RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7142
(1309 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.5 bits (185), Expect = 1e-13
Identities = 105/652 (16%), Positives = 191/652 (29%), Gaps = 231/652 (35%)
Query: 79 LNEGQGLKATLLSRNAMWHRSCRLR--FTSTRIRRLEKRKSSLPAPPSPPPAPQISTTFT 136
L+ G L+ LL A + + +L+ F LP P + F
Sbjct: 11 LSHGS-LEHVLLVPTASFFIASQLQEQFNKI-----------LPEP---------TEGFA 49
Query: 137 RSS-STTPKDL-KQYVCFLCTKTDVAEKLTNVMTLEAADTMRKWAWELKKFELAGLLQGD 194
TTP +L +++ ++ + + ++ L L +FE L+G+
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC---------LTEFE-NCYLEGN 99
Query: 195 ----LIA-LEGKYHK--LCHTQLFNEYMRSLTAKSKPTTQNVAESEHLCSVMA--FEYIA 245
L A L + + +L Y+ + +P + + S +V + +A
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK-SNSALFRAVGEGNAQLVA 158
Query: 246 QLIRDKLHSNGAQ-----YVFK-MPSLISAYKRNLEILLGREASSQEVHSTRLRQRILCT 299
G Q Y F+ + L Y + L+ + + L +
Sbjct: 159 IF--------GGQGNTDDY-FEELRDLYQTYHVLVGDLI-------KFSAETLSE----- 197
Query: 300 FPQLQAHKSGREYILVQTGTNVHQDFISEVEDVTDGD----------------AASYFKL 343
L E + Q G N+ + ++ + D D A Y
Sbjct: 198 ---LIRTTLDAEKVFTQ-GLNILE-WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 344 TRSLRREIAKVSCSFSGSFEGECQEASVPPVLIA--------------VLNLLLY-GSTN 388
+ L ++ G+ + V V IA + +L + G
Sbjct: 253 AKLLGFTPGELRSYLKGATG--HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 389 NQTDTKQPVLTIAQLLILNFRVRVRDSRNSRTRREQGAPLPMYLALSAYSNNRSSKSVDD 448
+ P ++ + + DS +G P PM L++S
Sbjct: 311 YEA---YPNTSLPPSI-------LEDSLE----NNEGVPSPM-LSIS------------- 342
Query: 449 MHQLGLSISYKRLHKTISGLCQ-LQSERAKEEGLVC-PSNLKKDLFTI-GAYDNIDHNPT 505
L+ +++ ++ L + + E LV N + G P
Sbjct: 343 ----NLTQ--EQVQDYVNKTNSHLPAGKQVEISLVNGAKN-----LVVSG-------PPQ 384
Query: 506 STTSKESFHGTSISIFQCRAENNL-GTKREFHSTFNDVDLGSTRIPELLYSFSTVKPK-- 562
S L G L +RIP FS K K
Sbjct: 385 S----------------------LYGLNLTLRKAKAPSGLDQSRIP-----FSERKLKFS 417
Query: 563 --FL------HNKNPPLPKCTEELANDLTKGLTMDSVYTKELHWLKHADEI---V-NTET 610
FL H + L ++ + DL K + + +A +I V +T
Sbjct: 418 NRFLPVASPFH--SHLLVPASDLINKDLVK---------NNVSF--NAKDIQIPVYDTFD 464
Query: 611 NGSECLDVIPDNNNQSL-D------VSW-AAFHASRHH-------AKSGISS 647
GS+ L V+ + ++ + D V W H SG+
Sbjct: 465 -GSD-LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Score = 63.9 bits (155), Expect = 4e-10
Identities = 65/362 (17%), Positives = 100/362 (27%), Gaps = 119/362 (32%)
Query: 848 STYPPSLSSNGHLRHALGKADILQPLEKLMNLE--RNTFSDRCDVVVCDGAALIHATPPR 905
ST P +LS +G L H +L P + F+ P
Sbjct: 5 STRPLTLS-HGSLEHV-----LLVPTASFFIASQLQEQFN---------------KILPE 43
Query: 906 NSRTF----EGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQ 961
+ F E E +G + + ++ F L L E
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYV----SSLVEPSKVGQFDQVLNLCLTEFE------- 92
Query: 962 VTPNSPVPRNWSEFLKNN--HNKEELFSLLGKYLIENVKNVRVVTNIGTKY--ASSESNT 1017
+ +L+ N H +L K L EN + + Y A +
Sbjct: 93 -----------NCYLEGNDIH------ALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 1018 SFLEGLDCSAFEEA--DGRIILHIRDAVL--QGAKKVLVRTVDTDVAVLAISFYF-ELKN 1072
F + + SA A +G L A+ QG YF EL++
Sbjct: 136 PFDKKSN-SALFRAVGEGNAQLV---AIFGGQGN----------------TDDYFEELRD 175
Query: 1073 -YGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFS-GCDTVSTFAFHGKQT 1130
Y + V A L L F+ G + +
Sbjct: 176 LYQTYHVLV-------GDLI--KFSAETLSELIRTTLDAEKVFTQGLNILE--------- 217
Query: 1131 AW----KTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTLDKTRQH 1186
W DY+ S IS PL +G + Q Y+ + G T + R +
Sbjct: 218 -WLENPSNTPDKDYLLSI--PISCPL--IG------VIQLAHYVVTAKLLGFTPGELRSY 266
Query: 1187 LS 1188
L
Sbjct: 267 LK 268
Score = 60.8 bits (147), Expect = 3e-09
Identities = 63/331 (19%), Positives = 98/331 (29%), Gaps = 104/331 (31%)
Query: 919 QRTIMGM---IESCSADRIDVVW---DLYFPDSLKNSLREVRGKSQRLQVTPNSPVPRNW 972
Q MGM S +A VW D +F D+ S+ ++ V N P N
Sbjct: 1627 QEQGMGMDLYKTSKAAQD---VWNRADNHFKDTYGFSILDI--------VINN---PVN- 1671
Query: 973 SEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEAD 1032
H E GK + EN + + + E + F+E +
Sbjct: 1672 ----LTIHFGGEK----GKRIRENYSAM--------IFETIVDGKLKTEKI----FKEIN 1711
Query: 1033 GRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISF-YFE-LKNYGLEELFVSLNYGKKQRF 1090
H + K +L T T A+ + FE LK+ GL
Sbjct: 1712 ----EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI---------PADAT 1758
