKYGLR-PDQW 179 (832)
T ss_dssp SCHHHHHHHHHHHHHHHTC-CBCCCCSSTTCCTTCC---TT------BCBCCS--SS---CCBCSTTHHHHTCCC-GGGT
T ss_pred ccHHHHHHHHHHHHHHcCC-eEEEEeCCCChhhcCc---CC------EEEEeC--CC---cEEcHHHHHHHHCcC-HHHH
Confidence 4999988777777777886 5668899999988751 11 122322 33 568888999999843 2347
Q ss_pred cccccccC--CcccccccccchhhHhhhhhccchHH
Q psy7142 1109 RGFHAFSG--CDTVSTFAFHGKQTAWKTWNSCDYVT 1142 (1309)
Q Consensus 1109 ~~~HAftG--cDtts~f~g~gK~~~~K~l~~~~~~q 1142 (1309)
+-+-+++| ||..+...|+|.++|.|+++.+..+.
T Consensus 180 id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle 215 (832)
T 1bgx_T 180 ADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLE 215 (832)
T ss_dssp TTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSC
T ss_pred HHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHH
Confidence 78899999 99999999999999999999876653
No 9
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=95.70 E-value=0.015 Score=65.68 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=82.5
Q ss_pred cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHHHHhhcccccccc
Q psy7142 1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVAL 1108 (1309)
Q Consensus 1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i~~~lG~~~~~al 1108 (1309)
-|||-.|-.=|..+..+|. .|+|.|.|-|.+-|.- +. ..+| .++ ..+.++...+.+.+|-.--.-+
T Consensus 126 ~EADDviatLa~~~~~~G~-~v~IvS~DkDl~Qlv~---~~------v~v~-~~~---~~~~~~~~~v~ek~Gv~p~~q~ 191 (290)
T 1exn_A 126 VEADDMAAYIVKLIGHLYD-HVWLISTDGDWDTLLT---DK------VSRF-SFT---TRREYHLRDMYEHHNVDDVEQF 191 (290)
T ss_dssp BCHHHHHHHHHHHHGGGSS-CEEEECSCGGGGGGCC---SS------EEEE-ETT---TTEEECGGGHHHHHSSSSHHHH
T ss_pred cCHHHHHHHHHHHHHHCCC-cEEEEeCCCChhhcCC---CC------EEEE-ECC---CCEEEcHHHHHHHcCCCHHHHH
Confidence 3899988777777777777 6778999999776641 11 1233 222 5577899999999984321256
Q ss_pred cccccccC--CcccccccccchhhHhhhhhccchHHHHHHHhcCC
Q psy7142 1109 RGFHAFSG--CDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKP 1151 (1309)
Q Consensus 1109 ~~~HAftG--cDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l~~~ 1151 (1309)
+-+.|+.| ||..+...|+|.++|.|+++++-.+-..+..+...
T Consensus 192 iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~ 236 (290)
T 1exn_A 192 ISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLP 236 (290)
T ss_dssp HHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCS
T ss_pred HHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHh
Confidence 77889999 99999999999999999999998887777776543
No 10
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=94.28 E-value=0.022 Score=65.60 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=73.2
Q ss_pred ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEE--cc--CCCceeeeehhHHHHhhccccc
Q psy7142 1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVS--LN--YGKKQRFFAAHEIAVNLGTEKS 1105 (1309)
Q Consensus 1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~--~g--~g~~~r~i~i~~i~~~lG~~~~ 1105 (1309)
|||-.|-.= +..|. .++|.|.|+|++++.. ..++.. +. .+...+.|+...+.+.+|-. -
T Consensus 157 EADd~ia~L----a~~g~-v~~i~s~D~D~l~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~-~ 219 (341)
T 3q8k_A 157 EAEASCAAL----VKAGK-VYAAATEDMDCLTFGS-----------PVLMRHLTASEAKKLPIQEFHLSRILQELGLN-Q 219 (341)
T ss_dssp CHHHHHHHH----HHTTS-SSEEECSCTHHHHTTC-----------SEEEESCCCCSSCCCEEEEEEHHHHHHHHTCC-H
T ss_pred cHHHHHHHH----HhcCC-eEEEEcCCccccccCC-----------cEEEEcccccccCCCceEEEcHHHHHHHhCCC-H
Confidence 899876432 23454 5556799999988862 123322 21 22346889999999999853 3
