Query psy7145
Match_columns 191
No_of_seqs 219 out of 1148
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:21:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00135 COesterase: Carboxyle 99.9 1E-28 2.2E-33 224.1 3.5 118 1-135 1-123 (535)
2 KOG4389|consensus 99.9 6.7E-26 1.5E-30 205.6 8.1 99 19-129 29-129 (601)
3 COG2272 PnbA Carboxylesterase 99.9 3.9E-25 8.4E-30 201.3 6.9 87 21-129 2-88 (491)
4 cd00312 Esterase_lipase Estera 99.9 3.5E-24 7.6E-29 195.2 8.2 89 23-131 1-89 (493)
5 KOG1516|consensus 99.9 3E-22 6.5E-27 184.9 6.7 96 18-134 12-110 (545)
6 PF10278 Med19: Mediator of RN 88.3 0.31 6.7E-06 39.9 1.9 14 116-129 97-110 (178)
7 PF10278 Med19: Mediator of RN 86.0 0.37 8E-06 39.5 1.2 9 173-181 168-176 (178)
8 PF15240 Pro-rich: Proline-ric 67.6 5.8 0.00013 32.6 3.0 22 1-22 1-22 (179)
9 TIGR00869 sec62 protein transl 65.0 4.8 0.0001 34.3 2.1 21 115-135 188-208 (232)
10 PF03839 Sec62: Translocation 56.0 4.8 0.0001 34.1 0.7 20 115-134 182-201 (224)
11 KOG2572|consensus 55.7 5.8 0.00013 36.6 1.1 6 27-32 335-340 (498)
12 KOG3794|consensus 55.3 14 0.00031 33.9 3.6 13 49-62 106-118 (453)
13 KOG2812|consensus 48.6 17 0.00036 33.1 2.8 12 41-52 96-107 (426)
14 COG4939 Major membrane immunog 48.1 29 0.00064 27.2 3.8 40 9-48 12-53 (147)
15 KOG2138|consensus 46.8 13 0.00029 36.5 2.1 8 175-182 842-849 (883)
16 KOG2812|consensus 45.9 21 0.00047 32.4 3.1 9 43-51 111-119 (426)
17 COG3915 Uncharacterized protei 44.7 30 0.00065 27.4 3.4 12 39-50 59-70 (155)
18 PRK13859 type IV secretion sys 43.4 20 0.00044 23.6 1.9 16 1-16 1-16 (55)
19 PF09716 ETRAMP: Malarial earl 38.6 22 0.00047 25.4 1.7 16 120-135 13-28 (84)
20 PF11153 DUF2931: Protein of u 37.0 65 0.0014 26.5 4.5 16 1-16 1-16 (216)
21 PF11355 DUF3157: Protein of u 35.1 38 0.00082 28.3 2.8 34 1-34 1-34 (199)
22 PF04006 Mpp10: Mpp10 protein; 32.9 49 0.0011 31.9 3.6 9 124-132 525-533 (600)
23 KOG2573|consensus 31.9 33 0.00072 31.8 2.1 6 124-129 432-437 (498)
24 PHA03289 envelope glycoprotein 30.6 53 0.0012 29.5 3.1 33 54-86 48-83 (352)
25 PF11912 DUF3430: Protein of u 28.0 63 0.0014 26.0 3.0 12 1-12 1-12 (212)
26 KOG2236|consensus 27.8 34 0.00074 32.1 1.5 10 116-125 268-277 (483)
27 PRK15265 subtilase cytotoxin s 25.8 54 0.0012 25.6 2.1 13 1-13 1-13 (134)
28 PF00879 Defensin_propep: Defe 24.9 73 0.0016 20.9 2.2 19 1-19 1-19 (52)
29 COG2913 OlmA Outer membrane li 24.7 18 0.00039 28.7 -0.8 31 29-59 34-76 (147)
30 PHA03292 envelope glycoprotein 23.3 1.3E+02 0.0028 27.8 4.2 33 54-86 52-88 (413)
31 KOG3448|consensus 23.1 90 0.0019 22.8 2.6 52 18-77 11-63 (96)
32 PF13956 Ibs_toxin: Toxin Ibs, 21.6 50 0.0011 17.1 0.8 6 1-6 2-7 (19)
33 PF08434 CLCA_N: Calcium-activ 21.4 1.2E+02 0.0026 26.3 3.6 18 20-37 20-37 (262)
No 1
