RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7142
         (1309 letters)



>d4mt2a_ g.46.1.1 (A:) Metallothionein {Rat (Rattus rattus) [TaxId:
            10117]}
          Length = 61

 Score = 33.4 bits (76), Expect = 0.014
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 11/44 (25%)

Query: 1265 CKCKTG--CSSTSNC--------SCKRSNVDCVPVLCSNC-NGC 1297
            C C T   CS   +C        SCK+S   C PV C+ C  GC
Sbjct: 5    CSCATDGSCSCAGSCKCKQCKCTSCKKSCCSCCPVGCAKCSQGC 48


>d1qjla_ g.46.1.1 (A:) Metallothionein {Purple sea urchin
            (Strongylocentrotus purpuratus) [TaxId: 7668]}
          Length = 28

 Score = 31.3 bits (70), Expect = 0.033
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 1265 CKCKTGCSSTSNCSCKRSNVDC 1286
            CKC  GC   S CSC   N  C
Sbjct: 7    CKCANGCKCGSGCSCTEGNCAC 28



 Score = 27.1 bits (59), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 1258 GCRDLVKCKCKTGCSSTS-NCSC 1279
             C+    CKC +GCS T  NC+C
Sbjct: 6    ACKCANGCKCGSGCSCTEGNCAC 28


>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human
            (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 28.4 bits (63), Expect = 0.93
 Identities = 6/25 (24%), Positives = 10/25 (40%)

Query: 1275 SNCSCKRSNVDCVPVLCSNCNGCSN 1299
              C C    V C  ++C +   C +
Sbjct: 29   RICVCDTGTVLCDDIICEDVKDCLS 53


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 30.5 bits (68), Expect = 1.6
 Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 3/108 (2%)

Query: 29  LCQLDTNEELTSPTNNKDKKRVDESYKSLSETLMALKYYDDLPPNLDLDLLNEGQGLKAT 88
           LC   TNE L    N+       E YK        + +  DL   +DL     G     +
Sbjct: 427 LCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGI---LS 483

Query: 89  LLSRNAMWHRSCRLRFTSTRIRRLEKRKSSLPAPPSPPPAPQISTTFT 136
           +L    M+ ++    F     +    +      P  P    Q    F 
Sbjct: 484 ILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFE 531


>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase,
            C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 173

 Score = 29.3 bits (65), Expect = 1.8
 Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 7/102 (6%)

Query: 1203 EALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSEWVANW---TCLPTIWKGC 1259
            + + +  +R   Q          P            +   +                   
Sbjct: 44   KIIAEEKMRLKEQNAAFPPLERKPFIPKKPIPAIKDVIGKALQYLGTFGELSNIEQVVAV 103

Query: 1260 RDLVKC----KCKTGCSSTSNCSCKRSNVDCVPVLCSNCNGC 1297
             D   C    KC   C+ +   + +      +P +   C GC
Sbjct: 104  IDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGC 145


>d1t2ya_ g.46.1.1 (A:) Metallothionein {Neurospora crassa [TaxId:
            5141]}
          Length = 26

 Score = 25.9 bits (56), Expect = 3.0
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 1258 GCRDLVKCKCKTGCSSTSNCSCK 1280
            GC     C C +GC S SNC  K
Sbjct: 4    GCSGASSCNCGSGC-SCSNCGSK 25


>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 471

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 155 TKTDVAEKLTNVMTLEAADTMRKWAWELKK 184
            + +VA  +  +M  E    +R    ELK+
Sbjct: 410 RREEVARVVKGLMEGEEGKGVRNKMKELKE 439


>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing
           protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 107

 Score = 27.6 bits (60), Expect = 3.9
 Identities = 5/25 (20%), Positives = 8/25 (32%)

Query: 117 SSLPAPPSPPPAPQISTTFTRSSST 141
           ++ P  P  P  P +       S  
Sbjct: 5   TTCPDKPGIPVKPSVKGKIHSHSFK 29


>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
           {Medicago truncatula [TaxId: 3880]}
          Length = 473

 Score = 28.6 bits (62), Expect = 5.9
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 155 TKTDVAEKLTNVMTLEAADTMRKWAWELKK 184
            + ++A+ +  V+  +    M++ A ELKK
Sbjct: 418 KREELAKLINEVIAGDKGKKMKQKAMELKK 447


>d1ezga_ b.80.2.1 (A:) Insect cysteine-rich antifreeze protein {Yellow
            mealworm (Tenebrio molitor) [TaxId: 7067]}
          Length = 82

 Score = 26.4 bits (58), Expect = 7.1
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 7/47 (14%)

Query: 1257 KGCRDLVKCKCKTGCSSTSNC----SCKRSNVDCVPVLCSNCNGCSN 1299
              C +   C     C+ +++C    +C  S  DC     + C   +N
Sbjct: 25   VTCTNSQHCVKANTCTGSTDCNTAQTCTNSK-DCFE--ANTCTDSTN 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,730,161
Number of extensions: 223675
Number of successful extensions: 678
Number of sequences better than 10.0: 1
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 13
Length of query: 1309
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1213
Effective length of database: 1,089,516
Effective search space: 1321582908
Effective search space used: 1321582908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)