Q ss_pred ccccccccccCCcccccccccchhhHhhhhhccchHHHHHHHh
Q psy7142 1106 VALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAI 1148 (1309)
Q Consensus 1106 ~al~~~HAftGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l 1148 (1309)
.-++-+=+++|||.+..+.|+|.++|+|+++.+..+...+..+
T Consensus 220 ~q~id~~~L~G~D~~~gipGiG~KtA~kll~~~gsle~i~~~~ 262 (341)
T 3q8k_A 220 EQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRL 262 (341)
T ss_dssp HHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCSHHHHHHHS
T ss_pred HHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHH
Confidence 3467788999999999999999999999999888776555554
No 11
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster}
Probab=73.53 E-value=1.9 Score=36.64 Aligned_cols=37 Identities=35% Similarity=0.894 Sum_probs=29.7
Q ss_pred ccccCC--------CCCCCCcccccccCCcccccccCCCCCCCCCCCCC
Q psy7142 1264 KCKCKT--------GCSSTSNCSCKRSNVDCVPVLCSNCNGCSNMSQLT 1304 (1309)
Q Consensus 1264 ~C~Ck~--------gC~~~~~C~C~k~gl~Ct~~~C~~c~~C~N~~~~~ 1304 (1309)
.|+|.+ -|.+ +||-|-.+|-.|+. |+| .+|.|....+
T Consensus 6 ~CrCG~~~~~~~~~TC~~-~RCpCY~~~~sC~~--C~C-~GCkNPhk~D 50 (52)
T 2lua_A 6 KCRCGISGSSNTLTTCRN-SRCPCYKSYNSCAG--CHC-VGCKNPHKED 50 (52)
T ss_dssp CCCBTTBSCCCSSSTTTS-TTCHHHHTTCCCSS--CCC-SSCCCSCCCC
T ss_pred ccccCcccCCCCceeEcC-CccceecCCCccCC--CEe-cCcCCCCccC
Confidence 488833 4777 69999999999987 776 6899998765
No 12
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=73.19 E-value=2 Score=46.37 Aligned_cols=45 Identities=24% Similarity=0.614 Sum_probs=36.9
Q ss_pred hhhccccccccCC-------CCCCCCcccccccCCcccccccCCCCCCCCCCCC
Q psy7142 1257 KGCRDLVKCKCKT-------GCSSTSNCSCKRSNVDCVPVLCSNCNGCSNMSQL 1303 (1309)
Q Consensus 1257 ~~lleLi~C~Ck~-------gC~~~~~C~C~k~gl~Ct~~~C~~c~~C~N~~~~ 1303 (1309)
....+...|.|+. ||+ ..|-+|...+.|++..|+|-..|.|...+
T Consensus 17 ~~~~~~~~C~C~~~~~~~~~~c~--~~C~nr~~~~EC~~~~C~C~~~C~Nr~~q 68 (222)
T 3ope_A 17 LSGYEATTCNCKKPDDDTRKGCV--DDCLNRMIFAECSPNTCPCGEQCCNQRIQ 68 (222)
T ss_dssp BCCCCCCCCCCCCCSCSSSCSSC--SCCTTGGGTBCCCTTTCTTTTSCSSCTTT
T ss_pred CccccCccccCcCCCcCCCCCCc--ccCcCcCeEeEeCCCCCcCCCCCCCceEe
Confidence 3456789999985 788 59999999999996479987799998654
No 13
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=71.62 E-value=1.4 Score=49.60 Aligned_cols=44 Identities=34% Similarity=0.674 Sum_probs=34.4
Q ss_pred hhccccccccCCCCCCCCccccccc-----------------------CCcccccccCCCCCCCCCCCC
Q psy7142 1258 GCRDLVKCKCKTGCSSTSNCSCKRS-----------------------NVDCVPVLCSNCNGCSNMSQL 1303 (1309)
Q Consensus 1258 ~lleLi~C~Ck~gC~~~~~C~C~k~-----------------------gl~Ct~~~C~~c~~C~N~~~~ 1303 (1309)
....+..|.|+.+|.+ .+|.|.+. -..|++ .|+|-.+|.|...+
T Consensus 76 ~~~~~~gC~C~~~C~~-~~C~C~~~~~~~~y~~~g~l~~~~~~~~~~~i~EC~~-~C~C~~~C~Nr~~q 142 (287)
T 3hna_A 76 NITHLQYCVCIDDCSS-SNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNH-ACSCWRNCRNRVVQ 142 (287)
T ss_dssp BGGGCCCCCCSSSSCS-TTCHHHHHTSSCCBCTTSCBCTTCCSSSCCCEECCCT-TSSSCTTCSSCSGG
T ss_pred cCCCCCCCcCcCCCCC-CCCcCcccCcccccCCCCcccccccccCCceEEecCC-CCCCCCCCCCcccC
Confidence 3345689999999997 59999842 246999 99987799998754
No 14
>1rju_V Metallothionein; Cu(I)-thiolate, metal binding protein; 1.44A {Synthetic} SCOP: g.46.1.1 PDB: 1aoo_A 1aqq_A 1aqr_A 1fmy_A
Probab=69.23 E-value=1.7 Score=33.05 Aligned_cols=18 Identities=44% Similarity=1.261 Sum_probs=15.1
Q ss_pred cccccCCCCCCCCccccc
Q psy7142 1263 VKCKCKTGCSSTSNCSCK 1280 (1309)
Q Consensus 1263 i~C~Ck~gC~~~~~C~C~ 1280 (1309)
-.|+|.+||.|..+|-|.
