RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7145
(191 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 125 bits (315), Expect = 6e-34
Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 23 VARTKYGPLRGILIQNP-----PVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTY 77
+ T +G +RGI + PV +LGVPYA PP G R+ PP PS W R A +
Sbjct: 12 LVTTNFGKIRGIKKELNNEILGPVIQFLGVPYAAPPTGEHRFQPPEPPSPWSDIRNATQF 71
Query: 78 SAVCPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVALEGEK 137
+ VCPQ + D LP L+ + + +QSEDCLYLN+YVP +
Sbjct: 72 APVCPQNIIDGRLPEV---MLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIRDSG 128
Query: 138 K 138
Sbjct: 129 G 129
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 116 bits (293), Expect = 5e-31
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 16 AHKYSTRVARTKYGPLRGILIQ--NPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRF 73
+ + R + G LRGI ++ PV A+LG+P+A PP+GS R+MPP W
Sbjct: 2 GREDPQLLVRVRGGQLRGIRLKAPGGPVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLD 61
Query: 74 ADTYSAVCPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRP 130
A T+ VC Q + + E R SEDCLYLN++ P P
Sbjct: 62 ATTFQNVCYQYVDTLYPGFEGTEMWNPNR------------ELSEDCLYLNVWTPYP 106
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 113 bits (285), Expect = 8e-30
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 20 STRVARTKYGPLRGILIQ--NPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTY 77
S + TK G + G + + + A+LG+P+A PP+G++R+ P W A TY
Sbjct: 4 SELLVNTKSGKVMGTRVPVLSSHISAFLGIPFAEPPVGNMRFRRPEPKKPWSGVWNASTY 63
Query: 78 SAVCPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVA 132
C Q + + R SEDCLYLN++VP P
Sbjct: 64 PNNCQQYVDEQFPGFSGSEMWNPNR------------EMSEDCLYLNIWVPSPRP 106
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 112 bits (283), Expect = 2e-29
Identities = 36/148 (24%), Positives = 51/148 (34%), Gaps = 14/148 (9%)
Query: 23 VARTKYGPLRGILIQ--NPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAV 80
V +T GP+RG + V Y G+PYA PP+ LR+ PV W A SA
Sbjct: 6 VVQTSSGPVRGRSVTVQGREVHVYTGIPYAKPPVEDLRFRKPVPAEPWHGVLDATGLSAT 65
Query: 81 CPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVALEGEKKEK 140
C Q E++ +N SEDCLY+N++ P L +
Sbjct: 66 CVQERY------------EYFPGFSGEEIWNPNTNVSEDCLYINVWAPAKARLRHGRGAN 113
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
K+ +
Sbjct: 114 GGEHPNGKQADTDHLIHNGNPQNTTNGL 141
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 111 bits (279), Expect = 5e-29
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 23 VARTKYGPLRGILIQ--NPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAV 80
+ TK G +RG+ + V A+LG+PYA PPLG LR+ P + + W A Y+
Sbjct: 5 IIATKNGKVRGMQLTVFGGTVTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATKYANS 64
Query: 81 CPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVA 132
C Q + ++ ++ SEDCLYLN+++P P
Sbjct: 65 CCQNIDQSFPG------------FHGSEMWNPNTDLSEDCLYLNVWIPAPKP 104
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 110 bits (276), Expect = 1e-28
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 17 HKYSTRVARTKYGPLRGILIQNP----PVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPR 72
H S V T +G + G + PV +LG+P+A PPLG LR+ PP W +
Sbjct: 1 HPSSPPVVDTVHGKVLGKFVSLEGFAQPVAIFLGIPFAKPPLGPLRFTPPQPAEPWSFVK 60
Query: 73 FADTYSAVCPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPV 131
A +Y +C Q +F + + SEDCLYLN+Y P +
Sbjct: 61 NATSYPPMCTQDPK----------AGQLLSELFTNRKENIPLKLSEDCLYLNIYTPADL 109
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 108 bits (271), Expect = 6e-28
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 24/115 (20%)
Query: 23 VARTKYGPLRGILIQNPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAVCP 82
V T+YG LRG + + V + G+PYA P+G R++PP P W R A ++ V
Sbjct: 5 VVETRYGRLRGEMNE--GVFVWKGIPYAKAPVGERRFLPPEPPDAWDGVREATSFGPVVM 62
Query: 83 QRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVP------RPV 131
Q +F L + SED LYLN++ P RPV
Sbjct: 63 QPSDP----------------IFSGLLGRMSEAPSEDGLYLNIWSPAADGKKRPV 101
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 107 bits (270), Expect = 6e-28
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 26/118 (22%)
Query: 20 STRVARTKYGPLRGILIQNPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSA 79
+ ++ T+YG ++G V + G+PYA PP+G R+ P P W A Y
Sbjct: 2 THQIVTTQYGKVKGT--TENGVHKWKGIPYAKPPVGQWRFKAPEPPEVWEDVLDATAYGP 59
Query: 80 VCPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVP------RPV 131
+CPQ L L QSEDCLY+N++ P PV
Sbjct: 60 ICPQPSD------------------LLSLSYTELPRQSEDCLYVNVFAPDTPSQNLPV 99
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 107 bits (270), Expect = 7e-28
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 8/120 (6%)
Query: 23 VARTKYGPLRGILIQNPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAVCP 82
+ G+L V+ + G+P+A PPL LR+ P + A+ +S C
Sbjct: 5 AVLNGNEVISGVL--EGKVDTFKGIPFADPPLNDLRFKHPQPFTGSYQGLKANDFSPACM 62
Query: 83 QRLP-----DIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVALEGEK 137
Q P + +P L + + +EDCLYLN++ P K
Sbjct: 63 QLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRPAGTK-PDAK 121
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 107 bits (269), Expect = 1e-27
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 23 VARTKYGPLRGILIQNPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAVCP 82
A+ G L EA+LG+P+A PP+G+LR+ PV S + +Y C
Sbjct: 3 TAKLANGDTITGLNAII-NEAFLGIPFAEPPVGNLRFKDPVPYSGSLNGQKFTSYGPSCM 61
Query: 83 QRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPV 131
Q+ P+ E L LV K+ + QSEDCL +N+ P
Sbjct: 62 QQNPE--GTFEENLGKTALDLVMQSKVFQAVLPQSEDCLTINVVRPPGT 108
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 106 bits (266), Expect = 3e-27
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 24/118 (20%)
Query: 14 TSAHKYSTRVARTKYGPLRGILIQNPPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRF 73
T A + V Y +G+ ++ V+ +LG+ YA+PP+G LR+ P P + +
Sbjct: 3 TQASHNAQPVINLGYARYQGVRLEAG-VDEFLGMRYASPPIGDLRFRAPQDPPANQTLQS 61
Query: 74 ADTYSAVCPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPV 131
A Y +C + + SEDCL++N++ P
Sbjct: 62 ATEYGPICIGLDEEESP-----------------------GDISEDCLFINVFKPSTA 96
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 101 bits (253), Expect = 2e-25
Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 22/125 (17%)
Query: 23 VARTKYGPLRGILIQNP---PVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSA 79
V RT+ G +RG+ + ++ GVPYA PLG LR+ W+ A
Sbjct: 9 VVRTESGWIRGLKRRAEGNKSYASFRGVPYAKQPLGELRFKELQPLEPWQDELDATQEGP 68
Query: 80 VCPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVALEGEKKE 139
VC Q G SE C++ N++VP +
Sbjct: 69 VCQQTDVLYGRIMRPR-------------------GMSEACIHANIHVPYYALPRDAADK 109
Query: 140 KKKNK 144
+
Sbjct: 110 NRFAG 114
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 91.3 bits (227), Expect = 7e-22
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 30/112 (26%)
Query: 23 VARTKYGPLRGILIQNP----PVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYS 78
T+ G + G+ + V+ + G+P+A P P W+ A ++
Sbjct: 5 SVYTEGGFVEGVNKKLSLFGDSVDIFKGIPFAAAPKA---LEKPERHPGWQGTLKAKSFK 61
Query: 79 AVCPQRLPDIGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRP 130
C Q L + +EDCLYLN++VP+
Sbjct: 62 KRCLQA-----------------------TLTQDSTYGNEDCLYLNIWVPQG 90
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 43.8 bits (103), Expect = 1e-05
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
++K+++++ KKKKKKKKK+ + PPS P
Sbjct: 73 RSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVP 119
Score = 38.0 bits (88), Expect = 0.001
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
++ ++K +++ + KKKKKKKK + +DP
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDP 115
Score = 33.7 bits (77), Expect = 0.028
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ E+ ++K + + + KKKKKK KK
Sbjct: 67 VARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKK 106
Score = 33.0 bits (75), Expect = 0.050
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
E ++ ++ ++ + + KKKKK KK
Sbjct: 66 EVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKK 105
Score = 33.0 bits (75), Expect = 0.057
Identities = 7/46 (15%), Positives = 21/46 (45%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+++ ++ +++ ++K++ + + KKKK KK
Sbjct: 59 ESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK 104
Score = 29.9 bits (67), Expect = 0.56
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
L G+ + + ++ KKK++KKKK K ++ P SG + + Q
Sbjct: 14 LNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQ--EPDKESGASVDEVARQ 70
Score = 29.5 bits (66), Expect = 0.75
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVK 187
+++E + + KKK++KKKK K +++ K+ D + +
Sbjct: 22 DREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLER 73
Score = 29.1 bits (65), Expect = 0.86
Identities = 10/55 (18%), Positives = 22/55 (40%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKS 188
E N + + +++ ++ KKK++KK K P + + +S
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKES 60
Score = 29.1 bits (65), Expect = 0.87
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 131 VALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSRE 190
VA G + + ++ ++ KKK++KKKK K +P ++G E
Sbjct: 7 VAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDE 66
Query: 191 Q 191
Sbjct: 67 V 67
Score = 29.1 bits (65), Expect = 0.89
Identities = 12/58 (20%), Positives = 24/58 (41%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSRE 190
L+ + +E+ + KKK++KKKK K +++ K S ++
Sbjct: 18 LDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSA 75
Score = 27.6 bits (61), Expect = 2.6
Identities = 9/57 (15%), Positives = 23/57 (40%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSRE 190
+ ++ + KKK++KKKK K +++ + + + + + E
Sbjct: 21 DDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALE 77
Score = 26.0 bits (57), Expect = 9.1
Identities = 10/58 (17%), Positives = 21/58 (36%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
++ K K +KKKK K +++ K+ + + K R++
Sbjct: 26 GAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDE 83
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 37.6 bits (88), Expect = 0.001
Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 126 YVPRPVALEGEKKEKK----KNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
++ P+ + K E + + K++K+ + ++++++KK KTKK
Sbjct: 206 FINFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKV 258
Score = 36.0 bits (84), Expect = 0.004
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 122 YLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
Y+ V E++E K + ++ + ++++++KK K KK +KT
Sbjct: 212 YVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 37.9 bits (87), Expect = 0.001
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+E ++ K N K KK K +K K K K
Sbjct: 276 PVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKS 317
Score = 36.7 bits (84), Expect = 0.002
Identities = 15/59 (25%), Positives = 20/59 (33%)
Query: 115 NQSEDCLYLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
E L + + L E E K++ K K K KK K +K K K
Sbjct: 254 KLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDK 312
Score = 35.2 bits (80), Expect = 0.008
Identities = 16/76 (21%), Positives = 25/76 (32%)
Query: 98 LPRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKK 157
+P+ L K L L + + + K++ K K+ K KK K
Sbjct: 241 IPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKM 300
Query: 158 KKKKKKKKKKKKKTKK 173
+K K K K
Sbjct: 301 TAAQKALAKVDKSGMK 316
Score = 34.4 bits (78), Expect = 0.016
Identities = 12/43 (27%), Positives = 14/43 (32%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
A E K K+ KK K +K K K K F
Sbjct: 279 AKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAF 321
Score = 31.7 bits (71), Expect = 0.11
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGK 183
+K + + K+ K K K KK K +K L D SG
Sbjct: 268 KKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGM 315
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.003
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 134 EGEKKEKKKNKNKNKKKKKK--KKKKKKKKKKKKKKKKKTKKFL 175
K +++ + K KK ++ +++ ++ +K K + K F
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
Score = 34.7 bits (79), Expect = 0.008
Identities = 9/60 (15%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 128 PRPVALEGEK----KEKKKN----KNKNKKKKKKKKKKKKKK------KKKKKKKKKTKK 173
+ E E +E+++ + K +++ ++K KK +++ ++ +K K
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136
Score = 34.4 bits (78), Expect = 0.011
Identities = 7/55 (12%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSRE 190
+ + + + K KK ++ +++ ++ +K K + + KA + +
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI-------ADKAFYQQPD 150
Score = 31.3 bits (70), Expect = 0.14
Identities = 7/44 (15%), Positives = 22/44 (50%)
Query: 127 VPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
+ + L E + +K + + +K+ ++ K +++ ++K K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.003
Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 79/216 (36%)
Query: 36 IQNP---PVEAYL-GVPYATPPLGSL---RYM-----PPVTPSTWRAP------RFADTY 77
++NP P + YL +P + P +G + Y+ TP R+
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 78 SAVCPQRLPD-----------------IGNR----------TEALLQ--------LP--- 99
+AV IG R ++L+ +P
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 100 ---RG-RLVFLEKLLPLLSNQS---EDCLYLNLY-VPR-------PVALEGEKKEKKKNK 144