Query: 1091 FAAHEIAVNLGTEKSVALRGFHAFSGC----DTVSTFAFHGK--QTAWK--TWNSCDYVT 1142
FA H +LG E + AL + + V + G Q A +Y
Sbjct: 1759 FAGH----SLG-EYA-AL---ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 1143 SAFVAISKPLPELGDELLQDL---------------------EQFVVYMYSKSSTGMTLD 1181
A + + E LQ + +Q+V + LD
Sbjct: 1810 IA-INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA-----AGDLRALD 1863
Query: 1182 KTRQHLSQYEEKPFD--RLP--PTSEALRQH 1208
L+ + + D L + E + H
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 57.4 bits (138), Expect = 4e-08
Identities = 102/629 (16%), Positives = 174/629 (27%), Gaps = 253/629 (40%)
Query: 545 GSTR----IPELLYSFSTV-KPKFLHNKNPPLPKCTEELANDLTKGLTMDSVYTK-EL-- 596
GS +P + ++ + +F LP+ TE A D D T EL
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKI----LPEPTEGFAAD-------DEPTTPAELVG 62
Query: 597 HWLKHADEIVNTETNGS--ECL---------------DV------IPDNNNQSLDVSWA- 632
+L + +V G + L D+ + N+ +L +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 633 --AFHASRHHAKSGISSESTVDSIL-KVTHVKKARMFHEF-------------------- 669
+ +R AK +S +S L + A++ F
Sbjct: 123 IKNYITARIMAKRPFDKKS--NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 670 ----------TALTLYSLLNEAYNSNS--PQ-VTLEEWVKE------------------- 697
+A TL L+ ++ Q + + EW++
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 698 ----Q----CVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAA-------GNPFQETS 742
Q V +K + ++ + TA F +
Sbjct: 241 IGVIQLAHYVVTAKLL-GFTPGE---LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 743 DELI-----------------SLDSRVVSDEECVK--------MLRDSEARGILLYKTFV 777
+ I SL ++ D ++ ML L + V
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILED--SLENNEGVPSPMLS---ISN--LTQEQV 349
Query: 778 SERLSEGSKTNIFAPLKSNKIRIFNQMKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKL 837
+ + +KTN P ++ I SL N + L V
Sbjct: 350 QDYV---NKTNSHLP-AGKQVEI----------------SLVNG----AKNLVV------ 379
Query: 838 DMENFFKHENSTYPPSLSS-NGHLRHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGA 896
S P SL N LR A + + Q R FS+R
Sbjct: 380 ----------SGPPQSLYGLNLTLRKAKAPSGLDQ--------SRIPFSER--------- 412
Query: 897 ALIHATPPRNSRTFEGYCSQE------FQRTIM-GMIESCSAD--RIDVVW---DLYFP- 943
+ S F F ++ + + D + +V + D+ P
Sbjct: 413 ------KLKFSNRF-------LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 944 -DSLKNS-LREVRGK-SQRL--QVTPNSPVPRNWSEFLKNNHNKEELF-----SLLGKYL 993
D+ S LR + G S+R+ + PV W + F S LG L
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCII-RLPV--KWETTTQFKATHILDFGPGGASGLGV-L 515
Query: 994 IENVKN---VRVVTNIGTKYASSESNTSF 1019
K+ VRV+ GT + + + F
Sbjct: 516 THRNKDGTGVRVIV-AGTLDINPDDDYGF 543
Score = 56.2 bits (135), Expect = 7e-08
Identities = 81/557 (14%), Positives = 141/557 (25%), Gaps = 231/557 (41%)
Query: 704 THRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLR 763
T Q L++ F E ++ + D + E V
Sbjct: 24 TASFFIASQ--------------LQEQFNKI---LPEPTEGFAA-DDEPTTPAELV---- 61
Query: 764 DSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFNQMKKKRNTDKEMVHSLQ-NDV 822
+ + +VS + L + F L+ ND+
Sbjct: 62 ---GK----FLGYVSSLVEPSKVGQFDQVLNL-CLTEFEN------------CYLEGNDI 101
Query: 823 HLFQRCL-----TVSMNRKLDMENFFK---HENSTYPPSLSSNGHLRHALGKADILQPLE 874
H L T + K ++N+ + +S AL +A
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS------ALFRA------- 148
Query: 875 KLMNLERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRI 934
V +G A + A F G Q G +
Sbjct: 149 -----------------VGEGNAQLVA-------IFGG---Q-------GNTDD------ 168
Query: 935 DVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLI 994
YF + LR+ L T + V +L + L
Sbjct: 169 ------YFEE-----LRD-------LYQTYHVLV--------------GDLIKFSAETLS 196
Query: 995 ENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRT 1054
E ++ + ++ F +GL+ + L+ T
Sbjct: 197 ELIRT------------TLDAEKVFTQGLNILEW---------------LENPS----NT 225
Query: 1055 VDTD-VAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAV--NLGTEKSVALRGF 1111
D D + + IS G+ +L AH + LG
Sbjct: 226 PDKDYLLSIPISCPL----IGVIQL--------------AHYVVTAKLLGFTPGELRSYL 267
Query: 1112 HAFSGC--DTVSTFAFHGKQTAWKTW--NSCDYVTSAF---VAISK--PLPELGDELLQD 1162
+G V+ A + W+++ + +T F V + P L +L+D
Sbjct: 268 KGATGHSQGLVTAVAIAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 1163 LEQ---------FVVYMYSKSSTGMTLDKTRQHLSQYEEKPFDR-----L---------- 1198
+ + ++ ++KT HL P + L
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL------PAGKQVEISLVNGAKNLVVS 380