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.95 E-value=1e-28 Score=224.12 Aligned_cols=118 Identities=40% Similarity=0.734 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHHHhhh--ccCCCcEEEcCceeEEEEEec--C-CCeeEEecccccCCCCCCCCCCCCCCCCCCCCccccc
Q psy7145 1 MRYLLLCLYFVWLTSA--HKYSTRVARTKYGPLRGILIQ--N-PPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFAD 75 (191)
Q Consensus 1 M~~lll~l~l~~~~~~--~~~~~p~V~t~~G~v~G~~~~--~-~~V~~FlGIPYA~pP~G~lRF~~P~p~~~w~g~~dAt 75 (191)
|++++|+++++++... ...+.++|+|.+|.|+|.... + .+|++|+|||||+||+|++||++|+++.+|+++++||
T Consensus 1 ~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~g~i~G~~~~~~~~~~v~~f~gIpYA~pP~g~~Rf~~p~~~~~~~~~~~a~ 80 (535)
T PF00135_consen 1 MKLLLLLLLLLALFASSQAQASSPVVTTSYGKIRGIRVNTDDGKGVYSFLGIPYAQPPVGELRFRPPQPPPPWSGVRDAT 80 (535)
T ss_dssp -----------------ECCSTCCEEEETTEEEEEEEEEESTCCEEEEEEEEESSE---GGGTTS--EB--S-SSEEETB
T ss_pred CchHHHHHHHHHHHHHhcccCCCCEEEECCeEEEeEEEecCCCcceEEEeCcccCCCCCCCcccccccccccchhhhhhh
Confidence 7777766666555443 344678999999999997654 3 4799999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCchhhhhhcCCcchhhhhhhhcCCCCCCCccchhcccccCCCCCCcc
Q psy7145 76 TYSAVCPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVALEG 135 (191)
Q Consensus 76 ~~gp~CpQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sEDCL~LNI~tP~~a~~~~ 135 (191)
.+|+.|||....... . .......+||||||||||+|..+..++
T Consensus 81 ~~~~~C~Q~~~~~~~--~---------------~~~~~~~~sEDCL~LnI~~P~~~~~~~ 123 (535)
T PF00135_consen 81 KYGPACPQPPPPGPS--P---------------GFNPPVGQSEDCLYLNIYTPSNASSNS 123 (535)
T ss_dssp S---BESCECTTSSH--H---------------HCSHSSHBES---EEEEEEETSSSSTT
T ss_pred hcccccccccccccc--c---------------ccccccCCCchHHHHhhhhcccccccc
Confidence 999999998753310 0 000112369999999999999887653
No 2
>KOG4389|consensus
Probab=99.92 E-value=6.7e-26 Score=205.63 Aligned_cols=99 Identities=33% Similarity=0.606 Sum_probs=84.8
Q ss_pred CCCcEEEcCceeEEEEEec--CCCeeEEecccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCchhhhhh
Q psy7145 19 YSTRVARTKYGPLRGILIQ--NPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAVCPQRLPDIGNRTEALL 96 (191)
Q Consensus 19 ~~~p~V~t~~G~v~G~~~~--~~~V~~FlGIPYA~pP~G~lRF~~P~p~~~w~g~~dAt~~gp~CpQ~~~~~~~~~~~~~ 96 (191)
.+..+|+|..|+|+|.... +..|.+|+|||||+||+|++||+.|+|..+|.|++|||++.+.|.|..... +.
T Consensus 29 ~~~~vv~t~~G~vRG~~~t~~g~~V~aFlGIPfAePPvg~~RFkkP~p~~pW~g~ldAtt~a~~C~Q~~D~y------fp 102 (601)
T KOG4389|consen 29 DDDLVVQTKLGTVRGTELTFPGKPVSAFLGIPFAEPPVGDLRFKKPEPKQPWSGVLDATTLANTCYQTRDTY------FP 102 (601)
T ss_pred ccceEEeccCCcccceEEecCCceEEEEecCccCCCCCccccCCCCCcCCCccceecccccchhhhcccccc------CC
Confidence 3457999999999999876 788999999999999999999999999999999999999999999986432 33
Q ss_pred cCCcchhhhhhhhcCCCCCCCccchhcccccCC
Q psy7145 97 QLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPR 129 (191)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~sEDCL~LNI~tP~ 129 (191)
++.+.++ .+.....||||||||||+|.