++ + N + ++L + P +L G +K
Sbjct: 339 LSISNLTQEQVQDYVNKT-NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK-- 395
Query: 145 NKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
K + + ++K K + +FLP + P
Sbjct: 396 -----AKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Score = 35.0 bits (80), Expect = 0.014
Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 52/136 (38%)
Query: 31 LRGILIQNPPVEAYLGVPYATP--PLGSLRY-MPPVTPSTWRAPRFADTYSAVCPQRLPD 87
RG+ +Q A P LG Y M + P A + V +
Sbjct: 1788 YRGMTMQV-----------AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER---- 1832
Query: 88 IGNRTEALLQLPRGRLVFLEKLLPLLSNQSEDCLYLNL----YVPRPVALEGEKK--EKK 141
+G RT L++ +V N Y N+ YV A G+ + +
Sbjct: 1833 VGKRTGWLVE-----IV----------N------Y-NVENQQYV---AA--GDLRALDTV 1865
Query: 142 KNK-NKNKKKKKKKKK 156
N N K +K +
Sbjct: 1866 TNVLNFIKLQKIDIIE 1881
Score = 32.7 bits (74), Expect = 0.067
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 49 YATPPL----GSLRYMPPVTPSTW-RAPRFADTYSAVCPQRLPDIG--NRTEALLQLPRG 101
Y+T PL GSL ++ V +++ A + + ++ + P+ + +L G
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-VG 62
Query: 102 R-LVFLEKLL-PLLSNQSEDCLYLNL 125
+ L ++ L+ P Q + L L L
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCL 88
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 35.9 bits (82), Expect = 0.004
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
KK K + K + ++ +K K+K+ ++ +
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQ 52
Score = 31.7 bits (71), Expect = 0.11
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
E + KK + ++ ++ +K K+K+ ++
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILER 47
Score = 31.3 bits (70), Expect = 0.14
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
E + K+K ++K ++ ++ +K K+K+
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIIL 45
Score = 29.4 bits (65), Expect = 0.59
Identities = 5/38 (13%), Positives = 17/38 (44%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
++K + ++ +K K+K+ ++ K++
Sbjct: 18 AQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEY 55
Score = 28.2 bits (62), Expect = 1.6
Identities = 6/45 (13%), Positives = 19/45 (42%)
Query: 127 VPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
+ P + + K ++K + ++ +K K+K+ ++
Sbjct: 6 ILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAA 50
Score = 27.9 bits (61), Expect = 1.9
Identities = 5/38 (13%), Positives = 17/38 (44%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+K ++ + +K K+K+ ++ +K+ +
Sbjct: 20 QKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYET 57
Score = 27.5 bits (60), Expect = 2.5
Identities = 5/40 (12%), Positives = 17/40 (42%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ ++ + K K+K+ ++ +K+ +T +
Sbjct: 20 QKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAE 59
Score = 27.5 bits (60), Expect = 2.8
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
E+ K NK+K+ ++ +K+ + ++
Sbjct: 27 AAERAARKAANKEKRAIILERNAAYQKEYETAERNII 63
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 36.0 bits (82), Expect = 0.004
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
K +++ +KK+K +K K + K + +++
Sbjct: 16 LKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYA 54
Score = 32.9 bits (74), Expect = 0.044
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K + + +KK+K +K K + K
Sbjct: 15 ILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYA 48
Score = 32.1 bits (72), Expect = 0.082
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
EK K + ++ +KK+K +K K + +
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIY 47
Score = 32.1 bits (72), Expect = 0.089
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
EK K+ + + +KK+K +K K + K +
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Score = 29.8 bits (66), Expect = 0.44
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
+ E ++++ + +KK+K +K K + K
Sbjct: 6 AKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Score = 29.8 bits (66), Expect = 0.48
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 126 YVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
VP V L+ ++E + K K +K K + K + ++ ++
Sbjct: 9 AVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEY 57
Score = 27.9 bits (61), Expect = 2.2
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
E +K + +K K + K + ++ + +
Sbjct: 22 EVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEA 59
Score = 26.3 bits (57), Expect = 6.3
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
E EKK+ K K + K + ++ + + +
Sbjct: 22 EVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQD 61
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 35.5 bits (81), Expect = 0.006
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
KK + K + K +++K + K++K + K +K+
Sbjct: 11 KKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYA 49
Score = 27.8 bits (61), Expect = 2.2
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
EK K K + + + K++K + K +K + +
Sbjct: 17 EKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEA 54
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 35.6 bits (82), Expect = 0.007
Identities = 8/52 (15%), Positives = 28/52 (53%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKS 188
+ K++N+N KKK++++++ + + + K++++++ K +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDD 440
Score = 26.8 bits (59), Expect = 5.2
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
+++++ N K+K+ K K K+
Sbjct: 57 YQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELS 91
Score = 26.4 bits (58), Expect = 7.7
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPP 177
+++ K+K+ K K K +
Sbjct: 55 SAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVIDG 95
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 35.1 bits (81), Expect = 0.008
Identities = 8/34 (23%), Positives = 22/34 (64%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
+ K+N+ + + ++K ++ K K+K +K++ +K
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 34.3 bits (79), Expect = 0.018
Identities = 7/33 (21%), Positives = 21/33 (63%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ +N+K+++ ++K ++ K K+K +K+ +
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 34.0 bits (78), Expect = 0.018
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ +N+ +++ ++K ++ K K+K +K++ K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.035
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
KE +K + +K ++ K K+K +K++ +K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.6 bits (72), Expect = 0.14
Identities = 6/31 (19%), Positives = 20/31 (64%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKK 166
++ +K++ + ++ K K+K +K++ +K+
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.7 bits (67), Expect = 0.50
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKK 163
E +K+ + + K + K K+K +K++ +K+
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.3 bits (66), Expect = 0.66
Identities = 7/33 (21%), Positives = 20/33 (60%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKK 164
A++ +K ++ + + K K+K +K++ +K+
Sbjct: 308 AVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 34.4 bits (78), Expect = 0.012
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPS 178
+ ++ K K+ K KK K ++KKKK+ K K K +
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMA 107
Score = 34.4 bits (78), Expect = 0.012
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPS 178
+KK K K KK K ++KKKK+ K K ++ +
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 33.2 bits (75), Expect = 0.039
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGK 183
+K+ K+ K K ++KKKK+ K K K+++ K K
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVK 119
Score = 32.5 bits (73), Expect = 0.069
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
PRP +KK+ K K KK K ++KKKK+ K K K+++ L
Sbjct: 63 PRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Score = 30.9 bits (69), Expect = 0.21
Identities = 14/65 (21%), Positives = 28/65 (43%)
Query: 123 LNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSG 182
L V V + + + + + ++KK+ K+ K KK K ++KKK +
Sbjct: 45 LTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQ 104
Query: 183 KAGVK 187
+ +K
Sbjct: 105 RMALK 109
Score = 29.0 bits (64), Expect = 0.82
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGK 183
PR ++ K K +KKKK+ K K K+++ K + + + G
Sbjct: 69 PRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGD 124
Score = 27.5 bits (60), Expect = 2.8
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSR 189
+ + ++KK+ K+ K KK K ++ K G + R
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
>2okv_A Probable D-tyrosyl-tRNA(Tyr) deacylase 1; DNA replication, DUE,
ATPase, tRNA deacylase, hydrolase; 2.00A {Homo sapiens}
Length = 209
Score = 33.8 bits (78), Expect = 0.016
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLP---PSDPSGKAG 185
PV +E E + K+ K +K++++K+K + K ++ K D S +G
Sbjct: 140 PVTIELESPAPGTATSDPKQLSKLEKQQQRKEKTRAKGPSESSKERNTPRKEDRSASSG 198
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 33.4 bits (76), Expect = 0.031
Identities = 3/34 (8%), Positives = 11/34 (32%)
Query: 142 KNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
+ + + + + K K+ +K +
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
Score = 32.6 bits (74), Expect = 0.063
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 135 GEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
+ ++ +N++ + K K+ +K
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 32.6 bits (74), Expect = 0.064
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
++ + +N+ + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 32.6 bits (74), Expect = 0.064
Identities = 3/36 (8%), Positives = 11/36 (30%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
+ ++ ++ + K K+ +K
Sbjct: 1 MASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 32.2 bits (73), Expect = 0.093
Identities = 3/35 (8%), Positives = 12/35 (34%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
+ + + + + K K+ +K + +
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVII 38
Score = 31.5 bits (71), Expect = 0.14
Identities = 4/38 (10%), Positives = 9/38 (23%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
+ + + K K+ +K L
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVIIIIL 41
Score = 28.4 bits (63), Expect = 1.4
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 129 RPVALEGEKKEKKKNKNKNKKKKKKKKKKKKK 160
R + ++ KN K+ +K
Sbjct: 5 RRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 26.5 bits (58), Expect = 6.9
Identities = 3/32 (9%), Positives = 11/32 (34%)
Query: 143 NKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
+ + ++ + + + K K+ K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVS 34
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 33.3 bits (77), Expect = 0.032
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 22 RVARTKYGPLRGILIQNPPVEAYL 45
RVA T G L I +QNP +E +
Sbjct: 62 RVAETASGMLNAIGLQNPGLEVIM 85
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 33.0 bits (75), Expect = 0.032
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
LE ++K K+ KK + K+
Sbjct: 156 LEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAAL 197
Score = 31.5 bits (71), Expect = 0.12
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
+ K+K + KK+ KK + K L
Sbjct: 157 EAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQL 194
Score = 29.1 bits (65), Expect = 0.67
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
K + K K + + KK+ KK ++
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESD 189
Score = 27.6 bits (61), Expect = 1.9
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K + K K + KK+ KK +
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAES 188
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 33.3 bits (75), Expect = 0.032
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
KK + + K K+ +KK K +K ++K +K K +
Sbjct: 42 KKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYH 80
Score = 30.6 bits (68), Expect = 0.25
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ V E +KK+ K K+ +KK K +K ++K +K
Sbjct: 30 KKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEK 75
Score = 29.8 bits (66), Expect = 0.42
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
E K K +N + K K+ +KK K +K ++ + + R +
Sbjct: 38 ETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTE 90
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 33.3 bits (76), Expect = 0.041
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
K + K K+ + K KKK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 32.9 bits (75), Expect = 0.044
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
K K + K KKK K K K+ K
Sbjct: 345 VTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 31.0 bits (70), Expect = 0.18
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K + +K+ + K KKK K K K K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 30.3 bits (68), Expect = 0.33
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 135 GEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKK 166
K+K KKK K K K+ K
Sbjct: 348 SLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 29.9 bits (67), Expect = 0.48
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 123 LNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKK 163