Query: 1199 -PPTS-EALRQHALRAA 1213
PP S L LR A
Sbjct: 381 GPPQSLYGLNLT-LRKA 396
Score = 53.9 bits (129), Expect = 4e-07
Identities = 116/743 (15%), Positives = 198/743 (26%), Gaps = 305/743 (41%)
Query: 288 HSTRLRQRILCTFPQLQAHKSGREYILVQTGTNVH-----QDFISEVEDVTDGDAASYFK 342
+STR P +H S +LV T + + F + + T+G AA
Sbjct: 4 YSTR---------PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD--- 51
Query: 343 LTRSLRREIAKVSCSFSGSFEGECQEASVPPVLIAVLNLLLYGSTNNQTDTKQPVLTIAQ 402
E + P L+ L Y S+ + +
Sbjct: 52 ------------------------DEPTTPAELVG--KFLGYVSSLVEPSKVGQFDQVLN 85
Query: 403 LLILNFRVRVRDSRNSRTRREQGAPLPMYLALSAYSNNRSSKSVDDMHQLGLSISYKRLH 462
L + F E YL N D+H L
Sbjct: 86 LCLTEF--------------ENC-----YL-----EGN-------DIHAL---------- 104
Query: 463 KTISGLCQLQSERAKEEGLVCPSNLKKDLFTIGAYDNIDHNPTSTTSKESFHGTSISIFQ 522
+L E + L K I Y
Sbjct: 105 -----AAKLLQEN--------DTTLVKTKELIKNY-----------------------IT 128
Query: 523 CRAENNLGTKREFHST-FNDVDLGSTRI--------------PEL--LYSFSTVKPKFLH 565
R ++ +S F V G+ ++ EL LY T +
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ--TYHV-LVG 185
Query: 566 NKNPPLPKCTEELANDLTKGLTMDSVYTKELH---WLKHADEIVNTETNGSECLDVIPDN 622
+ E L+ + L + V+T+ L+ WL++ + + L IP
Sbjct: 186 ---DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-----LLSIP-- 235
Query: 623 NNQSLDVSW--------AAFHASRH------------------HAKS-----GISSESTV 651
+S A + + H++ I+ +
Sbjct: 236 ------ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 652 DSILKVTHVKKA--RMF------HE---FTALTLYSLLNEAYNSN----SP--------Q 688
+S V+KA +F +E T+L S+L ++ +N SP Q
Sbjct: 290 ESFFV--SVRKAITVLFFIGVRCYEAYPNTSLPP-SILEDSLENNEGVPSPMLSISNLTQ 346
Query: 689 VTLEEWVKEQCVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISL 748
++++V + + + +S VN +G P L L
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVE-----------ISLVNG-AKNLVVSGPP-----QSLYGL 389
Query: 749 DSRVVSDEECVKMLRDSEAR-GILLYKTFVSERLSEGSKT--NIFAPLKSNKIRIFNQMK 805
+ LR ++A G+ + SER + S + +P F
Sbjct: 390 NLT----------LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP--------F---- 427
Query: 806 KKRNTDKEMVHS--LQNDVHLFQRCLTVSMNRKLDMENF-FKHENSTYPPSLSSNGH-LR 861
HS L L + L N F ++ P + +G LR
Sbjct: 428 ----------HSHLLVPASDLIN--------KDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 862 HALGKADILQPL-----EKLMNLERNTFSDRCDVVVCD-GAA-----LIHATPPRNSRTF 910
I + + + E T ++ G A L H R
Sbjct: 470 VL--SGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH-------RNK 520
Query: 911 EGYCSQEFQRTIM-GMIESCSAD 932
+G R I+ G ++ D
Sbjct: 521 DGTG----VRVIVAGTLDINPDD 539
Score = 37.7 bits (87), Expect = 0.033
Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 62/171 (36%)
Query: 301 PQLQAHKSGREYILVQTGTNVHQDFIS-EVEDVTDGDAASYFKLTRSLRREIAKVSCSFS 359
L H G + G + +++ + E + DG + + +EI + S S++
Sbjct: 1670 VNLTIHFGG------EKGKRIRENYSAMIFETIVDGKLKT-----EKIFKEINEHSTSYT 1718
Query: 360 GSFEGECQEASVPPVLIAVLNLLLYGSTNNQTDTKQPVLTIAQLLILNFRVRVRDSRNSR 419
F E +L+ T QP LT+ + F
Sbjct: 1719 --FRSE----------KGLLSA-----TQFT----QPALTLMEKAA--FED--------- 1746
Query: 420 TRREQGA-PLPM---------YLALSAYSNNRSSKSVDDMHQLGLSISYKR 460
+ +G P Y AL++ ++ S++ + + + R
Sbjct: 1747 -LKSKGLIPADATFAGHSLGEYAALASLAD---VMSIES----LVEVVFYR 1789
Score = 35.0 bits (80), Expect = 0.19
Identities = 19/158 (12%), Positives = 41/158 (25%), Gaps = 46/158 (29%)
Query: 1105 SVALRGFHAFSGCDTVSTFAFHGK-QTAW----KTWNSCDYVTSAFVAISKPLPELGDEL 1159
+ + R T+S HG + ++ + F I LPE +
Sbjct: 3 AYSTRPL-------TLS----HGSLEHVLLVPTASFFIASQLQEQFNKI---LPEPTEGF 48
Query: 1160 LQDLEQ------------FVVYMYSKSSTGMTLDKTRQHLSQYEEK------------PF 1195
D E +V + S G L+++E
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 1196 DRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSP 1233
+ T+ + ++ + + P + +
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKR---PFDKKSNS 143
Score = 31.9 bits (72), Expect = 2.0
Identities = 51/272 (18%), Positives = 78/272 (28%), Gaps = 85/272 (31%)
Query: 877 MNLE-RNTFS------DRCDVVVCD--GAAL------------IHATPPRNSRTFEGYCS 915
M ++ T +R D D G ++ IH + R E Y +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 916 QEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREV--RGKSQRLQVTPNS-PVPRNW 972
F+ + G ++I F + + R + L T + P
Sbjct: 1691 MIFETIVDG---KLKTEKI-------FKE-INEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 973 S----EFLKNNHNKEE--LF---SLLGKY--L--------IENVKNVRVVTNIGTKYASS 1013
