Query psy7149
Match_columns 167
No_of_seqs 240 out of 1577
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 19:27:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ocp_A PRKG1 protein; serine/t 99.9 8E-25 2.7E-29 154.3 15.2 125 41-167 6-130 (139)
2 2d93_A RAP guanine nucleotide 99.9 2.1E-25 7.1E-30 156.5 11.8 123 44-167 2-125 (134)
3 3pna_A CAMP-dependent protein 99.9 1.3E-23 4.5E-28 150.7 14.4 124 41-166 21-144 (154)
4 3idb_B CAMP-dependent protein 99.9 2.6E-23 8.8E-28 150.1 15.6 122 43-166 23-148 (161)
5 3shr_A CGMP-dependent protein 99.9 3.5E-23 1.2E-27 163.0 16.3 124 41-166 22-145 (299)
6 4f7z_A RAP guanine nucleotide 99.9 3.5E-23 1.2E-27 186.8 16.9 131 35-166 314-446 (999)
7 4f8a_A Potassium voltage-gated 99.9 1.5E-22 5.2E-27 145.1 14.4 118 47-166 16-135 (160)
8 4f7z_A RAP guanine nucleotide 99.9 1.1E-22 3.6E-27 183.7 16.6 127 37-166 21-154 (999)
9 2qcs_B CAMP-dependent protein 99.9 2.2E-22 7.6E-27 157.6 16.0 126 39-166 20-145 (291)
10 1o7f_A CAMP-dependent RAP1 gua 99.9 3.3E-22 1.1E-26 166.5 17.3 131 34-166 313-446 (469)
11 1vp6_A CNBD, cyclic-nucleotide 99.9 3.3E-22 1.1E-26 140.2 11.8 112 51-166 4-115 (138)
12 3of1_A CAMP-dependent protein 99.9 2.2E-22 7.5E-27 153.4 11.2 111 54-166 3-113 (246)
13 3mdp_A Cyclic nucleotide-bindi 99.9 4.1E-22 1.4E-26 140.0 11.7 107 58-166 6-120 (142)
14 4din_B CAMP-dependent protein 99.9 3.6E-22 1.2E-26 163.3 11.5 124 41-166 113-236 (381)
15 1o7f_A CAMP-dependent RAP1 gua 99.9 2.6E-21 8.9E-26 161.0 16.6 125 39-166 23-154 (469)
16 3tnp_B CAMP-dependent protein 99.9 2.2E-21 7.5E-26 160.5 15.7 122 43-166 130-255 (416)
17 3bpz_A Potassium/sodium hyperp 99.9 3.4E-22 1.2E-26 149.5 9.9 109 56-166 70-178 (202)
18 3ukn_A Novel protein similar t 99.9 3.5E-22 1.2E-26 150.3 9.7 106 59-166 76-183 (212)
19 2z69_A DNR protein; beta barre 99.9 3.2E-21 1.1E-25 137.2 14.2 114 52-167 6-125 (154)
20 2ptm_A Hyperpolarization-activ 99.9 5.6E-22 1.9E-26 147.8 10.1 110 55-166 68-178 (198)
21 3gyd_A CNMP-BD protein, cyclic 99.9 8.5E-22 2.9E-26 146.0 10.6 114 51-166 32-150 (187)
22 3of1_A CAMP-dependent protein 99.9 2.5E-21 8.5E-26 147.6 12.7 127 34-166 105-232 (246)
23 3cf6_E RAP guanine nucleotide 99.9 2.3E-21 7.9E-26 169.3 14.0 135 31-167 5-142 (694)
24 2pqq_A Putative transcriptiona 99.9 3.1E-21 1.1E-25 136.4 10.3 108 57-166 4-116 (149)
25 3shr_A CGMP-dependent protein 99.8 2.6E-20 8.8E-25 146.6 14.2 128 34-167 137-270 (299)
26 3fx3_A Cyclic nucleotide-bindi 99.8 3E-20 1E-24 141.4 12.0 111 54-166 7-122 (237)
27 4ev0_A Transcription regulator 99.8 2.8E-20 9.5E-25 139.5 11.2 105 60-166 1-110 (216)
28 3d0s_A Transcriptional regulat 99.8 1.4E-20 4.9E-25 142.3 9.5 109 56-166 4-117 (227)
29 4ava_A Lysine acetyltransferas 99.8 4.3E-20 1.5E-24 147.4 12.5 107 57-165 12-122 (333)
30 3e97_A Transcriptional regulat 99.8 3.3E-20 1.1E-24 140.7 11.0 109 56-166 4-117 (231)
31 1zyb_A Transcription regulator 99.8 9.5E-20 3.3E-24 138.7 13.6 112 53-166 13-132 (232)
32 1wgp_A Probable cyclic nucleot 99.8 1.3E-20 4.5E-25 131.9 7.8 107 58-166 6-127 (137)
33 3dn7_A Cyclic nucleotide bindi 99.8 4.7E-20 1.6E-24 136.4 11.1 107 58-166 7-119 (194)
34 3dkw_A DNR protein; CRP-FNR, H 99.8 3.9E-20 1.3E-24 139.7 10.1 111 55-167 6-122 (227)
35 3iwz_A CAP-like, catabolite ac 99.8 1.3E-19 4.5E-24 137.0 13.0 111 55-167 8-124 (230)
36 2qcs_B CAMP-dependent protein 99.8 3.3E-19 1.1E-23 139.4 15.4 128 34-167 137-270 (291)
37 3dv8_A Transcriptional regulat 99.8 9.7E-20 3.3E-24 136.8 11.8 108 57-166 2-116 (220)
38 4din_B CAMP-dependent protein 99.8 5.2E-20 1.8E-24 150.5 7.3 128 34-167 228-361 (381)
39 3tnp_B CAMP-dependent protein 99.8 1.1E-19 3.9E-24 150.2 8.6 128 34-167 247-385 (416)
40 2gau_A Transcriptional regulat 99.8 3E-19 1E-23 135.5 10.3 103 62-166 14-121 (232)
41 3ryp_A Catabolite gene activat 99.8 3.6E-18 1.2E-22 127.3 11.8 101 64-166 2-108 (210)
42 2oz6_A Virulence factor regula 99.7 1.4E-17 4.9E-22 123.8 12.3 96 69-166 1-105 (207)
43 3kcc_A Catabolite gene activat 99.7 2.2E-17 7.6E-22 127.9 11.7 105 60-166 48-158 (260)
44 2fmy_A COOA, carbon monoxide o 99.7 6.9E-18 2.4E-22 127.1 8.4 100 58-166 4-107 (220)
45 1o5l_A Transcriptional regulat 99.7 1.1E-17 3.7E-22 125.8 8.1 103 62-166 3-111 (213)
46 1ft9_A Carbon monoxide oxidati 99.7 1.2E-17 4.1E-22 126.0 7.6 99 59-166 1-103 (222)
47 3e6c_C CPRK, cyclic nucleotide 99.7 7.9E-17 2.7E-21 123.7 8.8 102 60-166 11-117 (250)
48 3beh_A MLL3241 protein; transm 99.7 3.8E-18 1.3E-22 138.0 -0.4 108 56-167 226-333 (355)
49 2bgc_A PRFA; bacterial infecti 99.6 2.1E-15 7E-20 115.0 11.5 97 67-166 2-108 (238)
50 3la7_A Global nitrogen regulat 99.6 2.7E-15 9.1E-20 114.9 11.8 95 71-167 30-134 (243)
51 3b02_A Transcriptional regulat 99.6 1.2E-14 4.1E-19 107.5 8.7 76 84-162 2-82 (195)
52 2zcw_A TTHA1359, transcription 99.4 1.3E-13 4.4E-18 102.3 5.4 80 78-161 2-88 (202)
53 3rns_A Cupin 2 conserved barre 94.8 0.3 1E-05 36.3 10.0 67 82-156 40-106 (227)
54 3h8u_A Uncharacterized conserv 94.4 0.29 9.9E-06 32.4 8.2 68 84-156 44-112 (125)
55 3es1_A Cupin 2, conserved barr 94.2 0.13 4.5E-06 37.1 6.4 68 83-156 83-150 (172)
56 3fjs_A Uncharacterized protein 93.8 0.83 2.8E-05 29.9 9.5 64 84-155 41-104 (114)
57 2fqp_A Hypothetical protein BP 93.8 0.15 5.3E-06 32.4 5.6 66 88-157 26-93 (97)
58 2ozj_A Cupin 2, conserved barr 93.3 0.72 2.5E-05 29.9 8.5 62 88-156 46-107 (114)
59 2f4p_A Hypothetical protein TM 93.0 0.84 2.9E-05 31.4 8.8 68 84-156 53-120 (147)
60 3lwc_A Uncharacterized protein 92.9 0.49 1.7E-05 31.6 7.2 65 84-156 45-109 (119)
61 1o5u_A Novel thermotoga mariti 92.5 0.63 2.1E-05 30.2 7.1 44 83-129 35-78 (101)
62 3ibm_A Cupin 2, conserved barr 91.9 1.5 5E-05 31.0 9.1 67 84-156 61-128 (167)
63 2bnm_A Epoxidase; oxidoreducta 91.9 0.64 2.2E-05 33.4 7.3 55 98-156 138-196 (198)
64 2b8m_A Hypothetical protein MJ 91.8 0.76 2.6E-05 29.9 7.0 65 88-156 35-99 (117)
65 2gu9_A Tetracenomycin polyketi 91.4 1.5 5.3E-05 27.8 8.1 67 84-156 26-95 (113)
66 3d0j_A Uncharacterized protein 91.3 0.86 2.9E-05 31.6 6.9 59 94-158 44-109 (140)
67 3rns_A Cupin 2 conserved barre 91.2 1.8 6.1E-05 32.0 9.3 66 83-156 157-223 (227)
68 1v70_A Probable antibiotics sy 91.2 1.7 5.9E-05 27.0 8.7 67 84-156 33-100 (105)
69 1yhf_A Hypothetical protein SP 90.5 2.3 7.9E-05 27.3 10.0 65 84-156 45-109 (115)
70 2vpv_A Protein MIF2, MIF2P; nu 90.2 1.1 3.9E-05 31.9 7.0 54 98-156 108-161 (166)
71 2pfw_A Cupin 2, conserved barr 90.2 2.5 8.5E-05 27.1 9.9 66 83-156 38-103 (116)
72 3kgz_A Cupin 2 conserved barre 90.1 1.4 4.9E-05 30.8 7.4 64 88-156 52-115 (156)
73 1sfn_A Conserved hypothetical 90.1 2.5 8.6E-05 31.7 9.3 70 81-156 167-237 (246)
74 3jzv_A Uncharacterized protein 89.8 1.2 4.1E-05 31.5 6.9 64 88-156 61-124 (166)
75 1vj2_A Novel manganese-contain 89.6 1.9 6.7E-05 28.5 7.6 64 88-156 56-119 (126)
76 3bcw_A Uncharacterized protein 89.6 0.65 2.2E-05 31.3 5.1 53 88-144 57-109 (123)
77 2opk_A Hypothetical protein; p 89.5 2.2 7.7E-05 27.7 7.7 44 98-144 51-95 (112)
78 4e2g_A Cupin 2 conserved barre 89.5 1.1 3.8E-05 29.4 6.3 74 84-165 46-123 (126)
79 4b29_A Dimethylsulfoniopropion 89.1 0.97 3.3E-05 33.7 6.1 42 88-129 140-181 (217)
80 3es4_A Uncharacterized protein 89.1 0.4 1.4E-05 32.3 3.6 45 88-133 50-94 (116)
81 3h7j_A Bacilysin biosynthesis 88.8 3.4 0.00012 30.8 9.2 72 81-157 36-107 (243)
82 2pyt_A Ethanolamine utilizatio 88.6 0.99 3.4E-05 30.8 5.5 43 84-130 62-104 (133)
83 3l2h_A Putative sugar phosphat 88.6 1.3 4.6E-05 30.6 6.4 44 84-129 51-96 (162)
84 3i7d_A Sugar phosphate isomera 88.4 1.5 5.3E-05 30.7 6.6 45 84-130 48-94 (163)
85 4axo_A EUTQ, ethanolamine util 88.4 2.6 9E-05 29.5 7.7 51 99-156 83-133 (151)
86 3h7j_A Bacilysin biosynthesis 88.2 2.4 8.4E-05 31.6 8.0 67 84-156 150-217 (243)
87 2i45_A Hypothetical protein; n 87.9 0.86 2.9E-05 29.2 4.7 68 88-161 36-103 (107)
88 1o4t_A Putative oxalate decarb 87.8 3.5 0.00012 27.6 7.9 67 84-156 62-129 (133)
89 2oa2_A BH2720 protein; 1017534 87.8 4.2 0.00014 27.7 8.5 67 85-156 49-121 (148)
90 3cew_A Uncharacterized cupin p 86.9 3.2 0.00011 27.1 7.2 64 88-156 34-99 (125)
91 2q30_A Uncharacterized protein 86.5 4.4 0.00015 25.5 8.9 65 85-156 39-105 (110)
92 1lr5_A Auxin binding protein 1 86.2 2.3 7.9E-05 29.4 6.5 66 85-156 47-122 (163)
93 4i4a_A Similar to unknown prot 86.1 5.3 0.00018 26.0 8.6 76 84-165 39-116 (128)
94 1y9q_A Transcriptional regulat 85.8 5.4 0.00019 28.2 8.5 40 100-143 126-165 (192)
95 2d40_A Z3393, putative gentisa 85.8 2.7 9.2E-05 33.4 7.4 74 83-161 104-177 (354)
96 1zvf_A 3-hydroxyanthranilate 3 85.7 1.9 6.4E-05 31.1 5.7 59 92-158 47-113 (176)
97 3bu7_A Gentisate 1,2-dioxygena 85.5 3.5 0.00012 33.5 7.9 77 83-165 298-375 (394)
98 2o1q_A Putative acetyl/propion 84.8 2.7 9.1E-05 28.9 6.1 69 81-156 46-116 (145)
99 4e2q_A Ureidoglycine aminohydr 84.7 3.1 0.00011 31.9 7.0 68 84-158 75-142 (266)
100 1j58_A YVRK protein; cupin, de 84.3 6.6 0.00023 31.1 9.1 65 88-156 265-334 (385)
101 2q1z_B Anti-sigma factor CHRR, 84.2 3 0.0001 30.2 6.5 66 81-156 127-192 (195)
102 1yfu_A 3-hydroxyanthranilate-3 83.8 4.2 0.00014 29.2 6.8 59 92-158 48-111 (174)
103 1juh_A Quercetin 2,3-dioxygena 83.2 4.7 0.00016 31.9 7.7 69 90-164 262-333 (350)
104 1sfn_A Conserved hypothetical 82.9 8.7 0.0003 28.6 8.8 64 84-157 55-118 (246)
105 1dgw_A Canavalin; duplicated s 82.7 2.1 7.1E-05 30.5 5.0 46 84-130 46-94 (178)
106 3ht1_A REMF protein; cupin fol 82.6 3.6 0.00012 27.4 6.0 64 88-156 47-112 (145)
107 1fi2_A Oxalate oxidase, germin 82.4 11 0.00039 27.0 9.7 47 83-130 76-130 (201)
108 2qjv_A Uncharacterized IOLB-li 82.3 7.8 0.00027 29.8 8.3 75 81-157 31-109 (270)
109 1rc6_A Hypothetical protein YL 82.3 4.7 0.00016 30.3 7.1 68 84-157 64-133 (261)
110 2vqa_A SLL1358 protein, MNCA; 82.3 7.6 0.00026 30.4 8.6 46 84-130 239-289 (361)
111 3d82_A Cupin 2, conserved barr 82.0 5.1 0.00017 24.8 6.2 52 100-158 50-101 (102)
112 2qnk_A 3-hydroxyanthranilate 3 81.8 3.5 0.00012 31.9 6.1 61 92-159 44-107 (286)
113 1sef_A Conserved hypothetical 81.7 12 0.0004 28.3 9.2 67 84-156 187-255 (274)
114 1sq4_A GLXB, glyoxylate-induce 80.9 4 0.00014 31.2 6.3 65 88-157 76-142 (278)
115 2o8q_A Hypothetical protein; c 80.4 3.2 0.00011 27.5 5.1 50 100-154 64-113 (134)
116 1x82_A Glucose-6-phosphate iso 79.7 6.8 0.00023 28.0 6.9 52 101-156 97-152 (190)
117 3bu7_A Gentisate 1,2-dioxygena 79.6 1.6 5.5E-05 35.5 3.8 47 82-129 126-172 (394)
118 2vqa_A SLL1358 protein, MNCA; 79.1 13 0.00045 29.0 9.0 68 84-156 57-129 (361)
119 3myx_A Uncharacterized protein 77.7 3.4 0.00012 31.2 4.9 32 100-131 186-217 (238)
120 2d40_A Z3393, putative gentisa 77.7 13 0.00044 29.4 8.5 68 88-162 276-343 (354)
121 3nw4_A Gentisate 1,2-dioxygena 77.1 12 0.0004 30.1 8.1 70 83-157 107-176 (368)
122 1sef_A Conserved hypothetical 76.7 5.6 0.00019 30.1 6.0 68 84-157 67-136 (274)
123 1rc6_A Hypothetical protein YL 74.8 11 0.00037 28.2 7.1 69 82-156 182-252 (261)
124 3nw4_A Gentisate 1,2-dioxygena 73.1 19 0.00065 28.8 8.4 71 88-165 287-357 (368)
125 1sq4_A GLXB, glyoxylate-induce 72.8 9.1 0.00031 29.2 6.3 47 81-129 193-240 (278)
126 2cav_A Protein (canavalin); vi 71.0 17 0.00057 29.9 7.8 46 84-130 91-139 (445)
127 1y3t_A Hypothetical protein YX 70.8 11 0.00036 29.0 6.4 63 88-156 54-117 (337)
128 1uij_A Beta subunit of beta co 68.7 6 0.0002 32.2 4.6 46 83-129 53-101 (416)
129 2qnk_A 3-hydroxyanthranilate 3 68.5 37 0.0013 26.2 8.7 67 83-158 211-277 (286)
130 3myx_A Uncharacterized protein 66.8 8.9 0.00031 28.8 4.9 32 98-130 63-94 (238)
131 1j58_A YVRK protein; cupin, de 65.9 14 0.00048 29.2 6.2 45 84-129 84-132 (385)
132 1y3t_A Hypothetical protein YX 65.1 14 0.00047 28.4 5.9 51 100-156 239-289 (337)
133 2ea7_A 7S globulin-1; beta bar 63.1 10 0.00035 31.1 5.0 47 83-130 65-114 (434)
134 3lag_A Uncharacterized protein 63.1 2.5 8.7E-05 26.9 1.1 65 88-156 25-92 (98)
135 3ebr_A Uncharacterized RMLC-li 62.9 7.9 0.00027 27.1 3.8 67 80-156 43-113 (159)
136 2ozi_A Hypothetical protein RP 62.1 11 0.00036 24.0 4.0 66 88-157 25-93 (98)
137 2d5f_A Glycinin A3B4 subunit; 62.0 64 0.0022 26.8 9.7 71 81-156 47-146 (493)
138 1juh_A Quercetin 2,3-dioxygena 60.0 19 0.00065 28.3 5.9 34 96-129 67-104 (350)
139 2xp1_A SPT6; transcription, IW 60.0 14 0.00046 26.5 4.6 41 60-107 11-51 (178)
140 2phl_A Phaseolin; plant SEED s 58.9 33 0.0011 27.7 7.2 45 83-128 56-103 (397)
141 2e9q_A 11S globulin subunit be 57.4 69 0.0024 26.3 9.0 50 81-131 65-139 (459)
142 3p0u_A Nuclear receptor subfam 55.5 37 0.0013 25.1 6.6 67 10-82 1-76 (249)
143 1fxz_A Glycinin G1; proglycini 54.6 71 0.0024 26.4 8.7 49 81-130 50-124 (476)
144 4e2q_A Ureidoglycine aminohydr 54.0 70 0.0024 24.3 8.9 66 81-152 188-254 (266)
145 2d5f_A Glycinin A3B4 subunit; 52.5 46 0.0016 27.7 7.2 54 75-129 363-422 (493)
146 3s7i_A Allergen ARA H 1, clone 52.2 21 0.00073 29.0 5.1 43 88-130 52-97 (418)
147 3o14_A Anti-ecfsigma factor, C 51.6 40 0.0014 24.8 6.1 64 81-156 45-108 (223)
148 3c3v_A Arachin ARAH3 isoform; 51.1 45 0.0015 27.9 6.9 54 75-129 368-427 (510)
149 3fz3_A Prunin; TREE NUT allerg 50.8 57 0.002 27.5 7.5 55 74-129 389-449 (531)
150 1fxz_A Glycinin G1; proglycini 48.5 40 0.0014 27.9 6.3 47 82-129 341-393 (476)
151 3cjx_A Protein of unknown func 48.5 30 0.001 24.3 4.8 48 81-131 45-92 (165)
152 2e9q_A 11S globulin subunit be 48.0 72 0.0024 26.3 7.7 55 74-129 317-377 (459)
153 2y0o_A Probable D-lyxose ketol 47.3 59 0.002 23.1 6.2 51 88-142 61-139 (175)
154 2vec_A YHAK, pirin-like protei 46.5 91 0.0031 23.4 9.9 64 88-157 190-253 (256)
155 3cqv_A Nuclear receptor subfam 45.7 27 0.00092 24.8 4.3 30 52-81 32-61 (199)
156 3vi8_A Peroxisome proliferator 45.1 21 0.00073 27.0 3.9 31 51-81 87-117 (273)
157 4h7l_A Uncharacterized protein 42.9 15 0.00052 25.8 2.5 34 95-129 61-96 (157)
158 2arc_A ARAC, arabinose operon 41.2 39 0.0013 22.4 4.4 32 97-129 35-66 (164)
159 3gyt_A Nuclear hormone recepto 41.1 31 0.0011 25.7 4.1 29 53-81 54-82 (244)
160 3or8_A Transcription elongatio 41.0 44 0.0015 24.3 4.8 40 61-106 6-46 (197)
161 1k8k_G P16, ARP2/3 complex 16 40.6 63 0.0021 22.5 5.3 76 7-82 14-111 (151)
162 3n00_A REV-ERBA-alpha; reverba 39.9 30 0.001 25.6 3.9 31 52-82 77-107 (245)
163 2p1t_A Retinoic acid receptor 39.7 31 0.0011 25.1 4.0 29 53-81 54-82 (240)
164 1osh_A BIle acid receptor; nuc 38.4 38 0.0013 24.6 4.2 31 52-82 54-84 (232)
165 1l2j_A Estrogen receptor beta; 38.4 38 0.0013 25.5 4.3 30 53-82 72-101 (271)
166 3ltx_A Estrogen receptor; cons 38.0 38 0.0013 24.9 4.2 31 52-82 48-78 (243)
167 3k6p_A Steroid hormone recepto 37.8 38 0.0013 25.0 4.2 31 52-82 60-90 (248)
168 1pdu_A DHR38, nuclear hormone 37.5 39 0.0013 25.0 4.2 30 53-82 60-89 (244)
169 1pzl_A Hepatocyte nuclear fact 37.3 37 0.0013 24.6 4.0 28 54-81 55-82 (237)
170 3v3e_B Nuclear receptor subfam 37.2 29 0.00099 26.0 3.5 30 53-82 65-94 (257)
171 1fcy_A RAR-gamma-1, retinoic a 37.2 36 0.0012 24.8 4.0 30 52-81 56-85 (236)
172 2nxx_E Ecdysone receptor (ECR, 36.9 37 0.0013 25.1 4.0 29 53-81 65-93 (248)
173 3up3_A Acedaf-12; ligand bindi 36.8 29 0.001 25.7 3.4 29 53-81 54-82 (243)
174 3l0l_A Nuclear receptor ROR-ga 36.5 34 0.0011 25.3 3.7 30 52-81 68-97 (248)
175 3oll_A Estrogen receptor beta; 36.2 42 0.0015 24.5 4.2 32 51-82 44-75 (240)
176 3ksc_A LEGA class, prolegumin; 36.1 1.3E+02 0.0044 25.1 7.4 55 74-129 353-413 (496)
177 3kmr_A Retinoic acid receptor 35.9 42 0.0014 25.1 4.2 30 52-81 80-109 (266)
178 2e2r_A Estrogen-related recept 35.8 43 0.0015 24.6 4.2 30 53-82 61-90 (244)
179 1nq7_A Nuclear receptor ROR-be 35.7 35 0.0012 25.1 3.7 29 53-81 63-91 (244)
180 1mz4_A Cytochrome C550; PSII a 35.4 34 0.0012 22.5 3.3 22 62-83 100-121 (137)
181 1xpc_A Estrogen receptor; nucl 35.4 40 0.0014 24.8 3.9 31 52-82 47-77 (248)
182 2xlg_A SLL1785 protein, CUCA; 35.1 15 0.0005 27.6 1.4 30 100-129 64-112 (239)
183 2iz2_A FTZ-F1 alpha, nuclear h 34.5 40 0.0014 24.8 3.8 28 54-81 60-87 (243)
184 3plz_A FTZ-F1 related protein; 34.4 42 0.0014 25.0 3.9 28 54-81 70-97 (257)
185 3c3v_A Arachin ARAH3 isoform; 34.1 2.1E+02 0.007 23.9 9.0 30 84-114 53-82 (510)
186 1uij_A Beta subunit of beta co 34.0 1.3E+02 0.0045 24.2 7.1 78 73-157 243-339 (416)
187 2nxx_A Ultraspiracle (USP, NR2 34.0 39 0.0013 24.6 3.7 30 52-81 49-78 (235)
188 3cjw_A COUP transcription fact 33.9 41 0.0014 24.6 3.8 31 52-82 49-79 (244)
189 1yye_A ER-beta, estrogen recep 33.9 48 0.0016 24.8 4.2 31 52-82 43-73 (268)
190 1t7r_A Androgen receptor; nucl 33.8 43 0.0015 25.1 4.0 29 53-81 62-90 (269)
191 3f5c_B Nuclear receptor subfam 33.3 44 0.0015 25.2 3.9 29 55-83 62-90 (268)
192 1xvp_B Orphan nuclear receptor 33.0 43 0.0015 24.6 3.8 30 52-81 66-95 (246)
193 1g2n_A Ultraspiracle protein; 32.9 45 0.0016 24.8 3.9 30 52-81 54-83 (264)
194 3b0t_A Vitamin D3 receptor; nu 32.8 46 0.0016 24.5 3.9 29 53-81 69-97 (254)
195 3u9q_A Peroxisome proliferator 32.8 43 0.0015 25.2 3.8 29 53-81 86-114 (269)
196 3ilz_A Thyroid hormone recepto 32.5 41 0.0014 25.2 3.6 32 51-82 81-112 (267)
197 1ovl_A Orphan nuclear receptor 32.5 47 0.0016 24.8 4.0 29 54-82 88-116 (271)
198 3kgl_A Cruciferin; 11S SEED gl 32.2 1.3E+02 0.0046 24.8 6.9 55 74-129 318-378 (466)
