BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7149
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D93|A Chain A, Solution Structure Of The Cnmp_binding Domain Of Human Rap
Guanine Nucleotide Exchange Factor 6
Length = 134
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 87/112 (77%)
Query: 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVE 112
IEQLL+F L AF NMT++VR+ LC VM+F VVE+AG I++ DG+ELDSW V++NG VE
Sbjct: 11 IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVE 70
Query: 113 VELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRI 164
+ DG+ + L +G+SFGI PT++K Y G++RT+ DDCQFVCI Q DY+RI
Sbjct: 71 ISHPDGKVENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRI 122
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 37 VRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMND 96
+R L K P +RT DD+E + D H+KA ++++ V++ L GV++F K GT++ N
Sbjct: 11 MRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ 70
Query: 97 GEELDSWSVVINGCVEVEL-SDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVC 155
GEE SW +++ G V V + G L GD FG L + + R D+C F+
Sbjct: 71 GEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLR 130
Query: 156 ITQTDYYRI 164
+ + D+ RI
Sbjct: 131 VDKEDFNRI 139
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 37 VRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMND 96
+R L K P +RT DD+E + D H+KA ++++ V++ L GV++F K GT++ N
Sbjct: 316 MRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ 375
Query: 97 GEELDSWSVVINGCVEVEL-SDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVC 155
GEE SW +++ G V V + G L GD FG L + + R D+C F+
Sbjct: 376 GEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLR 435
Query: 156 ITQTDYYRI 164
+ + D+ RI
Sbjct: 436 VDKEDFNRI 444
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 40 CLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEE 99
CL+K P ER+ +D++ + + +KAF + + +C + +EK G + G+
Sbjct: 24 CLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEK-GITLFRQGDI 82
Query: 100 LDSWSVVINGCVEVELSDGRSQM-------LQVGDSFG 130
+W V+ G ++V++S+ S L +G +FG
Sbjct: 83 GTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFG 120
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 37 VRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMND 96
+R L K P +RT DD+E + D H+KA ++++ V++ L GV++F K GT++ N
Sbjct: 316 MRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ 375
Query: 97 GEELDSWSVVINGCVEVEL-SDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVC 155
GEE SW +++ G V V + G L GD FG L + + R D+C F+
Sbjct: 376 GEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLR 435
Query: 156 ITQTDYYRI 164
+ + D+ RI
Sbjct: 436 VDKEDFNRI 444
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 40 CLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEE 99
CL+K P ER+ +D++ + + +KAF + + +C + +EK G + G+
Sbjct: 24 CLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEK-GITLFRQGDI 82
Query: 100 LDSWSVVINGCVEVELSDGRSQM-------LQVGDSFG 130
+W V+ G ++V++S+ S L +G +FG
Sbjct: 83 GTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFG 120
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 37 VRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMND 96
+R L K P +RT DD+E + D H+KA ++++ V++ L GV++F K GT++ N
Sbjct: 316 MRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ 375
Query: 97 GEELDSWSVVINGCVEVEL-SDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVC 155
GEE SW +++ G V V + G L GD FG L + + R D+C F+
Sbjct: 376 GEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLR 435
Query: 156 ITQTDYYRI 164
+ + D RI
Sbjct: 436 VDKEDGNRI 444
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 40 CLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEE 99
CL+K P ER+ +D++ + + +KAF + + +C + +EK G + G+
Sbjct: 24 CLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEK-GITLFRQGDI 82
Query: 100 LDSWSVVINGCVEVELSDGRSQM-------LQVGDSFG 130
+W V+ G ++V++S+ S L +G +FG
Sbjct: 83 GTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFG 120