E LK+ F S LG+Y L IE++ V VV G
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHS-LGEYAALASLADVMSIESL--VEVVFYRG-MTMQV 1795
Query: 1014 ESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTV--DTDVAVLAISFYFELK 1071
L + GR+ LQ +V V T V E+
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQ----YVVERVGKRTGWLV-------EIV 1844
Query: 1072 NY--------------GLEELFVSLNYGKKQR 1089
NY L+ + LN+ K Q+
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQK 1876
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 3e-12
Identities = 101/708 (14%), Positives = 193/708 (27%), Gaps = 220/708 (31%)
Query: 597 HWLKHADEIVNTETNGSE--CLDVIPDNNN---QSLDVSWAAFHASRHHAKSGISSESTV 651
H H D ET + D++ + + D + KS +S E +
Sbjct: 2 HHHHHMD----FETGEHQYQYKDILSVFEDAFVDNFDCKDV-----QDMPKSILSKEE-I 51
Query: 652 DSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEE-------WVKEQCVKSKT 704
D I+ L L+ L + Q +EE ++ +
Sbjct: 52 DHIIMSKDAVSG-------TLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 705 HRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLR- 763
+ Y ++ ++ VS + LR
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYN---------------------VSRLQPYLKLRQ 142
Query: 764 ----DSEARGILLY------KT-FVSERLSEGSKTNIFAPLKSNKIRIFNQMK-KKRNTD 811
A+ +L+ KT + + +IF + K N+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLS------YKVQCKMDFKIF-WLNLKNCNSP 195
Query: 812 KEMVHSLQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSN---GHLRHALGKAD 868
+ ++ LQ + ++D N+ + + L + LR L
Sbjct: 196 ETVLEMLQK------------LLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 869 ILQPLEKLMNLER----NTFSDRC-------DVVVCDGAALIHATPPR---NSRTFEGYC 914
L L+N++ N F+ C V D + T +S T
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 915 SQEFQRTIMGMI------ESCS----------------ADRIDVVWDLYFPDSLKNSLR- 951
+ + E + D W D L +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIES 361
Query: 952 --------EVRGKSQRLQVTP-NSPVPRN-----WSEFLKNNHNKEELFSLLGKY-LIEN 996
E R RL V P ++ +P W + +K++ + + L KY L+E
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD--VMVVVNKLHKYSLVE- 418
Query: 997 VKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVL----- 1051
K + +T + + + + LH + ++
Sbjct: 419 -KQ-------------PKESTISIPSIYLELKVKLENEYALH---------RSIVDHYNI 455
Query: 1052 VRTVDT-DVAVLAISFYF---------ELKNYGLEELF--VSLNYGKKQRFFAAHEIAVN 1099
+T D+ D+ + YF +++ LF V L++ RF +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF----RFLEQKIRHDS 511
Query: 1100 LGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDEL 1159
S ++ +T+ F+ Y+ + P E L
Sbjct: 512 TAWNASGSI--------LNTLQQLKFYKP-----------YICD-----NDPKYE---RL 544
Query: 1160 LQDLEQFVVYMYSKSSTGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQ 1207
+ + F+ + D R L +E F+ EA +Q
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE------EAHKQ 586
Score = 64.5 bits (156), Expect = 2e-10
Identities = 88/659 (13%), Positives = 203/659 (30%), Gaps = 190/659 (28%)
Query: 485 SNLKKDLFTIGAYDNIDHNPTSTTSKESFHGTSISIFQCRAENNLGTKREFHSTFNDVDL 544
++ K + + D+I + + + ++ +F ++F ++
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSG-------TLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 545 G--------STRIPELLY-SFSTVKPKFLHNKNPPLPK---CTEELANDLTKGLTMDSVY 592
R P ++ + + + L+N N K + L + L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 593 TK-ELH--------WLKHADEIVNTETNGSECLDVIPDNNNQSLDVSWAAFHASRHHAKS 643
+ W+ A ++ + V + + + W
Sbjct: 151 KNVLIDGVLGSGKTWV--ALDVCLSY-------KVQCKMDFK---IFWLNL--------- 189
Query: 644 GISSESTVDSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEEWVKEQCVKSK 703
+ ++ +++L++ L ++ + S S + + ++++
Sbjct: 190 --KNCNSPETVLEML-------------QKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAE 233
Query: 704 THRHLHHEQYPAFQNEF--MSNVNKLK--DTF---------TAAGNPFQETSDELISLDS 750
R L + Y N + NV K + F T F++ +D L + +
Sbjct: 234 LRRLLKSKPYE---NCLLVLLNVQNAKAWNAFNLSCKILLTTR----FKQVTDFLSAATT 286
Query: 751 RVVSDEECVKMLRDSEARGILLYKTFVSERLS----EGSKTN-----IFAPLKSNKIRIF 801
+S + L E + +LL ++ R E TN I A + + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 802 NQMKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKL--DMENFFKHENSTYPPS-LSSNG 858
+ K N DK L + L + RK+ + F ++ P LS
Sbjct: 345 DNW-KHVNCDK-----LTTIIESSLNVLEPAEYRKMFDRLSVF--PPSAHIPTILLSL-- 394