199 1ymt_A Steroidogenic factor 1; 32.1 48 0.0016 24.3 3.9 30 53-82 58-87 (246)
200 3vhv_A Mineralocorticoid recep 32.1 53 0.0018 24.4 4.2 31 52-82 52-82 (260)
201 1n83_A Nuclear receptor ROR-al 32.0 44 0.0015 25.1 3.7 30 52-81 77-106 (270)
202 1hg4_A Ultraspiracle; nuclear 31.8 53 0.0018 24.5 4.2 31 52-82 59-89 (279)
203 1lbd_A RXR_LBD, retinoid X rec 31.7 48 0.0016 24.9 3.9 29 53-81 96-124 (282)
204 3mnp_A Glucocorticoid receptor 31.4 50 0.0017 24.6 4.0 30 53-82 55-84 (261)
205 2r40_D Ecdysone receptor, 20-h 31.3 45 0.0016 24.9 3.7 29 53-81 81-109 (266)
206 2d0s_A Cytochrome C, cytochrom 31.1 20 0.00068 21.0 1.4 20 63-82 57-76 (79)
207 1vr3_A Acireductone dioxygenas 30.8 1.5E+02 0.0051 21.3 7.4 30 100-129 104-137 (191)
208 3ipq_A Oxysterols receptor LXR 30.1 48 0.0016 25.0 3.7 30 53-82 101-130 (283)
209 1sqn_A PR, progesterone recept 30.1 49 0.0017 24.6 3.7 31 52-82 53-83 (261)
210 2o4j_A Vitamin D3 receptor; nu 29.7 54 0.0018 24.9 3.9 29 53-81 72-100 (292)
211 1xdk_B RAR-beta, retinoic acid 29.5 54 0.0019 25.0 3.9 29 53-81 84-112 (303)
212 3cu5_A Two component transcrip 29.5 12 0.0004 24.5 0.0 22 2-23 93-114 (141)
213 3qac_A 11S globulin SEED stora 29.2 2.2E+02 0.0075 23.5 7.7 54 75-129 319-378 (465)
214 4aw0_A HPDK1, 3-phosphoinositi 29.1 13 0.00045 28.8 0.3 39 33-72 261-300 (311)
215 2ocf_A Estrogen receptor; estr 28.7 58 0.002 24.9 3.9 30 53-82 57-86 (298)
216 1z5x_E Ecdysone receptor ligan 28.4 65 0.0022 24.8 4.2 29 53-81 129-157 (310)
217 1cch_A Cytochrome C551; electr 28.2 45 0.0015 19.3 2.7 19 63-82 61-79 (82)
218 2hc4_A Vitamin D receptor; alp 27.7 63 0.0022 24.7 4.0 29 53-81 115-143 (302)
219 3vhu_A Mineralocorticoid recep 27.7 65 0.0022 24.6 4.1 30 53-82 87-116 (294)
220 2phl_A Phaseolin; plant SEED s 25.9 1.4E+02 0.0049 23.9 5.9 63 88-156 247-321 (397)
221 3h5i_A Response regulator/sens 25.5 6.3 0.00021 25.7 -1.9 23 2-24 94-116 (140)
222 1nrl_A Orphan nuclear receptor 25.4 63 0.0022 25.0 3.6 31 52-82 132-162 (316)
223 2ea7_A 7S globulin-1; beta bar 25.0 1.7E+02 0.0059 23.7 6.3 56 73-129 260-333 (434)
224 3n53_A Response regulator rece 24.9 7.4 0.00025 25.3 -1.6 22 2-23 92-113 (140)
225 1zrr_A E-2/E-2' protein; nicke 24.6 45 0.0016 23.7 2.5 29 101-129 101-132 (179)
226 3dzy_D Peroxisome proliferator 24.4 69 0.0024 25.8 3.8 30 53-82 235-264 (419)
227 2oyz_A UPF0345 protein VPA0057 24.3 96 0.0033 19.7 3.7 42 88-131 31-73 (94)
228 1cc5_A Cytochrome C5; electron 22.3 39 0.0013 20.2 1.5 23 60-82 56-81 (83)
229 3cu4_A Cytochrome C family pro 21.5 69 0.0024 18.7 2.6 21 62-82 59-81 (85)
230 2exv_A Cytochrome C-551; alpha 21.4 34 0.0012 19.9 1.1 19 63-82 61-79 (82)
231 1ayg_A Cytochrome C-552; elect 21.3 35 0.0012 19.9 1.1 19 63-82 59-77 (80)
232 2eu9_A Dual specificity protei 21.2 1E+02 0.0034 23.0 4.1 37 33-75 310-346 (355)
233 1s8n_A Putative antiterminator 21.1 7.8 0.00027 27.2 -2.3 22 3-24 102-123 (205)
234 1a56_A C-551, ferricytochrome 21.1 24 0.00084 20.7 0.4 21 62-82 58-78 (81)
235 3rqi_A Response regulator prot 21.1 4.9 0.00017 27.9 -3.3 23 3-25 96-118 (184)
236 1gdv_A Cytochrome C6; RED ALGA 21.0 65 0.0022 18.6 2.4 21 62-82 57-78 (85)
237 1qo0_D AMIR; binding protein, 20.5 8.3 0.00028 26.9 -2.2 22 3-24 96-117 (196)
No 1
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.93 E-value=8e-25 Score=154.30 Aligned_cols=125 Identities=12% Similarity=0.125 Sum_probs=118.2
Q ss_pred hcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCcee
Q psy7149 41 LEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRS 120 (167)
Q Consensus 41 l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~ 120 (167)
+..|+..|+..+.+.+.++|+++|+|++|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|++..++..+
T Consensus 6 ~~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~~~ 84 (139)
T 3ocp_A 6 VTLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEY-GKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKL 84 (139)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEE-CSSCEEECTTSCCCEEEEEEECCEEEEETTEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEec-CCCCEEEeCCCcCCEEEEEEeCEEEEEECCEEE
Confidence 3567789999999999999999999999999999999999999999 999999999999999999999999998888888
Q ss_pred EEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 121 QMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 121 ~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
..+++|++||+.+++.+.++++++ .|.++|.++.|++++|.+++.+
T Consensus 85 ~~~~~G~~fGe~~~l~~~~~~~~~-~a~~~~~v~~i~~~~~~~l~~~ 130 (139)
T 3ocp_A 85 CTMGPGKVFGELAILYNCTRTATV-KTLVNVKLWAIDRQCFQTIMMR 130 (139)
T ss_dssp EEECTTCEESCHHHHHCCCCSSEE-EESSCEEEEEEEHHHHHHHHTC
T ss_pred EEeCCCCEeccHHHHCCCCcceEE-EECcceEEEEEcHHHHHHHHhh
Confidence 999999999999999999999999 7899999999999999999864
No 2
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=156.53 Aligned_cols=123 Identities=54% Similarity=1.028 Sum_probs=115.2
Q ss_pred CCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEcc-CCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEE
Q psy7149 44 DPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEK-AGTIVMNDGEELDSWSVVINGCVEVELSDGRSQM 122 (167)
Q Consensus 44 ~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~-~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~ 122 (167)
||.+|+..++..+..+|+++++|..|+++++..|+..+..+.| + +|++|+++|++++.+|+|++|.|+++..++....
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~~~ 80 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVV-EQAGAIILEDGQELDSWYVILNGTVEISHPDGKVEN 80 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEE-CSSSCEEECTTCEECEEEECCBSCEEEECSSSCEEE
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEe-cCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcEEE
Confidence 7899999999999999999999999999999999999999999 9 9999999999999999999999999986666688
Q ss_pred ecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 123 LQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 123 l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
+++|++||+.+++.+.++.++++.|.++|.++.|++++|.+++.+
T Consensus 81 l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~ 125 (134)
T 2d93_A 81 LFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNH 125 (134)
T ss_dssp ECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSC
T ss_pred ecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHH
Confidence 999999999999999998888756899999999999999999864
No 3
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.91 E-value=1.3e-23 Score=150.72 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=115.4
Q ss_pred hcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCcee
Q psy7149 41 LEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRS 120 (167)
Q Consensus 41 l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~ 120 (167)
..++...++..+.+.+.++|+++|+|.+|+++++..++..+....| ++|++|+++|++++++|+|++|.|+++.++..+
T Consensus 21 ~~~~~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~~ 99 (154)
T 3pna_A 21 YVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSF-IAGETVIQQGDEGDNFYVIDQGEMDVYVNNEWA 99 (154)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEE-CTTCEEECTTSCCCEEEEEEESCEEEEETTEEE
T ss_pred cccccCCCCHHHHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEE-CCCCEEEeCCCCCCeEEEEEecEEEEEECCEEE
Confidence 3455567888888889999999999999999999999999999999 999999999999999999999999999988888
Q ss_pred EEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 121 QMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 121 ~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
..+++|++||+.+++.+.++.+++ .|.++|.++.|++++|.+++.
T Consensus 100 ~~~~~G~~fGe~~~~~~~~~~~~v-~A~~~~~~~~i~~~~~~~ll~ 144 (154)
T 3pna_A 100 TSVGEGGSFGELALIYGTPRAATV-KAKTNVKLWGIDRDSYRRILM 144 (154)
T ss_dssp EEECTTCEECCHHHHHCCCCSSEE-EESSCEEEEEEEHHHHHHHTH
T ss_pred EEecCCCEeeehHhhcCCCcceEE-EECcceEEEEEeHHHHHHHHH
Confidence 999999999999999999999999 789999999999999999875
No 4
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.91 E-value=2.6e-23 Score=150.05 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=112.3
Q ss_pred CCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc----Cc
Q psy7149 43 KDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS----DG 118 (167)
Q Consensus 43 k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~----~~ 118 (167)
.+...|+..+.+.+.++|+++|+|++|+++++..|+..+..+.| ++|++|+++|++++++|+|++|.|+++.. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~ 101 (161)
T 3idb_B 23 RIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLV-KEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGR 101 (161)
T ss_dssp -CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEE-CTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEE
T ss_pred cccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEe-CCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeE
Confidence 44468888999999999999999999999999999999999999 99999999999999999999999999762 24
Q ss_pred eeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 119 RSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 119 ~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
.+..+++|++||+.+++.+.++++++ .|.++|.++.|++++|.+++.
T Consensus 102 ~~~~~~~G~~fGe~~~~~~~~~~~~v-~A~~~~~~~~i~~~~~~~l~~ 148 (161)
T 3idb_B 102 CVGNYDNRGSFGELALMYNTPRAATI-TATSPGALWGLDRVTFRRIIV 148 (161)
T ss_dssp EEEEEESCCEECGGGGTCCCCCSSEE-EESSSEEEEEEEHHHHHHHHH
T ss_pred EEEEcCCCCEechHHHHcCCCcccEE-EECCCeEEEEEeHHHHHHHHH
Confidence 67789999999999999999999999 789999999999999999875
No 5
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.91 E-value=3.5e-23 Score=163.01 Aligned_cols=124 Identities=12% Similarity=0.124 Sum_probs=118.3
Q ss_pred hcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCcee
Q psy7149 41 LEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRS 120 (167)
Q Consensus 41 l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~ 120 (167)
...|+..|+..+.+.+.+.|+++++|++|+++++..|+..+..+.| ++|++|+++|++++.+|+|++|.|++..++..+
T Consensus 22 ~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~~~ 100 (299)
T 3shr_A 22 QAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEY-GKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKL 100 (299)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEE-CTTCEEECTTCBCCCEEEEEESCEEEEETTEEE
T ss_pred CCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEE-CCCCEEEcCCCcCceEEEEEEEEEEEEECCEEE
Confidence 4577789999999999999999999999999999999999999999 999999999999999999999999999888889
Q ss_pred EEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 121 QMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 121 ~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
..+++|++|||.+++.+.|+++++ .|.++|+++.|++++|.+++.
T Consensus 101 ~~~~~G~~fGe~~ll~~~~~~~tv-~a~~~~~l~~i~~~~~~~i~~ 145 (299)
T 3shr_A 101 CTMGPGKVFGELAILYNCTRTATV-KTLVNVKLWAIDRQCFQTIMM 145 (299)
T ss_dssp EEECTTCEESCSGGGTTTBCCSEE-EESSCEEEEEECHHHHHHHHH
T ss_pred EEeCCCCeeeHhHHhcCCCCCcEE-EEcCCeEEEEEcHHHHHHHhh
Confidence 999999999999999999999999 789999999999999999874
No 6
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.90 E-value=3.5e-23 Score=186.75 Aligned_cols=131 Identities=32% Similarity=0.579 Sum_probs=121.5
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEE
Q psy7149 35 DRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVE 114 (167)
Q Consensus 35 ~~~r~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~ 114 (167)
...+.++.++|.+|+.++++.+.++|+++|.|++|+..+++.|+..+..+.++++|++|++|||.+++||||++|+|+|+
T Consensus 314 ~~~r~~l~k~~~~rt~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~ 393 (999)
T 4f7z_A 314 AHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVV 393 (999)
T ss_dssp HHHHHHHTSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEE
T ss_pred hhhhhhhcCCcccccHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEE
Confidence 55678999999999999999999999999999999999999999999987765789999999999999999999999998
Q ss_pred Ec-CceeEEecCCCeeeecccccCCceeeEEEEecC-ceEEEEEeHHHHHHHhc
Q psy7149 115 LS-DGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCD-DCQFVCITQTDYYRIQH 166 (167)
Q Consensus 115 ~~-~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~-~~~ll~i~~~~f~~ll~ 166 (167)
.. ++.++.|++||+|||+|++.+.||.+||+ |.+ +|++++|++++|.++|.
T Consensus 394 ~~~~~~v~~L~~Gd~FGElALL~~~PR~aTV~-a~~d~c~fl~i~k~df~~il~ 446 (999)
T 4f7z_A 394 IYGKGVVCTLHEGDDFGKLALVNDAPRAASIV-LREDNCHFLRVDKEDGNRILR 446 (999)
T ss_dssp ETTTEEEEEEETTCEECGGGGTCSCBCSSEEE-ESSSSEEEEEEEHHHHHHHHH
T ss_pred EcCCcceEEecCCCcccchhhccCCCeeEEEE-EecCceEEEEeeHHHHHHHHh
Confidence 74 56899999999999999999999999995 555 69999999999999985
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.89 E-value=1.5e-22 Score=145.09 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCC
Q psy7149 47 ERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVG 126 (167)
Q Consensus 47 ~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~G 126 (167)
.|..-......++|+++|+|++|+++.+..++..+..+.| ++|++|+++|++++.+|+|++|.|+++..+..+..+++|
T Consensus 16 l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~G 94 (160)
T 4f8a_A 16 MRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHC-APGDLIYHAGESVDSLCFVVSGSLEVIQDDEVVAILGKG 94 (160)
T ss_dssp CHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEE-CTTCEEECTTSBCCEEEEEEESEEEEEETTEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeee-CCCCEEEeCCCCccEEEEEEeeEEEEEECCEEEEEecCC
Confidence 3433334445678999999999999999999999999999 999999999999999999999999999988889999999
Q ss_pred CeeeecccccC--CceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 127 DSFGILPTMEK--LYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 127 d~FGe~all~~--~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
++||+.+++.+ .++++++ .|.++|+++.|++++|.+++.
T Consensus 95 ~~fG~~~~~~~~~~~~~~~~-~a~~~~~v~~i~~~~~~~l~~ 135 (160)
T 4f8a_A 95 DVFGDVFWKEATLAQSCANV-RALTYCDLHVIKRDALQKVLE 135 (160)
T ss_dssp CEEECCTTTCSSCCBCSSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred CEeCcHHHhcCcccceEEEE-EECCceEEEEEcHHHHHHHHH
Confidence 99999999988 6889999 789999999999999999875
No 8
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.89 E-value=1.1e-22 Score=183.66 Aligned_cols=127 Identities=20% Similarity=0.425 Sum_probs=118.5
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc
Q psy7149 37 VRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS 116 (167)
Q Consensus 37 ~r~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~ 116 (167)
+-.+|.|+|.+|+.+|++.|+..|+++++|+.|++.++..||.++.++.| ++|++||+|||.+++||||++|+|.|...
T Consensus 21 ~i~~L~K~p~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~-~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~ 99 (999)
T 4f7z_A 21 WIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENL-EKGITLFRQGDIGTNWYAVLAGSLDVKVS 99 (999)
T ss_dssp HHHHHHSCSSSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEE-CTTCEEECTTSCCCEEEEEEESEEEEEEC
T ss_pred HHHHhcCCcccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEE-CCCCEEEcCCCcCCEEEEEEeeEEEEEEe
Confidence 44778999999999999999999999999999999999999999999999 99999999999999999999999999762
Q ss_pred -------CceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 117 -------DGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 117 -------~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+..+..+++|+.||| +++.+.||++|+ .|.++|++|+|++++|..++.
T Consensus 100 ~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv-~a~~~s~l~~l~r~~F~~i~~ 154 (999)
T 4f7z_A 100 ETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATI-VTRESSELLRIEQEDFKALWE 154 (999)
T ss_dssp SSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEE-EESSSEEEEEEEHHHHHHHHH
T ss_pred cCCCCCCceeEEEecCCcchhh-hhccCCCcceEE-EeccceEEEEEEHHHHHHHHH
Confidence 246788999999999 899999999999 688999999999999998864
No 9
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.89 E-value=2.2e-22 Score=157.56 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=118.5
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCc
Q psy7149 39 ECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDG 118 (167)
Q Consensus 39 ~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~ 118 (167)
.....+...|+.++.+.+.+.|+++|+|++|+++++..++..+....| ++|++|+++|++++.+|+|++|.|+++.++.
T Consensus 20 ~~~~~~~~~ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g~ 98 (291)
T 2qcs_B 20 ASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSF-IAGETVIQQGDEGDNFYVIDQGEMDVYVNNE 98 (291)
T ss_dssp HTCCCCCCCCCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEE-CTTCEEECTTSBCCEEEEEEECCEEEEETTE
T ss_pred cccCCCCCCCCHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEE-CCCCEEEeCCCCCceEEEEeeeEEEEEECCe
Confidence 335567789999999999999999999999999999999999999999 9999999999999999999999999998777
Q ss_pred eeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 119 RSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 119 ~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
.+..+++|++|||.+++.+.++.+++ .|.++|.++.|++++|.+++.