T Consensus 103 ~F~GsEM------WNpNt~lSEDCLYlNVW~P~ 129 (601)
T KOG4389|consen 103 GFWGSEM------WNPNTELSEDCLYLNVWAPA 129 (601)
T ss_pred CCCcccc------cCCCCCcChhceEEEEeccC
Confidence 4445444 44557889999999999995
No 3
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.91 E-value=3.9e-25 Score=201.29 Aligned_cols=87 Identities=41% Similarity=0.839 Sum_probs=76.8
Q ss_pred CcEEEcCceeEEEEEecCCCeeEEecccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCchhhhhhcCCc
Q psy7145 21 TRVARTKYGPLRGILIQNPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAVCPQRLPDIGNRTEALLQLPR 100 (191)
Q Consensus 21 ~p~V~t~~G~v~G~~~~~~~V~~FlGIPYA~pP~G~lRF~~P~p~~~w~g~~dAt~~gp~CpQ~~~~~~~~~~~~~~~~~ 100 (191)
.++++|.+|.+.|+..+ +|+.|+|||||.||+|++||++|+++++|+++.||+.+||.|||.......
T Consensus 2 ~~~~~t~~G~~~g~~~~--~v~~w~GIpYA~pPvG~~Rfr~p~~~~~w~~~rda~~~gp~~~Q~~~~~~~---------- 69 (491)
T COG2272 2 APVAETTTGKVEGITVN--GVHSWLGIPYAAPPVGELRFRRPVPPEPWSGVRDATQFGPACPQPFNRMGS---------- 69 (491)
T ss_pred Cceeecccceeeccccc--ceeEEeecccCCCCCCcccccCCCCCcCCCcccchhccCCCCCCccccccc----------
Confidence 57899999999999965 999999999999999999999999999999999999999999999541110
Q ss_pred chhhhhhhhcCCCCCCCccchhcccccCC
Q psy7145 101 GRLVFLEKLLPLLSNQSEDCLYLNLYVPR 129 (191)
Q Consensus 101 ~~~~~~~~~~~~~~~~sEDCL~LNI~tP~ 129 (191)
.....+||||||||||+|+
T Consensus 70 ----------~~~~~~sEDCL~LNIwaP~ 88 (491)
T COG2272 70 ----------GEDFTGSEDCLYLNIWAPE 88 (491)
T ss_pred ----------cccCCccccceeEEeeccC
Confidence 1125789999999999999
No 4
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.90 E-value=3.5e-24 Score=195.16 Aligned_cols=89 Identities=36% Similarity=0.606 Sum_probs=75.2
Q ss_pred EEEcCceeEEEEEecCCCeeEEecccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCchhhhhhcCCcch
Q psy7145 23 VARTKYGPLRGILIQNPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAVCPQRLPDIGNRTEALLQLPRGR 102 (191)
Q Consensus 23 ~V~t~~G~v~G~~~~~~~V~~FlGIPYA~pP~G~lRF~~P~p~~~w~g~~dAt~~gp~CpQ~~~~~~~~~~~~~~~~~~~ 102 (191)
+|+|.+|.|+|.... +|+.|+|||||+||+|++||++|+|+++|+++++|+.+|+.|||........
T Consensus 1 ~v~t~~G~v~G~~~~--~~~~F~GIPYA~pP~g~~Rf~~p~~~~~w~~~~~a~~~g~~c~Q~~~~~~~~----------- 67 (493)
T cd00312 1 LVVTPNGKVRGVDEG--GVYSFLGIPYAEPPVGDLRFKEPQPYEPWSDVLDATSYPPSCMQWDQLGGGL----------- 67 (493)
T ss_pred CEEeCCceEEeEEeC--CEEEEeccccCCCCCccccCCCCCCCCCCcCceeccccCCCCccCCcccccc-----------
Confidence 588999999998764 9999999999999999999999999999999999999999999975322100
Q ss_pred hhhhhhhcCCCCCCCccchhcccccCCCC
Q psy7145 103 LVFLEKLLPLLSNQSEDCLYLNLYVPRPV 131 (191)
Q Consensus 103 ~~~~~~~~~~~~~~sEDCL~LNI~tP~~a 131 (191)
......+|||||+||||+|...