L+ + +L K+++ + K KKK K K K+ K
Sbjct: 339 LDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 29.9 bits (67), Expect = 0.54
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 129 RPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKK 164
+ K K+ + KKK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 29.1 bits (65), Expect = 0.86
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKK 167
+ G K+ + + K KKK K K K+ K
Sbjct: 345 VTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 28.7 bits (64), Expect = 1.1
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
V ++K+ + K KKK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 26.0 bits (57), Expect = 9.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 147 NKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
+ K+K+ + K KKK K KF
Sbjct: 348 SLSSAKRKEPEPKGSTKKKAKTGAAGKF 375
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 32.9 bits (74), Expect = 0.049
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 129 RPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLP 176
+ V + +++K K KK KK KK KK KK + P
Sbjct: 365 KGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKP 412
Score = 32.5 bits (73), Expect = 0.065
Identities = 15/48 (31%), Positives = 15/48 (31%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPS 181
KK KK K KK KK KK KK KK
Sbjct: 372 PRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKP 419
Score = 32.2 bits (72), Expect = 0.093
Identities = 18/56 (32%), Positives = 23/56 (41%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
E+K K + KK KK KK KK KK TKK P+ K ++
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 31.8 bits (71), Expect = 0.11
Identities = 20/93 (21%), Positives = 32/93 (34%)
Query: 99 PRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKK 158
P L + KL P + + + + + K++ K KK ++KK
Sbjct: 318 PLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKG 377
Query: 159 KKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
KK KK KK + A K E+
Sbjct: 378 KKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 31.8 bits (71), Expect = 0.12
Identities = 14/57 (24%), Positives = 17/57 (29%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKA 184
+ + KK K KK KK KK KK K P+ K
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKP 419
Score = 30.6 bits (68), Expect = 0.28
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 127 VPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
VP + K+ K K KK KK KK +K
Sbjct: 367 VPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 30.2 bits (67), Expect = 0.45
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPS 178
+ KK K KK KK KK +KK T++ P +
Sbjct: 379 KTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKPAA 421
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 32.9 bits (74), Expect = 0.052
Identities = 7/63 (11%), Positives = 18/63 (28%)
Query: 129 RPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKS 188
E + K+ +K K KK + K ++ + + +
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQ 401
Query: 189 REQ 191
++
Sbjct: 402 GQE 404
Score = 32.9 bits (74), Expect = 0.057
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 120 CLYLNLY--VPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPP 177
LN + + A + + K K + K +K K KK + K +
Sbjct: 330 LFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIA 389
Query: 178 SDPSGKAGVKSREQ 191
A ++ Q
Sbjct: 390 KARQEDADFIAQGQ 403
Score = 26.3 bits (57), Expect = 7.3
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 137 KKEKKKNKNKNKK------------KKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKA 184
E+KKN N K++ KK + K K++ K +K +A
Sbjct: 316 THERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQA 375
Query: 185 GVKSREQ 191
+ + +
Sbjct: 376 WIAAFNK 382
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 31.5 bits (72), Expect = 0.060
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
++ + K+ +K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 31.1 bits (71), Expect = 0.075
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
G KE + K+ +K++ KK K +
Sbjct: 76 HGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 30.8 bits (70), Expect = 0.097
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
K+ + + K+ +K++ KK K
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 28.1 bits (63), Expect = 0.77
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ + + K+ +K++ KK K +
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 27.7 bits (62), Expect = 1.3
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 142 KNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K + K+ +K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.5 bits (59), Expect = 3.3
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
L+ E + K +K++ KK K +
Sbjct: 79 LKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.1 bits (58), Expect = 4.0
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 127 VPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKK 159
+ V E K K++ KK K +
Sbjct: 79 LKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 25.0 bits (55), Expect = 8.7
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K + + K+ +K++ K K
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSK 107
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 31.9 bits (72), Expect = 0.089
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
E+K K+K K +KKK+ + +K+ +K +KK K + L
Sbjct: 157 EEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVL 196
Score = 27.7 bits (61), Expect = 1.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
LE ++KEK K + KK+ + +K+ +K +KK K
Sbjct: 155 TLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYT 193
Score = 27.7 bits (61), Expect = 2.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
E+K+ + +KKK+ + +K+ +K +KK K+
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKY 192
Score = 27.3 bits (60), Expect = 2.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLP 176
+ K K K K +KKK+ + +K+ +K KK
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDK 191
Score = 26.9 bits (59), Expect = 3.3
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 124 NLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGK 183
Y+ R G K + + K+K+K K +KKK+ + +K+ K D +
Sbjct: 135 FAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTE 194
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 32.3 bits (74), Expect = 0.090
Identities = 6/44 (13%), Positives = 18/44 (40%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPP 177
E ++ K + +++ K +++++ + LPP
Sbjct: 730 ESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRTPLPP 773
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 31.8 bits (71), Expect = 0.096
Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 114 SNQSEDCLYLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+N D Y + + E E K + + + + ++ K +++ ++K KK ++
Sbjct: 79 ANGPADG-YAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 137
Query: 174 F 174
+
Sbjct: 138 W 138
Score = 31.4 bits (70), Expect = 0.12
Identities = 5/42 (11%), Positives = 20/42 (47%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
++ + + + ++K KK ++ +++ ++ +K K
Sbjct: 110 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151
Score = 31.0 bits (69), Expect = 0.15
Identities = 8/50 (16%), Positives = 21/50 (42%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPS 181
A +++ + K K ++ +++ ++ +K K + K F D
Sbjct: 118 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 167
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 30.7 bits (69), Expect = 0.11
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
KK K K K+KKKK K K+K K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 30.4 bits (68), Expect = 0.15
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
KK+K + K K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 30.0 bits (67), Expect = 0.19
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
K+ K +K K K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 28.8 bits (64), Expect = 0.48
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
KK+K K K K+KKKK K K+ +K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.3 bits (60), Expect = 1.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKK 166
+K +K K+KKKK K K+K+K
Sbjct: 6 DKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.9 bits (59), Expect = 2.2
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKK 164
+ K K+KKKK K K+K+K
Sbjct: 2 APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.5 bits (58), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKK 167
+ K + K K+KKKK K K+K+K
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 31.8 bits (73), Expect = 0.11
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 126 YVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKK 167
Y+P KE KN KK K K K KK K K
Sbjct: 434 YIPGEPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 29.5 bits (67), Expect = 0.68
Identities = 10/39 (25%), Positives = 12/39 (30%)
Query: 153 KKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
K+ K KK K K K GK G +
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSRHHHH 483
Score = 29.1 bits (66), Expect = 0.88
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
K+ KN KK K K K KK K K
Sbjct: 446 KELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 28.7 bits (65), Expect = 1.3
Identities = 12/39 (30%), Positives = 13/39 (33%)
Query: 135 GEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
GE + K K KK K K K KK K
Sbjct: 437 GEPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 32.1 bits (73), Expect = 0.11
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKA 184
K+ + KK+ K + + + + K P + P
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPE 680
Score = 29.0 bits (65), Expect = 1.0
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
K+ ++K + KK+ K + + S + Q
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQ 675
Score = 28.7 bits (64), Expect = 1.4
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 150 KKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
K K+ ++K + KK+ + K P + G+ +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKA 669
Score = 27.1 bits (60), Expect = 5.0
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K+ K+ ++K + KK+ K
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGP 655
Score = 26.7 bits (59), Expect = 5.8
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
K K+ ++K + KK+ + G +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHA 671
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 31.7 bits (71), Expect = 0.12
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 145 NKNKKKKKKKKKKKKKKKKKKKKKKK 170
KN K KK KK+ +K
Sbjct: 4 GKNPGLKAGGGKKGAKKRTIDPLSRK 29
Score = 31.3 bits (70), Expect = 0.15
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 143 NKNKNKKKKKKKKKKKKKKKKKKKKKK 169
KN K KK KK+ +K+
Sbjct: 4 GKNPGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 30.2 bits (67), Expect = 0.33
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 142 KNKNKNKKKKKKKKKKKKKKKKKKKK 167
KN KK KK+ +K+
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 27.9 bits (61), Expect = 1.8
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 149 KKKKKKKKKKKKKKKKKKKKKKTKK 173
K K KK KK+ ++K
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRK 29
Score = 27.9 bits (61), Expect = 2.1
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 147 NKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
K K KK KK+ K++
Sbjct: 4 GKNPGLKAGGGKKGAKKRTIDPLSRKEW 31
Score = 26.3 bits (57), Expect = 6.5
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKK 165
K KK KK+ +K+
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 30.4 bits (68), Expect = 0.13
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
K+ +K K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 29.2 bits (65), Expect = 0.29
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
K++ K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 27.3 bits (60), Expect = 1.4
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKK 164
+ K K KK KKK KK K +
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 27.3 bits (60), Expect = 1.7
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K + K K KK KKK KK+ K
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMK 33
Score = 26.9 bits (59), Expect = 1.9
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
+++ +K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.9 bits (59), Expect = 2.4
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
++ K K KK KKK +KK
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKK 30
Score = 26.5 bits (58), Expect = 2.6
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K + K KK KKK KK +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.1 bits (57), Expect = 3.9
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKK 166
++ K KK KKK KK K +
Sbjct: 5 QQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 31.1 bits (70), Expect = 0.14
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
LE +++ + K + K K+ +KK+ K K K +F
Sbjct: 155 LEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQF 196
Score = 28.7 bits (64), Expect = 0.91
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
EK++ + K KK K+ +KK+ K K L
Sbjct: 157 EKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKL 193