T Consensus 99 ~~~~l~~G~~fGe~~l~~~~~~~~tv-~a~~~~~~~~i~~~~~~~~~~ 145 (291)
T 2qcs_B 99 WATSVGEGGSFGELALIYGTPRAATV-KAKTNVKLWGIDRDSYRRILM 145 (291)
T ss_dssp EEEEECTTCEECGGGGTCCCBCSSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred EEEEcCCCCccchHHHhcCCCCceEE-EECCCEEEEEEEhHHHHHHHh
Confidence 88999999999999999999999999 789999999999999999874
No 10
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.89 E-value=3.3e-22 Score=166.46 Aligned_cols=131 Identities=32% Similarity=0.610 Sum_probs=121.5
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhccee-EEccCCcEEEecCCCCCeEEEEEEeEEE
Q psy7149 34 KDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFA-VVEKAGTIVMNDGEELDSWSVVINGCVE 112 (167)
Q Consensus 34 ~~~~r~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~-~~~~~ge~I~~~Gd~~~~lyiI~~G~v~ 112 (167)
...++.++.++|..|+.++++.+.++|+++|+|..|+++++..++..+... .| ++|++|+++|++++.+|||++|.|+
T Consensus 313 ~~~~~~~l~~~~~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~-~~g~~i~~~G~~~~~~yiI~~G~v~ 391 (469)
T 1o7f_A 313 DAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHA-KGGTVLFNQGEEGTSWYIILKGSVN 391 (469)
T ss_dssp HHHHHHHTTSCTTSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEEC-STTCEEECTTSCCCEEEEEEESEEE
T ss_pred hHHHHHHHcCCchhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEe-cCCCEEEeCCCcCCeEEEEEEeEEE
Confidence 356788999999999999999999999999999999999999999999865 77 9999999999999999999999999
Q ss_pred EEEcC-ceeEEecCCCeeeecccccCCceeeEEEEecC-ceEEEEEeHHHHHHHhc
Q psy7149 113 VELSD-GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCD-DCQFVCITQTDYYRIQH 166 (167)
Q Consensus 113 v~~~~-~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~-~~~ll~i~~~~f~~ll~ 166 (167)
++..+ +.+..+++|++|||.+++.+.++.+++ .|.+ +|+++.|++++|.+++.
T Consensus 392 v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv-~a~~~~~~~~~i~~~~f~~ll~ 446 (469)
T 1o7f_A 392 VVIYGKGVVCTLHEGDDFGKLALVNDAPRAASI-VLREDNCHFLRVDKEDFNRILR 446 (469)
T ss_dssp EEETTTEEEEEEETTCEECGGGGTCCSCCSSEE-EESSSSEEEEEEEHHHHHHHHH
T ss_pred EEEcCCeeEEEecCCCEEEEehhhcCCCceEEE-EEecCCEEEEEEcHHHHHHHHH
Confidence 98754 488999999999999999999999999 6777 79999999999999875
No 11
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.88 E-value=3.3e-22 Score=140.18 Aligned_cols=112 Identities=17% Similarity=0.250 Sum_probs=104.1
Q ss_pred HHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeee
Q psy7149 51 DDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFG 130 (167)
Q Consensus 51 ~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FG 130 (167)
.+.....+.|+++|+|++|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++..+ ...+++|++||
T Consensus 4 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~~~G~~~G 80 (138)
T 1vp6_A 4 GDFVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTV-PAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFG 80 (138)
T ss_dssp HHHHHHHHHHTTCGGGGGCCHHHHHHHHHHCEEEEE-CTTCEEECTTSCCCEEEEEEESCEEECSSS--CEEECTTCEEC
T ss_pred hhHHHHHHHHHhChhhhcCCHHHHHHHHHhhcEEEe-CCCCEEEeCCCCcceEEEEEeeEEEEEeCC--cceECCCCEee
Confidence 466678899999999999999999999999999999 999999999999999999999999998755 45789999999
Q ss_pred ecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 131 ILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 131 e~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+.+++.+.++++++ .|.++|.++.|++++|.+++.
T Consensus 81 ~~~~~~~~~~~~~~-~a~~~~~~~~i~~~~~~~l~~ 115 (138)
T 1vp6_A 81 EMALISGEPRSATV-SAATTVSLLSLHSADFQMLCS 115 (138)
T ss_dssp HHHHHHCCCCSSCE-EESSSEEEEEEEHHHHHHHHH
T ss_pred ehHhccCCCceeEE-EECCCEEEEEECHHHHHHHHH
Confidence 99999999999999 789999999999999999875
No 12
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.2e-22 Score=153.43 Aligned_cols=111 Identities=18% Similarity=0.295 Sum_probs=105.7
Q ss_pred HHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecc
Q psy7149 54 EQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILP 133 (167)
Q Consensus 54 ~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~a 133 (167)
+.+.+.|+++|+|++|+++++..++..+..+.| ++|++|+++|++++++|+|++|.|+++..+..+..+++|++|||.+
T Consensus 3 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~ 81 (246)
T 3of1_A 3 QRLEKSIRNNFLFNKLDSDSKRLVINCLEEKSV-PKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELA 81 (246)
T ss_dssp HHHHHHHHTCTTTTTSCHHHHHHHHTTCEEEEE-CTTCEEECTTCCCCEEEEEEECCEEEESTTSCCEEECTTCEECHHH
T ss_pred HHHHHHHhcCHhhHhCCHHHHHHHHHhhceEEE-CCCCEEEecCCCCCEEEEEEeeEEEEEECCEEEEecCCCCeeehhH
Confidence 467889999999999999999999999999999 9999999999999999999999999998877889999999999999
Q ss_pred cccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 134 TMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 134 ll~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
++.+.++++++ .|.++|.++.|++++|.+++.
T Consensus 82 l~~~~~~~~tv-~a~~~~~~~~i~~~~~~~~~~ 113 (246)
T 3of1_A 82 LMYNSPRAATV-VATSDCLLWALDRLTFRKILL 113 (246)
T ss_dssp HHHTCCCSSEE-EESSCEEEEEEEHHHHHHTTT
T ss_pred HhcCCCCCcEE-EECCCeEEEEEEhHHHHHHHH
Confidence 99999999999 789999999999999999875
No 13
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.88 E-value=4.1e-22 Score=139.99 Aligned_cols=107 Identities=13% Similarity=0.184 Sum_probs=98.2
Q ss_pred HHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc-----Cce---eEEecCCCee
Q psy7149 58 DFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-----DGR---SQMLQVGDSF 129 (167)
Q Consensus 58 ~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~-----~~~---~~~l~~Gd~F 129 (167)
+.|+++|+|++|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++.. ... +..+++|++|
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSF-PTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEE-CTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEec-CCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 57899999999999999999999999999 99999999999999999999999999752 234 7889999999
Q ss_pred eecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 130 GILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 130 Ge~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
|+.+++.+.++++++ .|.++|+++.|++++|.+++.
T Consensus 85 G~~~~~~~~~~~~~~-~a~~~~~~~~i~~~~~~~l~~ 120 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSA-RATKPVRVVDINGARLREMSE 120 (142)
T ss_dssp CGGGSSTTCBCSSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred chHHHcCCCCceEEE-EECCcEEEEEEeHHHHHHHHH
Confidence 999999999999999 789999999999999999875
No 14
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.87 E-value=3.6e-22 Score=163.29 Aligned_cols=124 Identities=20% Similarity=0.223 Sum_probs=117.4
Q ss_pred hcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCcee
Q psy7149 41 LEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRS 120 (167)
Q Consensus 41 l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~ 120 (167)
..++...|+.++.+.+.+.|+++++|++|+++++..|+..+..+.| ++|++|+++|++++.+|+|++|.|+++.++..+
T Consensus 113 ~~~~~~~ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~-~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~~v 191 (381)
T 4din_B 113 YVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTH-IAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWV 191 (381)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEEC-CTTCBSSCTTSBCCEEEECSSSEEEEEETTEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEE-CCCCEEEeCCCCCCeEEEEEeeEEEEEECCeEe
Confidence 4466678999999999999999999999999999999999999999 999999999999999999999999999988889
Q ss_pred EEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 121 QMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 121 ~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
..+++|++|||++++.+.||.+++ .|.++|.++.|++++|.+++.
T Consensus 192 ~~l~~G~~fGe~all~~~~r~atv-~A~~~~~l~~i~~~~f~~ll~ 236 (381)
T 4din_B 192 TNISEGGSFGELALIYGTPRAATV-KAKTDLKLWGIDRDSYRRILM 236 (381)
T ss_dssp EEEESSCCBCGGGGTSCCBCSSEE-EESSSCEEEEEEHHHHHHHHH
T ss_pred eeCCCCCEEEchHHhcCCCcceEE-EECCCEEEEEEchHHHHHhhh
Confidence 999999999999999999999999 789999999999999999874
No 15
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.87 E-value=2.6e-21 Score=161.05 Aligned_cols=125 Identities=20% Similarity=0.435 Sum_probs=116.9
Q ss_pred HHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--
Q psy7149 39 ECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-- 116 (167)
Q Consensus 39 ~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~-- 116 (167)
.++.++|..|+..+.+.+.+.|+++++|++|+++++..|+..+..+.| ++|++||++|++++.+|+|++|.|+++..
T Consensus 23 ~~l~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~ 101 (469)
T 1o7f_A 23 ACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENL-EKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (469)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEE-CTTCEEECTTSBCCEEEEEEESCEEEEECSS
T ss_pred HHhcCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEE-CCCCEEEeCCCCCCcEEEEEeeEEEEEEecC
Confidence 457899999999999999999999999999999999999999999999 99999999999999999999999999862
Q ss_pred C-----ceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 117 D-----GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 117 ~-----~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+ ..+..+++|++||+.+ +.+.++++++ .|.++|.++.|++++|.+++.
T Consensus 102 ~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv-~A~~~~~l~~i~~~~~~~l~~ 154 (469)
T 1o7f_A 102 SSHQDAVTICTLGIGTAFGESI-LDNTPRHATI-VTRESSELLRIEQEDFKALWE 154 (469)
T ss_dssp SCGGGCEEEEEECTTCEECGGG-GGTCBCSSEE-EESSSEEEEEEEHHHHHHHHH
T ss_pred CCCCcceEEEEccCCCCcchhh-hCCCCccceE-EEccceeEEEEcHHHHHHHHH
Confidence 1 4678899999999999 9999999999 789999999999999999874
No 16
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.87 E-value=2.2e-21 Score=160.48 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=113.4
Q ss_pred CCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc----Cc
Q psy7149 43 KDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS----DG 118 (167)
Q Consensus 43 k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~----~~ 118 (167)
++...|+.++.+.+.+.|+++++|++|+++++..|+..+..+.| ++|++|+++|+.++.+|||++|.|+++.. ..
T Consensus 130 ~~~~~ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~-~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~ 208 (416)
T 3tnp_B 130 RIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLV-KEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGR 208 (416)
T ss_dssp CCCCCCCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEE-CTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEE
T ss_pred ccCCCCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEe-CCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEE
Confidence 44568999999999999999999999999999999999999999 99999999999999999999999999763 24
Q ss_pred eeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 119 RSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 119 ~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
.+..+++|++|||++++.+.+|.+++ .|.++|.++.|++++|.+++.
T Consensus 209 ~v~~l~~G~~fGe~all~~~pr~atv-~A~~d~~l~~i~r~~f~~ll~ 255 (416)
T 3tnp_B 209 CVGNYDNRGSFGELALMYNTPKAATI-TATSPGALWGLDRVTFRRIIV 255 (416)
T ss_dssp EEEEEESCCEECGGGGTSCCCCSSEE-EESSSEEEEEEEHHHHHHHHH
T ss_pred EEEEecCCCEEeeHHHhcCCCcccEE-EEccCeEEEEEeehhhhhhhh
Confidence 57889999999999999999999999 789999999999999999875
No 17
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.87 E-value=3.4e-22 Score=149.48 Aligned_cols=109 Identities=14% Similarity=0.245 Sum_probs=102.2
Q ss_pred HHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccc
Q psy7149 56 LLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTM 135 (167)
Q Consensus 56 i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all 135 (167)
....|+++|+|++++++.+..|+..+....| ++|++|+++|++++.+|||.+|.|++...++....+++|++||+.+++
T Consensus 70 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~-~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~ 148 (202)
T 3bpz_A 70 CRKLVASMPLFANADPNFVTAMLTKLKFEVF-QPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLL 148 (202)
T ss_dssp THHHHHTCHHHHTSCHHHHHHHHHHCEEEEE-CTTCEEECTTSBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHHH
T ss_pred HHHHHhcCCchhcCCHHHHHHHHHhCCceEE-CCCCEEEECCCcCCeEEEEeccEEEEEECCCeEEEEcCCCEeccHHHh
Confidence 4568899999999999999999999999999 999999999999999999999999998877666789999999999999
Q ss_pred cCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 136 EKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 136 ~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
.+.++++++ .|.++|.++.|++++|.+++.
T Consensus 149 ~~~~~~~~v-~a~~~~~l~~i~~~~f~~ll~ 178 (202)
T 3bpz_A 149 TRGRRTASV-RADTYCRLYSLSVDNFNEVLE 178 (202)
T ss_dssp HCSBCSSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred cCCCcccEE-EEeeEEEEEEEEHHHHHHHHH
Confidence 999999999 789999999999999999875
No 18
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.87 E-value=3.5e-22 Score=150.32 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=100.4
Q ss_pred HhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCC
Q psy7149 59 FTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKL 138 (167)
Q Consensus 59 ~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~ 138 (167)
.+.++|+|++++++.+..|+..+....| ++|++|+++|++++.+|+|.+|.|++..++..+..+++|++|||.+++.+.
T Consensus 76 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~-~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~~ 154 (212)
T 3ukn_A 76 ELLQLPLFESASRGCLRSLSLIIKTSFC-APGEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTKEQ 154 (212)
T ss_dssp GGGGSGGGTTCCHHHHHHHHHHCEEEEE-CTTCEEECTTSBCCEEEEEEECCEEEESSSCEEEEECTTCEEECSCCSSSS
T ss_pred HHHhcHHhhcCCHHHHHHHHHHhheEEe-CCCCEEEECCCcccEEEEEEecEEEEEECCeEEEEecCCCCcCcHHhccCC
Confidence 4558999999999999999999999999 999999999999999999999999999888889999999999999999988
Q ss_pred --ceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 139 --YHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 139 --~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
++++++ .|.++|.++.|++++|.+++.
T Consensus 155 ~~~~~~~v-~a~~~~~l~~i~~~~f~~ll~ 183 (212)
T 3ukn_A 155 VIKTNANV-KALTYCDLQYISLKGLREVLR 183 (212)
T ss_dssp CCBBCSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred CCCcceEE-EEcccEEEEEEeHHHHHHHHH
Confidence 999999 789999999999999999875
No 19
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.87 E-value=3.2e-21 Score=137.18 Aligned_cols=114 Identities=13% Similarity=0.148 Sum_probs=103.3
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc-----CceeEEecCC
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-----DGRSQMLQVG 126 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~-----~~~~~~l~~G 126 (167)
....+.++|+++++|..|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++.. ...+..+++|
T Consensus 6 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G 84 (154)
T 2z69_A 6 FQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNL-DKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNER 84 (154)
T ss_dssp HHHHHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEE-CTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTT
T ss_pred CChhHHHHhhcChhhcCCCHHHHHHHHhhCcEEEe-cCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCC
Confidence 34567789999999999999999999999999999 99999999999999999999999999752 1367889999
Q ss_pred CeeeecccccCCc-eeeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 127 DSFGILPTMEKLY-HEGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 127 d~FGe~all~~~~-r~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
++||+.+++.+.+ +.+++ .|.++|+++.|++++|.+++.+
T Consensus 85 ~~~G~~~~~~~~~~~~~~~-~a~~~~~~~~i~~~~~~~l~~~ 125 (154)
T 2z69_A 85 NTFAEAMMFMDTPNYVATA-QAVVPSQLFRFSNKAYLRQLQD 125 (154)
T ss_dssp EEESGGGGGSSCSBCSSEE-EESSSEEEEEEEHHHHHHHHTT
T ss_pred CeeccHhhccCCCCCceEE-EEccceEEEEECHHHHHHHHHH
Confidence 9999999999988 89999 7899999999999999998753
No 20
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.87 E-value=5.6e-22 Score=147.78 Aligned_cols=110 Identities=14% Similarity=0.224 Sum_probs=102.2
Q ss_pred HHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc-CceeEEecCCCeeeecc
Q psy7149 55 QLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-DGRSQMLQVGDSFGILP 133 (167)
Q Consensus 55 ~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~-~~~~~~l~~Gd~FGe~a 133 (167)
.....|+++|+|++++++.+..|+..+....| ++|++|+++|++++.+|||.+|.|+++.. +..+..+++|++||+.+
T Consensus 68 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~-~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~ 146 (198)
T 2ptm_A 68 NCRDLVASVPFFVGADSNFVTRVVTLLEFEVF-QPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEIC 146 (198)
T ss_dssp HTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEE-CTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHH
T ss_pred HHHHHHhcCcchhcCCHHHHHHHHHhccceee-CCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHH
Confidence 34578999999999999999999999999999 99999999999999999999999999864 34788999999999999
Q ss_pred cccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 134 TMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 134 ll~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
++.+.++++++ .|.++|.++.|++++|.+++.
T Consensus 147 ~~~~~~~~~~~-~a~~~~~l~~i~~~~f~~ll~ 178 (198)
T 2ptm_A 147 LLTRERRVASV-KCETYCTLFSLSVQHFNQVLD 178 (198)
T ss_dssp HHHSSCCSSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred HcCCCccceEE-EEeeEEEEEEEeHHHHHHHHH
Confidence 99999999999 789999999999999999875
No 21
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.87 E-value=8.5e-22 Score=146.00 Aligned_cols=114 Identities=14% Similarity=0.280 Sum_probs=104.8
Q ss_pred HHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecC
Q psy7149 51 DDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQV 125 (167)
Q Consensus 51 ~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~ 125 (167)
...+.+.++|+++|+|++|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++.. + ..+..++|
T Consensus 32 ~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~-~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~ 110 (187)
T 3gyd_A 32 KYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAA-PRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGA 110 (187)
T ss_dssp GGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEE-CTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEET
T ss_pred HHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEe-CCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccC
Confidence 345678899999999999999999999999999999 99999999999999999999999999763 2 46788999
Q ss_pred CCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 126 GDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 126 Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
|++||+.+++.+.++++++ .|.++|+++.|++++|.+++.
T Consensus 111 G~~fGe~~~l~~~~~~~~v-~A~~~~~v~~i~~~~~~~l~~ 150 (187)
T 3gyd_A 111 GAIIGEMSMIDGMPRSASC-VASLPTDFAVLSRDALYQLLA 150 (187)
T ss_dssp TCEESHHHHHHCCCCSSEE-EEEEEEEEEEEEHHHHHHHHH
T ss_pred CCeeeeHHHhCCCCeeEEE-EECCCeEEEEEcHHHHHHHHH
Confidence 9999999999999999999 688999999999999999875
No 22
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.5e-21 Score=147.57 Aligned_cols=127 Identities=14% Similarity=0.245 Sum_probs=114.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEE
Q psy7149 34 KDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV 113 (167)
Q Consensus 34 ~~~~r~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v 113 (167)
++.++.++...|..+ ......+++++|+|..+++..+..++..+..+.| ++|++|+++|++++.+|+|.+|.|++
T Consensus 105 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~I~~G~v~v 179 (246)
T 3of1_A 105 RLTFRKILLGSSFKK----RLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIY-QPGETIIREGDQGENFYLIEYGAVDV 179 (246)
T ss_dssp HHHHHHTTTTTTSHH----HHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEE-CTTCEEECTTSBCCEEEEEEECEEEE
T ss_pred hHHHHHHHHHhHHHH----HHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEe-CCCCEEEeCCCcCCEEEEEEecEEEE
Confidence 477888887776432 2345678899999999999999999999999999 99999999999999999999999999
Q ss_pred EEcCc-eeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 114 ELSDG-RSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 114 ~~~~~-~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+..+. .+..+++|++|||.+++.+.||.+++ .|.++|.++.|++++|.+++.
T Consensus 180 ~~~~~~~~~~l~~g~~fGe~~~~~~~~~~~~v-~a~~~~~~~~i~~~~f~~ll~ 232 (246)
T 3of1_A 180 SKKGQGVINKLKDHDYFGEVALLNDLPRQATV-TATKRTKVATLGKSGFQRLLG 232 (246)
T ss_dssp EETTTEEEEEEETTCEECHHHHHHTCBCSSEE-EESSCEEEEEEEHHHHHHHCT
T ss_pred EEcCCceEEEcCCCCcccHHHHhCCCCcccEE-EECCCEEEEEEeHHHHHHHhc
Confidence 88654 78999999999999999999999999 689999999999999999875
No 23
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.86 E-value=2.3e-21 Score=169.32 Aligned_cols=135 Identities=30% Similarity=0.563 Sum_probs=120.6
Q ss_pred ccHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcc-eeEEccCCcEEEecCCCCCeEEEEEEe
Q psy7149 31 LIVKDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMV-FAVVEKAGTIVMNDGEELDSWSVVING 109 (167)
Q Consensus 31 l~~~~~~r~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~-~~~~~~~ge~I~~~Gd~~~~lyiI~~G 109 (167)
+...+.+|.++.++|..|+.++.+.+.+.|+++++|++|+++++..++..+. .+.| ++|++|+++|++++++|+|++|
T Consensus 5 ~~p~~~~r~iL~k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~-~kGe~I~~eGd~~~~lyiIlsG 83 (694)
T 3cf6_E 5 SFPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHA-KGGTVLFNQGEEGTSWYIILKG 83 (694)
T ss_dssp ------CHHHHHSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEEC-STTCEEECTTSBCCEEEEEEES
T ss_pred cCcHHHHHHHHcCChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEE-CCCCEEECCCCcCCeEEEEEEE
Confidence 3445778899999999999999999999999999999999999999999998 5788 9999999999999999999999
Q ss_pred EEEEEEcC-ceeEEecCCCeeeecccccCCceeeEEEEecC-ceEEEEEeHHHHHHHhcC
Q psy7149 110 CVEVELSD-GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCD-DCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 110 ~v~v~~~~-~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~-~~~ll~i~~~~f~~ll~~ 167 (167)
.|+++..+ ..+..+++|++||+.+++.+.++++++ .|.+ +|+++.|++++|.+++.+
T Consensus 84 ~V~v~~~g~~il~~l~~Gd~fGe~al~~~~~~~~tv-~A~edd~~ll~I~~~~f~~ll~~ 142 (694)
T 3cf6_E 84 SVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASI-VLREDNCHFLRVDKEDFNRILRD 142 (694)
T ss_dssp EEEEEETTTEEEEEEETTCEECHHHHHHTCBCSSEE-EECSSSEEEEEEEHHHHHHHTTT
T ss_pred EEEEEEeCCEEEEEeCCCCEeehHHHhCCCCceEEE-EEeeCceEEEEEeHHHHHHHHHH
Confidence 99998754 478899999999999999999999999 6888 599999999999999863
No 24
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.85 E-value=3.1e-21 Score=136.36 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=99.4
Q ss_pred HHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeeee
Q psy7149 57 LDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFGI 131 (167)
Q Consensus 57 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe 131 (167)
.++++++|+|..|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++.. + ..+..+++|++||+
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~ 82 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTL-ARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGE 82 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEE-CTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEe-CCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEech
Confidence 357899999999999999999999999999 99999999999999999999999999762 2 35788999999999
Q ss_pred cccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 132 LPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 132 ~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
.+++.+.++.+++ .|.++|.++.|++++|.+++.