T Consensus 68 -------~~~~~~~sEdcl~l~i~~p~~~ 89 (493)
T cd00312 68 -------WNAKLPGSEDCLYLNVYTPKNT 89 (493)
T ss_pred -------ccCCCCCCCcCCeEEEEeCCCC
Confidence 0012357999999999999864
No 5
>KOG1516|consensus
Probab=99.86 E-value=3e-22 Score=184.88 Aligned_cols=96 Identities=39% Similarity=0.727 Sum_probs=82.7
Q ss_pred cCCCcEEEcCceeEEEEEec---CCCeeEEecccccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCchhhh
Q psy7145 18 KYSTRVARTKYGPLRGILIQ---NPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAVCPQRLPDIGNRTEA 94 (191)
Q Consensus 18 ~~~~p~V~t~~G~v~G~~~~---~~~V~~FlGIPYA~pP~G~lRF~~P~p~~~w~g~~dAt~~gp~CpQ~~~~~~~~~~~ 94 (191)
..+.++|.|.+|.++|.... +..++.|+|||||+||+|++||++|+|+.+|++++||+.+++.|+|........
T Consensus 12 ~~~~~~~~t~~G~i~G~~~~~~~~~~~~~F~gIpya~PP~G~lRF~~P~p~~~W~gv~~at~~~~~C~q~~~~~~~~--- 88 (545)
T KOG1516|consen 12 TPSPPVVGTPYGKIRGKTVSSTYDVDVDRFLGIPYAKPPVGELRFRKPQPPEPWTGVLDATKYGPACPQNDELTGQN--- 88 (545)
T ss_pred ccCCceEecccceEeeeEeeccCCceeEEEcccccCCCCCccccCCCCCCCCCCccccccccCCCCCCCcccccccc---
Confidence 55678999999999999865 467999999999999999999999999999999999999999999986433210
Q ss_pred hhcCCcchhhhhhhhcCCCCCCCccchhcccccCCCCCCc
Q psy7145 95 LLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVALE 134 (191)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~sEDCL~LNI~tP~~a~~~ 134 (191)
...++|||||||||+|.....+
T Consensus 89 ------------------~~~~sEDCLylNV~tp~~~~~~ 110 (545)
T KOG1516|consen 89 ------------------RVFGSEDCLYLNVYTPQGCSES 110 (545)
T ss_pred ------------------CCCCcCCCceEEEeccCCCccC
Confidence 2468999999999999876543
No 6
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=88.25 E-value=0.31 Score=39.91 Aligned_cols=14 Identities=21% Similarity=0.263 Sum_probs=6.8
Q ss_pred CCccchhcccccCC
Q psy7145 116 QSEDCLYLNLYVPR 129 (191)
Q Consensus 116 ~sEDCL~LNI~tP~ 129 (191)
..|-|-+|.+..|.
T Consensus 97 lPE~yr~~~~~~P~ 110 (178)
T PF10278_consen 97 LPEQYRLLHQQPPK 110 (178)
T ss_pred CchHHhhhhccCcc
Confidence 34445555555443
No 7
>PF10278 Med19: Mediator of RNA pol II transcription subunit 19 ; InterPro: IPR019403 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=86.03 E-value=0.37 Score=39.45 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=3.5
Q ss_pred CCCCCCCCC
Q psy7145 173 KFLPPSDPS 181 (191)
Q Consensus 173 ~~~~~~~~~ 181 (191)
++.|-.+|.
T Consensus 168 K~~~~~~~~ 176 (178)
T PF10278_consen 168 KHSPEHPGM 176 (178)
T ss_pred cCCCcCCCC
Confidence 333333443
No 8
>PF15240 Pro-rich: Proline-rich
Probab=67.56 E-value=5.8 Score=32.56 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHhhhccCCCc
Q psy7145 1 MRYLLLCLYFVWLTSAHKYSTR 22 (191)
Q Consensus 1 M~~lll~l~l~~~~~~~~~~~p 22 (191)
|.++||.++||+++++...+.-
T Consensus 1 MLlVLLSvALLALSSAQ~~dEd 22 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDED 22 (179)
T ss_pred ChhHHHHHHHHHhhhccccccc
Confidence 7888888888777777655443
No 9
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=64.98 E-value=4.8 Score=34.35 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=16.3
Q ss_pred CCCccchhcccccCCCCCCcc
Q psy7145 115 NQSEDCLYLNLYVPRPVALEG 135 (191)
Q Consensus 115 ~~sEDCL~LNI~tP~~a~~~~ 135 (191)
.-.|||=+++.|.|--.-...