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 31.7 bits (71), Expect = 0.14
Identities = 13/66 (19%), Positives = 24/66 (36%)
Query: 126 YVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAG 185
Y G++ EK + + K + KK KK+K +++K K+
Sbjct: 795 YPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNK 854
Query: 186 VKSREQ 191
+E
Sbjct: 855 KGIKET 860
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 30.9 bits (69), Expect = 0.16
Identities = 4/41 (9%), Positives = 20/41 (48%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLP 176
+ + + +++ +K + + ++K+ K ++ K+ +
Sbjct: 121 CQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVN 161
Score = 26.3 bits (57), Expect = 6.5
Identities = 4/43 (9%), Positives = 14/43 (32%)
Query: 131 VALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ EK K + + + + + + +K + +
Sbjct: 102 LLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWR 144
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 31.2 bits (70), Expect = 0.16
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+LE + + K +KK K++ + KK + K
Sbjct: 233 ADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTK 276
Score = 28.9 bits (64), Expect = 1.0
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ + +KK K++ + KK ++ K +K+
Sbjct: 248 RADPAFKPTEKKFTKEQYAAESKKYRQTKLSKE 280
Score = 28.5 bits (63), Expect = 1.2
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKK--KKKKKKKKKKKK 170
+ EKK K + + KK ++ K K+++ + K
Sbjct: 252 AFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKI 290
Score = 28.1 bits (62), Expect = 1.7
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
P EKK K+ KK ++ K K+++ + K
Sbjct: 251 PAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAA 292
Score = 27.0 bits (59), Expect = 4.1
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ K KK K++ + KK ++ K K+ +
Sbjct: 248 RADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERA 283
Score = 26.6 bits (58), Expect = 5.5
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ K +K K + + KK ++ K K+++ + K
Sbjct: 250 DPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAK 289
Score = 26.2 bits (57), Expect = 6.8
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
K + K K++ + KK ++ K K+++ +
Sbjct: 249 ADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAAR 285
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 31.4 bits (71), Expect = 0.16
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 22 RVARTKYGPLRGILIQNPPVEAYL 45
R A TK G + + + N + YL
Sbjct: 93 RYADTKLGSINSMGLPNLGINYYL 116
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 30.1 bits (67), Expect = 0.18
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
K K KK K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 30.1 bits (67), Expect = 0.21
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
K K KK K +K K KKKK+K K
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 29.3 bits (65), Expect = 0.40
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ K KK K +K K KKKK+ +K
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 28.9 bits (64), Expect = 0.51
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K K KK K +K K KKKK K+
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKR 31
Score = 28.5 bits (63), Expect = 0.67
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
K + KK K +K K KKKK+K+K++
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKES 34
Score = 28.1 bits (62), Expect = 0.95
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
K K K K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 27.4 bits (60), Expect = 1.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
+ KK K +K K KKKK+K+ + +
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRKRKESY 35
Score = 27.0 bits (59), Expect = 2.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
K K K K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 27.0 bits (59), Expect = 2.6
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTKK 173
K K KK K +K K K KK
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKK 28
Score = 27.0 bits (59), Expect = 2.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKK 166
K K K K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 25.8 bits (56), Expect = 5.3
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKK 167
+ K K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 25.8 bits (56), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 127 VPRPVALEGEKKEKKKNKNKNKKKKKKKKKKK 158
+P + + KK K KN K KKKK+K+K
Sbjct: 1 IPPKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 31.4 bits (70), Expect = 0.19
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 123 LNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
LN Y + + K +K+K K+ K ++ K K K +
Sbjct: 333 LNPYFG---TARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWY 382
Score = 29.0 bits (64), Expect = 0.95
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 127 VPRPVALEGEKKEKKKNKNKNK-------------KKKKKKKKKKKKKKKKKKKKKKTKK 173
V +P+ E +++EK+KN KN +K + + K +K+K K K
Sbjct: 306 VVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTK 365
Query: 174 FLPPSDPSGKAGVKS 188
P KA K+
Sbjct: 366 LSPEEAAKVKAAGKA 380
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 30.7 bits (69), Expect = 0.19
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
E+K K+K K ++K+ K + K +K ++K + L
Sbjct: 162 EEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 201
Score = 28.4 bits (63), Expect = 1.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
LE ++KEK K +K+ K + K +K ++K +
Sbjct: 161 LEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQL 198
Score = 26.9 bits (59), Expect = 3.4
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLP 176
+ + K K K K ++K+ K + K +K +K
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGT 196
Score = 26.9 bits (59), Expect = 3.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
E +EK+K K K ++K+ K + K +K ++K +
Sbjct: 160 ELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQ 197
Score = 26.9 bits (59), Expect = 4.1
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLP 176
+ E+K+ + ++K+ K + K +K ++K L
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLE 199
Score = 26.9 bits (59), Expect = 4.4
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 135 GEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
G + + K+K+K K ++K+ K + K K
Sbjct: 151 GWNYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGT 196
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 30.0 bits (67), Expect = 0.20
Identities = 5/45 (11%), Positives = 17/45 (37%)
Query: 121 LYLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
++ L + +E + + K++ K K+ ++ +
Sbjct: 68 VFCYLLKQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 31.2 bits (70), Expect = 0.21
Identities = 9/54 (16%), Positives = 21/54 (38%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPS 181
+ + + G + +K K + + ++K K + +FLP + P
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 29.8 bits (66), Expect = 0.25
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
+ KK KK K +KK KK+KK K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 29.4 bits (65), Expect = 0.32
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
+ K K KK K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 29.4 bits (65), Expect = 0.34
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
E K+ KK KK K +KK KK+KK + + +
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESY 38
Score = 28.2 bits (62), Expect = 1.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
+ K K KK K +KK KK+KK +K++
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKES 37
Score = 28.2 bits (62), Expect = 1.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
E + K KK K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 26.3 bits (57), Expect = 4.8
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKK 163
P + KK +K K +KK KK+KK +K
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 25.9 bits (56), Expect = 5.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKK 161
P P K+ K +KK KK+KK +K
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 25.5 bits (55), Expect = 8.3
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAG 185
KK KK K +KK KK+KK +K+ K K+ P + S KA
Sbjct: 11 PKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAM 60
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 30.5 bits (68), Expect = 0.27
Identities = 10/83 (12%), Positives = 25/83 (30%)
Query: 109 LLPLLSNQSEDCLYLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
LL L + + L+ + E E ++ + + ++ +K+ + KK K +
Sbjct: 288 LLQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIED 347
Query: 169 KKTKKFLPPSDPSGKAGVKSREQ 191
+
Sbjct: 348 TSNVGTEQLVAEKIPENETTHHH 370
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding
protein, gene regulation; NMR {Homo sapiens} SCOP:
b.40.4.5
Length = 143
Score = 30.0 bits (67), Expect = 0.30
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 142 KNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
KNK K K +++ K + + +K++ K+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
Score = 28.0 bits (62), Expect = 1.1
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
KNK K K +++ K + + +K++ K+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKE 29
Score = 25.7 bits (56), Expect = 6.4
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 152 KKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
K K K K +++ K + + K+ L +
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 29.6 bits (67), Expect = 0.31
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 151 KKKKKKKKKKKKKKKKKKKKTKKFLP 176
K K ++ + +K + + +P
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIP 28
Score = 29.2 bits (66), Expect = 0.45
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTK 172
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 28.0 bits (63), Expect = 1.0
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKK 163
K K +N + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 27.7 bits (62), Expect = 1.4
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKK 167
K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 27.3 bits (61), Expect = 1.9
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTKK 173
K ++ + +K +K K
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.9 bits (60), Expect = 2.7
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKK 170
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.1 bits (58), Expect = 4.4
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKK 166
K K +++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.1 bits (58), Expect = 4.5
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 142 KNKNKNKKKKKKKKKKKKKKKKKKKKK 168
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 5.9
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKK 164
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 29.7 bits (66), Expect = 0.32
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 129 RPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVK 187
+ + +K E +K + K+KK +KK+ +K + K K K G K
Sbjct: 96 KNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
Score = 29.4 bits (65), Expect = 0.45
Identities = 9/56 (16%), Positives = 24/56 (42%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
+++ +K + +K ++ K+KK +KK+ +K + K + +
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTK 148
Score = 29.0 bits (64), Expect = 0.70
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
+K + K + +K ++ K+KK +KK+ K + KA K +Q
Sbjct: 94 RRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
Score = 27.4 bits (60), Expect = 2.1
Identities = 10/56 (17%), Positives = 19/56 (33%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
K K ++ K+KK +KK+ +K K + + + K
Sbjct: 97 NLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVG 152
Score = 26.7 bits (58), Expect = 3.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
EKK+ K + K K KK + KK K+ K K
Sbjct: 120 NDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGK 157
Score = 26.3 bits (57), Expect = 4.8
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSR 189
K+ + K + K+KK +KK+ +K + K K K V ++
Sbjct: 101 SHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
Score = 26.3 bits (57), Expect = 5.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
+K+ +K + K+ K KK + KK K+ K KK
Sbjct: 120 NDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 25.5 bits (55), Expect = 8.9
Identities = 12/59 (20%), Positives = 22/59 (37%)
Query: 129 RPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVK 187
+ E ++ + + K +KK+ +K + K K K + P G G K
Sbjct: 99 DASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGK 157
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 29.8 bits (66), Expect = 0.33
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
K+ K + K + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.8 bits (61), Expect = 1.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K+ + K K+ K + KK KKK K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.1 bits (59), Expect = 2.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 135 GEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
G++ + K K K + KK KKK K K K