T Consensus 83 ~~~~~~~~~~~~~-~a~~~~~~~~i~~~~~~~l~~ 116 (149)
T 2pqq_A 83 LSLFDPGPRTATG-TALTEVKLLALGHGDLQPWLN 116 (149)
T ss_dssp GGGTSCEECSSEE-EESSCEEEEEEEGGGHHHHHH
T ss_pred HHhcCCCCcceEE-EEccceEEEEEeHHHHHHHHH
Confidence 9999999999999 789999999999999999875
No 25
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.84 E-value=2.6e-20 Score=146.58 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=113.3
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEE
Q psy7149 34 KDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV 113 (167)
Q Consensus 34 ~~~~r~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v 113 (167)
++.++.++.+.|. .....+..+++++|+|..++++++..++..+..+.| ++|++|+++|++++.+|+|++|.|++
T Consensus 137 ~~~~~~i~~~~~~----~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~-~~g~~I~~~G~~~~~~yiI~~G~v~~ 211 (299)
T 3shr_A 137 RQCFQTIMMRTGL----IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHY-ENGEYIIRQGARGDTFFIISKGKVNV 211 (299)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEE-CTTCEEECTTCEECEEEEEEESEEEE
T ss_pred HHHHHHHhhHhHH----HHHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEE-CCCCEEEeCCCCCCEEEEEEeeEEEE
Confidence 4677777765552 234567789999999999999999999999999999 99999999999999999999999999
Q ss_pred EEcC------ceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 114 ELSD------GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 114 ~~~~------~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
+... ..+..+++|++|||.+++.+.++++++ .|.++|.++.|++++|.+++.+
T Consensus 212 ~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~tv-~a~~~~~l~~i~~~~f~~ll~~ 270 (299)
T 3shr_A 212 TREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANV-IAAEAVTCLVIDRDSFKHLIGG 270 (299)
T ss_dssp EECCSSSCCCEEEEEEETTCEECGGGGSSSEECSSEE-EESSSEEEEEEEHHHHHHHHTT
T ss_pred EEecCCCCcceEEEEcCCCCEeChHHHhCCCCcceEE-EECCCEEEEEEeHHHHHHHHcc
Confidence 8643 367889999999999999999999999 6899999999999999999863
No 26
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.83 E-value=3e-20 Score=141.43 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=102.4
Q ss_pred HHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCe
Q psy7149 54 EQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDS 128 (167)
Q Consensus 54 ~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~ 128 (167)
+...++|+++|+|+.|+++++..++..+..+.| ++|++|+++|++++++|+|++|.|+++.. + ..+..++||++
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~ 85 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSY-DRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGES 85 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEE-CTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEE-CCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCE
Confidence 356789999999999999999999999999999 99999999999999999999999999762 2 36788999999
Q ss_pred eeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 129 FGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 129 FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
||+.+++.+.++++++ .|.++|+++.|++++|.+++.
T Consensus 86 ~G~~~~~~~~~~~~~~-~a~~~~~v~~i~~~~~~~l~~ 122 (237)
T 3fx3_A 86 FGEAVALRNTPYPVSA-EAVTPCEVMHIPSPVFVSLMR 122 (237)
T ss_dssp ECHHHHHHTCCCSSEE-EESSSEEEEEEEHHHHHHHHH
T ss_pred echHHHhcCCCCCceE-EECCceEEEEEcHHHHHHHHH
Confidence 9999999999999999 789999999999999999874
No 27
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.83 E-value=2.8e-20 Score=139.45 Aligned_cols=105 Identities=12% Similarity=0.190 Sum_probs=95.3
Q ss_pred hhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeeeeccc
Q psy7149 60 TQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFGILPT 134 (167)
Q Consensus 60 L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe~al 134 (167)
|+++|+|++|+++++..++..+..+.| ++|++|+++|++++++|+|++|.|+++.. + ..+..++||++||+.++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~ 79 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLY-PQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSL 79 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEE-CTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEe-CCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhh
Confidence 578999999999999999999999999 99999999999999999999999999762 2 26788999999999999
Q ss_pred ccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 135 MEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 135 l~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+.+.++++++ .|.++|+++.|++++|.+++.
T Consensus 80 ~~~~~~~~~~-~a~~~~~v~~i~~~~~~~l~~ 110 (216)
T 4ev0_A 80 LDEGERSASA-VAVEDTELLALFREDYLALIR 110 (216)
T ss_dssp HHCCBCSSEE-EESSSEEEEEEEHHHHHHHHH
T ss_pred cCCCCcceEE-EEcCCEEEEEEcHHHHHHHHH
Confidence 9999999999 789999999999999999874
No 28
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.83 E-value=1.4e-20 Score=142.32 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=100.5
Q ss_pred HHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeee
Q psy7149 56 LLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFG 130 (167)
Q Consensus 56 i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FG 130 (167)
+.++|+++|+|..|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++.. + ..+..++||++||
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G 82 (227)
T 3d0s_A 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDF-PRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFG 82 (227)
T ss_dssp CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEE-CTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCeEEEe-CCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEe
Confidence 4568999999999999999999999999999 99999999999999999999999999762 2 3577899999999
Q ss_pred ecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 131 ILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 131 e~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+.+++.+.++++++ .|.++|+++.|++++|.+++.
T Consensus 83 ~~~~~~~~~~~~~~-~A~~~~~v~~i~~~~~~~l~~ 117 (227)
T 3d0s_A 83 ELSIFDPGPRTSSA-TTITEVRAVSMDRDALRSWIA 117 (227)
T ss_dssp CHHHHSCSCCSSEE-EESSCEEEEEEEHHHHHHTTS
T ss_pred eHHHcCCCCceeEE-EEcccEEEEEEeHHHHHHHHH
Confidence 99999999999999 789999999999999999875
No 29
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.83 E-value=4.3e-20 Score=147.44 Aligned_cols=107 Identities=12% Similarity=0.094 Sum_probs=100.3
Q ss_pred HHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcC----ceeEEecCCCeeeec
Q psy7149 57 LDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSD----GRSQMLQVGDSFGIL 132 (167)
Q Consensus 57 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~----~~~~~l~~Gd~FGe~ 132 (167)
.++|+++|+|++|+++++..|+..+..+.| ++|++|+++|++++++|+|++|.|+++..+ ..+..+++|++|||.
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~ 90 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRA-AAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEI 90 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEE-CTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEE-CCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHH
Confidence 378999999999999999999999999999 999999999999999999999999997632 278889999999999
Q ss_pred ccccCCceeeEEEEecCceEEEEEeHHHHHHHh
Q psy7149 133 PTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQ 165 (167)
Q Consensus 133 all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll 165 (167)
+++.+.++++++ .|.++|+++.|++++|.+++
T Consensus 91 ~l~~~~~~~~~v-~A~~~~~~~~i~~~~~~~l~ 122 (333)
T 4ava_A 91 ALLRDSPRSATV-TTIEPLTGWTGGRGAFATMV 122 (333)
T ss_dssp HHHHTCBCSSEE-EESSCEEEEEECHHHHHHHH
T ss_pred HhcCCCCceEEE-EEecCEEEEEEcHHHHHHHH
Confidence 999999999999 79999999999999999987
No 30
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.83 E-value=3.3e-20 Score=140.71 Aligned_cols=109 Identities=12% Similarity=0.100 Sum_probs=100.6
Q ss_pred HHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeee
Q psy7149 56 LLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFG 130 (167)
Q Consensus 56 i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FG 130 (167)
+.++|+++|+|.+|+++++..++..+..+.| ++|++|+++|++++++|+|++|.|+++.. + ..+..++||++||
T Consensus 4 ~~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G 82 (231)
T 3e97_A 4 RLDDLKRSPLFQNVPEDAMREALKVVTERNF-QPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVG 82 (231)
T ss_dssp CHHHHHTSGGGTTCCHHHHHHHHHTEEEEEE-CTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEES
T ss_pred HHHHHhcChhhccCCHHHHHHHHHhcEEEEE-CCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEe
Confidence 3578999999999999999999999999999 99999999999999999999999999762 2 3578899999999
Q ss_pred ecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 131 ILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 131 e~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+.+++.+.++++++ .|.++|+++.|++++|.+++.
T Consensus 83 ~~~~~~~~~~~~~~-~a~~~~~v~~i~~~~~~~l~~ 117 (231)
T 3e97_A 83 ETAVLAHQERSASV-RALTPVRTLMLHREHFELILR 117 (231)
T ss_dssp TTTTTCCCCCCEEE-EESSCEEEEEECHHHHHHHHH
T ss_pred eHHHhCCCCceEEE-EECCcEEEEEEeHHHHHHHHH
Confidence 99999999999999 789999999999999999874
No 31
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.83 E-value=9.5e-20 Score=138.73 Aligned_cols=112 Identities=12% Similarity=0.137 Sum_probs=101.9
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhh--cceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc-----CceeEEecC
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGV--MVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-----DGRSQMLQV 125 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~--~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~-----~~~~~~l~~ 125 (167)
-......|+++|+|+.|+++++..++.. +..+.| ++|++|+++|++++.+|+|++|.|+++.. ...+..++|
T Consensus 13 ~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~-~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~ 91 (232)
T 1zyb_A 13 METMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKH-KAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEA 91 (232)
T ss_dssp HHHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEE-CTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEES
T ss_pred HHHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEE-CCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccC
Confidence 3456788999999999999999999998 999999 99999999999999999999999999752 246788999
Q ss_pred CCeeeecccccCCc-eeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 126 GDSFGILPTMEKLY-HEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 126 Gd~FGe~all~~~~-r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
|++||+.+++.+.+ +++++ .|.++|+++.|++++|.+++.
T Consensus 92 G~~fG~~~~~~~~~~~~~~~-~A~~~~~v~~i~~~~~~~l~~ 132 (232)
T 1zyb_A 92 PYLIEPQSLFGMNTNYASSY-VAHTEVHTVCISKAFVLSDLF 132 (232)
T ss_dssp SEEECGGGGSSSCCBCSSEE-EESSCEEEEEEEHHHHHHTGG
T ss_pred CCeeeehHHhCCCCCCceEE-EEccceEEEEEEHHHHHHHhc
Confidence 99999999999887 88999 789999999999999999875
No 32
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.83 E-value=1.3e-20 Score=131.93 Aligned_cols=107 Identities=13% Similarity=0.220 Sum_probs=94.9
Q ss_pred HHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc-C---ceeE--EecCCCeeee
Q psy7149 58 DFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-D---GRSQ--MLQVGDSFGI 131 (167)
Q Consensus 58 ~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~-~---~~~~--~l~~Gd~FGe 131 (167)
++|+++|+|+.|+++++..|+..+..+.| ++|++|+++|++++.+|+|++|.|++... + ..+. .+++|++||+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLF-TEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCB-CTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEe-CCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecH
Confidence 46889999999999999999999999999 99999999999999999999999997642 2 2344 8999999999
Q ss_pred ccc---ccCCc------eeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 132 LPT---MEKLY------HEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 132 ~al---l~~~~------r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
.++ +.+.+ +++++ .|.++|+++.|++++|.+++.
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~-~A~~~~~~~~i~~~~~~~l~~ 127 (137)
T 1wgp_A 85 ELLTWALDPKSGSNLPSSTRTV-KALTEVEAFALIADELKFVAS 127 (137)
T ss_dssp HHHHHHHCSSCCSSSCBCSSEE-EESSCBEEEEEEHHHHHHHHH
T ss_pred HHHHHHhccccccccccceeEE-EEeEEEEEEEECHHHHHHHHH
Confidence 985 77774 56788 789999999999999999875
No 33
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.83 E-value=4.7e-20 Score=136.36 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=97.5
Q ss_pred HHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEE--cC---ceeEEecCCCeeeec
Q psy7149 58 DFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL--SD---GRSQMLQVGDSFGIL 132 (167)
Q Consensus 58 ~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~--~~---~~~~~l~~Gd~FGe~ 132 (167)
.+++.+|.|.+|+++++..++..+..+.| ++|++|+++|++++++|+|++|.|+++. .+ ..+..++||++|||.
T Consensus 7 ~l~~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 7 ALINHIRKFIFLTDEDAGTLSAFFQLKKV-RKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHTTCEEEEE-CTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHhCEEEEE-cCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 46788999999999999999999999999 9999999999999999999999999976 22 357788999999998
Q ss_pred -ccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 133 -PTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 133 -all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+++.+.|+++++ .|.++|+++.|++++|.+++.
T Consensus 86 ~~~~~~~~~~~~~-~a~~~~~v~~i~~~~~~~l~~ 119 (194)
T 3dn7_A 86 MAFQKQQPADFYI-QSVENCELLSITYTEQENLFE 119 (194)
T ss_dssp HHHHHTCBCSSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred HHHhcCCCCceEE-EEECCEEEEEEeHHHHHHHHH
Confidence 678888999999 799999999999999999875
No 34
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.82 E-value=3.9e-20 Score=139.65 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=101.7
Q ss_pred HHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc-----CceeEEecCCCee
Q psy7149 55 QLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-----DGRSQMLQVGDSF 129 (167)
Q Consensus 55 ~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~-----~~~~~~l~~Gd~F 129 (167)
.+.++|+++|+|++|+++++..++..+..+.| ++|++|+++|++++++|+|++|.|+++.. ...+..++||++|
T Consensus 6 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~ 84 (227)
T 3dkw_A 6 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNL-DKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTF 84 (227)
T ss_dssp SSHHHHTTSTTTSSSCHHHHHHHHTSCEEEEC-CTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEE
T ss_pred hHHHHHhcChhhcCCCHHHHHHHHhhCEEEEE-CCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEe
Confidence 35689999999999999999999999999999 99999999999999999999999999752 2367889999999
Q ss_pred eecccccCCc-eeeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 130 GILPTMEKLY-HEGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 130 Ge~all~~~~-r~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
|+.+++.+.+ +++++ .|.++|+++.|++++|.+++.+
T Consensus 85 G~~~~~~~~~~~~~~~-~a~~~~~v~~i~~~~~~~l~~~ 122 (227)
T 3dkw_A 85 AEAMMFMDTPNYVATA-QAVVPSQLFRFSNKAYLRQLQD 122 (227)
T ss_dssp SCTTTTTTCSBCSSCE-EESSCCEEEEEESHHHHHHHSS
T ss_pred eeHHhcCCCCCCceEE-EEcCcEEEEEEeHHHHHHHHHH
Confidence 9999999999 88899 7899999999999999998753
No 35
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.3e-19 Score=136.97 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=88.5
Q ss_pred HHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCee
Q psy7149 55 QLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSF 129 (167)
Q Consensus 55 ~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~F 129 (167)
.+...+++.++|.+|+++++..++..+..+.| ++|++|+++|++++++|+|++|.|+++.. + ..+..++||++|
T Consensus 8 ~~~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~ 86 (230)
T 3iwz_A 8 VVTTTVRNATPSLTLDAGTIERFLAHSHRRRY-PTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFV 86 (230)
T ss_dssp --------------CCHHHHHHHHTTSEEEEE-CTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEE
T ss_pred eehhhhhhcchhccCCHHHHHHHHHhCeEEEe-CCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEE
Confidence 45678999999999999999999999999999 99999999999999999999999999862 2 357889999999
Q ss_pred eecccccCC-ceeeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 130 GILPTMEKL-YHEGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 130 Ge~all~~~-~r~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
|+.+++.+. ++++++ .|.++|+++.|++++|.+++.+
T Consensus 87 G~~~~~~~~~~~~~~~-~a~~~~~v~~i~~~~~~~l~~~ 124 (230)
T 3iwz_A 87 GEMGLFIESDTREVIL-RTRTQCELAEISYERLQQLFQT 124 (230)
T ss_dssp SCGGGTSCCSBCCSEE-EESSCEEEEEEEHHHHHHHHHT
T ss_pred EehhhhcCCCCceeEE-EEcCcEEEEEEeHHHHHHHHHH
Confidence 999999775 788888 7899999999999999998753
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.82 E-value=3.3e-19 Score=139.43 Aligned_cols=128 Identities=13% Similarity=0.182 Sum_probs=110.4
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEE
Q psy7149 34 KDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV 113 (167)
Q Consensus 34 ~~~~r~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v 113 (167)
++.++.++...|. .....+..++.++++|..+++..+..++..+....| ++|++|+++|++++.+|+|++|.|++
T Consensus 137 ~~~~~~~~~~~~~----~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~ 211 (291)
T 2qcs_B 137 RDSYRRILMGSTL----RKRKMYEEFLSKVSILESLDKWERLTVADALEPVQF-EDGQKIVVQGEPGDEFFIILEGSAAV 211 (291)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEE-CTTCEEECTTSCCCEEEEEEEEEEEE
T ss_pred hHHHHHHHhhhHH----HHHHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEE-CCCCEEEeCCccCCEEEEEEeCEEEE
Confidence 3666776655442 222345678899999999999999999999999999 99999999999999999999999999
Q ss_pred EEc---C---ceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 114 ELS---D---GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 114 ~~~---~---~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
... + ..+..+++|++|||.+++.+.+|++++ +|.++|.++.|++++|.+++.+
T Consensus 212 ~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv-~a~~~~~~~~i~~~~f~~~l~~ 270 (291)
T 2qcs_B 212 LQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATV-VARGPLKCVKLDRPRFERVLGP 270 (291)
T ss_dssp EEECSTTSCEEEEEEECTTCEECSGGGTCCCCCSSEE-EEEEEEEEEEEEHHHHHHHHCC
T ss_pred EEecCCCCccEEEEEeCCCCEecHHHHcCCCCcceEE-EECCcEEEEEEcHHHHHHHhcc
Confidence 752 2 368889999999999999999999999 6889999999999999998863
No 37
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.82 E-value=9.7e-20 Score=136.84 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=97.6
Q ss_pred HHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEE--cC---ceeEEecCCCe--e
Q psy7149 57 LDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL--SD---GRSQMLQVGDS--F 129 (167)
Q Consensus 57 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~--~~---~~~~~l~~Gd~--F 129 (167)
+++|+++|+|.+|+++++..++..+..+.| ++|++|+++|++++++|+|++|.|+++. .+ ..+..++||++ |
T Consensus 2 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~ 80 (220)
T 3dv8_A 2 MSFENYFPLWNDLNTAQKKLISDNLITQHV-KKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLL 80 (220)
T ss_dssp ---CCSCGGGGTSCHHHHHHHHTTCEEEEE-CTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESG
T ss_pred cchHHhChhhhcCCHHHHHHHHhhCceEEe-CCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeeh
Confidence 367899999999999999999999999999 9999999999999999999999999976 22 35778899999 7
Q ss_pred eecccccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 130 GILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 130 Ge~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
|+.+++.+.|+++++ .|.++|+++.|++++|.+++.
T Consensus 81 g~~~~~~~~~~~~~~-~a~~~~~~~~i~~~~~~~l~~ 116 (220)
T 3dv8_A 81 SASCIMRSIQFEVTI-EAEKDTDLWIIPAEIYKGIMK 116 (220)
T ss_dssp GGGGGCTTCCCCCEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred hHHHHhCCCCCceEE-EEeeeeEEEEEEHHHHHHHHH
Confidence 999999999999999 789999999999999999874
No 38
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.80 E-value=5.2e-20 Score=150.50 Aligned_cols=128 Identities=13% Similarity=0.174 Sum_probs=112.2
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEE
Q psy7149 34 KDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV 113 (167)
Q Consensus 34 ~~~~r~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v 113 (167)
++.++.++.+.|.. ....+..++.++++|..|++.++..++..+....| ++|++|+++|++++++|||.+|.|++
T Consensus 228 ~~~f~~ll~~~~~~----~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~-~~ge~I~~eGd~~~~~yiI~~G~v~v 302 (381)
T 4din_B 228 RDSYRRILMGSTLR----KRKMYEEFLSKVSILESLEKWERLTVADALEPVQF-EDGEKIVVQGEPGDDFYIITEGTASV 302 (381)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCB-CSSCBSSCTTSBCCEEEEEEESCEEE
T ss_pred hHHHHHhhhhhhHH----HHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccC-CCCCEEEeCCCcCCEEEEEEeCEEEE
Confidence 47777777655522 22445678999999999999999999999999999 99999999999999999999999999
Q ss_pred EEc---C---ceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 114 ELS---D---GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 114 ~~~---~---~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
+.. + ..+..+++|++|||.+++.+.||.+++ .|.++|.++.|++++|.+++.+
T Consensus 303 ~~~~~~~~~~~~v~~l~~Gd~fGe~all~~~~r~~tv-~A~~~~~ll~i~~~~f~~ll~~ 361 (381)
T 4din_B 303 LQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATV-VARGPLKCVKLDRPRFERVLGP 361 (381)
T ss_dssp ECCSSSSSCCCEEEEECTTCEECTTGGGSCCBCSSEE-EESSCBEEEEEEHHHHHHHHCC
T ss_pred EEecCCCCceEEEEEeCCCCEechHHHhCCCCceeEE-EEcCCEEEEEEeHHHHHHHHhh
Confidence 863 1 257889999999999999999999999 7899999999999999999863
No 39
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.80 E-value=1.1e-19 Score=150.21 Aligned_cols=128 Identities=15% Similarity=0.232 Sum_probs=109.6
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEE
Q psy7149 34 KDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV 113 (167)
Q Consensus 34 ~~~~r~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v 113 (167)
++.++.++.+.|..+. ..+..++.++++|..|++.++..++..+..+.| ++|++|+++|++++++|||++|.|++
T Consensus 247 r~~f~~ll~~~~~~~~----~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~-~~Ge~I~~eGd~~~~~yiI~sG~v~v 321 (416)
T 3tnp_B 247 RVTFRRIIVKNNAKKR----KMYESFIESLPFLKSLEVSERLKVVDVIGTKVY-NDGEQIIAQGDLADSFFIVESGEVKI 321 (416)
T ss_dssp HHHHHHHHHHHHHHHS----SSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEE-CTTCEEECTTSCCCEEEEEEEEEEEE
T ss_pred ehhhhhhhhcchhHHH----HHHHHHHhhchHhhcCCHHHHHHHHhhceEEEE-CCCCEEEeCCCcCCEEEEEEeCEEEE
Confidence 4677777665442111 124457889999999999999999999999999 99999999999999999999999999
Q ss_pred EEcC-----------ceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 114 ELSD-----------GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 114 ~~~~-----------~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
+... ..+..+++|++|||.+++.+.+|.+++ .|.++|.++.|++++|.+++.+
T Consensus 322 ~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~all~~~~r~~tv-~A~~~~~ll~I~~~~f~~ll~~ 385 (416)
T 3tnp_B 322 TMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASA-HAIGTVKCLAMDVQAFERLLGP 385 (416)
T ss_dssp ECC------------CEEEEECTTCEESGGGGTCCSCCSSEE-EEEEEEEEEEEEHHHHHHHHCC
T ss_pred EEecCCcccccCCceeEEEEeCCCCEecHHHHhCCCCceeEE-EEcCCeEEEEEEHHHHHHHhcc
Confidence 7521 357889999999999999999999999 6889999999999999999863
No 40
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.79 E-value=3e-19 Score=135.46 Aligned_cols=103 Identities=12% Similarity=0.147 Sum_probs=95.3
Q ss_pred cChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc-----CceeEEecCCCeeeeccccc
Q psy7149 62 HLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-----DGRSQMLQVGDSFGILPTME 136 (167)
Q Consensus 62 ~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~-----~~~~~~l~~Gd~FGe~all~ 136 (167)
.+|+|+.|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++.. ...+..++||++||+.+++.