T Consensus 188 NLfeD~Gf~eSF~Ply~~~~~ 208 (232)
T TIGR00869 188 NLFADVGFLDSFKPLWGWHEK 208 (232)
T ss_pred chhcccCcceeeccceecccC
Confidence 345999999999997665554
No 10
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=56.01 E-value=4.8 Score=34.12 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=15.3
Q ss_pred CCCccchhcccccCCCCCCc
Q psy7145 115 NQSEDCLYLNLYVPRPVALE 134 (191)
Q Consensus 115 ~~sEDCL~LNI~tP~~a~~~ 134 (191)
.-.|||=++..|.|--.-..
T Consensus 182 NLfeD~Gf~eSF~Ply~~~~ 201 (224)
T PF03839_consen 182 NLFEDVGFFESFKPLYSWEY 201 (224)
T ss_pred ccccccchhhheeecccccc
Confidence 34599999999999755444
No 11
>KOG2572|consensus
Probab=55.71 E-value=5.8 Score=36.63 Aligned_cols=6 Identities=50% Similarity=0.905 Sum_probs=2.5
Q ss_pred CceeEE
Q psy7145 27 KYGPLR 32 (191)
Q Consensus 27 ~~G~v~ 32 (191)
.||.|.
T Consensus 335 KYGLIy 340 (498)
T KOG2572|consen 335 KYGLIY 340 (498)
T ss_pred CCccee
Confidence 344443
No 12
>KOG3794|consensus
Probab=55.34 E-value=14 Score=33.90 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=6.4
Q ss_pred ccCCCCCCCCCCCC
Q psy7145 49 YATPPLGSLRYMPP 62 (191)
Q Consensus 49 YA~pP~G~lRF~~P 62 (191)
||.+|+ +.|++|=
T Consensus 106 ~ak~~~-~irdqPF 118 (453)
T KOG3794|consen 106 LAKAPT-EIRDQPF 118 (453)
T ss_pred HhcCCc-ccccccc
Confidence 455554 3455543
No 13
>KOG2812|consensus
Probab=48.55 E-value=17 Score=33.13 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=7.9
Q ss_pred eeEEecccccCC
Q psy7145 41 VEAYLGVPYATP 52 (191)
Q Consensus 41 V~~FlGIPYA~p 52 (191)
-..+.|||||..
T Consensus 96 ~sr~r~~~~a~~ 107 (426)
T KOG2812|consen 96 ESRSRSLPFAKR 107 (426)
T ss_pred cccccCCccccc
Confidence 345777777764
No 14
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=48.09 E-value=29 Score=27.15 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=23.1
Q ss_pred HHHHHhhhccCCCcEEEcCceeEEEEEec--CCCeeEEeccc
Q psy7145 9 YFVWLTSAHKYSTRVARTKYGPLRGILIQ--NPPVEAYLGVP 48 (191)
Q Consensus 9 ~l~~~~~~~~~~~p~V~t~~G~v~G~~~~--~~~V~~FlGIP 48 (191)
+++++.+....+..-.+...|+++|...+ +.+...|+-|-
T Consensus 12 ~~~LL~aCg~sd~s~~t~~dGtY~~~y~~fDd~gwk~f~~it 53 (147)
T COG4939 12 ALSLLTACGKSDFSKMTFNDGTYQGHYESFDDHGWKAFVTIT 53 (147)
T ss_pred HHHHHHHhcccccccccccCCceeeeeccccccCccceEEEE
Confidence 33333333333344456678999998754 55666666554
No 15
>KOG2138|consensus
Probab=46.81 E-value=13 Score=36.55 Aligned_cols=8 Identities=25% Similarity=0.356 Sum_probs=2.9
Q ss_pred CCCCCCCC
Q psy7145 175 LPPSDPSG 182 (191)
Q Consensus 175 ~~~~~~~~ 182 (191)
++-+.-|+
T Consensus 842 k~kkSss~ 849 (883)
T KOG2138|consen 842 KPKKSSSS 849 (883)
T ss_pred Cccccccc
Confidence 33333333
No 16
>KOG2812|consensus
Probab=45.86 E-value=21 Score=32.44 Aligned_cols=9 Identities=0% Similarity=-0.285 Sum_probs=3.5
Q ss_pred EEecccccC
Q psy7145 43 AYLGVPYAT 51 (191)
Q Consensus 43 ~FlGIPYA~ 51 (191)
++.|-.|-.