T Consensus 18 kscscptgcnsddkcpcg 35 (36)
T 1rju_V 18 KSCSCPTGCNSDDKCPCG 35 (36)
T ss_dssp TSCCSCTTCCCGGGCCTT
T ss_pred hcCCCCCCCCCCCcCCCC
Confidence 469999999998888874
No 15
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=53.70 E-value=6.6 Score=43.95 Aligned_cols=41 Identities=24% Similarity=0.667 Sum_probs=32.9
Q ss_pred cccccccCC-----------CCCCCCcccccccCCcccccccCCCCCCCCCCCCC
Q psy7142 1261 DLVKCKCKT-----------GCSSTSNCSCKRSNVDCVPVLCSNCNGCSNMSQLT 1304 (1309)
Q Consensus 1261 eLi~C~Ck~-----------gC~~~~~C~C~k~gl~Ct~~~C~~c~~C~N~~~~~ 1304 (1309)
+-..|.|+. +|+ ..|-||..-..|+. .|+|-.+|.|...+.
T Consensus 62 ~~~~C~C~~~~~~~~~~~~~~C~--~~C~nr~~~~EC~~-~C~C~~~C~Nr~~q~ 113 (278)
T 3h6l_A 62 KRMQCECTPLSKDERAQGEIACG--EDCLNRLLMIECSS-RCPNGDYCSNRRFQR 113 (278)
T ss_dssp ---CCCCCCCCHHHHHHTCCSSC--TTCTTGGGTBCCCT-TCTTGGGCSSCTTTT
T ss_pred ccceeeccCCCcccccccCCCCC--CCCCCcceEeccCC-CCCcCCCCCCccccC
Confidence 457899985 898 48999999999999 999867899987553
No 16
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=53.18 E-value=8.8 Score=43.30 Aligned_cols=44 Identities=27% Similarity=0.637 Sum_probs=33.9
Q ss_pred hccccccccCC--CCCC--CCcccccccC----------------------CcccccccCCCCCCCCCCCC
Q psy7142 1259 CRDLVKCKCKT--GCSS--TSNCSCKRSN----------------------VDCVPVLCSNCNGCSNMSQL 1303 (1309)
Q Consensus 1259 lleLi~C~Ck~--gC~~--~~~C~C~k~g----------------------l~Ct~~~C~~c~~C~N~~~~ 1303 (1309)
...++.|.|+. +|.. ...|.|.... ..|+. .|+|-..|.|...+
T Consensus 63 ~~~~~gC~C~~~~~C~~~~~~~C~C~~~~~~~~~~~y~~~g~l~~~~~~~i~EC~~-~C~C~~~C~Nr~~q 132 (299)
T 1mvh_A 63 PNFQSGCNCSSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNS-FCSCSMECPNRVVQ 132 (299)
T ss_dssp GGGCCCCCCCCSSSSCTTCTTTCSSSTTCCSSCCCSBCTTSSBCTTCCSEEECCCT-TSCSCTTCTTCTGG
T ss_pred CcCCCCCcCcCCCCcCCCCCCCCccccccccccccccCCCCceeecCCCCeEeCCC-CCCCCCCcCCcccc
Confidence 34568999996 9995 2389997543 58999 99987799998764
No 17
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=51.95 E-value=6.3 Score=42.80 Aligned_cols=45 Identities=24% Similarity=0.682 Sum_probs=35.5
Q ss_pred hhhccccccccCCC----CCCCCcccccccCCcccccccCCCCCCCCCC
Q psy7142 1257 KGCRDLVKCKCKTG----CSSTSNCSCKRSNVDCVPVLCSNCNGCSNMS 1301 (1309)
Q Consensus 1257 ~~lleLi~C~Ck~g----C~~~~~C~C~k~gl~Ct~~~C~~c~~C~N~~ 1301 (1309)
....+...|.|+.. |+....|.+|.....|++..|+|-..|.|..