Query: 859 HLRHALGKADILQPLEKLMN---LERNTFSDRC---DVVV-----CDGAALIHATPPRNS 907
+ + K+D++ + KL +E+ + + + +H + +
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 908 RTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSP 967
+ + S + +D + + LKN
Sbjct: 454 NIPKTFDS-----------DDLIPPYLDQYFYSHIGHHLKN------------------- 483
Query: 968 VPRNWSEFLKNNHNKEELFSLLGKYL----IENVKNVRVVTNIGTKYASSESNTSFLEGL 1023
+ + LF ++ +L +E K + + T + +S S + L+ L
Sbjct: 484 ---------IEHPERMTLFRMV--FLDFRFLEQ-K----IRHDSTAWNASGSILNTLQQL 527
Query: 1024 ---------DCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAI----SFYFE 1069
+ +E R++ I D L ++ L+ + TD+ +A+ FE
Sbjct: 528 KFYKPYICDNDPKYE----RLVNAILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 59.5 bits (143), Expect = 7e-09
Identities = 64/416 (15%), Positives = 123/416 (29%), Gaps = 123/416 (29%)
Query: 862 HALGKADILQPLEK----------LMNLERNTFSDR-CDVVVCDGAALIHATPPRNSRT- 909
H DIL E + ++ ++ S D ++ + S T
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--------MSKDAVSGTL 65
Query: 910 --FEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSP 967
F S++ + + +E RI+ + L ++ P
Sbjct: 66 RLFWTLLSKQ-EEMVQKFVEE--VLRINYKF-LM----------------SPIKTEQRQP 105
Query: 968 VP--RNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDC 1025
R + E +N ++F+ KY NV ++ + L L
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFA---KY---NVSRLQPYLKLRQA----------LLELR- 148
Query: 1026 SAFEEADGRIILHIRDAVLQGA-KKVLVRTVDTDVAVLAIS----FYFELKNYG------ 1074
+++ + G+ K + V V F+ LKN
Sbjct: 149 -----PAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 1075 --LEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGF---HAFSGC----DTVSTFAF 1125
L++L ++ R + I + + + ++ LR + C V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQN--- 255
Query: 1126 HGKQTAWKTWNSCDY-----VTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTL 1180
K WN+ + +T+ F ++ + L + + S +T
Sbjct: 256 ------AKAWNAFNLSCKILLTTRFKQVT--------DFLSAATTTHISL-DHHSMTLTP 300
Query: 1181 DKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGW 1236
D+ + L +Y + LP E L + R + I D LA D W
Sbjct: 301 DEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSI----IAESIRDGLATW---DNW 347
Score = 51.4 bits (122), Expect = 2e-06
Identities = 87/651 (13%), Positives = 175/651 (26%), Gaps = 220/651 (33%)
Query: 241 FEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEILLGREASSQEVHSTRLRQRILCTF 300
+ + + + L ++ +S R LL
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---------------------- 72
Query: 301 PQLQAHKSGREYILVQTGTNVHQDFISEVEDVTDGDAASYFKLTRSLRREIAKVSCSFSG 360
+ Q F VE+V + Y L ++
Sbjct: 73 ---------------SKQEEMVQKF---VEEVLRIN---YKFLMSPIKT----------- 100
Query: 361 SFEGECQEASVPPVL-IAVLNLLLYGSTNNQTDTK------QPVLTIAQLLILNFRVRVR 413
E ++ S+ + I + L +NQ K QP L + Q L
Sbjct: 101 ----EQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQAL--------- 144
Query: 414 DSRNSRTRREQGAPLP-M------YLALSAYSNNRSSKSVDDMHQLGLS-ISYKRLHKTI 465
R + + + ++AL + + V + ++ K +
Sbjct: 145 ----LELRPAKNVLIDGVLGSGKTWVALDVCLSYK----VQCKMDFKIFWLNLKNCNSPE 196
Query: 466 SGLCQLQS-----ERAKEEGLVCPSNLK----------KDLFTIGAYDN----IDH--NP 504
+ L LQ + SN+K + L Y+N + + N
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 505 TSTTSKESFHGTSISIFQCR---------AENNLGTKREFHSTFNDVDLGSTRIPELLYS 555
+ +F+ C+ + L H + + + T E+
Sbjct: 257 KAW---NAFN------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL 306
Query: 556 FSTVKPKFLHNKNPPLPKCTEELA-NDLTKGLTMDSVYTKELHW--LKH--ADEIVNTET 610
K+L + LP+ E L N + +S+ W KH D++
Sbjct: 307 LL----KYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 611 NGSECLD------------VIPDNNN---QSLDVSWAAFHASRHHAKSGISSESTVDSIL 655
+ L+ V P + + L + W +S V ++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD------------VIKSDVMVVV 408
Query: 656 KVTHVKK--ARMFHEFTALTLYSLLNE--AYNSNSPQV---TLEEWVKEQCVKSKT---- 704
H + E T +++ S+ E N + ++ + + S
Sbjct: 409 NKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 705 ------HRHL-HH-------EQYPAFQN-----EFMSNVNKLKDTFTAAGNPFQETSDEL 745
+ H+ HH E+ F+ F+ K++ TA + L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QKIRHDSTAWNAS-GSILNTL 524
Query: 746 ISLDSR----VVSDEECVKMLRDSEARGILLYKTFV---SERLSEGSKTNI 789
L +D + +++ F+ E L T++
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNA--------ILDFLPKIEENLICSKYTDL 567