T Consensus 111 ~~~~kr~~r 119 (426)
T KOG2812|consen 111 SSRSKRRRR 119 (426)
T ss_pred ccccccccC
Confidence 334434333
No 17
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.69 E-value=30 Score=27.43 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=6.6
Q ss_pred CCeeEEeccccc
Q psy7145 39 PPVEAYLGVPYA 50 (191)
Q Consensus 39 ~~V~~FlGIPYA 50 (191)
.+-+.|.||.-+
T Consensus 59 ~gn~rf~Gvsls 70 (155)
T COG3915 59 QGNTRFKGVSLS 70 (155)
T ss_pred cCceeecceeHH
Confidence 445566666543
No 18
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=43.39 E-value=20 Score=23.56 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=11.1
Q ss_pred ChHHHHHHHHHHHhhh
Q psy7145 1 MRYLLLCLYFVWLTSA 16 (191)
Q Consensus 1 M~~lll~l~l~~~~~~ 16 (191)
|+|.+|++++.+++..
T Consensus 1 MKY~lL~l~l~La~Cq 16 (55)
T PRK13859 1 MKYCLLCLALALAGCQ 16 (55)
T ss_pred CchhHHHHHHHHHhcc
Confidence 8888777776665544
No 19
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=38.63 E-value=22 Score=25.42 Aligned_cols=16 Identities=25% Similarity=0.117 Sum_probs=10.5
Q ss_pred chhcccccCCCCCCcc
Q psy7145 120 CLYLNLYVPRPVALEG 135 (191)
Q Consensus 120 CL~LNI~tP~~a~~~~ 135 (191)
+|.+|+++|.......
T Consensus 13 Ll~i~~l~p~~~~~~~ 28 (84)
T PF09716_consen 13 LLAINLLTPCLCNNVV 28 (84)
T ss_pred HHHHHhCcCccccccc
Confidence 4777888887644443
No 20
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=37.00 E-value=65 Score=26.52 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=9.6
Q ss_pred ChHHHHHHHHHHHhhh
Q psy7145 1 MRYLLLCLYFVWLTSA 16 (191)
Q Consensus 1 M~~lll~l~l~~~~~~ 16 (191)
|+.++++++++++++.
T Consensus 1 mk~i~~l~l~lll~~C 16 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGC 16 (216)
T ss_pred ChHHHHHHHHHHHHhh
Confidence 7877766555554443
No 21
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.15 E-value=38 Score=28.30 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHhhhccCCCcEEEcCceeEEEE
Q psy7145 1 MRYLLLCLYFVWLTSAHKYSTRVARTKYGPLRGI 34 (191)
Q Consensus 1 M~~lll~l~l~~~~~~~~~~~p~V~t~~G~v~G~ 34 (191)
|+.++++.+++++.++.+++.-+|++.+|.-.=.
T Consensus 1 mk~~~~lalll~s~~a~Aa~~~~VTLedGrqV~L 34 (199)
T PF11355_consen 1 MKTYILLALLLLSSSAFAAEVATVTLEDGRQVQL 34 (199)
T ss_pred CchHHHHHHHHHhhhhhhccccEEEecCCCEEEe
Confidence 7777777777777666666666888988864433
No 22
>PF04006 Mpp10: Mpp10 protein; InterPro: IPR007151 This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites [].
Probab=32.90 E-value=49 Score=31.89 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=4.9
Q ss_pred ccccCCCCC
Q psy7145 124 NLYVPRPVA 132 (191)
Q Consensus 124 NI~tP~~a~ 132 (191)
-||.|....