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~ 92 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPC-KKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA 92 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEE-CTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEE-CCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence 6899999999999999999999999 99999999999999999999999999752 24678899999999999999
Q ss_pred CCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 137 KLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 137 ~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+.++++++ .|.++|+++.|++++|.+++.
T Consensus 93 ~~~~~~~~-~A~~~~~v~~i~~~~~~~l~~ 121 (232)
T 2gau_A 93 EETCSSTA-IAVENSKVLAIPVEAIEALLK 121 (232)
T ss_dssp TSCCSSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred CCCcceEE-EEecceEEEEEEHHHHHHHHH
Confidence 99999999 789999999999999999874
No 41
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.77 E-value=3.6e-18 Score=127.34 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=88.6
Q ss_pred hhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeeeecccccCC
Q psy7149 64 KAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFGILPTMEKL 138 (167)
Q Consensus 64 ~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe~all~~~ 138 (167)
++++.++++++..++..+..+.| ++|++|+++|++++++|+|++|.|+++.. + ..+..++||++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~ 80 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKY-PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG 80 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEE-CTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTT
T ss_pred cCCCcCCHHHHHHHHHhcEEEEe-CCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCC
Confidence 56778999999999999999999 99999999999999999999999999762 2 357789999999999999887
Q ss_pred -ceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 139 -YHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 139 -~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
++++++ .|.++|+++.|++++|.+++.
T Consensus 81 ~~~~~~~-~a~~~~~v~~i~~~~~~~l~~ 108 (210)
T 3ryp_A 81 QERSAWV-RAKTACEVAEISYKKFRQLIQ 108 (210)
T ss_dssp CBCSSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred CCceEEE-EECCcEEEEEEcHHHHHHHHH
Confidence 888999 789999999999999999874
No 42
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.75 E-value=1.4e-17 Score=123.83 Aligned_cols=96 Identities=20% Similarity=0.259 Sum_probs=86.3
Q ss_pred CCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeeeecccccCC----c
Q psy7149 69 MTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFGILPTMEKL----Y 139 (167)
Q Consensus 69 L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe~all~~~----~ 139 (167)
||++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++.. + ..+..++||++||+.+++.+. +
T Consensus 1 l~~~~l~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~ 79 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRY-TAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQE 79 (207)
T ss_dssp CCHHHHHHHHHSSEEEEE-CTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CB
T ss_pred CCHHHHHHHHhhcceEEE-CCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCC
Confidence 689999999999999999 99999999999999999999999999752 2 367889999999999999888 8
Q ss_pred eeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 140 HEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 140 r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+++++ .|.++|+++.|++++|.+++.
T Consensus 80 ~~~~~-~A~~~~~v~~i~~~~~~~l~~ 105 (207)
T 2oz6_A 80 RSAWV-RAKVECEVAEISYAKFRELSQ 105 (207)
T ss_dssp CCSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred cceEE-EECCcEEEEEECHHHHHHHHH
Confidence 89999 789999999999999999874
No 43
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.73 E-value=2.2e-17 Score=127.86 Aligned_cols=105 Identities=13% Similarity=0.150 Sum_probs=86.9
Q ss_pred hhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeeeeccc
Q psy7149 60 TQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFGILPT 134 (167)
Q Consensus 60 L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe~al 134 (167)
+....++..|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++.. + ..+..++||++||+.++
T Consensus 48 i~~~~~~~~l~~~~l~~l~~~~~~~~~-~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~ 126 (260)
T 3kcc_A 48 IGSMVLGKPQTDPTLEWFLSHCHIHKY-PSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL 126 (260)
T ss_dssp -----------CHHHHHHHTTSEEEEE-CTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTT
T ss_pred HHHHHHcCCCCHHHHHHHHhhCEEEEE-CCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHH
Confidence 333334466999999999999999999 99999999999999999999999999862 2 35788999999999999
Q ss_pred ccCC-ceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 135 MEKL-YHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 135 l~~~-~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+.+. ++++++ .|.++|+++.|++++|.+++.
T Consensus 127 ~~~~~~~~~~~-~A~~~~~l~~i~~~~~~~l~~ 158 (260)
T 3kcc_A 127 FEEGQERSAWV-RAKTACEVAEISYKKFRQLIQ 158 (260)
T ss_dssp TSTTCBCCSEE-EESSCEEEEEEEHHHHHHHHH
T ss_pred hCCCCCCceEE-EECCCeEEEEEcHHHHHHHHH
Confidence 9888 889999 789999999999999999874
No 44
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.73 E-value=6.9e-18 Score=127.07 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=90.6
Q ss_pred HHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEE-cC---ceeEEecCCCeeeecc
Q psy7149 58 DFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL-SD---GRSQMLQVGDSFGILP 133 (167)
Q Consensus 58 ~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~-~~---~~~~~l~~Gd~FGe~a 133 (167)
.+|+++|+|+.|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++. .+ ..+..++||++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~-- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRY-SKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEE-CTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES--
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEe-CCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC--
Confidence 36789999999999999999999999999 9999999999999999999999999953 22 35788999999999
Q ss_pred cccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 134 TMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 134 ll~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
++++++ .|.++|+++.||+++|.+++.
T Consensus 81 -----~~~~~~-~A~~~~~v~~i~~~~~~~l~~ 107 (220)
T 2fmy_A 81 -----HTRAFI-QAMEDTTILYTDIRNFQNIVV 107 (220)
T ss_dssp -----CSSSEE-EESSSEEEEEEEHHHHHHHHH
T ss_pred -----ccceEE-EEcCcEEEEEEeHHHHHHHHH
Confidence 778888 689999999999999999874
No 45
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.72 E-value=1.1e-17 Score=125.76 Aligned_cols=103 Identities=10% Similarity=0.071 Sum_probs=85.2
Q ss_pred cChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeeeeccccc
Q psy7149 62 HLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFGILPTME 136 (167)
Q Consensus 62 ~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe~all~ 136 (167)
.-|+|+..++.+...++..+..+.| ++|++|+++|++++.+|+|++|.|+++.. + ..+..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~ 81 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVF-RKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFS 81 (213)
T ss_dssp ----------CCGGGGGGGSEEEEE-CTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTS
T ss_pred ccccchhhccCCHHHHhcccEEEEE-CCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhc
Confidence 4588999999999999999999999 99999999999999999999999999762 2 3577899999999999998
Q ss_pred CC-ceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 137 KL-YHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 137 ~~-~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+. ++.+++ .|.++|+++.|++++|.+++.
T Consensus 82 ~~~~~~~~~-~A~~~~~v~~i~~~~~~~l~~ 111 (213)
T 1o5l_A 82 SEPRFPVNV-VAGENSKILSIPKEVFLDLLM 111 (213)
T ss_dssp SSCBCSSEE-EESSSEEEEEEEHHHHHHHHH
T ss_pred CCCCceEEE-EEccceEEEEEeHHHHHHHHH
Confidence 76 888999 789999999999999998874
No 46
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.71 E-value=1.2e-17 Score=126.03 Aligned_cols=99 Identities=11% Similarity=0.119 Sum_probs=89.2
Q ss_pred HhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEE-cC---ceeEEecCCCeeeeccc
Q psy7149 59 FTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL-SD---GRSQMLQVGDSFGILPT 134 (167)
Q Consensus 59 ~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~-~~---~~~~~l~~Gd~FGe~al 134 (167)
+|+++|+|+.|+++++..++..+..+.| ++|++|+++|++++++|+|++|.|+++. .+ ..+..++||++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG---- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIH-AKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC---- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEE-CTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEE-CCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec----
Confidence 4688999999999999999999999999 9999999999999999999999999953 22 3578899999999
Q ss_pred ccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 135 MEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 135 l~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
.++++++ .|.++|+++.|++++|.+++.
T Consensus 76 ---~~~~~~~-~A~~~~~v~~i~~~~~~~l~~ 103 (222)
T 1ft9_A 76 ---MHSGCLV-EATERTEVRFADIRTFEQKLQ 103 (222)
T ss_dssp ---SCSSCEE-EESSCEEEEEECHHHHHHHHH
T ss_pred ---CCCCEEE-EEccceEEEEEeHHHHHHHHH
Confidence 6788898 789999999999999999874
No 47
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.68 E-value=7.9e-17 Score=123.68 Aligned_cols=102 Identities=10% Similarity=0.087 Sum_probs=91.0
Q ss_pred hhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeeeeccc
Q psy7149 60 TQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFGILPT 134 (167)
Q Consensus 60 L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe~al 134 (167)
+....+|..|+++++..++..+..+.| ++|++|+++|++++.+|+|++|.|+++.. + ..+..++||++||+ +
T Consensus 11 ~~~~~p~~~l~~~~l~~l~~~~~~~~~-~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 11 CGAIIPDNFFPIEKLRNYTQMGLIRDF-AKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCCSSSBSCSCCGGGGGGGGGSEEEEE-CTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred hhhccchhhCCHHHHHHHHhhCeEEEE-CCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence 455556699999999999999999999 99999999999999999999999999762 2 35788999999999 7
Q ss_pred ccCCceeeEEEEecCceEEEEEeHHHHHHHhc
Q psy7149 135 MEKLYHEGVMRTRCDDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 135 l~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~ 166 (167)
+.+. +++++ .|.++|+++.|++++|.+++.
T Consensus 88 l~~~-~~~~~-~A~~~~~v~~i~~~~~~~l~~ 117 (250)
T 3e6c_C 88 YPTG-NNIYA-TAMEPTRTCWFSEKSLRTVFR 117 (250)
T ss_dssp SCCS-CCEEE-EESSSEEEEEECHHHHHHHHH
T ss_pred cCCC-CceEE-EEcccEEEEEEcHHHHHHHHH
Confidence 7777 88898 789999999999999999874
No 48
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.67 E-value=3.8e-18 Score=138.00 Aligned_cols=108 Identities=17% Similarity=0.243 Sum_probs=1.4
Q ss_pred HHHHhhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccc
Q psy7149 56 LLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTM 135 (167)
Q Consensus 56 i~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all 135 (167)
..+.+++.|+|++++++.++.++..++.+.+ ++|++|+++||+++++|+|.+|.|++...+ ...+++|++|||.+++
T Consensus 226 ~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~-~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~l~~G~~fGe~~~l 302 (355)
T 3beh_A 226 NWQLVAAVPLFQKLGPAVLVEIVRALRARTV-PAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALI 302 (355)
T ss_dssp HHC-----------------------------------------------------------------------------
T ss_pred cchhhhcccccccCCHHHHHHHHHhceEEEE-CCCCEEEeCCCcCceEEEEEeeEEEEEECC--eeEECCCCEEeehHHh
Confidence 3457899999999999999999999999999 999999999999999999999999998755 4678999999999999
Q ss_pred cCCceeeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 136 EKLYHEGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 136 ~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
.+.++++++ .|.++|+++.+++++|.+++++
T Consensus 303 ~~~~~~~~~-~A~~~~~l~~i~~~~f~~ll~~ 333 (355)
T 3beh_A 303 SGEPRSATV-SAATTVSLLSLHSADFQMLCSS 333 (355)
T ss_dssp --------------------------------
T ss_pred CCCCcceEE-EECccEEEEEEeHHHHHHHHHH
Confidence 999999999 7899999999999999998763
No 49
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.63 E-value=2.1e-15 Score=115.04 Aligned_cols=97 Identities=7% Similarity=-0.017 Sum_probs=80.7
Q ss_pred hcCCHHHHHHHhh--hcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeeeecccccCCc
Q psy7149 67 TNMTLAVRKALCG--VMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFGILPTMEKLY 139 (167)
Q Consensus 67 ~~L~~~~l~~l~~--~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe~all~~~~ 139 (167)
++++++++..+.. .+..+.| ++|++|+++|++++.+|+|++|.|+++.. + ..+..+ ||++||+.+++.+.+
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~-~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~ 79 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQF-HKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTET 79 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEE-ETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCC
T ss_pred CCCCHHHHHHHHHhCCceEEEE-CCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCC
Confidence 4688999999885 5888999 99999999999999999999999999762 2 346677 999999999998875
Q ss_pred e--eeEEEEec-CceEEEEEeHHHHHHHhc
Q psy7149 140 H--EGVMRTRC-DDCQFVCITQTDYYRIQH 166 (167)
Q Consensus 140 r--~~tv~~a~-~~~~ll~i~~~~f~~ll~ 166 (167)
+ ..++ .|. ++|+++.|++++|.+++.
T Consensus 80 ~~~~~~~-~a~~~~~~v~~i~~~~~~~l~~ 108 (238)
T 2bgc_A 80 SVGYYNL-EVISEQATAYVIKINELKELLS 108 (238)
T ss_dssp BSCCCEE-EECSSEEEEEEEEHHHHHHHHH
T ss_pred cCcceeE-EEEEcceEEEEEeHHHHHHHHH
Confidence 3 4455 445 589999999999999874
No 50
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.63 E-value=2.7e-15 Score=114.85 Aligned_cols=95 Identities=8% Similarity=0.102 Sum_probs=84.5
Q ss_pred HHHHHHHhhhcc---eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeeeecccccCCc--e
Q psy7149 71 LAVRKALCGVMV---FAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFGILPTMEKLY--H 140 (167)
Q Consensus 71 ~~~l~~l~~~~~---~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe~all~~~~--r 140 (167)
++.++.|+.... .+.| ++|++|+++|++++.+|+|++|.|+++.. + ..+..++||++||+.+++.+.+ +
T Consensus 30 ~~~l~~L~~~~~~~~~~~~-~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~ 108 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETF-ERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDR 108 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEE-CTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBC
T ss_pred HHHHHHHhhccchheeEEE-CCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcc
Confidence 788899999998 9999 99999999999999999999999999762 2 3678899999999999998876 4
Q ss_pred eeEEEEecCceEEEEEeHHHHHHHhcC
Q psy7149 141 EGVMRTRCDDCQFVCITQTDYYRIQHQ 167 (167)
Q Consensus 141 ~~tv~~a~~~~~ll~i~~~~f~~ll~~ 167 (167)
.+++ .|.++|+++.|++++|.+++.+
T Consensus 109 ~~~~-~A~~~~~v~~i~~~~~~~l~~~ 134 (243)
T 3la7_A 109 FYHA-VAFTPVELLSAPIEQVEQALKE 134 (243)
T ss_dssp CEEE-EESSSEEEEEEEHHHHHHHHTT
T ss_pred eEEE-EEccceEEEEEcHHHHHHHHHH
Confidence 5788 6899999999999999998753
No 51
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.56 E-value=1.2e-14 Score=107.50 Aligned_cols=76 Identities=16% Similarity=0.074 Sum_probs=68.4
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---ceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeH
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQ 158 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~ 158 (167)
+.| ++|++|+++|++++.+|+|++|.|+++.. + ..+..++||++||+ +++.+.++++++ .|.++|+++.||+
T Consensus 2 ~~~-~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~-~A~~~~~v~~i~~ 78 (195)
T 3b02_A 2 KRF-ARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTA-EAMTEAVVQGLEP 78 (195)
T ss_dssp EEE-CTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEE-EESSSEEEEEECG
T ss_pred eEc-CCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEE-EECCcEEEEEEcH
Confidence 567 99999999999999999999999999762 2 35788999999999 999999999999 7899999999999
Q ss_pred HHHH
Q psy7149 159 TDYY 162 (167)
Q Consensus 159 ~~f~ 162 (167)
++|.
T Consensus 79 ~~~~ 82 (195)
T 3b02_A 79 RAMD 82 (195)
T ss_dssp GGCC
T ss_pred HHcC
Confidence 8874
No 52
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.42 E-value=1.3e-13 Score=102.32 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=67.6
Q ss_pred hhhcceeEEccCCcEEEecCCCC--CeEEEEEEeEEEEEEc--C---ceeEEecCCCeeeecccccCCceeeEEEEecCc
Q psy7149 78 CGVMVFAVVEKAGTIVMNDGEEL--DSWSVVINGCVEVELS--D---GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDD 150 (167)
Q Consensus 78 ~~~~~~~~~~~~ge~I~~~Gd~~--~~lyiI~~G~v~v~~~--~---~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~ 150 (167)
+..+..+.| ++|++|+++|+++ +++|+|++|.|+++.. + ..+..++||++||+ +++.+.++++++ .|.++
T Consensus 2 ~~~~~~~~~-~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~-~A~~~ 78 (202)
T 2zcw_A 2 TQVRETVSF-KAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFA-EAATD 78 (202)
T ss_dssp ----CCEEE-CTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEE-EESSC
T ss_pred CccceEEEE-CCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEE-EEccc
Confidence 456778889 9999999999999 9999999999999762 2 35778999999999 888888999999 78999
Q ss_pred eEEEEEeHHHH
Q psy7149 151 CQFVCITQTDY 161 (167)
Q Consensus 151 ~~ll~i~~~~f 161 (167)
|+++.| +++|
T Consensus 79 ~~v~~i-~~~~ 88 (202)
T 2zcw_A 79 VRLEPL-PENP 88 (202)
T ss_dssp EEEEEC-CSSC
T ss_pred EEEEEE-hHhc
Confidence 999999 7655
No 53
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=94.83 E-value=0.3 Score=36.34 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=49.7
Q ss_pred ceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 82 VFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 82 ~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..-.+ .+|+.+-..-.+.+.+++|++|++++..++. ...+++||++=- =.+.++ .+ .|.++|.++.+
T Consensus 40 ~~~~~-~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~~-~~~l~~Gd~~~~---p~~~~H--~~-~a~~~~~~l~i 106 (227)
T 3rns_A 40 SLFSL-AKDEEITAEAMLGNRYYYCFNGNGEIFIENN-KKTISNGDFLEI---TANHNY--SI-EARDNLKLIEI 106 (227)
T ss_dssp EEEEE-CTTCEEEECSCSSCEEEEEEESEEEEEESSC-EEEEETTEEEEE---CSSCCE--EE-EESSSEEEEEE
T ss_pred EEEEE-CCCCccCccccCCCEEEEEEeCEEEEEECCE-EEEECCCCEEEE---CCCCCE--EE-EECCCcEEEEE
Confidence 34455 8999997777789999999999999988654 467999987621 134444 34 46788888876
No 54
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=94.39 E-value=0.29 Score=32.40 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=43.3
Q ss_pred eEEccCCcEEEecCCC-CCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 84 AVVEKAGTIVMNDGEE-LDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~-~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+ ++|..+-..-.+ ...+++|++|++.+...++....+++||++= +-.+.++.... ...+++.++.+
T Consensus 44 ~~~-~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~---i~~~~~H~~~n-~~~~~~~~l~v 112 (125)
T 3h8u_A 44 WHA-HPGQEIASHVHPHGQDTWTVISGEAEYHQGNGIVTHLKAGDIAI---AKPGQVHGAMN-SGPEPFIFVSV 112 (125)
T ss_dssp EEE-CTTCEECCC-CTTCEEEEEEEECEEEEECSTTCEEEEETTEEEE---ECTTCCCEEEE-CSSSCEEEEEE
T ss_pred EEE-CCCCcCCcccCCCCeEEEEEEEeEEEEEECCCeEEEeCCCCEEE---ECCCCEEEeEe-CCCCCEEEEEE
Confidence 445 788776444344 3678889999999987555677899999862 22455554443 23345555554
No 55
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=94.21 E-value=0.13 Score=37.08 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=43.3
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
...+ ++|...-.--.....+++|++|++.+..+++....|++||.+ -- .+.++.... ...+.|.++.+
T Consensus 83 ~v~l-~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~~~L~~GDsi-~~---~g~~H~~~N-~g~~~ar~l~V 150 (172)
T 3es1_A 83 VVDM-LPGKESPMHRTNSIDYGIVLEGEIELELDDGAKRTVRQGGII-VQ---RGTNHLWRN-TTDKPCRIAFI 150 (172)
T ss_dssp EEEE-CTTCBCCCBCCSEEEEEEEEESCEEEECGGGCEEEECTTCEE-EE---CSCCBEEEC-CSSSCEEEEEE
T ss_pred EEEE-CCCCCCCCeecCceEEEEEEeCEEEEEECCCeEEEECCCCEE-Ee---CCCcEEEEe-CCCCCEEEEEE
Confidence 3445 676643222234456789999999998875667789999998 32 355554443 23455666654
No 56
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=93.83 E-value=0.83 Score=29.95 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=43.1
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEE
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVC 155 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~ 155 (167)
..+ ++|..+-..-.+...+++|++|++.+..++. ...+++||.+=- =.+.++. + .+.+++.++.
T Consensus 41 ~~l-~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~i---p~~~~H~--~-~~~~~~~~~~ 104 (114)
T 3fjs_A 41 MVL-PAGKQVGSHSVAGPSTIQCLEGEVEIGVDGA-QRRLHQGDLLYL---GAGAAHD--V-NAITNTSLLV 104 (114)
T ss_dssp EEE-CTTCEEEEECCSSCEEEEEEESCEEEEETTE-EEEECTTEEEEE---CTTCCEE--E-EESSSEEEEE
T ss_pred EEE-CCCCccCceeCCCcEEEEEEECEEEEEECCE-EEEECCCCEEEE---CCCCcEE--E-EeCCCcEEEE
Confidence 344 7888776555567799999999999988665 578999988732 2344443 3 3446655443
No 57
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=93.79 E-value=0.15 Score=32.45 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=41.7
Q ss_pred cCCcEEEecCCCCC-eEEEEEEeEEEEEEcCc-eeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEe
Q psy7149 88 KAGTIVMNDGEELD-SWSVVINGCVEVELSDG-RSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~-~lyiI~~G~v~v~~~~~-~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~ 157 (167)
++|...-..-.+.. .+++|++|++.+..+++ ....+++||.+=.- .+.++.... ...+++.++.+.