Sbjct: 2 GKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 27.1 bits (59), Expect = 2.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 127 VPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKK 164
+ + A +K ++ K KK KKK K K K K
Sbjct: 1 MGKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.1 bits (59), Expect = 2.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 135 GEKKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
G+KK K+ + KK KKK K K K K
Sbjct: 8 GQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 26.3 bits (57), Expect = 4.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 135 GEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKK 166
+K+ K+ K + KK KKK K K K K
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 29.8 bits (67), Expect = 0.33
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
K K + ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 29.5 bits (66), Expect = 0.39
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
K KK K ++ K K K K+K KK +T
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKKIRTS 39
Score = 29.1 bits (65), Expect = 0.50
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 142 KNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K K K ++ K K K K+K+KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 29.1 bits (65), Expect = 0.59
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPP 177
KK + + K K K K+K KK + + F P
Sbjct: 5 AAVKKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHRP 45
Score = 27.1 bits (60), Expect = 2.5
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
A + K+ + K K K K+K KK
Sbjct: 2 APKAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.33
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 160 KKKKKKKKKKKTKKFLPPSDPS 181
+K+ KK + K + S P+
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 29.9 bits (67), Expect = 0.37
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKK 162
+KE+KK +KK+ + +++K ++
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 26.8 bits (59), Expect = 4.7
Identities = 5/28 (17%), Positives = 18/28 (64%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKK 164
+ +K++ K ++KK+ + +++K ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 26.4 bits (58), Expect = 5.9
Identities = 6/29 (20%), Positives = 20/29 (68%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
+ +K++KK+ ++KK+ + +++K + +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDY 130
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 29.6 bits (66), Expect = 0.43
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
+KK +K + ++ ++ ++ K++ KK K +KK K + S + G ++
Sbjct: 94 QKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRG 149
Score = 28.5 bits (63), Expect = 1.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
E KE+ K KK KK + K +K + K ++ K
Sbjct: 114 EIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAK 151
Score = 27.3 bits (60), Expect = 2.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVK 187
+E K+ K K +KK KK + K +K + K T++ G G +
Sbjct: 112 LREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGKR 162
Score = 27.3 bits (60), Expect = 2.1
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
+K + ++ + ++ K++ KK K +KK KK + K G ++
Sbjct: 98 SEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGP 153
Score = 26.9 bits (59), Expect = 2.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
EK E + + ++ K++ KK K +KK KK + K
Sbjct: 95 KKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKS 136
Score = 26.9 bits (59), Expect = 3.2
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
+K+ +K ++ ++ K++ KK K +KK K + K G R
Sbjct: 95 KKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGA 150
Score = 26.6 bits (58), Expect = 4.2
Identities = 11/60 (18%), Positives = 28/60 (46%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
++ ++ EK + ++ ++ ++ K++ KK K +KK KK + S + +
Sbjct: 92 VIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAK 151
Score = 26.6 bits (58), Expect = 4.4
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSR 189
+ + ++ K++ KK K +KK KK + K++K + + +
Sbjct: 101 PEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPK 154
Score = 26.2 bits (57), Expect = 5.8
Identities = 11/61 (18%), Positives = 27/61 (44%)
Query: 131 VALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSRE 190
LE +K++ + ++ ++ K++ KK K +KK KK ++ + +
Sbjct: 88 ATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQ 147
Query: 191 Q 191
+
Sbjct: 148 R 148
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 29.5 bits (66), Expect = 0.48
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
EK++ K +++ +KKK +KK KK+K +
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMAR 183
Score = 28.7 bits (64), Expect = 0.75
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
EK++ + +KKK +KK KK+K ++
Sbjct: 152 EKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 26.8 bits (59), Expect = 3.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K + K +++ +KKK +KK KK+K
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKLMA 182
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 29.2 bits (65), Expect = 0.48
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPP 177
+K + K K+K K+ K K +KK T +
Sbjct: 96 GEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQS 137
Score = 28.0 bits (62), Expect = 1.2
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKK 167
++ K+ K K K+ K K +KK
Sbjct: 99 PNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTW 132
Score = 26.1 bits (57), Expect = 5.9
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 129 RPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
+ L + ++ K +K K+ K K +KK
Sbjct: 91 KVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWA 133
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 29.8 bits (66), Expect = 0.48
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
KK+ + + + + + K ++ K+
Sbjct: 238 KKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 27.1 bits (59), Expect = 3.6
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
KK+ + + + + K ++ K+
Sbjct: 238 KKDDAQGRTLRDVGELTRSSTKTRRSIKR 266
Score = 27.1 bits (59), Expect = 3.6
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKK 167
K + + + + + K ++ K+
Sbjct: 239 KDDAQGRTLRDVGELTRSSTKTRRSIKR 266
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 29.3 bits (65), Expect = 0.50
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLP 176
KE KK K +KK K K K+K K K P
Sbjct: 111 AAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP 151
Score = 28.9 bits (64), Expect = 0.67
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
K+ +K K ++++ + K+ KK K+ KK P+ + K + +
Sbjct: 92 AKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVK 147
Score = 28.9 bits (64), Expect = 0.75
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 129 RPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
R A+ K+ KK + K K K K+K K
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVS 149
Score = 28.1 bits (62), Expect = 1.1
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
A +K E +K + + + K+ KK K+ KK VK
Sbjct: 92 AKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP 151
Score = 27.3 bits (60), Expect = 2.5
Identities = 8/49 (16%), Positives = 19/49 (38%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKA 184
K +K + + ++++ + K+ KK K+ KK +
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPK 139
Score = 26.6 bits (58), Expect = 3.9
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
K+ K + +K ++++ + K+ KK K+ K P+ A + +
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVK 144
Score = 26.6 bits (58), Expect = 4.3
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVK 187
K ++++ K+ KK K+ KK K K P + +
Sbjct: 101 RKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
Score = 26.6 bits (58), Expect = 4.3
Identities = 13/52 (25%), Positives = 17/52 (32%)
Query: 129 RPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
A + K K K+ KK K K K+K K + S P
Sbjct: 100 VRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP 151
Score = 26.6 bits (58), Expect = 4.7
Identities = 10/60 (16%), Positives = 24/60 (40%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
+ ++ +K + + +++ + K+ KK K+ KK P + VK +
Sbjct: 89 DIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKV 148
Score = 26.2 bits (57), Expect = 6.0
Identities = 10/60 (16%), Positives = 23/60 (38%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
+L ++ + K ++++ + K+ KK K+ KKT + K +
Sbjct: 86 SLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKP 145
Score = 25.8 bits (56), Expect = 7.9
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
++ KK K K K+K K K + K
Sbjct: 119 KQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGK 156
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 29.7 bits (66), Expect = 0.51
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
E K KK +K K KK K ++K + K K
Sbjct: 259 ERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKF 295
Score = 28.5 bits (63), Expect = 1.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
KN + K KK K K+ KK K T
Sbjct: 256 KNPERVKSTKKNDKPKRDHKKFYPTKLTAA 285
Score = 25.8 bits (56), Expect = 8.8
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K K +K K+ KK K ++K + K
Sbjct: 261 VKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTK 294
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 29.6 bits (66), Expect = 0.56
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKK 162
++EKK ++ K +KK K+K+ + +
Sbjct: 113 VQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 26.5 bits (58), Expect = 6.4
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKK 164
+++K ++ K++KK K+K+ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 26.5 bits (58), Expect = 6.5
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
+++KK + K++KK K+K+ + + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEPY 140
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 29.6 bits (66), Expect = 0.57
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
EKK KK+ K K + K +KK + +KK
Sbjct: 254 EKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRA 290
Score = 28.9 bits (64), Expect = 0.97
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
KK + +KK KK+ KKK+ + K KK
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKK 277
Score = 28.9 bits (64), Expect = 1.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
E +K K KKK+ + K +KK + +K FL
Sbjct: 249 ENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFL 288
Score = 28.5 bits (63), Expect = 1.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKK 167
P +E K+ +N +KK KK+ KKK+ + K
Sbjct: 233 PDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPK 270
Score = 28.1 bits (62), Expect = 1.9
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
++K K + K K+ + K +KK + +KK +
Sbjct: 252 VYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLR 289
Score = 28.1 bits (62), Expect = 2.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
PV + KKE KK + K +KK + +KK + + +
Sbjct: 251 PVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
Score = 27.7 bits (61), Expect = 2.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+E + K KK+ KKK+ + K +KK + +K
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQK 283
Score = 27.3 bits (60), Expect = 2.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
E+ KK + + +KK KK+ KKK+ + K +
Sbjct: 237 EEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLA 274
Score = 26.9 bits (59), Expect = 3.7
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKK-----KKKKKKTKK 173
+ + +KK KK+ KKK+ + K KK + KK
Sbjct: 242 KAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKK 284
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 29.2 bits (65), Expect = 0.59
Identities = 8/42 (19%), Positives = 11/42 (26%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVK 187
+ K K K +K KF P D +
Sbjct: 22 RRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVST 63
Score = 26.9 bits (59), Expect = 3.9
Identities = 6/41 (14%), Positives = 10/41 (24%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPP 177
+ K K +K + K K + P
Sbjct: 27 AIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPH 67
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 29.6 bits (66), Expect = 0.59
Identities = 5/47 (10%), Positives = 12/47 (25%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGK 183
+ + + K+ + + K + P D S
Sbjct: 310 ENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYPYGDYSSI 356
Score = 25.7 bits (56), Expect = 9.5
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
EKK+ +K K K + K K K+ +
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECIS 331
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 29.6 bits (66), Expect = 0.61
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
+E K+ + K KK+ K+ KK
Sbjct: 233 ADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKK 271
Score = 27.7 bits (61), Expect = 2.4
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
++ + E K + K KK+ K+ KK
Sbjct: 231 IDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKK 271
Score = 27.7 bits (61), Expect = 2.5
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
K K + K+ KK +++K ++
Sbjct: 254 AKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289
Score = 27.3 bits (60), Expect = 3.7