T Consensus 525 Ei~~~~~~~ 533 (600)
T PF04006_consen 525 EIYKPGKAK 533 (600)
T ss_pred hhccccccc
Confidence 356665544
No 23
>KOG2573|consensus
Probab=31.94 E-value=33 Score=31.83 Aligned_cols=6 Identities=0% Similarity=-0.086 Sum_probs=2.5
Q ss_pred ccccCC
Q psy7145 124 NLYVPR 129 (191)
Q Consensus 124 NI~tP~ 129 (191)
.|-++.
T Consensus 432 ~~~~~~ 437 (498)
T KOG2573|consen 432 GISRDS 437 (498)
T ss_pred cccccc
Confidence 343444
No 24
>PHA03289 envelope glycoprotein I; Provisional
Probab=30.58 E-value=53 Score=29.52 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=22.2
Q ss_pred CCCCCCCCCC-CCCCCCCccccccCC--CCCCCCCC
Q psy7145 54 LGSLRYMPPV-TPSTWRAPRFADTYS--AVCPQRLP 86 (191)
Q Consensus 54 ~G~lRF~~P~-p~~~w~g~~dAt~~g--p~CpQ~~~ 86 (191)
.|.+-|...| |...++|+..-..+. ..|++...
T Consensus 48 ~G~LlFLGdQ~P~t~YsGTVELLh~n~s~~Cy~Vv~ 83 (352)
T PHA03289 48 YGKLLFLGDQYLEESYSGTTEILKWNEANKCYSVAH 83 (352)
T ss_pred EEEEEecCCcCCCcccCceEEEEEECCCCCcCceee
Confidence 4677788777 456678877666655 45888653
No 25
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=28.02 E-value=63 Score=26.01 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=6.8
Q ss_pred ChHHHHHHHHHH
Q psy7145 1 MRYLLLCLYFVW 12 (191)
Q Consensus 1 M~~lll~l~l~~ 12 (191)
|++|+++++|++
T Consensus 1 MKll~~lilli~ 12 (212)
T PF11912_consen 1 MKLLISLILLIL 12 (212)
T ss_pred CcHHHHHHHHHH
Confidence 898654444433
No 26
>KOG2236|consensus
Probab=27.83 E-value=34 Score=32.06 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=5.3
Q ss_pred CCccchhccc
Q psy7145 116 QSEDCLYLNL 125 (191)
Q Consensus 116 ~sEDCL~LNI 125 (191)
.+|.||.++|
T Consensus 268 S~~e~~~~gi 277 (483)
T KOG2236|consen 268 SEEEISFLGI 277 (483)
T ss_pred chhhhhhhcc
Confidence 3455665554
No 27
>PRK15265 subtilase cytotoxin subunit B-like protein; Provisional
Probab=25.83 E-value=54 Score=25.62 Aligned_cols=13 Identities=46% Similarity=0.687 Sum_probs=6.6
Q ss_pred ChHHHHHHHHHHH
Q psy7145 1 MRYLLLCLYFVWL 13 (191)
Q Consensus 1 M~~lll~l~l~~~ 13 (191)
|+++++..+++++
T Consensus 1 m~~~~~~~l~l~~ 13 (134)
T PRK15265 1 MRYLLSLSVFLIV 13 (134)
T ss_pred ChhHHHHHHHHHH
Confidence 6665554444443
No 28
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=24.88 E-value=73 Score=20.95 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=11.8
Q ss_pred ChHHHHHHHHHHHhhhccC
Q psy7145 1 MRYLLLCLYFVWLTSAHKY 19 (191)
Q Consensus 1 M~~lll~l~l~~~~~~~~~ 19 (191)
|+.+.|+..+++++....+
T Consensus 1 MRTL~LLaAlLLlAlqaQA 19 (52)
T PF00879_consen 1 MRTLALLAALLLLALQAQA 19 (52)
T ss_pred CcHHHHHHHHHHHHHHHhc
Confidence 7877776666665554333
No 29
>COG2913 OlmA Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]
Probab=24.71 E-value=18 Score=28.71 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=23.1
Q ss_pred eeEEEEEec------------CCCeeEEecccccCCCCCCCCC
Q psy7145 29 GPLRGILIQ------------NPPVEAYLGVPYATPPLGSLRY 59 (191)
Q Consensus 29 G~v~G~~~~------------~~~V~~FlGIPYA~pP~G~lRF 59 (191)
...+|...+ -..|..-||.|-...+++..||
T Consensus 34 ~i~qGn~~~~~~v~ql~~Gmtk~QV~~lLGtP~~~d~F~~~~W 76 (147)
T COG2913 34 DINQGNVLDQDAVDQLKVGMTKDQVLYLLGTPSLVDTFDTNTW 76 (147)
T ss_pred ccccccccCHHHHHHhcCCCCHHHHHHHhCCCeeecCCCCceE
Confidence 467777765 1346667899999999988886
No 30
>PHA03292 envelope glycoprotein I; Provisional
Probab=23.26 E-value=1.3e+02 Score=27.78 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=22.9
Q ss_pred CCCCCCCCCCC--CCCCCCccccccCCC--CCCCCCC
Q psy7145 54 LGSLRYMPPVT--PSTWRAPRFADTYSA--VCPQRLP 86 (191)
Q Consensus 54 ~G~lRF~~P~p--~~~w~g~~dAt~~gp--~CpQ~~~ 86 (191)
.|.+-|...|. ...|+|++.-..|.. .|++...