T Consensus 26 ~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~p---~~~~H~~~N-~g~~~~~~l~v~ 93 (97)
T 2fqp_A 26 PPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRP---EGVEHNVIN-PSDTEFVFVEIE 93 (97)
T ss_dssp CTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEEC---TTCEEEEEC-CSSSCEEEEEEE
T ss_pred CCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEeC---CCCcccCEe-CCCCcEEEEEEE
Confidence 66665422222344 49999999999988776 67889999988332 344554433 233456666653
No 58
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=93.31 E-value=0.72 Score=29.89 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=40.6
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
++|..+-....+...+++|++|++.+..++. ...+++||++= +-.+.++.... .+++.++.+
T Consensus 46 ~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~~-~~~l~~Gd~i~---i~~~~~H~~~~---~~~~~~~~i 107 (114)
T 2ozj_A 46 ADGESVSEEEYFGDTLYLILQGEAVITFDDQ-KIDLVPEDVLM---VPAHKIHAIAG---KGRFKMLQI 107 (114)
T ss_dssp ETTSSCCCBCCSSCEEEEEEEEEEEEEETTE-EEEECTTCEEE---ECTTCCBEEEE---EEEEEEEEE
T ss_pred CCCCccccEECCCCeEEEEEeCEEEEEECCE-EEEecCCCEEE---ECCCCcEEEEe---CCCcEEEEE
Confidence 6666554444567789999999999987654 56799999872 22445554433 345655544
No 59
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=92.98 E-value=0.84 Score=31.42 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=42.5
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+ ++|..+-..-.+...+++|++|++.+..++.....+.+||++=- -.+.++.... ...+++.++.+
T Consensus 53 ~~~-~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~i---p~~~~H~~~n-~~~~~~~~l~v 120 (147)
T 2f4p_A 53 VVF-EPGARTHWHSHPGGQILIVTRGKGFYQERGKPARILKKGDVVEI---PPNVVHWHGA-APDEELVHIGI 120 (147)
T ss_dssp EEE-CTTCEECSEECTTCEEEEEEEEEEEEEETTSCCEEEETTCEEEE---CTTCCEEEEE-BTTBCEEEEEE
T ss_pred EEE-CCCCccCceECCCceEEEEEeCEEEEEECCEEEEEECCCCEEEE---CCCCcEEeEe-CCCCCEEEEEE
Confidence 344 67776633333457899999999999887664468999998832 2344554333 23344555544
No 60
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=92.89 E-value=0.49 Score=31.60 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=41.9
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+ .+|..+-.. ...+.+++|++|++.+..+ +....+++||++=-- .+.++.... . .+.+.++.+
T Consensus 45 ~~~-~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~-g~~~~l~~GD~v~ip---~g~~H~~~~-~-~~~~~~l~v 109 (119)
T 3lwc_A 45 GRY-APGQSLTET-MAVDDVMIVLEGRLSVSTD-GETVTAGPGEIVYMP---KGETVTIRS-H-EEGALTAYV 109 (119)
T ss_dssp EEE-CTTCEEEEE-CSSEEEEEEEEEEEEEEET-TEEEEECTTCEEEEC---TTCEEEEEE-E-EEEEEEEEE
T ss_pred EEE-CCCCCcCcc-CCCCEEEEEEeCEEEEEEC-CEEEEECCCCEEEEC---CCCEEEEEc-C-CCCeEEEEE
Confidence 344 778765433 3788999999999999885 456789999998332 344444333 2 244555443
No 61
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=92.50 E-value=0.63 Score=30.21 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=34.1
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCee
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSF 129 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~F 129 (167)
.... .+|..-.. .+..-+++|++|++.+..+++....+++||.+
T Consensus 35 ~~~~-~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g~~~~l~~GD~i 78 (101)
T 1o5u_A 35 IWEK-EVSEFDWY--YDTNETCYILEGKVEVTTEDGKKYVIEKGDLV 78 (101)
T ss_dssp EEEE-CSEEEEEE--CSSCEEEEEEEEEEEEEETTCCEEEEETTCEE
T ss_pred EEEe-CCCccccc--CCceEEEEEEeCEEEEEECCCCEEEECCCCEE
Confidence 4455 77775544 45678999999999998875667889999988
No 62
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=91.92 E-value=1.5 Score=30.97 Aligned_cols=67 Identities=24% Similarity=0.259 Sum_probs=43.3
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEe-cCceEEEEE
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTR-CDDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a-~~~~~ll~i 156 (167)
..+ .+|..+-..-.+...+++|++|++.+..++. ...+++||++= +-.+.++.... .. .+++.++.+
T Consensus 61 ~~l-~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~---ip~~~~H~~~n-~~~~~~~~~l~i 128 (167)
T 3ibm_A 61 FEV-EPGGYTTLERHEHTHVVMVVRGHAEVVLDDR-VEPLTPLDCVY---IAPHAWHQIHA-TGANEPLGFLCI 128 (167)
T ss_dssp EEE-CTTCBCCCBBCSSCEEEEEEESEEEEEETTE-EEEECTTCEEE---ECTTCCEEEEE-ESSSCCEEEEEE
T ss_pred EEE-CCCCCCCCccCCCcEEEEEEeCEEEEEECCE-EEEECCCCEEE---ECCCCcEEEEe-CCCCCCEEEEEE
Confidence 344 6776553333457889999999999987665 67789999872 22355554444 23 445666555
No 63
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=91.89 E-value=0.64 Score=33.36 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=36.5
Q ss_pred CCCCeEEEEEEeEEEEEEcCc---eeEEecCCCeeeecccccCCceeeEEEE-ecCceEEEEE
Q psy7149 98 EELDSWSVVINGCVEVELSDG---RSQMLQVGDSFGILPTMEKLYHEGVMRT-RCDDCQFVCI 156 (167)
Q Consensus 98 d~~~~lyiI~~G~v~v~~~~~---~~~~l~~Gd~FGe~all~~~~r~~tv~~-a~~~~~ll~i 156 (167)
.++..+++|++|++.+..+++ ....+++||++=-- .+.++.... . ..++|.++.+
T Consensus 138 h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~~---~~~~H~~~n-~~~~~~~~~l~v 196 (198)
T 2bnm_A 138 HAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVE---EHVPHAFTA-AKGTGSAKLIAV 196 (198)
T ss_dssp CSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEEC---TTCCEEEEE-STTSCCEEEEEE
T ss_pred CCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEeC---CCCceEEEe-cCCCCCeEEEEE
Confidence 345688999999999988663 67789999998322 344554333 2 2256776655
No 64
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=91.76 E-value=0.76 Score=29.92 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=38.8
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
.+|..+-..-.....+++|++|++.+..++.....+++||++=- =.+.++.... ...+++.++.+
T Consensus 35 ~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~i---p~~~~H~~~~-~~~~~~~~l~i 99 (117)
T 2b8m_A 35 PRGEQMPKHYSNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYV---PFNVKMLIQN-INSDILEFFVV 99 (117)
T ss_dssp ETTCBCCCEECSSCEEEEEEESEEEEEETTSCCEEEETTCEEEE---CTTCEEEEEC-CSSSEEEEEEE
T ss_pred CCCCcCCCEeCCCcEEEEEEeCEEEEEECCEEEEEeCCCCEEEE---CCCCcEEeEc-CCCCCEEEEEE
Confidence 56654422223456788999999999887665448999998722 2344444333 22233455555
No 65
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=91.39 E-value=1.5 Score=27.79 Aligned_cols=67 Identities=24% Similarity=0.239 Sum_probs=41.2
Q ss_pred eEEccCCcEEEec--CCC-CCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 84 AVVEKAGTIVMND--GEE-LDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~ge~I~~~--Gd~-~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+ .+|..+-.. -.+ ...+++|++|++.+..++. ...+++||++=- -.+.++.... ...+++.++.+
T Consensus 26 ~~~-~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~i---~~~~~H~~~~-~~~~~~~~~~v 95 (113)
T 2gu9_A 26 MVI-APGDREGGPDNRHRGADQWLFVVDGAGEAIVDGH-TQALQAGSLIAI---ERGQAHEIRN-TGDTPLKTVNF 95 (113)
T ss_dssp EEE-CTTCEEECCCSSSCCCEEEEEEEECCEEEEETTE-EEEECTTEEEEE---CTTCCEEEEC-CSSSCEEEEEE
T ss_pred EEE-CCCCccCCcccccCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEEE---CCCCcEEeEc-CCCCCEEEEEE
Confidence 345 778766443 334 6789999999999987654 567899988732 1344443332 22334555544
No 66
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=91.29 E-value=0.86 Score=31.63 Aligned_cols=59 Identities=7% Similarity=0.084 Sum_probs=40.2
Q ss_pred EecCCCCCeEEEEEEeEEEEEEcC-------ceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeH
Q psy7149 94 MNDGEELDSWSVVINGCVEVELSD-------GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQ 158 (167)
Q Consensus 94 ~~~Gd~~~~lyiI~~G~v~v~~~~-------~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~ 158 (167)
++..+..+-+|+|++|++.+.-.+ .....++||++| .+..+.....+ |.++|.++.|..
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~y----vVPkGveH~p~--a~~e~~vLLiEp 109 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVY----NVPAECWFYSI--TQKDTKMMYVQD 109 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCE----EECTTCEEEEE--ECTTCEEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEE----EeCCCccCccc--CCCceEEEEEEe
Confidence 455667899999999999995431 224567998877 44444444343 568899888754
No 67
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=91.22 E-value=1.8 Score=32.01 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=45.5
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEe-cCceEEEEE
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTR-CDDCQFVCI 156 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a-~~~~~ll~i 156 (167)
...+ ++|..+-..-.+...++++++|++.+..++. ...+++||.+=- =.+.++ .+ .+ .+++.++.+
T Consensus 157 ~~~~-~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~g~-~~~l~~Gd~i~i---p~~~~H--~~-~~~~~~~~~ll~ 223 (227)
T 3rns_A 157 IMSF-WKGESLDPHKAPGDALVTVLDGEGKYYVDGK-PFIVKKGESAVL---PANIPH--AV-EAETENFKMLLI 223 (227)
T ss_dssp EEEE-CTTCEEEEECCSSEEEEEEEEEEEEEEETTE-EEEEETTEEEEE---CTTSCE--EE-ECCSSCEEEEEE
T ss_pred EEEE-CCCCccCCEECCCcEEEEEEeEEEEEEECCE-EEEECCCCEEEE---CCCCcE--EE-EeCCCCEEEEEE
Confidence 3455 8888876555567789999999999987654 577899998722 134444 33 45 677776654
No 68
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=91.18 E-value=1.7 Score=26.95 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=41.3
Q ss_pred eEEccCCcEEEecCCC-CCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 84 AVVEKAGTIVMNDGEE-LDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~-~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+ ++|..+-..-.+ ...+++|++|++.+..++ ....+++||++=- =.+.++.... ...+++.++.+
T Consensus 33 ~~~-~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~-~~~~l~~Gd~~~i---p~~~~H~~~~-~~~~~~~~~~v 100 (105)
T 1v70_A 33 YAL-LPGQAQKVHVHEGSDKVYYALEGEVVVRVGE-EEALLAPGMAAFA---PAGAPHGVRN-ESASPALLLVV 100 (105)
T ss_dssp EEE-CTTCEEEEECCSSCEEEEEEEESCEEEEETT-EEEEECTTCEEEE---CTTSCEEEEC-CSSSCEEEEEE
T ss_pred EEE-CCCCcCCccCCCCCcEEEEEEeCEEEEEECC-EEEEeCCCCEEEE---CCCCcEEeEe-CCCCCEEEEEE
Confidence 344 777766433334 356999999999997765 4577899998722 2344444333 22345666655
No 69
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=90.51 E-value=2.3 Score=27.25 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=42.5
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+ .+|..+-..-.+...+++|++|++.+..++. ...+++||++=- =.+.++... +.+++.++.+
T Consensus 45 ~~~-~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~i---p~~~~H~~~---~~~~~~~~~v 109 (115)
T 1yhf_A 45 FSL-DKGQEIGRHSSPGDAMVTILSGLAEITIDQE-TYRVAEGQTIVM---PAGIPHALY---AVEAFQMLLV 109 (115)
T ss_dssp EEE-CTTCEEEEECCSSEEEEEEEESEEEEEETTE-EEEEETTCEEEE---CTTSCEEEE---ESSCEEEEEE
T ss_pred EEE-CCCCccCCEECCCcEEEEEEeCEEEEEECCE-EEEECCCCEEEE---CCCCCEEEE---ECCCceEEEE
Confidence 345 7787764444456789999999999987654 467999998732 234444433 3456666654
No 70
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=90.22 E-value=1.1 Score=31.94 Aligned_cols=54 Identities=19% Similarity=0.082 Sum_probs=37.1
Q ss_pred CCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 98 EELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 98 d~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+..+++|++|++.+..++. ...+++||+|=-- .+.++.... ...+.|.++.+
T Consensus 108 h~gEE~~yVLeG~v~vtl~g~-~~~L~~Gds~~iP---~g~~H~~~N-~~d~~Arll~V 161 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTVCKN-KFLSVKGSTFQIP---AFNEYAIAN-RGNDEAKMFFV 161 (166)
T ss_dssp CSEEEEEEEEESEEEEEETTE-EEEEETTCEEEEC---TTCEEEEEE-CSSSCEEEEEE
T ss_pred CCceEEEEEEEeEEEEEECCE-EEEEcCCCEEEEC---CCCCEEEEE-CCCCCEEEEEE
Confidence 346779999999999988654 5689999998322 355555444 34455666654
No 71
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=90.21 E-value=2.5 Score=27.14 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=43.2
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
...+ ++|..+-..-.+...+++|++|++.+..++. ...+++||++=- =.+.++... +.++|.++.+
T Consensus 38 ~~~~-~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~i---p~~~~H~~~---~~~~~~~l~v 103 (116)
T 2pfw_A 38 KIWF-DKGAEGYVHAHRHSQVSYVVEGEFHVNVDGV-IKVLTAGDSFFV---PPHVDHGAV---CPTGGILIDT 103 (116)
T ss_dssp EEEE-CTTEEEEEECCSSEEEEEEEEECEEEEETTE-EEEECTTCEEEE---CTTCCEEEE---ESSCEEEEEE
T ss_pred EEEE-CCCCcCCcEECCcceEEEEEeeEEEEEECCE-EEEeCCCCEEEE---CcCCceeeE---eCCCcEEEEE
Confidence 3445 7887654333447789999999999987554 677999998622 234444433 3457777766
No 72
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=90.09 E-value=1.4 Score=30.79 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=39.2
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
++|..+-..-.+...+++|++|++.+..++. ...+++||++= +=.+.++.... ...+++.++.+
T Consensus 52 ~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g~-~~~l~~Gd~i~---ip~~~~H~~~n-~g~~~~~~l~i 115 (156)
T 3kgz_A 52 DEGGYSTLERHAHVHAVMIHRGHGQCLVGET-ISDVAQGDLVF---IPPMTWHQFRA-NRGDCLGFLCV 115 (156)
T ss_dssp EEEEECCCBBCSSCEEEEEEEEEEEEEETTE-EEEEETTCEEE---ECTTCCEEEEC-CSSSCEEEEEE
T ss_pred CCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEE---ECCCCcEEeEe-CCCCCEEEEEE
Confidence 6666553333456678999999999987654 66789999872 12344444333 23344554443
No 73
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=90.07 E-value=2.5 Score=31.65 Aligned_cols=70 Identities=7% Similarity=-0.023 Sum_probs=46.6
Q ss_pred cceeEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 81 MVFAVVEKAGTIVM-NDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 81 ~~~~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
+....+ ++|..+- ..-......++|++|+..+..++. ...+++||++=- =.+.++.... ...++|..+..
T Consensus 167 ~~~~tl-~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~-~~~l~~GD~~~~---~~~~pH~~~n-~g~~~~~yl~~ 237 (246)
T 1sfn_A 167 VSTMSF-APGASLPYAEVHYMEHGLLMLEGEGLYKLEEN-YYPVTAGDIIWM---GAHCPQWYGA-LGRNWSKYLLY 237 (246)
T ss_dssp EEEEEE-CTTCBCSSCBCCSSCEEEEEEECEEEEEETTE-EEEEETTCEEEE---CTTCCEEEEE-ESSSCEEEEEE
T ss_pred EEEEEE-CCCCccCcccCCCceEEEEEEECEEEEEECCE-EEEcCCCCEEEE---CCCCCEEEEc-CCCCCEEEEEE
Confidence 444556 8887764 345567789999999999987654 458999999732 2355555444 34456655544
No 74
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=89.80 E-value=1.2 Score=31.52 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=39.4
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
.+|..+-..-.....+++|++|++.+..++. ...+++||++=- -.+.++.... ...+++.++.+
T Consensus 61 ~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g~-~~~l~~GD~i~i---p~g~~H~~~n-~~~~~~~~l~i 124 (166)
T 3jzv_A 61 GPGGHSTLERHQHAHGVMILKGRGHAMVGRA-VSAVAPYDLVTI---PGWSWHQFRA-PADEALGFLCM 124 (166)
T ss_dssp EEEEECCCBBCSSCEEEEEEEECEEEEETTE-EEEECTTCEEEE---CTTCCEEEEC-CTTSCEEEEEE
T ss_pred CCCCccCceeCCCcEEEEEEeCEEEEEECCE-EEEeCCCCEEEE---CCCCcEEeEe-CCCCCEEEEEE
Confidence 6666553333456678999999999987654 677899998722 2344444333 23344544443
No 75
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=89.60 E-value=1.9 Score=28.48 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=39.7
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
++|..+-.--.+...+++|++|++.+..++. ...+.+||++=- -.+.++.... ...+++.++.+
T Consensus 56 ~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~i---p~g~~H~~~~-~~~~~~~~l~v 119 (126)
T 1vj2_A 56 EPGGLIDRHSHPWEHEIFVLKGKLTVLKEQG-EETVEEGFYIFV---EPNEIHGFRN-DTDSEVEFLCL 119 (126)
T ss_dssp EEEEEEEEECCSSCEEEEEEESEEEEECSSC-EEEEETTEEEEE---CTTCCEEEEC-CSSSCEEEEEE
T ss_pred CCCCcCCceeCCCcEEEEEEEeEEEEEECCE-EEEECCCCEEEE---CCCCcEEeEe-CCCCCEEEEEE
Confidence 6666553333447789999999999987654 467899988722 2344544333 23345666554
No 76
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=89.58 E-value=0.65 Score=31.33 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=36.5
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEE
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVM 144 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv 144 (167)
.+|..-.+..+ .+.+++|++|++.+...++....+++||.+--- .+.++...+
T Consensus 57 ~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~g~~~~l~~GD~~~ip---~g~~h~~~~ 109 (123)
T 3bcw_A 57 TSGSFQSNTTG-YIEYCHIIEGEARLVDPDGTVHAVKAGDAFIMP---EGYTGRWEV 109 (123)
T ss_dssp EEEEEECCCTT-EEEEEEEEEEEEEEECTTCCEEEEETTCEEEEC---TTCCCEEEE
T ss_pred CCCceeeEcCC-CcEEEEEEEEEEEEEECCCeEEEECCCCEEEEC---CCCeEEEEE
Confidence 56665544332 378999999999998866667789999998433 344444444
No 77
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=89.52 E-value=2.2 Score=27.75 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=31.4
Q ss_pred CCCCeEEEEEEeEEEEEEcCcee-EEecCCCeeeecccccCCceeeEE
Q psy7149 98 EELDSWSVVINGCVEVELSDGRS-QMLQVGDSFGILPTMEKLYHEGVM 144 (167)
Q Consensus 98 d~~~~lyiI~~G~v~v~~~~~~~-~~l~~Gd~FGe~all~~~~r~~tv 144 (167)
...+.+++|++|++.+..++... ..+++||++=-- .+.++....
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ip---a~~~H~~~n 95 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLHVP---AHCRHRVAW 95 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSSCEEECTTEEEEEC---TTCCEEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEEEEEECCCCEEEEC---CCCcEEEEe
Confidence 45778999999999998876642 679999987332 345554433
No 78
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=89.50 E-value=1.1 Score=29.40 Aligned_cols=74 Identities=19% Similarity=0.385 Sum_probs=47.0
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCc-eEEEEE---eHH
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDD-CQFVCI---TQT 159 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~-~~ll~i---~~~ 159 (167)
..+ ++|..+-..-.+...+++|++|++.+..++. ...+++||++=- =.+.++.... .++ |.++.+ +++
T Consensus 46 ~~~-~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~-~~~l~~Gd~~~i---p~~~~H~~~~---~~~~~~~l~v~~p~~~ 117 (126)
T 4e2g_A 46 VRI-EPNTEMPAHEHPHEQAGVMLEGTLELTIGEE-TRVLRPGMAYTI---PGGVRHRART---FEDGCLVLDIFSPPRE 117 (126)
T ss_dssp EEE-CTTCEEEEECCSSEEEEEEEEECEEEEETTE-EEEECTTEEEEE---CTTCCEEEEC---CTTCEEEEEEEESCCH
T ss_pred EEE-CCCCcCCCccCCCceEEEEEEeEEEEEECCE-EEEeCCCCEEEE---CCCCcEEeEE---CCCCEEEEEEECCCCc
Confidence 445 7887765444556889999999999987654 478899988622 2344444332 334 665544 345
Q ss_pred HHHHHh
Q psy7149 160 DYYRIQ 165 (167)
Q Consensus 160 ~f~~ll 165 (167)
+|...+
T Consensus 118 d~~~~~ 123 (126)
T 4e2g_A 118 DYARMA 123 (126)
T ss_dssp HHHHHH
T ss_pred chhhhh
Confidence 666544
No 79
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=89.05 E-value=0.97 Score=33.74 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=32.3
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCee
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSF 129 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~F 129 (167)
.+|..+=.--.+.+.+|+|++|.+++..+++....+++|+.+
T Consensus 140 ~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v 181 (217)
T 4b29_A 140 GPGLDYGWHEHLPEELYSVVSGRALFHLRNAPDLMLEPGQTR 181 (217)
T ss_dssp CSSCEEEEEECSSEEEEEEEEECEEEEETTSCCEEECTTCEE
T ss_pred CCCCcCCCCCCCCceEEEEEeCCEEEEECCCCEEecCCCCEE
Confidence 444443333356889999999999998887778889999887
No 80
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=89.05 E-value=0.4 Score=32.26 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=33.9
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecc
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILP 133 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~a 133 (167)
.+|..-... +..+-++.|++|++.+...++....+++||.|---+
T Consensus 50 tPG~~~~~~-~~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~~P~ 94 (116)
T 3es4_A 50 EPGIYNYAG-RDLEETFVVVEGEALYSQADADPVKIGPGSIVSIAK 94 (116)
T ss_dssp CSEEEEECC-CSEEEEEEEEECCEEEEETTCCCEEECTTEEEEECT
T ss_pred CCceeECee-CCCcEEEEEEEeEEEEEeCCCeEEEECCCCEEEECC
Confidence 566554444 334478899999999998888888999999985443
No 81
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=88.79 E-value=3.4 Score=30.75 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=45.3
Q ss_pred cceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEe
Q psy7149 81 MVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157 (167)
Q Consensus 81 ~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~ 157 (167)
+....+ ++|..+-.--.+...+++|++|.+.+..++ ....+.+||.+=- +=.+.++.... ...++|.++.+.