Score = 46.4 bits (109), Expect = 7e-05
Identities = 84/620 (13%), Positives = 177/620 (28%), Gaps = 127/620 (20%)
Query: 62 MALKYYDDLPPNL-----DLDLLNEGQGLKATLLSRN-----AMWHRSCRLRFTSTRIRR 111
+Y D L + D + K+ L +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 112 LEKR------KSSLPAPPSPPPAPQISTTFTRSSSTTPKDLKQYVCFLCTKTDVAEKLTN 165
++ + L I T R S + + L V K N
Sbjct: 74 KQEEMVQKFVEEVL-RINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKY-N 130
Query: 166 VMTLEAADTMRKWAWELKKFELAGLLQGDLIALE-----GKYHKLCHTQLFNEYMRS--- 217
V L+ +R+ EL+ + ++ GK T + + S
Sbjct: 131 VSRLQPYLKLRQALLELRP--------AKNVLIDGVLGSGK------TWVALDVCLSYKV 176
Query: 218 ----------LTAKSKPTTQNVAES-EHLCSVMAFEYIAQL---IRDKLHSNGAQYVFKM 263
L K+ + + V E + L + + ++ KL + Q +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 264 PSLISAYKRNLEILLGREASSQEVHST-RLRQRILCTFPQLQAHKSGREYILVQTGTNVH 322
Y+ L +L + + + L +IL T K +++ T T++
Sbjct: 237 LLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLT----TRFKQVTDFLSAATTTHIS 290
Query: 323 QDFISEVEDVTDGDAASYFKL-----TRSLRREIAKVSCSFSGSFEGECQEASVPPVLIA 377
D S +T + S + L RE+ + P ++
Sbjct: 291 LDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTN-----------------PRRLS 331
Query: 378 VLNLLLYGSTNNQTDTKQPVLTIAQLLILNFRVRVRDSRNSRTRREQ------GAPLPMY 431
++ + + K V I+ + V + R ++ A +P
Sbjct: 332 IIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 432 LALSAYSNNRSSKSVDD-MHQL-GLSISYKRLHKTISGLCQLQSE-RAKEEGLVCPSNLK 488
L LS + V +++L S+ K+ ++ + + E + K E L
Sbjct: 391 L-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY---ALH 446
Query: 489 KDLFTIGAYDNIDHNPTSTTSKESFHGTSISIFQCRAENNLGTKREFHSTFNDVDLGSTR 548
+ + + Y+ + + +++G H + T
Sbjct: 447 RSI--VDHYNIPKTFDSDDLIPPYLDQY---FY-----SHIG----HHLKNIEHPERMTL 492
Query: 549 IPELLYSFSTVKPKFLHNKNPPLPKCTEELANDLT-----KGLTMDS--VYTKELHWLKH 601
+ F ++ K H+ + + N L K D+ Y + ++ +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTA--WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 602 ADEIVNTETN--GSECLDVI 619
+ E N S+ D++
Sbjct: 551 F--LPKIEENLICSKYTDLL 568
Score = 34.8 bits (79), Expect = 0.23
Identities = 36/279 (12%), Positives = 73/279 (26%), Gaps = 90/279 (32%)
Query: 16 SVHPRQL--------DWNKCCLCQLDTNEELTSPTNNKDKKRVDESYKSLSETLMALKYY 67
+ +PR+L D L T + +K ++ S L K +
Sbjct: 324 TTNPRRLSIIAESIRDG-------LATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMF 375
Query: 68 DDL---PPNLDL------------------DLLNEGQGLKATLLSRNA------MWHRSC 100
D L PP+ + ++N+ K +L+ + +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVEKQPKESTISIPSIYL 433
Query: 101 RLRFTSTRIRRLEKR--------KSSLPAPPSPPPAPQISTTFTRSSSTTPKDLKQYVCF 152
L+ L + K+ PP L QY
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY------------------LDQYFYS 475
Query: 153 LCTKTDVAEKLTNVMTLEAADTMRKW----AWELKKFELAGL-------LQGDLIALEGK 201
+ L N+ E R + +K + L L+
Sbjct: 476 H-----IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-F 529
Query: 202 YHK-LC-HTQLFNEYMRSLTAKSKPTTQNVAESEHLCSV 238
Y +C + + + ++ +N+ S++ +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific;
SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A
{Homo sapiens}
Length = 232
Score = 42.0 bits (99), Expect = 6e-04
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 1255 IWKGCRDLVKCKCK----TGCSSTSNCSCKRSNVDCVPVLCSNCNGCSN 1299
++ +C CK C S C + +C P +C C N
Sbjct: 35 FTADLSEIPRCNCKATDENPCGIDSECINRMLLYECHPTVCPAGGRCQN 83
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 41.4 bits (97), Expect = 0.001
Identities = 9/46 (19%), Positives = 10/46 (21%)
Query: 1254 TIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCNGCSN 1299
I C C CSC R + C G
Sbjct: 51 DIDPTQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGG 96
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.013
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 109 IRRLEKRKSSLP--APPSPPPAPQISTT 134
+++L+ +SL A S P A I T
Sbjct: 22 LKKLQ---ASLKLYADDSAP-ALAIKAT 45
Score = 35.3 bits (80), Expect = 0.041
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 17/45 (37%)
Query: 46 DKKRVDESYKSLSETLMALKYY-DDLPPNLDLDLLNEGQGLKATL 89
+K+ + K L + +LK Y DD P L +KAT+
Sbjct: 18 EKQAL----KKL-QA--SLKLYADDSAPAL---------AIKATM 46
>4mt2_A Metallothionein isoform II; 2.00A {Rattus rattus} SCOP: g.46.1.1 PDB:
2mrt_A 1mrt_A 1mhu_A 1dfs_A 2mhu_A 1dft_A 2mrb_A
Length = 62