T Consensus 37 ~~~~~~~~C~C~~~~~~~C~~~~~C~nr~~~~EC~~~~C~c~~~C~Nr~ 85 (232)
T 3ooi_A 37 ADLSEIPRCNCKATDENPCGIDSECINRMLLYECHPTVCPAGGRCQNQC 85 (232)
T ss_dssp CCGGGSCCCSCCTTSSSTTCTTSCCHHHHTTBCCCTTTCTTGGGCCCCH
T ss_pred CCcccCCcccccCCCCCCCCCCCCCcCcCceeEeCCCCCCCCCCcCCcc
Confidence 45667789999874 6654588899999999985688867899974
No 18
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=51.56 E-value=8.3 Score=43.32 Aligned_cols=41 Identities=29% Similarity=0.711 Sum_probs=29.8
Q ss_pred cccccccCC-CCCCCCcccccccCC----------------------cccccccCCCCCCCCCCCC
Q psy7142 1261 DLVKCKCKT-GCSSTSNCSCKRSNV----------------------DCVPVLCSNCNGCSNMSQL 1303 (1309)
Q Consensus 1261 eLi~C~Ck~-gC~~~~~C~C~k~gl----------------------~Ct~~~C~~c~~C~N~~~~ 1303 (1309)
.+..|.|.+ .|.+ ..|.|...+. .|.. .|+|...|.|...+
T Consensus 58 ~~~gC~C~~~~C~~-~~C~C~~~~~~y~~~~~l~~~~~~~~~~~~~~EC~~-~C~C~~~C~Nr~~q 121 (290)
T 3bo5_A 58 TFPGCICVKTPCLP-GTCSCLRHGENYDDNSCLRDIGSGGKYAEPVFECNV-LCRCSDHCRNRVVQ 121 (290)
T ss_dssp CCCCCCCCSSCCCT-TTCGGGTTSCSBCTTSCBCC-----CCCCCEECCCT-TCCSCTTCTTCCGG
T ss_pred cCCCCCCCCCCcCC-CCCcchhhcCccCccccccccccccccCCceEeCCC-CCCCCCCCCCeEcc
Confidence 357999987 5764 5899976643 4666 78876789998654
No 19
>1aqs_A Cu-MT, Cu-metallothionein; copper detoxification, metal-thiolate cluster; NMR {Saccharomyces cerevisiae} SCOP: g.46.1.1
Probab=51.29 E-value=6.5 Score=32.19 Aligned_cols=19 Identities=42% Similarity=1.200 Sum_probs=14.9
Q ss_pred cccccCCCCCCCCcccccc
Q psy7142 1263 VKCKCKTGCSSTSNCSCKR 1281 (1309)
Q Consensus 1263 i~C~Ck~gC~~~~~C~C~k 1281 (1309)
-.|+|.+||.|..+|-|..
T Consensus 22 kscscptgcnsddkcpcgn 40 (53)
T 1aqs_A 22 KSCSCPTGCNSDDKCPCGN 40 (53)
T ss_dssp TSCSCCTTCSSSSSCCCCC
T ss_pred hcCCCCCCCCCCCcCCCCC
Confidence 4689999999887777753
No 20
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=39.01 E-value=15 Score=41.33 Aligned_cols=41 Identities=27% Similarity=0.637 Sum_probs=31.7
Q ss_pred ccccccccCC--CCCCCCcccccccC----------------------------------------CcccccccCCCCCC
Q psy7142 1260 RDLVKCKCKT--GCSSTSNCSCKRSN----------------------------------------VDCVPVLCSNCNGC 1297 (1309)
Q Consensus 1260 leLi~C~Ck~--gC~~~~~C~C~k~g----------------------------------------l~Ct~~~C~~c~~C 1297 (1309)
..++.|.|+. +|.. ..|.|.... ..|++ .|+|-..|
T Consensus 45 ~~~~gC~C~~~~~C~~-~~C~C~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~g~l~~~~~~~~~~i~EC~~-~C~C~~~C 122 (302)
T 1ml9_A 45 SFRVGCSCASDEECMY-STCQCLDEMAPDSDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQ-GCACSKDC 122 (302)
T ss_dssp GGCCCCCCSSTTGGGS-TTSGGGTTSCCC-----------CCSSBBCSSTTBTSBCHHHHHHCCCEECCCT-TCSSCTTC
T ss_pred ccCCCccCcCCCCcCC-CCCcChhhccccccccccccccccccccccCCcccceeehhcccCCCCeEecCC-CCCCCCCC
Confidence 3468999998 8986 589996531 37999 89987799
Q ss_pred CCCCC
Q psy7142 1298 SNMSQ 1302 (1309)
Q Consensus 1298 ~N~~~ 1302 (1309)
.|...
T Consensus 123 ~Nr~~ 127 (302)
T 1ml9_A 123 PNRVV 127 (302)
T ss_dssp TTCHH
T ss_pred CCccc
Confidence 99743
Done!