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
P + KKE +K N KK +++K ++
Sbjct: 251 PTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGA 294
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 28.9 bits (63), Expect = 0.63
Identities = 3/43 (6%), Positives = 8/43 (18%)
Query: 127 VPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
V ++ K + K + +
Sbjct: 94 VGYDRIRAYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 26.2 bits (56), Expect = 4.4
Identities = 3/33 (9%), Positives = 8/33 (24%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
+E K + + K + +
Sbjct: 104 EENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 29.2 bits (65), Expect = 0.65
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 152 KKKKKKKKKKKKKKKKKKKTKKFLPPSDPSG 182
KK+ KK K KK K + + K D +G
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAG 144
Score = 27.7 bits (61), Expect = 2.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
+ N + KK+ KK K KK K + ++K +
Sbjct: 107 RANMDGLKKRDKKNKSKKSKPAQGGEQKLIS 137
Score = 26.1 bits (57), Expect = 8.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTKK 173
K+ KK K KK K + ++K +
Sbjct: 115 KRDKKNKSKKSKPAQGGEQKLISEED 140
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 29.3 bits (65), Expect = 0.66
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKK 169
KNK+ K KK +KK+ +K+
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKE 28
Score = 28.6 bits (63), Expect = 1.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKK 167
KNK K KK +KK+ +K+
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKE 28
Score = 27.4 bits (60), Expect = 2.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 142 KNKNKNKKKKKKKKKKKKKKKKKK 165
KNK +K KK +KK+ +K+
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKE 28
Score = 26.2 bits (57), Expect = 6.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKK 170
K K+ K KK +KK+ +K
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRK 27
Score = 25.9 bits (56), Expect = 9.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 151 KKKKKKKKKKKKKKKKKKKKTKK 173
K K+ K KK +KK+ T+K
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRK 27
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 28.4 bits (63), Expect = 0.68
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 142 KNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
KNK K K +++ K + K++ K++ +++
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKEEGQEY 35
Score = 26.1 bits (57), Expect = 4.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 152 KKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
K K K K +++ K + K+ L +
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKEE 31
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 28.9 bits (65), Expect = 0.72
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPP 177
+ ++ K +++ +KK + K P
Sbjct: 129 AAASVVAREMKIVTERRAEKKADSRVTYSKMFQP 162
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 28.6 bits (64), Expect = 0.73
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
+K + + K+++ K +K K + K ++
Sbjct: 98 LTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRS 137
Score = 27.4 bits (61), Expect = 2.1
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKK 167
E ++K + + + K+++ K +K K
Sbjct: 97 ELTTEKKARRPTRPTRASKERRLASKAQKSSVKA 130
Score = 26.3 bits (58), Expect = 4.2
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
L EKK ++ + K+++ K +K K + K
Sbjct: 97 ELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGK 134
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD,
WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Length = 195
Score = 29.0 bits (64), Expect = 0.76
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 131 VALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
V LEG+ K +K K K K +K KKK+ K + K+
Sbjct: 145 VTLEGQMYPGKGGGSKEKNKTKPEKAKKKEGDPKPRASKE 184
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 28.6 bits (64), Expect = 0.76
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 149 KKKKKKKKKKKKKKKKKKKKKKTKKF 174
KK +K+ F
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
Score = 28.3 bits (63), Expect = 1.0
Identities = 3/25 (12%), Positives = 6/25 (24%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTK 172
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 27.9 bits (62), Expect = 1.2
Identities = 3/25 (12%), Positives = 5/25 (20%)
Query: 152 KKKKKKKKKKKKKKKKKKKTKKFLP 176
KK +K+
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENV 27
Score = 26.7 bits (59), Expect = 3.1
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 147 NKKKKKKKKKKKKKKKKKKKKKK 169
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 26.3 bits (58), Expect = 4.4
Identities = 2/23 (8%), Positives = 5/23 (21%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKK 168
K +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 28.8 bits (64), Expect = 0.88
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 124 NLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
N Y P +E EK++ K +KK + +++ + +K+
Sbjct: 137 NKYESSPSHIELVVTEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 28.5 bits (63), Expect = 0.91
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVK 187
++ + K + + N+++K K K+KKK +K +K +K K S K K
Sbjct: 89 LIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAK 144
Score = 27.8 bits (61), Expect = 1.7
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSR 189
K K+ K K +K +K K + K K++ K K SR
Sbjct: 110 KANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQ------KVAATSR 155
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.3 bits (65), Expect = 0.92
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
KKE+ + ++ K K K K K KK + K K
Sbjct: 479 AKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKA 516
Score = 29.0 bits (64), Expect = 1.1
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
A + + + +++ K K K K KK + KKK +
Sbjct: 479 AKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQR 519
Score = 28.2 bits (62), Expect = 1.7
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKK 162
+ E +K +K +K K K++ +K K+
Sbjct: 137 AQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 27.8 bits (61), Expect = 2.3
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
+ K K + K K KK + KKK ++ +++ K +
Sbjct: 487 ARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 529
Score = 27.8 bits (61), Expect = 2.6
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
E+ + K+ K K K K KK + KKK ++
Sbjct: 482 EQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRL 520
Score = 27.0 bits (59), Expect = 4.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVK 187
K K K K KK + KKKK KK++ +K+ + G+K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIK 42
Score = 26.6 bits (58), Expect = 5.4
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
K KNK+K+KK + KKKK KK++++K K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWK 30
Score = 26.6 bits (58), Expect = 5.5
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPS 178
E K+K + + + K + + +++ K+ +L P
Sbjct: 511 ESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPR 553
Score = 26.6 bits (58), Expect = 5.5
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
L+ + KK+ ++ K K K K K KK
Sbjct: 472 NLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVV 510
Score = 26.6 bits (58), Expect = 6.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
K KNK K KK + KKKK KK++++ K+
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKW 31
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 28.4 bits (63), Expect = 0.96
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
E +K+ K+ KN+ KK + KK K KKK
Sbjct: 107 EKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
Score = 27.6 bits (61), Expect = 1.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
K EK + + K +K + KK + KK K KKK
Sbjct: 104 TKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
Score = 26.9 bits (59), Expect = 3.1
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 122 YLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
Y P+ + K + K K++K + KK + KK K KK
Sbjct: 87 AAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 198
Score = 28.8 bits (64), Expect = 0.97
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ +K +K+ N + K + + +
Sbjct: 43 ISSKKLHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAP 83
Score = 26.1 bits (57), Expect = 7.0
Identities = 4/43 (9%), Positives = 11/43 (25%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
++ + K + + + T + S P
Sbjct: 51 QKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPTTEEAATSQP 93
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 28.4 bits (63), Expect = 0.98
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
+ ++++K+ KN++KK K+ KK ++
Sbjct: 102 KASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 26.8 bits (59), Expect = 2.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 135 GEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
EK EK + + +KK + KK K+ KK ++
Sbjct: 97 AEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132
Score = 26.8 bits (59), Expect = 2.7
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
E +K ++ + + K + KK K+ KK ++
Sbjct: 98 EKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 26.5 bits (58), Expect = 3.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 135 GEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
G ++ +K + +K+KK + KK K+ KK +
Sbjct: 95 GLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 28.3 bits (63), Expect = 1.1
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
K+NK + K K K KK K K T
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHKTYTG 34
Score = 26.7 bits (59), Expect = 3.5
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 145 NKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
NK K + K K K KK K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHK 30
Score = 25.6 bits (56), Expect = 7.7
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKK 164
K+ K + NK K K KK K K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHK 30
Score = 25.2 bits (55), Expect = 9.7
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKK 166
++ K + NK K K KK K K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHK 30
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct
genomics, riken structural genomics/proteomics
initiative; NMR {Mus musculus} SCOP: b.34.13.3
Length = 133
Score = 28.2 bits (62), Expect = 1.1
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
+ +K K ++ ++ ++K + +K+K + +K DP+ A K
Sbjct: 75 DAVQKNSEKYLSELAEQPERKITRNQKRKHDEINHVQKTYAEMDPTTAALEKESGP 130
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 28.8 bits (64), Expect = 1.1
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGK 183
+ + +K K K K KK +KKK K K+ + K + P GK
Sbjct: 59 QKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCIFPVMLDGK 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 1.1
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 23/105 (21%)
Query: 20 STRVARTKYGPLRGILIQNPP--VEAYLG-----------VPYAT----PPLGSLRYMPP 62
V+ T L L+ V+ ++ P T P + + Y+
Sbjct: 58 KDAVSGTLR--LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 63 VTPSTWRAPRFADTYSAVCPQRLPDIGNRTEALLQLPRGRLVFLE 107
+ + Y+ V RL +ALL+L + V ++
Sbjct: 116 RDR-LYNDNQVFAKYN-VS--RLQPYLKLRQALLELRPAKNVLID 156
Score = 28.3 bits (62), Expect = 1.8
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 21/101 (20%)
Query: 92 TEALLQLPRGRLVFLEKLLPLLSNQSEDCL--YLNLYV-----------PRPVALEGEKK 138
T+ L + + L ++ + L YL+ PR +++ E
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSD 179
N K K + + L P++
Sbjct: 338 RDGLATWDN--------WKHVNCDKLTTIIESSLNVLEPAE 370
Score = 26.4 bits (57), Expect = 8.6
Identities = 29/177 (16%), Positives = 44/177 (24%), Gaps = 48/177 (27%)
Query: 33 GILIQNPPVEAYLGVPYATPPLG-SLRYMPPVTPSTWRAPRFADTYSAVCPQRLPDIGNR 91
Q+ P E P + S+R +TW D + V +L I
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDG----LATW------DNWKHVNCDKLTTI--I 359
Query: 92 TEALLQLP----RGRL----VFLE------KLLPLLSNQSEDCLYLNLYVPRPVALEGEK 137
+L L R VF LL L+ V + K
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------SDVMVVVNKLHK 413
Query: 138 KE--KKKNKNKN--------KKKKKKKKKKKKKKK-----KKKKKKKKTKKFLPPSD 179
+K+ K + K K + + + K P D
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
>2vtw_A Fiber protein 2; viral protein, CELO, short fibre head; 2.00A {Fowl
adenovirus 1}
Length = 205
Score = 28.3 bits (62), Expect = 1.2
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 26 TKYGPLRGILIQNPPVEAYLGVPYATPPLGSLRYMPPVTPSTW 68
T + P R I P +PY G L P+ +
Sbjct: 101 TSFEPARNP-ISPPVFNMNQNIPYYASRFGVLESYRPIFTGSL 142
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection,
cytoplasm, cytoskeleton, membrane, phosphoprotein,
structural protein; NMR {Mus musculus}
Length = 128
Score = 27.8 bits (61), Expect = 1.2
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 120 CLYLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
C + + +L E E+KK++ +K K + +KK +K K+K T
Sbjct: 42 CARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 28.8 bits (64), Expect = 1.2
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLP 176
K+E K + ++ +K K + K K + KK+
Sbjct: 533 KEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSE 572
Score = 26.5 bits (58), Expect = 6.6