Score = 32.7 bits (74), Expect = 0.061
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 1265 CKCKTG--CSSTSNC--------SCKRSNVDCVPVLCSNC-NGC 1297
C C T CS +C SCK+S C PV C+ C GC
Sbjct: 6 CSCATDGSCSCAGSCKCKQCKCTSCKKSCCSCCPVGCAKCSQGC 49
>1qjl_A Metallothionein; metal-binding, detoxification, radical scavenger;
NMR {Strongylocentrotus purpuratus} SCOP: g.46.1.1
Length = 28
Score = 31.3 bits (70), Expect = 0.091
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 1265 CKCKTGCSSTSNCSCKRSNVDC 1286
CKC GC S CSC N C
Sbjct: 7 CKCANGCKCGSGCSCTEGNCAC 28
Score = 27.1 bits (59), Expect = 2.8
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 1258 GCRDLVKCKCKTGCSSTS-NCSC 1279
C+ CKC +GCS T NC+C
Sbjct: 6 ACKCANGCKCGSGCSCTEGNCAC 28
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET:
SAM; 2.90A {Homo sapiens}
Length = 222
Score = 34.6 bits (80), Expect = 0.15
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 1261 DLVKCKCKTGCSS-----TSNCSCKRSNVDCVPVLCSNCNGCSN 1299
+ C CK +C + +C P C C N
Sbjct: 21 EATTCNCKKPDDDTRKGCVDDCLNRMIFAECSPNTCPCGEQCCN 64
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two
SUB-domain architecture, beta-sheet, structural protein;
NMR {Homo sapiens} SCOP: g.27.1.2
Length = 73
Score = 30.3 bits (68), Expect = 0.54
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 1276 NCSCKRSNVDCVPVLCSNCNGCSN 1299
C C V C ++C + C +
Sbjct: 30 ICVCDTGTVLCDDIICEDVKDCLS 53
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 31.9 bits (73), Expect = 0.65
Identities = 6/43 (13%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 1257 KGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCNGCSN 1299
C + +K C C + CS+
Sbjct: 39 TICIETIKGTCWQTVID-GRCEININGATLKSQCCSSLGAAWG 80
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 33.1 bits (75), Expect = 0.70
Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 21/195 (10%)
Query: 110 RRLEKRKSSLPAPPSPPPAPQISTTFTRSSSTTPKDLKQYVCFL-------CTKTDVAEK 162
R L+KR+ AP P AP IS T + + C
Sbjct: 21 RPLDKRQE--AAPTLRPVAPPISGTGYQPRPPKQDKQAMKKGPIIYPDAGGCKHPLDELG 78
Query: 163 LTNVMTLEAADTMRKWAWELKKFELAGLLQGDLIALEGKYHKLCH-TQLFNEYMRSLTAK 221
+ E T+ K +K L L+ + K + +Y+ + K
Sbjct: 79 VLCPTGCELQTTLLKQEKTVKP---------VLRDLKDRVAKFSDTSTTMYQYVNMIDNK 129
Query: 222 SKPTTQNVAESEHLCSVMA--FEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEILLG 279
T + +++ + S E I+D L +N + + ++I + + ++ L
Sbjct: 130 LVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLEN 189
Query: 280 REASSQEVHSTRLRQ 294
A+ + +
Sbjct: 190 AIATQTDYCRSPCVA 204
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics consortium,
alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A
{Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A*
3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A*
2o8j_A*
Length = 287
Score = 32.6 bits (74), Expect = 0.86
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 1265 CKCKTGCSSTSNCSCKRSNVDCVPVLCSNCNGCSN 1299
C C CSS SNC C + ++ C N
Sbjct: 83 CVCIDDCSS-SNCMCGQLSMRCWYDKDGRLLPEFN 116
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling
protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1
g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 31.2 bits (70), Expect = 1.2
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 1250 TCLPTIWKGCRDLVKCKCKTGCSSTSN--CSCK----RSNVDCVPVLCSNCNGCSN 1299
CL CR + + C+ + C C+ R C NC+ C N
Sbjct: 59 HCLS--CSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLN 112
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Length = 95
Score = 29.6 bits (67), Expect = 1.5
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 981 NKEELFSLLGKYLIENVKNVRVVTNIGT---------KYASSESNTSFLEGLD-CSAFEE 1030
+ + + L Y V N+R++ + T + +S+ + L+ L +
Sbjct: 22 VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81
Query: 1031 ADGRII 1036
DG+ I
Sbjct: 82 IDGKTI 87
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich
domain, TNF receptor, structural genomics, PSI protein
structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Length = 134
Score = 30.4 bits (68), Expect = 1.9
Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 13/66 (19%)
Query: 1242 DSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSN--CSCK-------RSNVDCVPVLCS 1292
+ CL + C + + CS T N C C + C C
Sbjct: 48 IAHLNGLSKCLQ--CQMCDPAMGLRASRNCSRTENAVCGCSPGHFCIVQDGDHCAA--CR 103