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 59 FTQHLKAFTNMTLAVRKALCGVMVFAVVEKA-GTIVMNDGEELDSWSVVINGCVEVELSD 117
F +H AF + +AL M F V A G ++ + GE +DS V++G +EV D
Sbjct: 29 FKEH-PAFRLASDGCLRAL--AMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDD 85
Query: 118 GRSQMLQVGDSFG 130
+L GD FG
Sbjct: 86 EVVAILGKGDVFG 98
>pdb|1VKW|A Chain A, Crystal Structure Of A Putative Nitroreductase (tm1586)
From Thermotoga Maritima Msb8 At 2.00 A Resolution
Length = 218
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 26 SLFQSLIVKDRVRECLEKDPSERTDDDIEQL--------LDFTQHLKAFTNMTLA 72
++F+++ + VR+ LE+ ER DDIE L LD+ +L +F + A
Sbjct: 14 NIFEAIENRHSVRDFLERKXPERVKDDIENLLVKFITKKLDWKINLSSFPSYIYA 68
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 82 VFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHE 141
+F V AG V+ G E D++ VV G V+V ++ + G SFG L +
Sbjct: 153 MFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRA 212
Query: 142 GVMRTRCDDCQFVCITQTDYYRI 164
++ + D + I + Y RI
Sbjct: 213 ATVKAKT-DLKLWGIDRDSYRRI 234
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 28.1 bits (61), Expect = 2.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 103 WSVVINGCVEVELSDGRSQMLQVG 126
W VV NG V VEL D Q++ G
Sbjct: 206 WQVVANGDVSVELRDADQQVVATG 229
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 28.1 bits (61), Expect = 2.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 103 WSVVINGCVEVELSDGRSQMLQVG 126
W VV NG V VEL D Q++ G
Sbjct: 206 WQVVANGDVSVELRDADQQVVATG 229
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 28.1 bits (61), Expect = 2.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 103 WSVVINGCVEVELSDGRSQMLQVG 126
W VV NG V VEL D Q++ G
Sbjct: 206 WQVVANGDVSVELRDADQQVVATG 229
>pdb|3Q98|A Chain A, Structure Of Ygew Encoded Protein From E. Coli
Length = 399
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 47 ERTDDDIEQLLDFTQHLKAF--TNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWS 104
E+T D+++Q+LD LKA N++ V + G+ VF N S++
Sbjct: 32 EQTPDELKQVLDVAAALKALRAENISTKVFNSGLGISVFR---------DNSTRTRFSYA 82
Query: 105 VVIN--GCVEVELSDGRSQM 122
+N G + +L +G+SQ+
Sbjct: 83 SALNLLGLAQQDLDEGKSQI 102
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 82 VFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHE 141
+F V AG V+ G+E D++ V+ G ++V +++ + + G SFG L +
Sbjct: 58 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRA 117
Query: 142 GVMRTRCDDCQFVCITQTDYYRI 164
++ + + + I + Y RI
Sbjct: 118 ATVKAKT-NVKLWGIDRDSYRRI 139
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 82 VFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHE 141
+F V AG V+ G+E D++ V+ G ++V +++ + + G SFG L +
Sbjct: 62 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRA 121
Query: 142 GVMRTRCDDCQFVCITQTDYYRI 164
++ + + + I + Y RI
Sbjct: 122 ATVKAKT-NVKLWGIDRDSYRRI 143
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 82 VFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHE 141
+F V AG V+ G+E D++ V+ G ++V +++ + + G SFG L +
Sbjct: 68 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRA 127
Query: 142 GVMRTRCDDCQFVCITQTDYYRI 164
++ + + + I + Y RI
Sbjct: 128 ATVKAKT-NVKLWGIDRDSYRRI 149
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 82 VFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHE 141
+F V AG V+ G+E D++ V+ G ++V +++ + + G SFG L +
Sbjct: 60 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRA 119
Query: 142 GVMRTRCDDCQFVCITQTDYYRI 164
++ + + + I + Y RI
Sbjct: 120 ATVKAKT-NVKLWGIDRDSYRRI 141
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 82 VFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHE 141
+F V AG V+ G+E D++ V+ G ++V +++ + + G SFG L +
Sbjct: 61 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRA 120
Query: 142 GVMRTRCDDCQFVCITQTDYYRI 164
++ + + + I + Y RI
Sbjct: 121 ATVKAKT-NVKLWGIDRDSYRRI 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,701,656
Number of Sequences: 62578
Number of extensions: 170035
Number of successful extensions: 516
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 22
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)