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
+KK+ NK K+ ++ +K K + K K + +L
Sbjct: 530 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYL 567
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 28.3 bits (64), Expect = 1.2
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
K+ + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.9 bits (63), Expect = 1.7
Identities = 2/28 (7%), Positives = 12/28 (42%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ + + + + +K+ + K+ +
Sbjct: 164 REAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.9 bits (63), Expect = 1.8
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 149 KKKKKKKKKKKKKKKKKKKKKKTKKFL 175
K++ + + + + +K+ + K L
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKEL 189
Score = 27.5 bits (62), Expect = 2.2
Identities = 3/26 (11%), Positives = 13/26 (50%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTKK 173
K++ + + + + +K+ + K+
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKE 188
Score = 26.8 bits (60), Expect = 4.2
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
K K++ + + + + +K+ + K+ +
Sbjct: 161 KPKREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.0 bits (58), Expect = 7.0
Identities = 2/27 (7%), Positives = 11/27 (40%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKK 170
+ + + + + +K+ + K+
Sbjct: 164 REAFLEANRAELVRFQKEARALLKELS 190
Score = 25.6 bits (57), Expect = 9.2
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
K+E N+ + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 27.7 bits (61), Expect = 1.4
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
KK K ++ K +K K +K +
Sbjct: 62 KKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAA 95
Score = 27.3 bits (60), Expect = 1.6
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
+ KK K+ + + K +K K +K + K
Sbjct: 55 AASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAA 95
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 28.3 bits (62), Expect = 1.5
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 109 LLPLLSNQSEDCLYLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
+ PL E + VA + +K K+ K ++ KKK K +KK KK
Sbjct: 108 INPLQEQMEEW---------KKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVD 158
Query: 169 KKTKKFLPPSDPSGKAGVKSREQ 191
+ + + P S V +
Sbjct: 159 AQGRGDIQPQLDSALQDVNDKYL 181
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 28.3 bits (63), Expect = 1.5
Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 137 KKEKKKNKNKNKKKKKKKKKK-----KKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSRE 190
K + + + +++ ++KK ++ +++ K K + P+D K KS
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNT 325
Score = 27.6 bits (61), Expect = 3.0
Identities = 8/48 (16%), Positives = 21/48 (43%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
NK K + +++ +++ ++KK F ++ KA ++
Sbjct: 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSG 309
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 28.3 bits (64), Expect = 1.5
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPS 181
+N ++K+ + K+ + ++ P D
Sbjct: 461 RNIENWVQRKRPGSPAAQASKRASEMACQQPTQPPDAD 498
Score = 27.9 bits (63), Expect = 2.1
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSD 179
++N ++K+ + K+ + + P +D
Sbjct: 459 PQRNIENWVQRKRPGSPAAQASKRASEMACQQPTQPPDAD 498
Score = 27.5 bits (62), Expect = 2.8
Identities = 2/33 (6%), Positives = 11/33 (33%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
++K+ + K+ + ++ +
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQPPDADQT 500
Score = 27.5 bits (62), Expect = 2.9
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSG 182
+N + ++K+ + K+ + P P
Sbjct: 461 RNIENWVQRKRPGSPAAQASKRASEMACQQPTQPPDA 497
Score = 27.1 bits (61), Expect = 3.6
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
+K+ + K+ + ++ T+ P
Sbjct: 469 RKRPGSPAAQASKRASEMACQQPTQPPDADQTP 501
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.5 bits (64), Expect = 1.6
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSD 179
K + +KK+KK+ + KKK + + + + +D
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTD 513
Score = 28.1 bits (63), Expect = 1.9
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 127 VP---RPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
VP + G ++ K +++ KK+KK+ + KKK +
Sbjct: 452 VPEKLKEFMPPGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVT 501
Score = 27.4 bits (61), Expect = 3.2
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 152 KKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSRE 190
K +++ KK+KK+ + +KK D + + +++ E
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 26.2 bits (58), Expect = 8.7
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 128 PRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
P P+ E KK+KK+++ KK + + + + +
Sbjct: 473 PAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase;
2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A*
2x6j_A* 2x6k_A*
Length = 696
Score = 28.3 bits (62), Expect = 1.6
Identities = 10/46 (21%), Positives = 15/46 (32%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGK 183
K K KK +K +K ++ K + P DP
Sbjct: 363 KLVAKEPGNRNKKTEKFQKLLAEQDMFKVNFTNFEPIPFPLDPEIY 408
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 28.2 bits (63), Expect = 1.7
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
P + K E + + K + +K +KKKKKK K +
Sbjct: 344 PFEPDLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAEN 387
Score = 27.8 bits (62), Expect = 2.0
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP 180
K + + ++ K + +K +KKKKKK KT + +
Sbjct: 351 KSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGET 393
Score = 27.8 bits (62), Expect = 2.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKK 167
+ E K + +K +KKKKKK K +
Sbjct: 357 QDAELKALLQSSASRKTQKKKKKKASKTAENA 388
Score = 26.6 bits (59), Expect = 5.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTKK 173
+K +KKKKKK K + +T +
Sbjct: 370 SRKTQKKKKKKASKTAENATSGETLE 395
Score = 26.3 bits (58), Expect = 6.4
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K + + ++ +KKKKKK K + + + +
Sbjct: 362 KALLQSSASRKTQKKKKKKASKTAENATSGETLEENE 398
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 28.3 bits (64), Expect = 1.9
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
++ ++K+ + + + + ++KK KK
Sbjct: 205 IDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 27.1 bits (61), Expect = 3.7
Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKK----KKKKKKKTKKFLPP 177
+ + + + K + K+ + + +KK K P
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFAPPEP 244
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.2 bits (62), Expect = 1.9
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
L+ E K+ K + + + + + K+ K+KK
Sbjct: 389 LDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 27.6 bits (62), Expect = 2.0
Identities = 4/22 (18%), Positives = 15/22 (68%)
Query: 150 KKKKKKKKKKKKKKKKKKKKKT 171
+ ++ K+K +++ +K+K++
Sbjct: 171 RLRRDSKEKNERRLAYQKRKES 192
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 27.9 bits (62), Expect = 2.0
Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 10/48 (20%)
Query: 44 YLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAVCPQRLPDIGNR 91
LG+PY + P PS + P P I
Sbjct: 115 KLGIPYFY-----AFHCPSYVPSPYYPPPP-----LGEPSTQDTIDIP 152
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 27.5 bits (61), Expect = 2.1
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
K KK+ K + K K K KK K K KK
Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKK 39
Score = 25.6 bits (56), Expect = 9.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
A + +K+ K + K K K KK K KKKK
Sbjct: 2 APKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKK 39
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.5 bits (62), Expect = 2.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 148 KKKKKKKKKKKKKKKKKKKKKKKTKK 173
K+KK +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHH 180
Score = 25.9 bits (58), Expect = 7.9
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKK 167
K+ K + + K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 25.6 bits (57), Expect = 9.9
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKK 169
+ K +K+ K+ +KK+K K +
Sbjct: 156 RKKFEKELKELQKKQKHKLEHHHHHH 181
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
3pi6_A
Length = 301
Score = 27.6 bits (62), Expect = 2.3
Identities = 4/18 (22%), Positives = 7/18 (38%), Gaps = 2/18 (11%)
Query: 67 TWR--APRFADTYSAVCP 82
W P A ++ + P
Sbjct: 45 EWHQLMPELAKRFTVIAP 62
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta
hydrolase, hydrolase; 1.05A {Rhodopseudomonas
palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A
3r41_A 3r3y_A
Length = 306
Score = 27.6 bits (62), Expect = 2.4
Identities = 4/18 (22%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 67 TWR--APRFADTYSAVCP 82
W AP+ A+ + +
Sbjct: 48 MWHRVAPKLAERFKVIVA 65
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 27.1 bits (61), Expect = 2.6
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKK 167
K K + K + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 26.3 bits (59), Expect = 5.3
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKK 169
K K + K + + K +
Sbjct: 161 KKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 26.0 bits (58), Expect = 6.5
Identities = 2/22 (9%), Positives = 6/22 (27%)
Query: 149 KKKKKKKKKKKKKKKKKKKKKK 170
+ K + + K +
Sbjct: 165 RPKLNELIRDYKATHSLEHHHH 186
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 27.5 bits (61), Expect = 2.7
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 39 PPVEAYLGVPYATPPLGSLRYMPPVTPSTWRAPRFADTYSAVCPQRLPDIGNRTEALLQL 98
+ LG+PY P PS ++ D Y+ + D N A + L
Sbjct: 109 RSMAEKLGIPYR-----YTVLSPDHLPS-EQSQAERDMYNQGADRLFGDAVNSHRASIGL 162
Query: 99 PRGRLVFLEKLLPLL 113
P ++
Sbjct: 163 PPVEHLYDYGYTDQP 177
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 26.7 bits (58), Expect = 2.7
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 142 KNKNKNKKKKKKKKKKKKKKKKKKKKK 168
K + N +K+++ +K +++ + K +
Sbjct: 76 KYVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 25.5 bits (55), Expect = 5.4
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKK 166
K + N K+++ +K +++ + K +
Sbjct: 76 KYVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 25.1 bits (54), Expect = 9.4
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
E + K + +K+++ +K +++ + K +
Sbjct: 70 PESRVLKYVDTNLQKQRELQKANQEQYAEGKMR 102
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 27.7 bits (61), Expect = 3.0
Identities = 7/54 (12%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 137 KKEKKKNKNKNKKKKKKKKK-------KKKKKKKKKKKKKKTKKFLPPSDPSGK 183
+ + + K K+ ++ ++ K ++ K++ K K + K
Sbjct: 388 RLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEK 441
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold,
epoxide degradation, epichlorohydrin; 2.10A
{Agrobacterium tumefaciens} SCOP: c.69.1.11
Length = 294
Score = 27.2 bits (61), Expect = 3.1
Identities = 4/18 (22%), Positives = 6/18 (33%), Gaps = 2/18 (11%)
Query: 67 TWR--APRFADTYSAVCP 82
W A+ Y + P
Sbjct: 44 EWSKVIGPLAEHYDVIVP 61
>3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A
{Burkholderia SP} PDB: 1y37_A
Length = 304
Score = 27.2 bits (61), Expect = 3.6
Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 67 TWR--APRFADTYSAVCP 82
W AP A+ Y+ VC
Sbjct: 40 MWARVAPLLANEYTVVCA 57
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 27.1 bits (60), Expect = 3.6
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTK 172
KKE + ++ K+ K +KK+ + K K +
Sbjct: 234 KKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGE 269
Score = 26.3 bits (58), Expect = 7.1
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
K+K+ ++ K+ K +KK+ + K K
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGE 269
Score = 26.3 bits (58), Expect = 7.3
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
K K K+ + + K+ K +KK++ ++
Sbjct: 224 KNYSNFILIKKKEYQSLNSQYDMNYKETKAEKKESPEYF 262
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.4 bits (61), Expect = 3.7
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
L ++E K N+ +++ K +K+ + + +KK ++
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012
Score = 27.4 bits (61), Expect = 4.2
Identities = 5/42 (11%), Positives = 17/42 (40%)
Query: 132 ALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
LE + + ++ ++ K+ K +K + + + +
Sbjct: 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 26.6 bits (58), Expect = 3.9
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 143 NKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
K + ++ + + KK+ K
Sbjct: 13 RKLRVHRRNNRWAENNYKKRLLGTAFKS 40
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 25.8 bits (57), Expect = 4.0
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
KN K KK+ +++ +K K K +
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEFDL 31
Score = 24.6 bits (54), Expect = 8.9
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 152 KKKKKKKKKKKKKKKKKKKTKKF 174
K K KK+ +++ +K K
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKA 24
>3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP}
Length = 291
Score = 26.8 bits (60), Expect = 4.0
Identities = 5/18 (27%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 67 TWR--APRFADTYSAVCP 82
W AP A+ ++ V
Sbjct: 40 MWHKIAPLLANNFTVVAT 57