T Consensus 52 ~G~LlFLGdQ~p~~t~YsGTVELLhyn~s~~Cy~Vl~ 88 (413)
T PHA03292 52 VGHLIFLDGQRLPTTNYNGTIELIHYNYSSDCYVVIQ 88 (413)
T ss_pred eeEEEecCCCCCCCcccCceEEEEEeCCCCCccceee
Confidence 46677888886 456788877666654 4888653
No 31
>KOG3448|consensus
Probab=23.10 E-value=90 Score=22.83 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=32.6
Q ss_pred cCCCcEEEcCce-eEEEEEecCCCeeEEecccccCCCCCCCCCCCCCCCCCCCCccccccC
Q psy7145 18 KYSTRVARTKYG-PLRGILIQNPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTY 77 (191)
Q Consensus 18 ~~~~p~V~t~~G-~v~G~~~~~~~V~~FlGIPYA~pP~G~lRF~~P~p~~~w~g~~dAt~~ 77 (191)
.....+|.+.++ .|.|.. .+|++||+|---.. |-..|...+.-..+.++.-.
T Consensus 11 vg~~V~VeLKnd~~i~GtL---~svDqyLNlkL~di-----~v~d~~kyPhm~Sv~ncfIR 63 (96)
T KOG3448|consen 11 VGKEVVVELKNDLSICGTL---HSVDQYLNLKLTDI-----SVTDPDKYPHMLSVKNCFIR 63 (96)
T ss_pred cCCeEEEEEcCCcEEEEEe---cccchhheeEEeee-----EeeCcccCCCeeeeeeEEEe
Confidence 355678899888 577876 37999999886654 44444443333334444333
No 32
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=21.58 E-value=50 Score=17.13 Aligned_cols=6 Identities=17% Similarity=0.800 Sum_probs=2.8
Q ss_pred ChHHHH
Q psy7145 1 MRYLLL 6 (191)
Q Consensus 1 M~~lll 6 (191)
|+++++
T Consensus 2 Mk~vII 7 (19)
T PF13956_consen 2 MKLVII 7 (19)
T ss_pred ceehHH
Confidence 454444
No 33
>PF08434 CLCA_N: Calcium-activated chloride channel; InterPro: IPR013642 The CLCA family of calcium-activated chloride channels has been identified in many epithelial and endothelial cell types as well as in smooth muscle cells [] and has four or five putative transmembrane regions. Additionally to their role as chloride channels some CLCA proteins function as adhesion molecules and may also have roles as tumour suppressors []. The domain described here is found at the N terminus of CLCAs.
Probab=21.42 E-value=1.2e+02 Score=26.34 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=12.1
Q ss_pred CCcEEEcCceeEEEEEec
Q psy7145 20 STRVARTKYGPLRGILIQ 37 (191)
Q Consensus 20 ~~p~V~t~~G~v~G~~~~ 37 (191)
....|.+.++-+.|+++.
T Consensus 20 ~~s~v~L~nnGYe~vvIA 37 (262)
T PF08434_consen 20 STSLVKLNNNGYEDVVIA 37 (262)
T ss_pred cccEEEecCCCcccEEEE
Confidence 445578887777777653
Done!