T Consensus 36 ~~~~~~-~pg~~~~~H~H~~~e~~~Vl~G~~~~~~~~-~~~~l~~Gd~i~~--ip~~~~H~~~n-~~~~~~~~l~i~ 107 (243)
T 3h7j_A 36 VLMSYV-PPHTNVEPHQHKEVQIGMVVSGELMMTVGD-VTRKMTALESAYI--APPHVPHGARN-DTDQEVIAIDIK 107 (243)
T ss_dssp EEEEEE-CTTEEEEEECCSSEEEEEEEESEEEEEETT-EEEEEETTTCEEE--ECTTCCEEEEE-CSSSCEEEEEEE
T ss_pred EEEEEE-CCCCccCCEECCCcEEEEEEEeEEEEEECC-EEEEECCCCEEEE--cCCCCcEeeEe-CCCCcEEEEEEe
Confidence 334456 888877655556788999999999998854 4578999985410 11344444333 233446666553
No 82
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=88.62 E-value=0.99 Score=30.77 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=31.2
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeee
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFG 130 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FG 130 (167)
..+ .+|..-. ....+-+++|++|++.+..++ ....+++||.|-
T Consensus 62 ~~~-~pG~~~~--h~~~~E~~~VLeG~~~l~~~g-~~~~l~~GD~i~ 104 (133)
T 2pyt_A 62 MQW-DNAFFPW--TLNYDEIDMVLEGELHVRHEG-ETMIAKAGDVMF 104 (133)
T ss_dssp EEE-EEEEEEE--ECSSEEEEEEEEEEEEEEETT-EEEEEETTCEEE
T ss_pred EEE-CCCCccc--cCCCCEEEEEEECEEEEEECC-EEEEECCCcEEE
Confidence 345 7774222 234678999999999998874 455899999984
No 83
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=88.59 E-value=1.3 Score=30.62 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=31.0
Q ss_pred eEEccCCcE-E-EecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCee
Q psy7149 84 AVVEKAGTI-V-MNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSF 129 (167)
Q Consensus 84 ~~~~~~ge~-I-~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~F 129 (167)
..+ ++|.. . .+.......+++|++|++.+..++. ...+++||++
T Consensus 51 ~~l-~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~-~~~l~~Gd~i 96 (162)
T 3l2h_A 51 IQI-EPGKESTEYHLHHYEEEAVYVLSGKGTLTMEND-QYPIAPGDFV 96 (162)
T ss_dssp EEE-CTTCBSSSSBEESSCCEEEEEEESCEEEEETTE-EEEECTTCEE
T ss_pred EEE-CCCCcCCCCccCCCCCEEEEEEEEEEEEEECCE-EEEeCCCCEE
Confidence 344 66663 2 2223356789999999999987664 4779999987
No 84
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=88.44 E-value=1.5 Score=30.67 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=31.2
Q ss_pred eEEccCCcEE--EecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeee
Q psy7149 84 AVVEKAGTIV--MNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFG 130 (167)
Q Consensus 84 ~~~~~~ge~I--~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FG 130 (167)
..+ .+|... .+.....+.+++|++|++.+..++. ...+++||++=
T Consensus 48 ~~l-~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~-~~~l~~GD~i~ 94 (163)
T 3i7d_A 48 VRL-EPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQG-EHPMVPGDCAA 94 (163)
T ss_dssp EEE-CTTCBSSSSEEESSCCEEEEEEESCEEEEETTE-EEEECTTCEEE
T ss_pred EEE-CCCCcCCCCccCCCCcEEEEEEECEEEEEECCE-EEEeCCCCEEE
Confidence 344 666643 2233334689999999999988665 56789999873
No 85
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=88.38 E-value=2.6 Score=29.48 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=33.8
Q ss_pred CCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 99 ELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 99 ~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+-+++|++|++.+.. ++....+++||.|=- =.+.+..... .+.|.++.+
T Consensus 83 ~~eE~~yVLeG~~~l~i-~g~~~~l~~GD~i~i---P~G~~h~~~n---~~~a~~l~V 133 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-DGRKVSASSGELIFI---PKGSKIQFSV---PDYARFIYV 133 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-TTEEEEEETTCEEEE---CTTCEEEEEE---EEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE-CCEEEEEcCCCEEEE---CCCCEEEEEe---CCCEEEEEE
Confidence 46678899999999987 445788999998822 1344444333 245555544
No 86
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=88.17 E-value=2.4 Score=31.57 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=44.0
Q ss_pred eEEccC-CcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 84 AVVEKA-GTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~-ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+ ++ |..+-..-.+...+++|++|++.+..++. ...+++||.+--- .+.++.... ...+++.++.+
T Consensus 150 ~~~-~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~ip---~~~~H~~~n-~~~~~~~~l~v 217 (243)
T 3h7j_A 150 AKI-PGNGGEMPFHKHRNEQIGICIGGGYDMTVEGC-TVEMKFGTAYFCE---PREDHGAIN-RSEKESKSINI 217 (243)
T ss_dssp EEE-CTTTEEEEEECCSSEEEEEECSSCEEEEETTE-EEEECTTCEEEEC---TTCCEEEEE-CSSSCEEEEEE
T ss_pred EEE-CCCCCcCCCEeCCCcEEEEEEECEEEEEECCE-EEEECCCCEEEEC---CCCcEEeEe-CCCCCEEEEEE
Confidence 345 77 77765444556789999999999988765 4569999997433 344554443 23345655554
No 87
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=87.92 E-value=0.86 Score=29.18 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=42.5
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHH
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDY 161 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f 161 (167)
.+|....+..+....+++|++|++.+..+++....+++||.+=- =.+.++.... .++|.++.+.....
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~~~i---p~~~~H~~~~---~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFADGGSMTIREGEMAVV---PKSVSHRPRS---ENGCSLVLIELSDP 103 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETTSCEEEECTTEEEEE---CTTCCEEEEE---EEEEEEEEEECC--
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECCCcEEEECCCCEEEE---CCCCcEeeEe---CCCeEEEEEECCCc
Confidence 45553333333337899999999999887745678999998722 2355554433 35677887765543
No 88
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=87.83 E-value=3.5 Score=27.55 Aligned_cols=67 Identities=16% Similarity=0.028 Sum_probs=40.5
Q ss_pred eEEccCCcEEEecCCC-CCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 84 AVVEKAGTIVMNDGEE-LDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~-~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+ ++|..+-.--.+ ...+++|++|++.+..++. ...+.+||++= +-.+.++.... ...+++.++.+
T Consensus 62 ~~~-~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~-~~~l~~Gd~i~---i~~~~~H~~~n-~~~~~~~~l~v 129 (133)
T 1o4t_A 62 MKL-PPGSSVGLHKHEGEFEIYYILLGEGVFHDNGK-DVPIKAGDVCF---TDSGESHSIEN-TGNTDLEFLAV 129 (133)
T ss_dssp EEE-CTTCEEEEEECCSEEEEEEEEESEEEEEETTE-EEEEETTEEEE---ECTTCEEEEEC-CSSSCEEEEEE
T ss_pred EEE-CCCCccCceECCCccEEEEEEeCEEEEEECCE-EEEeCCCcEEE---ECCCCcEEeEE-CCCCCEEEEEE
Confidence 345 777755322233 3689999999999987654 56789999872 22344444333 23345655554
No 89
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=87.79 E-value=4.2 Score=27.67 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=40.3
Q ss_pred EEccCCcEEE-ecCCCCCeEEEEEEeEEEEEEcCce-----eEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 85 VVEKAGTIVM-NDGEELDSWSVVINGCVEVELSDGR-----SQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 85 ~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~~~~~-----~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
.+ .+|..+- ......+.+++|++|++.+..++.. ...+.+||++= +=.+.++.... ...+++.++.+
T Consensus 49 ~l-~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~---ip~g~~H~~~n-~~~~~~~~l~i 121 (148)
T 2oa2_A 49 SI-QVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAIL---IPAGTWHNVRN-TGNRPLKLYSI 121 (148)
T ss_dssp EE-CTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEE---ECTTCEEEEEE-CSSSCEEEEEE
T ss_pred EE-CCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEE---ECCCCcEEEEE-CCCCCEEEEEE
Confidence 44 6666542 2233345899999999999876543 27899999762 22344554433 22345655554
No 90
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=86.86 E-value=3.2 Score=27.14 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=36.8
Q ss_pred cCCcEEE--ecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 88 KAGTIVM--NDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 88 ~~ge~I~--~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
++|..+- ...+...-+|+|++|++.+..++. ...+++||++= +-.+.++.... ...+++.++.+
T Consensus 34 ~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~-~~~l~~Gd~i~---i~~~~~H~~~~-~~~~~~~~~~i 99 (125)
T 3cew_A 34 PAGAGVPFVHSHKQNEEIYGILSGKGFITIDGE-KIELQAGDWLR---IAPDGKRQISA-ASDSPIGFLCI 99 (125)
T ss_dssp CTTCBCSSEEEESSEEEEEEEEEEEEEEEETTE-EEEEETTEEEE---ECTTCCEEEEE-BTTBCEEEEEE
T ss_pred CCCCCCCCCccCCCceEEEEEEeCEEEEEECCE-EEEeCCCCEEE---ECCCCcEEEEc-CCCCCEEEEEE
Confidence 6665442 232333457779999999987654 56789998872 22344444333 22244554443
No 91
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=86.53 E-value=4.4 Score=25.49 Aligned_cols=65 Identities=15% Similarity=0.019 Sum_probs=39.7
Q ss_pred EEccCCcEEEecCCC-CCeE-EEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 85 VVEKAGTIVMNDGEE-LDSW-SVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 85 ~~~~~ge~I~~~Gd~-~~~l-yiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
.+ .+|..+-..-.+ ...+ ++|++|++.+..+++....+++||++=-- .+.++... +.+++.++.+
T Consensus 39 ~~-~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~~~l~~Gd~~~ip---~~~~H~~~---~~~~~~~l~~ 105 (110)
T 2q30_A 39 TF-KAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAVIPAPRGAVLVAP---ISTPHGVR---AVTDMKVLVT 105 (110)
T ss_dssp EE-CTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCEEEECTTEEEEEE---TTSCEEEE---ESSSEEEEEE
T ss_pred EE-CCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEEEEECCCCEEEeC---CCCcEEEE---EcCCcEEEEE
Confidence 44 777766433333 2455 79999999998764456789999876221 34444333 3455655544
No 92
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=86.17 E-value=2.3 Score=29.44 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=39.3
Q ss_pred EEccCCcEE-EecCCCCCeEEEEEEeEEEEEEcCc--------eeEEecCCCeeeecccccCCceeeEEEEe-cCceEEE
Q psy7149 85 VVEKAGTIV-MNDGEELDSWSVVINGCVEVELSDG--------RSQMLQVGDSFGILPTMEKLYHEGVMRTR-CDDCQFV 154 (167)
Q Consensus 85 ~~~~~ge~I-~~~Gd~~~~lyiI~~G~v~v~~~~~--------~~~~l~~Gd~FGe~all~~~~r~~tv~~a-~~~~~ll 154 (167)
.+ ++|..+ .+.. ....+++|++|++.+..++. ....+.+||++=- =.+.++.... .. .+++.++
T Consensus 47 ~~-~pg~~~~~H~H-~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~i---p~~~~H~~~n-~~~~~~~~~l 120 (163)
T 1lr5_A 47 TI-SPGQRTPIHRH-SCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSI---PVNDPHQVWN-SDEHEDLQVL 120 (163)
T ss_dssp EE-CTTCBCCEEEE-SSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEE---CTTCCEEEEC-CCSSSCEEEE
T ss_pred EE-CCCCcCCCeEC-CCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEE---CCCCcEEeEe-CCCCCCEEEE
Confidence 44 666654 2222 35569999999999987651 5678999998722 2344444333 12 2345555
Q ss_pred EE
Q psy7149 155 CI 156 (167)
Q Consensus 155 ~i 156 (167)
.+
T Consensus 121 ~i 122 (163)
T 1lr5_A 121 VI 122 (163)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 93
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=86.09 E-value=5.3 Score=26.04 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=45.8
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceE--EEEEeHHHH
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQ--FVCITQTDY 161 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~--ll~i~~~~f 161 (167)
..+ ++|...-..-.....+++|++|++.+..++. ...+++||++=- -.+.++.... ...+++. ++.++.+.+
T Consensus 39 ~~~-~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~~-~~~l~~Gd~~~i---~~~~~H~~~~-~~~~~~~~~~i~f~~~~~ 112 (128)
T 4i4a_A 39 CIV-RPETKSFRHSHNEYELFIVIQGNAIIRINDE-DFPVTKGDLIII---PLDSEHHVIN-NNQEDFHFYTIWWDKEST 112 (128)
T ss_dssp EEE-CTTEECCCBCCSSEEEEEEEESEEEEEETTE-EEEEETTCEEEE---CTTCCEEEEE-CSSSCEEEEEEEECHHHH
T ss_pred EEE-CCCCccCCEecCCeEEEEEEeCEEEEEECCE-EEEECCCcEEEE---CCCCcEEeEe-CCCCCEEEEEEEECHHHH
Confidence 344 6676443333456789999999999987654 567899988722 2344444333 2234444 445566666
Q ss_pred HHHh
Q psy7149 162 YRIQ 165 (167)
Q Consensus 162 ~~ll 165 (167)
..++
T Consensus 113 ~~~~ 116 (128)
T 4i4a_A 113 LNFL 116 (128)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 94
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=85.85 E-value=5.4 Score=28.20 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=28.6
Q ss_pred CCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeE
Q psy7149 100 LDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGV 143 (167)
Q Consensus 100 ~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~t 143 (167)
...+++|++|++.+..++ ....+.+||++=- =.+.++...
T Consensus 126 ~~E~~~Vl~G~~~~~~~~-~~~~l~~GD~i~i---~~~~~H~~~ 165 (192)
T 1y9q_A 126 VIEYIHVLEGIMKVFFDE-QWHELQQGEHIRF---FSDQPHGYA 165 (192)
T ss_dssp CEEEEEEEESCEEEEETT-EEEEECTTCEEEE---ECSSSEEEE
T ss_pred CEEEEEEEEeEEEEEECC-EEEEeCCCCEEEE---cCCCCeEeE
Confidence 468999999999998764 4568999998722 234555433
No 95
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=85.83 E-value=2.7 Score=33.44 Aligned_cols=74 Identities=9% Similarity=0.115 Sum_probs=46.0
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHH
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDY 161 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f 161 (167)
...+ ++|...-.--.....+++|++|+..++.-++....+++||+|=- =.+.++.... ...+++.++.+....+
T Consensus 104 ~~~l-~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g~~~~l~~GD~~~i---P~g~~H~~~n-~~~~~~~~l~v~d~p~ 177 (354)
T 2d40_A 104 LQLI-MPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILT---PQWRWHDHGN-PGDEPVIWLDGLDLPL 177 (354)
T ss_dssp EEEE-CTTCEEEEEEESSCEEEEEEECSSCEEEETTEEEECCTTCEEEE---CTTSCEEEEC-CSSSCEEEEEEECHHH
T ss_pred EEEE-CCCCCcCCeecCcceEEEEEEEEEEEEEECCEEEEEcCCCEEEE---CCCCcEEeEe-CCCCCEEEEEEECchh
Confidence 3445 78877633333567999999999887333445678999999832 2344544333 2335677777654443
No 96
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=85.72 E-value=1.9 Score=31.06 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=38.4
Q ss_pred EEEecCCCCCeEEEEEEeEEEEEEcC-c------eeEEecCCCeeeeccccc-CCceeeEEEEecCceEEEEEeH
Q psy7149 92 IVMNDGEELDSWSVVINGCVEVELSD-G------RSQMLQVGDSFGILPTME-KLYHEGVMRTRCDDCQFVCITQ 158 (167)
Q Consensus 92 ~I~~~Gd~~~~lyiI~~G~v~v~~~~-~------~~~~l~~Gd~FGe~all~-~~~r~~tv~~a~~~~~ll~i~~ 158 (167)
..++ -++.+.++++++|.+.+...+ + ....+++||+| ++. +.+++ -+ +..++..+.+.+
T Consensus 47 ~D~H-~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmf----llP~gvpHs-P~--r~~e~v~lviEr 113 (176)
T 1zvf_A 47 TDYH-INPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSY----LLPGNVPHS-PV--RFADTVGIVVEQ 113 (176)
T ss_dssp SCEE-ECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEE----EECTTCCEE-EE--ECTTCEEEEEEE
T ss_pred CcCc-CCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEE----EcCCCCCcC-Cc--ccCCcEEEEEEe
Confidence 4444 456778999999999995433 3 35678999988 443 44433 32 346677777754
No 97
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=85.47 E-value=3.5 Score=33.48 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=49.5
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEe-cCceEEEEEeHHHH
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTR-CDDCQFVCITQTDY 161 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a-~~~~~ll~i~~~~f 161 (167)
...+ ++|+..-..-.....+|+|++|+..+..+ +....+++||+|=-- .+..+.... .. .+++.++.+...-+
T Consensus 298 ~~~l-~PG~~~~~HrH~~~~v~~VleG~G~~~V~-ge~~~~~~GD~~~iP---~g~~H~~~N-~g~~e~~~ll~i~D~Pl 371 (394)
T 3bu7_A 298 MQML-RPGEHTKAHRHTGNVIYNVAKGQGYSIVG-GKRFDWSEHDIFCVP---AWTWHEHCN-TQERDDACLFSFNDFPV 371 (394)
T ss_dssp EEEE-CTTCBCCCEEESSCEEEEEEECCEEEEET-TEEEEECTTCEEEEC---TTCCEEEEE-CCSSCCEEEEEEESHHH
T ss_pred EEEE-CCCCcCCCcccCCcEEEEEEeCeEEEEEC-CEEEEEeCCCEEEEC---CCCeEEeEe-CCCCCCeEEEEeeCHHH
Confidence 3444 77776644444567899999999866654 457789999998433 233443333 22 46788888876655
Q ss_pred HHHh
Q psy7149 162 YRIQ 165 (167)
Q Consensus 162 ~~ll 165 (167)
.+.|
T Consensus 372 ~~~L 375 (394)
T 3bu7_A 372 MEKL 375 (394)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 98
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=84.76 E-value=2.7 Score=28.91 Aligned_cols=69 Identities=9% Similarity=-0.087 Sum_probs=44.3
Q ss_pred cceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCcee--EEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 81 MVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRS--QMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 81 ~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~--~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
+...++ ++|..+-.-..+....++|++|+.... .+... ..+++||++=.-+ +..+.. + .+.++|.++.+
T Consensus 46 ~~~~~~-~pG~~~p~H~H~~~ee~~VL~G~~~~~-~g~~~~~~~~~~Gd~~~~p~---g~~H~p-~-~~~e~~~~l~~ 116 (145)
T 2o1q_A 46 TAIFDC-PAGSSFAAHVHVGPGEYFLTKGKMDVR-GGKAAGGDTAIAPGYGYESA---NARHDK-T-EFPVASEFYMS 116 (145)
T ss_dssp EEEEEE-CTTEEECCEEESSCEEEEEEEEEEEET-TCGGGTSEEEESSEEEEECT---TCEESC-C-EEEEEEEEEEE
T ss_pred EEEEEE-CCCCCCCccCCCCCEEEEEEEeEEEEc-CCCEecceEeCCCEEEEECc---CCccCC-e-ECCCCeEEEEE
Confidence 445667 899988766667788899999999853 33333 5778888874432 333331 1 23455666654
No 99
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=84.73 E-value=3.1 Score=31.92 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=43.3
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeH
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQ 158 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~ 158 (167)
..+ ++|.---.....+..+.+|++|++.+..+++....|++||+|=-- .+.++.... .++++++.+.+
T Consensus 75 v~l-~PGg~s~~~~h~~EEfiyVleG~l~l~l~~g~~~~L~~Gds~y~p---~~~~H~~~N---~~~Ar~l~V~k 142 (266)
T 4e2q_A 75 AKM-KEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLP---PNFHHSLDC---VESATLVVFER 142 (266)
T ss_dssp EEE-CSSEECCCCCTTEEEEEEEEEECEEEEC--CCCEEECTTEEEEEC---TTCCCEEEE---SSCEEEEEEEE
T ss_pred EEE-CcCCcCCCCCCCCeEEEEEEEEEEEEEECCCcEEEEcCCCEEEEC---CCCCEEEEe---CCCEEEEEEEe
Confidence 344 676653222345779999999999998874456789999987322 344443332 36778877754
No 100
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=84.27 E-value=6.6 Score=31.13 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=40.8
Q ss_pred cCCcEEEecCCCC-CeEEEEEEeEEEEEEc--C--ceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 88 KAGTIVMNDGEEL-DSWSVVINGCVEVELS--D--GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 88 ~~ge~I~~~Gd~~-~~lyiI~~G~v~v~~~--~--~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
++|...-..-.+. ..+++|++|++.+... + +....+++||+|=-- .+.++.... ...+++.++.+
T Consensus 265 ~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ip---~~~~H~~~n-~~~~~~~~l~v 334 (385)
T 1j58_A 265 EPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVP---FAMGHYVEN-IGDEPLVFLEI 334 (385)
T ss_dssp CTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEEC---TTCBEEEEE-CSSSCEEEEEE
T ss_pred CCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEEC---CCCeEEEEE-CCCCCEEEEEE
Confidence 6776653333344 7899999999998653 2 356789999998322 344444333 23355666665
No 101
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=84.16 E-value=3 Score=30.21 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=43.4
Q ss_pred cceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 81 MVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 81 ~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
+...++ ++|..+-....++..+++|++|... .+ ...+++||++=.- .+..+...+ ...+.|.++.+
T Consensus 127 v~l~~~-~pG~~~p~H~H~g~E~~~VL~G~f~---de--~~~~~~Gd~~~~p---~g~~H~p~a-~~~~gc~~l~~ 192 (195)
T 2q1z_B 127 ARLLWI-PGGQAVPDHGHRGLELTLVLQGAFR---DE--TDRFGAGDIEIAD---QELEHTPVA-ERGLDCICLAA 192 (195)
T ss_dssp EEEEEE-CTTCBCCCCCCSSCEEEEEEESEEE---CS--SSEEETTCEEEEC---SSCCCCCEE-CSSSCEEEEEE
T ss_pred EEEEEE-CCCCCCCCcCCCCeEEEEEEEEEEE---CC--cEEECCCeEEEeC---cCCccCCEe-CCCCCEEEEEE
Confidence 345566 8898888777789999999999965 22 2467899887332 233333222 12567887765
No 102
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=83.77 E-value=4.2 Score=29.21 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=38.6
Q ss_pred EEEecCCCCCeEEEEEEeEEEEEEcC-c--eeEEecCCCeeeecccc-cCCceeeEEEEecC-ceEEEEEeH
Q psy7149 92 IVMNDGEELDSWSVVINGCVEVELSD-G--RSQMLQVGDSFGILPTM-EKLYHEGVMRTRCD-DCQFVCITQ 158 (167)
Q Consensus 92 ~I~~~Gd~~~~lyiI~~G~v~v~~~~-~--~~~~l~~Gd~FGe~all-~~~~r~~tv~~a~~-~~~ll~i~~ 158 (167)
..++ -++.+-+|++++|.+.+...+ + ....+++||+| ++ .+.+++ -+ +.. +|..+.+.+
T Consensus 48 ~d~H-~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f----~lP~gvpH~-P~--r~~~e~~~lviE~ 111 (174)
T 1yfu_A 48 TDYH-DDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIF----LLPPHVRHS-PQ--RPEAGSACLVIER 111 (174)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEE----EECTTCCEE-EE--BCCTTCEEEEEEE
T ss_pred ccCc-CCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEE----EeCCCCCcC-cc--ccCCCCEEEEEEe
Confidence 4455 336789999999999996533 2 45678999998 34 344432 22 344 777777754
No 103
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=83.21 E-value=4.7 Score=31.92 Aligned_cols=69 Identities=13% Similarity=-0.031 Sum_probs=47.2
Q ss_pred CcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccc-cCCceeeEEEEecCceEEEEEeH--HHHHHH
Q psy7149 90 GTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTM-EKLYHEGVMRTRCDDCQFVCITQ--TDYYRI 164 (167)
Q Consensus 90 ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all-~~~~r~~tv~~a~~~~~ll~i~~--~~f~~l 164 (167)
|+.+-.--.+.+.+++|++|++++..++.....+++||+| ++ .+.++...+ ....+.+|.+.+ ..+..+
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i~g~~~~~l~~Gd~~----~iPag~~h~~~~--~~~~~~~l~~~~g~~g~~~~ 333 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQIGDYAATELGSGDVA----FIPGGVEFKYYS--EAYFSKVLFVSSGSDGLDQN 333 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEETTSCCEEECTTCEE----EECTTCCEEEEE--SSSSEEEEEEEESSSSHHHH
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEECCeEEEEeCCCCEE----EECCCCCEEEEe--cCCeEEEEEEecCccchhhe
Confidence 4445444567889999999999999877456789999987 33 455554443 233477787765 455544
No 104
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=82.88 E-value=8.7 Score=28.62 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=41.6
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEe
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~ 157 (167)
..+ ++|...-..- .+.+++|++|++.+..++. ...|++||++=-- .+.++.... . +++.++.+.