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 27.1 bits (59), Expect = 4.1
Identities = 4/48 (8%), Positives = 17/48 (35%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGK 183
+ + + + + ++ KK +++++ L G+
Sbjct: 83 RAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGR 130
Score = 26.3 bits (57), Expect = 6.1
Identities = 3/36 (8%), Positives = 12/36 (33%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
++ + + + + ++ KKT +
Sbjct: 82 QRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQR 117
Score = 26.3 bits (57), Expect = 6.9
Identities = 4/53 (7%), Positives = 15/53 (28%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSRE 190
+ + + + + + ++ KK + S + + E
Sbjct: 83 RAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPYE 135
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair,
DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A*
3s4w_A
Length = 1308
Score = 27.2 bits (59), Expect = 4.4
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 1/75 (1%)
Query: 105 FLEKLLPLLSNQSEDCLYLNLY-VPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKK 163
F + + N CL + + V K K + KK +K
Sbjct: 728 FSQNTNVGIKNNICACLIMGVCEVLMEYNFSISNFSKSKFEEILSLFTCYKKFSDILSEK 787
Query: 164 KKKKKKKTKKFLPPS 178
K K K + S
Sbjct: 788 AGKGKAKMTSKVSDS 802
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics,
protein initiative; 2.04A {Lactobacillus salivarius}
Length = 177
Score = 26.5 bits (59), Expect = 4.7
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 149 KKKKKKKKKKKKKKKKKKKKKKTKKFL 175
+K + + K+ K K+ L
Sbjct: 120 VTLAEKLANRYSHDSYRNKQNKIKQSL 146
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_C
Length = 389
Score = 27.1 bits (59), Expect = 4.7
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 99 PRGRLVFLEKLLPLLSNQSEDCLYLNLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKK 158
PRG LS Y N + A K K + + KK+ + + +K
Sbjct: 96 PRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAFT--KYALKYDSDAGKKEIQLQLEKM 153
Query: 159 KKKKKKKKKKKKTKKFLPPSDPSGKA 184
KK + T+ KA
Sbjct: 154 KKYATIVRVIAHTQIRKMKGLKQKKA 179
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 26.6 bits (58), Expect = 4.7
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 141 KKNKNKNKKKKKKKKKKKKKKKKKKKKKK 169
++ + K K+ + KKK ++ K
Sbjct: 149 PQSYDSINPDLIKDKRSPEGKKKYRQGMK 177
Score = 25.8 bits (56), Expect = 8.5
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 143 NKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKF 174
++ + K K+ + KKK ++ F
Sbjct: 149 PQSYDSINPDLIKDKRSPEGKKKYRQGMKTIF 180
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 27.1 bits (59), Expect = 4.9
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGK 183
K + +KKK ++ + +K + P +P K
Sbjct: 292 KAVQRESGNRKKKNERLQALLGDNEKMNLSDVELIPLPLEPQVK 335
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase,
metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Length = 188
Score = 26.3 bits (59), Expect = 5.1
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 151 KKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGK 183
K+++ ++K +K + K + + + +
Sbjct: 150 KQQRIRQKVEKLDRLKARAPNSSSVDKLAAALE 182
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural genomics;
NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 25.4 bits (55), Expect = 5.1
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 152 KKKKKKKKKKKKKKKKKKKTKKF 174
+K KKK +F
Sbjct: 2 SSGSSGRKPPPKKKMTGTLETQF 24
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_W
Length = 130
Score = 26.1 bits (57), Expect = 5.2
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 154 KKKKKKKKKKKKKKKKKTKKF 174
+ K KKK + F
Sbjct: 3 RGVAVAAKGGAGGKKKGSVSF 23
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 26.7 bits (58), Expect = 5.4
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKK 162
EK +++ NK K+ +K K+ + +
Sbjct: 14 NEEKAQREANKKIEKQLQKDKQVYRATHR 42
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell
WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus
aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Length = 263
Score = 26.6 bits (59), Expect = 5.8
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
+ + + + + K KKKK K
Sbjct: 3 SSHHHHHHSSGLVPRGSHMQPVGKPPKKKKSK 34
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 26.9 bits (59), Expect = 5.9
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDP-SGKAG 185
+ + + + K +K + K K KK + P P GK
Sbjct: 15 PRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTH 65
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 26.4 bits (57), Expect = 5.9
Identities = 5/35 (14%), Positives = 17/35 (48%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
+ +K K + K+ ++++ + + + K+ K
Sbjct: 138 DVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATK 172
Score = 26.4 bits (57), Expect = 6.2
Identities = 5/42 (11%), Positives = 17/42 (40%)
Query: 150 KKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
+ +K+K ++ K+ ++++ + P + K
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEAD 176
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS
finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2
b.113.1.1 g.39.1.8
Length = 364
Score = 26.5 bits (58), Expect = 6.5
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSG 182
+E K + K+ K+K ++ + +K K +P +P G
Sbjct: 311 VEDALPPSKAPSRTRRAKRDLPKRKGRQAASGHCRPRKVKADIPSLEPEG 360
>2iub_A CORA, divalent cation transport-related protein; membrane protein,
ION transporter; 2.9A {Thermotoga maritima} SCOP:
d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Length = 363
Score = 26.6 bits (59), Expect = 6.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 153 KKKKKKKKKKKKKKKKKKTKKFLPP 177
K ++K+ KK LPP
Sbjct: 2 GSDKIHHHHHHMEEKRLSAKKGLPP 26
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 25.4 bits (55), Expect = 6.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 130 PVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKK 165
P GE + K K KK K+K+ KKKK+ +
Sbjct: 69 PEIYVGEVLYVDERKRKESPKKNKEKRMKKKKRLNR 104
Score = 25.4 bits (55), Expect = 7.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 146 KNKKKKKKKKKKKKKKKKKKKKKKK 170
+K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 25.0 bits (54), Expect = 9.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKK 168
+ +K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 25.0 bits (54), Expect = 9.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 149 KKKKKKKKKKKKKKKKKKKKKKTKK 173
++K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 26.5 bits (59), Expect = 6.8
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 143 NKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
K + K K K+ +++ +K++++ +KK
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKK 36
Score = 26.5 bits (59), Expect = 7.0
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 145 NKNKKKKKKKKKKKKKKKKKKKKKKKTKKFL 175
K ++K K K+ +++ +K++++ + K L
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKKGLL 39
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 26.2 bits (58), Expect = 6.9
Identities = 2/19 (10%), Positives = 10/19 (52%)
Query: 147 NKKKKKKKKKKKKKKKKKK 165
++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 26.2 bits (58), Expect = 7.5
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 148 KKKKKKKKKKKKKKKKKKK 166
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 26.2 bits (58), Expect = 7.5
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 149 KKKKKKKKKKKKKKKKKKK 167
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 26.2 bits (58), Expect = 7.5
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 150 KKKKKKKKKKKKKKKKKKK 168
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 26.2 bits (58), Expect = 7.5
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 151 KKKKKKKKKKKKKKKKKKK 169
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
Score = 26.2 bits (58), Expect = 7.5
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 152 KKKKKKKKKKKKKKKKKKK 170
+ ++K+ +++K ++
Sbjct: 180 QPPRRKEVPRRRKNHRRSG 198
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 26.3 bits (57), Expect = 7.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 134 EGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
G KK + +K +KKK KK +K +K+ + KK
Sbjct: 399 AGAATVKKPSPSKARKKKLNKKGRKMAGRKRGRPKKMN 436
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 26.2 bits (58), Expect = 7.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 150 KKKKKKKKKKKKKKKKKKKKKTKKF 174
+ + K K+K K +K K+K K
Sbjct: 344 QAELLKVKQKIKAQKDKEKAAYAKM 368
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 26.0 bits (58), Expect = 7.5
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 149 KKKKKKKKKKKKKKKKKKKKKKTKK 173
+K + ++ + +K+K K
Sbjct: 234 QKVGLRAARRTGLVRGGQKEKMAMK 258
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 26.1 bits (57), Expect = 7.5
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
++E + + K +K+K+ K K K + K
Sbjct: 301 RRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 26.1 bits (57), Expect = 7.5
Identities = 12/44 (27%), Positives = 15/44 (34%)
Query: 124 NLYVPRPVALEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKK 167
N Y+ +E +E K K KK K KK K
Sbjct: 139 NPYLNSGCHVEIFAQEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 26.0 bits (58), Expect = 7.6
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 22 RVARTKYGPLRGILIQNPPVEAYLGVPYATP-PLGSLRYMPPVTPS 66
R ++G L G L+ + G P L S+ +PP TP+
Sbjct: 5 RFNEGRWGVLEGELVL--ETDGPGGNPTGRRYDLASVTLLPPATPT 48
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 26.2 bits (57), Expect = 8.3
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 150 KKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAGVKSREQ 191
K K K K +P D + AG K +
Sbjct: 11 KGADDDDKVPDPTSVDSVKYSKIKGIPKLDDANDAGGKHSLE 52
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_B 2zkr_a
Length = 261
Score = 26.1 bits (58), Expect = 8.3
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 144 KNKNKKKKKKKKKKKKKKKKKKKKKKKT 171
K ++ + + + K K T
Sbjct: 234 KVGLIAARRTGRLRGQAAATAAKADKAT 261
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 26.0 bits (57), Expect = 8.4
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 151 KKKKKKKKKKKKKKKKKKKKTKKFLPP 177
K ++ K K+K+ + FL
Sbjct: 48 KAFAAREIKSLASKRKEDLQKITFLSR 74
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 26.1 bits (56), Expect = 8.4
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 134 EGEKKEKKKNKNKNKKKKKK-------KKKKKKKKKKKKKKKKKTKKFLPP 177
K+ K KNK +K+K K K + + K ++ + K +P
Sbjct: 18 SDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIPK 68
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 26.3 bits (58), Expect = 8.7
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 138 KEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSD 179
K K + +K+ K K +K +++K+ L PSD
Sbjct: 138 KTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPSD 179
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 25.8 bits (57), Expect = 8.8
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 153 KKKKKKKKKKKKKKKKKKTKKFL 175
+ + + K+KK K K
Sbjct: 2 TETRTETKQKKPSTFTKVMKIAS 24
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 26.2 bits (58), Expect = 9.0
Identities = 3/41 (7%), Positives = 14/41 (34%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKK 173
L E++++ + + K + + + + +
Sbjct: 280 LAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGR 320
Score = 25.8 bits (57), Expect = 9.6
Identities = 2/48 (4%), Positives = 14/48 (29%), Gaps = 9/48 (18%)
Query: 137 KKEKKKNKNKNKKKKKKKKKKKKKKKKK---------KKKKKKTKKFL 175
++ + + + +++++ K + + L
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALL 312
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 26.0 bits (57), Expect = 9.0
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
E K K N K + + K + K
Sbjct: 405 EPKGFKKVNPSDYDYTKHDEDSSETSKDNEDK 436
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 25.4 bits (55), Expect = 9.3
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 133 LEGEKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKK 170
L E KE K + K + K+K + + KKK
Sbjct: 92 LATEDKEALKKQLPGVKSEGKRKGDEVDGVDEVAKKKS 129
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 25.7 bits (56), Expect = 9.5
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 136 EKKEKKKNKNKNKKKKKKKKKKKKKKKKKKKKK 168
++ E + + K K + K++K+++K +K K+
Sbjct: 137 KELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 26.0 bits (56), Expect = 9.6
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 140 KKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLPPSDPSGKAG 185
+ K K + K+ +++ + P DPS
Sbjct: 593 DFVKVSSQKTTKPQTKEMMHMCMRQETYMEALSHLQSPLDPSTLLE 638
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 25.9 bits (57), Expect = 9.9
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 139 EKKKNKNKNKKKKKKKKKKKKKKKKKKKKKKKTKKFLP 176
K+K + + K K K + + P
Sbjct: 250 NKRKTEWTEQSIKYNNDKINYTDIKTLSPSEYLIEKCP 287
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.399
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,858,436
Number of extensions: 168121
Number of successful extensions: 5881
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3701
Number of HSP's successfully gapped: 961
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)