Query: 1293 NCNGCS 1298
S
Sbjct: 104 AYATSS 109
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, enterococcus faecalis V583, PSI, protein
structure initiative; HET: MSE; 2.26A {Enterococcus
faecalis} SCOP: c.77.1.4
Length = 336
Score = 31.3 bits (72), Expect = 2.2
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 878 NLE-RNTFSDRCDVVVCDG 895
N+E R + DVVV DG
Sbjct: 211 NVEARELLNGVADVVVTDG 229
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, unknown function; HET: MSE; 2.95A {Bacillus
subtilis} SCOP: c.77.1.4
Length = 345
Score = 31.4 bits (72), Expect = 2.2
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 878 NLE-RNTFSDRCDVVVCDG 895
N+E R+ D DVVV DG
Sbjct: 209 NVEARDLLDDVADVVVTDG 227
>1x9p_A Penton protein; jellyroll domain, anti-parallel beta sheet,
insertion domain, virus like particle; HET: C15; 3.30A
{Human adenovirus 2} PDB: 1x9t_A* 2bld_A 2c9f_A 2c9g_A
2c6s_A 1vsz_N 3iyn_M 3izo_A
Length = 523
Score = 30.5 bits (68), Expect = 3.8
Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 27/200 (13%)
Query: 511 ESFH-------GTSISIFQCRAENNLGT-KRE-----FHSTFNDVDLGSTRIPELLYSFS 557
E+FH G + R N LG KR+ F T++D++ G+ IP LL
Sbjct: 186 EAFHPDIILLPGCGVDFTHSRLSNLLGIRKRQPFQEGFRITYDDLEGGN--IPALLDV-- 241
Query: 558 TVKPKFLHNKNPPLPKCTEELANDLTKGLTMDSVYTKELHWLKHADEIVNTETNGSECLD 617
+ + + + G + ++ +++ + G D
Sbjct: 242 ---DAYQASLKDDTEQGGDGAGGGNNSGSGAEENSNAAAAAMQPVEDMNDHAIRG----D 294
Query: 618 VIPDNNNQSLDVSWAAFHASRHHAKSGISSESTVDSILKVTHVKKARMFH---EFTALTL 674
+ + AA A+ A+ + I +T K R ++ + T
Sbjct: 295 TFATRAEEKRAEAEAAAEAAAPAAQPEVEKPQKKPVIKPLTEDSKKRSYNLISNDSTFTQ 354
Query: 675 YSLLNEAYNSNSPQVTLEEW 694
Y AYN PQ + W
Sbjct: 355 YRSWYLAYNYGDPQTGIRSW 374
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain;
2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB:
1mvx_A
Length = 299
Score = 30.2 bits (68), Expect = 4.3
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 7/49 (14%)
Query: 1253 PTIWKGCRDLVKCKCKTGC--SSTSNCSCKRSNVDCVPVLCSNCNGCSN 1299
P GC C GC ++ S C C + + G
Sbjct: 63 PNFQSGC----NCSSLGGCDLNNPSRCECLDDLDEPTH-FAYDAQGRVR 106
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural genomics;
HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 30.3 bits (68), Expect = 5.3
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 1198 LPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPS-PDGWGWI 1239
+ E R A+ + ++ + + + DGW W+
Sbjct: 196 VRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSITFEDGWVWM 238
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 30.1 bits (68), Expect = 6.0
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 690 TLEEWVKEQCVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNP-FQE-TSDELIS 747
T E V K + + + + + F+ +N ++ ++TA ++ T ++I
Sbjct: 120 TASENVYVNTAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIR 179
Query: 748 L 748
Sbjct: 180 R 180
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 29.6 bits (67), Expect = 6.3
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 711 EQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISL 748
+ +E ++ VNK T+ A N + L L
Sbjct: 5 PSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRL 42
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 29.0 bits (66), Expect = 7.1
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 866 KADILQP--LEKLMNLERNTFSDRCDVVVCDGAA 897
+ DI + + + R ++ D VV D A
Sbjct: 68 RCDIFKETIFDDIDRALREEGIEKVDDVVSDAMA 101
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A
{Daucus carota} PDB: 3vlb_A
Length = 413
Score = 29.5 bits (65), Expect = 8.9
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 1263 VKCKCKTGCSSTSNCSCKRSN-VDCVPVLCSNC-----NGCSNMSQ 1302
V C S+ C+ S + C +C GC+N +
Sbjct: 48 VDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTC 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.389
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 19,372,218
Number of extensions: 1151374
Number of successful extensions: 2962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2907
Number of HSP's successfully gapped: 58
Length of query: 1309
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1204
Effective length of database: 3,770,088
Effective search space: 4539185952
Effective search space used: 4539185952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.4 bits)