T Consensus 55 ~~l-~Pg~~~~~~~--~ee~~~Vl~G~~~~~~~~~-~~~l~~Gd~~~~p---~~~~H~~~n-~--~~~~~l~v~ 118 (246)
T 1sfn_A 55 AEM-PAGAQATESV--YQRFAFVLSGEVDVAVGGE-TRTLREYDYVYLP---AGEKHMLTA-K--TDARVSVFE 118 (246)
T ss_dssp EEE-CTTCEEECCS--SEEEEEEEEEEEEEECSSC-EEEECTTEEEEEC---TTCCCEEEE-E--EEEEEEEEE
T ss_pred EEE-CCCCcCCCCc--eeEEEEEEECEEEEEECCE-EEEECCCCEEEEC---CCCCEEEEe-C--CCEEEEEEE
Confidence 344 7776554432 7788999999999987654 5689999987332 345554443 2 456666553
No 105
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=82.70 E-value=2.1 Score=30.50 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=33.0
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc---CceeEEecCCCeee
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELS---DGRSQMLQVGDSFG 130 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~---~~~~~~l~~Gd~FG 130 (167)
..+ ++|.........++.+++|++|++.+... +.....+++||++=
T Consensus 46 ~~l-~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~ 94 (178)
T 1dgw_A 46 YCS-KPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 94 (178)
T ss_dssp EEE-CTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEe-cCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 345 78876644444468999999999998642 34567899999883
No 106
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=82.57 E-value=3.6 Score=27.42 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=36.0
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEE--EcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVE--LSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~--~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
++|..+-..-.+...+++|++|++.+. .++ ....+++||++=-- .+.++.... ...+++.++.+
T Consensus 47 ~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~-~~~~l~~Gd~~~ip---~~~~H~~~~-~~~~~~~~l~i 112 (145)
T 3ht1_A 47 SPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQG-RTEEVGPGEAIFIP---RGEPHGFVT-GPGQTCRFLVV 112 (145)
T ss_dssp EEEEECCCEECSSCEEEEEEEECEEEEEGGGT-EEEEECTTCEEEEC---TTCCBEEEC-CTTCCEEEEEE
T ss_pred CCCCcCCCccCCCceEEEEEEeEEEEEEeECC-EEEEECCCCEEEEC---CCCeEEeEc-CCCCCEEEEEE
Confidence 455443222223445567999999998 554 56789999987322 344444333 22334555554
No 107
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=82.41 E-value=11 Score=26.97 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=32.8
Q ss_pred eeEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEEc-C----ce--eEEecCCCeee
Q psy7149 83 FAVVEKAGTIVM-NDGEELDSWSVVINGCVEVELS-D----GR--SQMLQVGDSFG 130 (167)
Q Consensus 83 ~~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~~-~----~~--~~~l~~Gd~FG 130 (167)
...+ .+|...- +.......+++|++|++.+... . +. ...+++||+|=
T Consensus 76 ~~~l-~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 76 RVDF-APGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEE-CTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEE-CCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 3455 7777653 3344467999999999998653 1 33 67899999883
No 108
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=82.30 E-value=7.8 Score=29.78 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=51.5
Q ss_pred cceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEe-cCCCeeeec---ccccCCceeeEEEEecCceEEEEE
Q psy7149 81 MVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQML-QVGDSFGIL---PTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 81 ~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l-~~Gd~FGe~---all~~~~r~~tv~~a~~~~~ll~i 156 (167)
+..... ++|+.+-.+-+.-+...++++|.+.|..++.....+ +.-+.|.+. ++.-+....+++ +|.++++++..
T Consensus 31 f~~~~L-~~Ge~~~~~~~~~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i-~a~~~~~~~v~ 108 (270)
T 2qjv_A 31 FDVWQL-XAGESITLPSDERERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXV-TAETDLELAVC 108 (270)
T ss_dssp EEEEEE-CTTCEEEECCSSEEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEE-EESSSEEEEEE
T ss_pred EEEEEe-cCCCEEEecCCCcEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECCCCEEEE-EecCCceEEEE
Confidence 344455 899988776666788889999999998876544443 466777654 333333336677 67788888765
Q ss_pred e
Q psy7149 157 T 157 (167)
Q Consensus 157 ~ 157 (167)
.
T Consensus 109 s 109 (270)
T 2qjv_A 109 S 109 (270)
T ss_dssp E
T ss_pred e
Confidence 4
No 109
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=82.27 E-value=4.7 Score=30.31 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=41.7
Q ss_pred eEEccCCcEEEec-C-CCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEe
Q psy7149 84 AVVEKAGTIVMND-G-EELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157 (167)
Q Consensus 84 ~~~~~~ge~I~~~-G-d~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~ 157 (167)
..+ ++|...-.. . ...+.+++|++|++.+..++. ...|++||++=-- .+.++.... ...++|.++.+.
T Consensus 64 ~~l-~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-~~~L~~Gd~~~~~---~~~~H~~~N-~~~~~~~~l~v~ 133 (261)
T 1rc6_A 64 VTL-HQNGGNQQGFGGEGIETFLYVISGNITAKAEGK-TFALSEGGYLYCP---PGSLMTFVN-AQAEDSQIFLYK 133 (261)
T ss_dssp EEE-EEEEEESSCSCCTTEEEEEEEEESEEEEEETTE-EEEEETTEEEEEC---TTCCCEEEE-CSSSCEEEEEEE
T ss_pred EEE-cCCCccCCCCCCCCceEEEEEEEeEEEEEECCE-EEEECCCCEEEEC---CCCCEEEEe-CCCCCEEEEEEE
Confidence 344 666544322 2 224578999999999987654 5789999988432 344554443 233556666653
No 110
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=82.27 E-value=7.6 Score=30.41 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=32.1
Q ss_pred eEEccCCcEEEecCCC-CCeEEEEEEeEEEEEE---cCc-eeEEecCCCeee
Q psy7149 84 AVVEKAGTIVMNDGEE-LDSWSVVINGCVEVEL---SDG-RSQMLQVGDSFG 130 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~-~~~lyiI~~G~v~v~~---~~~-~~~~l~~Gd~FG 130 (167)
..+ ++|..+-..-.+ ...+++|++|++.+.. ++. ....+++||+|=
T Consensus 239 ~~l-~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 239 IHL-EPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEE-CTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred EEE-CCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 344 777766333233 4889999999999975 332 367899999983
No 111
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=82.01 E-value=5.1 Score=24.76 Aligned_cols=52 Identities=19% Similarity=0.416 Sum_probs=35.3
Q ss_pred CCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeH
Q psy7149 100 LDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQ 158 (167)
Q Consensus 100 ~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~ 158 (167)
...++++++|++.+..++. ...+++||++= +=.+.++.... .++|.++.++.
T Consensus 50 ~~e~~~v~~G~~~~~~~~~-~~~l~~Gd~~~---ip~~~~H~~~~---~~~~~~l~i~~ 101 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRDQ-NITLQAGEMYV---IPKGVEHKPMA---KEECKIMIIEP 101 (102)
T ss_dssp CCEEEEEEESEEEEECSSC-EEEEETTEEEE---ECTTCCBEEEE---EEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEECCE-EEEEcCCCEEE---ECCCCeEeeEc---CCCCEEEEEEc
Confidence 3789999999999977654 56789998762 12344444333 35777887753
No 112
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=81.77 E-value=3.5 Score=31.93 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=40.9
Q ss_pred EEEecCCCCCeEEEEEEeEEEEEE-cCc--eeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHH
Q psy7149 92 IVMNDGEELDSWSVVINGCVEVEL-SDG--RSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQT 159 (167)
Q Consensus 92 ~I~~~Gd~~~~lyiI~~G~v~v~~-~~~--~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~ 159 (167)
..++ -+..+-+|++++|.+.+.. .++ ....+++|++| ++.......-+ |..+|..+.|.+.
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemf----llP~gv~HsP~--r~~et~gLviE~~ 107 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIF----LLPARVPHSPQ--RFANTVGLVVERR 107 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEE----EECTTCCEEEE--ECTTCEEEEEEEC
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEE----EeCCCCCcCCc--ccCCeEEEEEeec
Confidence 5566 5678899999999999854 323 24568999888 45433333333 4678888888653
No 113
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=81.65 E-value=12 Score=28.33 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=43.0
Q ss_pred eEEccCCcEEEe-cCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEec-CceEEEEE
Q psy7149 84 AVVEKAGTIVMN-DGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRC-DDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~ge~I~~-~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~-~~~~ll~i 156 (167)
..+ ++|..+-. .-.....+++|++|++.+..++. ...+++||++=- =.+.++.... ... +++.++.+
T Consensus 187 ~~l-~pg~~~~~~H~H~~~E~~yVl~G~~~~~i~~~-~~~l~~GD~i~i---~~~~~H~~~n-~~~~~~~~~l~~ 255 (274)
T 1sef_A 187 LSF-EPGASHAYIETHVQEHGAYLISGQGMYNLDNE-WYPVEKGDYIFM---SAYVPQAAYA-VGREEPLMYVYS 255 (274)
T ss_dssp EEE-CTTCBCSSCBCCSCCEEEEEEECEEEEEETTE-EEEEETTCEEEE---CTTCCEEEEE-ECSSSCEEEEEE
T ss_pred EEE-CCCCccCcceeccCeEEEEEEeCEEEEEECCE-EEEECCCCEEEE---CCCCCEEEEe-CCCCCCEEEEEE
Confidence 345 77776533 33456788999999999987654 568999998822 2355555444 233 45555554
No 114
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=80.88 E-value=4 Score=31.23 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=40.6
Q ss_pred cCCcEEE--ecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEe
Q psy7149 88 KAGTIVM--NDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157 (167)
Q Consensus 88 ~~ge~I~--~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~ 157 (167)
++|...- ......+.+++|++|++.+..++. ...|++||++=-- .+.++.... ...+++.++.+-
T Consensus 76 ~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~-~~~L~~GD~i~ip---~~~~H~~~N-~g~~~~~~l~v~ 142 (278)
T 1sq4_A 76 APNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQ-VHAMQPGGYAFIP---PGADYKVRN-TTGQHTRFHWIR 142 (278)
T ss_dssp EEEEEESSCCCCTTEEEEEEEEESCEEEEESSC-EEEECTTEEEEEC---TTCCEEEEC-CSSSCEEEEEEE
T ss_pred CCCCccCCCCcCCCceEEEEEEeCEEEEEECCE-EEEECCCCEEEEC---CCCcEEEEE-CCCCCEEEEEEE
Confidence 6776651 122346789999999999988754 5689999987322 344444333 233456666553
No 115
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=80.42 E-value=3.2 Score=27.47 Aligned_cols=50 Identities=26% Similarity=0.209 Sum_probs=33.9
Q ss_pred CCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEE
Q psy7149 100 LDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFV 154 (167)
Q Consensus 100 ~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll 154 (167)
...+++|++|.+.+..+++....+++||++=- =.+.++.... . .+++.++
T Consensus 64 ~~E~~~vl~G~~~~~~~~~~~~~l~~Gd~~~i---p~g~~H~~~~-~-~~~~~~l 113 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYEDIGAVMLEAGGSAFQ---PPGVRHRELR-H-SDDLEVL 113 (134)
T ss_dssp SCEEEEEEESEEEEEETTTEEEEEETTCEEEC---CTTCCEEEEE-E-CTTCEEE
T ss_pred CcEEEEEEeCEEEEEECCcEEEEecCCCEEEE---CCCCcEEeEe-C-CCCeEEE
Confidence 37899999999999887745678999998722 2345554443 2 2345665
No 116
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=79.73 E-value=6.8 Score=28.03 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=33.5
Q ss_pred CeEEEEEEeEEEEEEcCce----eEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 101 DSWSVVINGCVEVELSDGR----SQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 101 ~~lyiI~~G~v~v~~~~~~----~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+|+|++|++.+..++.. ...+++||++= +-.+.++.... ...+++.++.+
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~---ip~g~~H~~~N-~g~~~~~~l~v 152 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVY---VPPYWAHRTVN-IGDEPFIFLAI 152 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEEEEEECTTCEEE---ECTTCEEEEEE-CSSSCEEEEEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEE---ECCCCeEEEEE-CCcccEEEEEE
Confidence 5899999999999775432 46799999872 22344444333 23445666555
No 117
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=79.62 E-value=1.6 Score=35.47 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=34.1
Q ss_pred ceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCee
Q psy7149 82 VFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSF 129 (167)
Q Consensus 82 ~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~F 129 (167)
.+..+ .+|+.+-..-.....+|+|++|+-..+.-++....+++||+|
T Consensus 126 ~~~~l-~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~~~~~~GD~i 172 (394)
T 3bu7_A 126 GIQTM-KAGERAGAHRHAASALRFIMEGSGAYTIVDGHKVELGANDFV 172 (394)
T ss_dssp EEEEE-CTTCBCCCEEESSCEEEEEEECSCEEEEETTEEEEECTTCEE
T ss_pred EEEEE-CCCCCcCCccCCcceEEEEEEeeEEEEEECCEEEEEcCCCEE
Confidence 34455 788777544445568999999998665556667789999988
No 118
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=79.11 E-value=13 Score=28.99 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=41.5
Q ss_pred eEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEE---cC-ceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 84 AVVEKAGTIVM-NDGEELDSWSVVINGCVEVEL---SD-GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 84 ~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~---~~-~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
... .+|...- +.......+++|++|++.+.. ++ .....+++||++=- =.+.++.... ...++|.++.+
T Consensus 57 ~~l-~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~i---p~g~~H~~~n-~~~~~~~~l~v 129 (361)
T 2vqa_A 57 MSL-EPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYF---PRGWGHSIEG-IGPDTAKFLLV 129 (361)
T ss_dssp EEE-CTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEE---CTTCEEEEEE-CSSSCEEEEEE
T ss_pred EEE-cCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEE---CCCCeEEEEe-CCCCCEEEEEE
Confidence 344 6777653 334337899999999999976 32 25678999998722 1344443333 22246666654
No 119
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=77.75 E-value=3.4 Score=31.15 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=26.6
Q ss_pred CCeEEEEEEeEEEEEEcCceeEEecCCCeeee
Q psy7149 100 LDSWSVVINGCVEVELSDGRSQMLQVGDSFGI 131 (167)
Q Consensus 100 ~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe 131 (167)
.+-+..|++|++.+...++....+++||.|--
T Consensus 186 ~~E~~~ILeG~v~lt~~~G~~~~~~aGD~~~~ 217 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLENGSSLTVNTGDTVFV 217 (238)
T ss_dssp SCEEEEEEECCEEEEETTSCEEEECTTCEEEE
T ss_pred CCEEEEEEEeEEEEEeCCCCEEEECCCCEEEE
Confidence 34677888999999988887888999999844
No 120
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=77.67 E-value=13 Score=29.45 Aligned_cols=68 Identities=10% Similarity=0.008 Sum_probs=42.6
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHH
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYY 162 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~ 162 (167)
++|...-..-.+...+|+|++|+..+..++ ....+++||+|=--+ +..+... +.+++.++++.-.-+.
T Consensus 276 ~pG~~~~~H~h~~~ev~~v~~G~g~~~v~~-~~~~~~~GD~~~vP~---~~~H~~~---n~e~~~l~~~~d~p~~ 343 (354)
T 2d40_A 276 PKGFASRVARTTDSTIYHVVEGSGQVIIGN-ETFSFSAKDIFVVPT---WHGVSFQ---TTQDSVLFSFSDRPVQ 343 (354)
T ss_dssp CTTCBCCCBEESSCEEEEEEEEEEEEEETT-EEEEEETTCEEEECT---TCCEEEE---EEEEEEEEEEESHHHH
T ss_pred CCCCCCCceecCCcEEEEEEeCeEEEEECC-EEEEEcCCCEEEECC---CCeEEEE---eCCCEEEEEEcCHHHH
Confidence 444433222234558999999999998754 667899999984332 3333322 2367788888655443
No 121
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=77.13 E-value=12 Score=30.10 Aligned_cols=70 Identities=9% Similarity=0.065 Sum_probs=43.8
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEe
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~ 157 (167)
+..+ .+|+.+-..-.....+|+|++|+-....-++....+++||+|=-- .+..+.... ...+++.++.+.
T Consensus 107 ~~~l-~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~~~~~~~GD~v~iP---~g~~H~~~N-~gde~l~~l~v~ 176 (368)
T 3nw4_A 107 IQYL-GPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTP---GWCFHGHMN-DTDQPMAWIDGL 176 (368)
T ss_dssp EEEE-CTTCEEEEEEESSCEEEECSSCEEEEEEETTEEEEEETTCEEEEC---TTCCEEEEE-CSSSCEEEEEEE
T ss_pred EEEE-CCCCccCceecccceEEEEEecceEEEEECCEEEEEeCCCEEEEC---CCCcEEeEe-CCCCCeEEEEec
Confidence 3455 888877554445679999999997533445567788999998221 334444333 344556555443
No 122
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=76.65 E-value=5.6 Score=30.14 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=40.9
Q ss_pred eEEccCCcEEEec-C-CCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEe
Q psy7149 84 AVVEKAGTIVMND-G-EELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157 (167)
Q Consensus 84 ~~~~~~ge~I~~~-G-d~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~ 157 (167)
..+ ++|...-.. . ...+.+++|++|++.+..++. ...|++||++=-- .+.++.... ...++|.++.+.
T Consensus 67 ~~l-~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~-~~~L~~GD~~~~~---~~~~H~~~N-~~~~~~~~l~v~ 136 (274)
T 1sef_A 67 ATF-HKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQE-THELEAGGYAYFT---PEMKMYLAN-AQEADTEVFLYK 136 (274)
T ss_dssp EEE-EEEEEECSCSSBTTEEEEEEEEESEEEEECSSC-EEEEETTEEEEEC---TTSCCEEEE-SSSSCEEEEEEE
T ss_pred EEE-CCCCcCCCCCCCCCceEEEEEEEeEEEEEECCE-EEEECCCCEEEEC---CCCCEEEEe-CCCCCEEEEEEE
Confidence 344 666544322 1 124578899999999987654 5689999987432 344544433 233456665553
No 123
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=74.79 E-value=11 Score=28.20 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=40.3
Q ss_pred ceeEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEec-CceEEEEE
Q psy7149 82 VFAVVEKAGTIVM-NDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRC-DDCQFVCI 156 (167)
Q Consensus 82 ~~~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~-~~~~ll~i 156 (167)
....+ ++|..+- +.......+++|++|++.+..++ ....+++||++=-- .+.++.... ... +++.++.+
T Consensus 182 ~~~~~-~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~-~~~~l~~GD~i~~~---~~~~H~~~n-~g~~~~~~~l~~ 252 (261)
T 1rc6_A 182 HILSF-APGASHGYIETHVQEHGAYILSGQGVYNLDN-NWIPVKKGDYIFMG---AYSLQAGYG-VGRGEAFSYIYS 252 (261)
T ss_dssp EEEEE-CTTCCBEEEEEESSCEEEEEEESEEEEESSS-CEEEEETTCEEEEC---SSEEEEEEE-C----CEEEEEE
T ss_pred EEEEE-CCCCccCcccCCCceEEEEEEEeEEEEEECC-EEEEeCCCCEEEEC---CCCcEEeEe-CCCCcCEEEEEE
Confidence 34455 7776543 33234567999999999998765 45689999987222 334443333 222 44555544
No 124
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=73.12 E-value=19 Score=28.85 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=46.7
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeHHHHHHHh
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRIQ 165 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~~~f~~ll 165 (167)
++|+..-..-.....+|.|++|+-.+..++. ....++||+|--- .+.++ +. .+.++|.++.++-.-+.+-|
T Consensus 287 ~pG~~t~~hRht~s~Vy~V~eG~G~~~I~~~-~~~w~~gD~fvvP---~w~~h--~~-~n~~~a~Lf~~~D~Pl~~~L 357 (368)
T 3nw4_A 287 RAGTETATRNEVGSTVFQVFEGAGAVVMNGE-TTKLEKGDMFVVP---SWVPW--SL-QAETQFDLFRFSDAPIMEAL 357 (368)
T ss_dssp CTTCBCCCEEESSCEEEEEEESCEEEEETTE-EEEECTTCEEEEC---TTCCE--EE-EESSSEEEEEEESHHHHHHT
T ss_pred CCCCccCCeeccccEEEEEEeCcEEEEECCE-EEEecCCCEEEEC---CCCcE--EE-EeCCCEEEEEEeCHHHHHHh
Confidence 4444432222446799999999988877654 5678999999433 23333 33 35689999999877665543
No 125
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=72.78 E-value=9.1 Score=29.18 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=35.0
Q ss_pred cceeEEccCCcEEEe-cCCCCCeEEEEEEeEEEEEEcCceeEEecCCCee
Q psy7149 81 MVFAVVEKAGTIVMN-DGEELDSWSVVINGCVEVELSDGRSQMLQVGDSF 129 (167)
Q Consensus 81 ~~~~~~~~~ge~I~~-~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~F 129 (167)
+....+ ++|..|-. +-..-.+.|+|++|+..+..+ +....+++||++
T Consensus 193 ~~~~~l-~pG~~i~~~~~h~~e~~~~il~G~~~~~~~-~~~~~v~~GD~~ 240 (278)
T 1sq4_A 193 VNIVNF-EPGGVIPFAETHVMEHGLYVLEGKAVYRLN-QDWVEVEAGDFM 240 (278)
T ss_dssp EEEEEE-CSSSEESCCCCCSEEEEEEEEECEEEEEET-TEEEEEETTCEE
T ss_pred EEEEEE-CCCCCcCCCCCCCccEEEEEEeCEEEEEEC-CEEEEeCCCCEE
Confidence 334455 89988853 555556889999999998775 446789999987
No 126
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=71.01 E-value=17 Score=29.90 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=33.9
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEE---cCceeEEecCCCeee
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVEL---SDGRSQMLQVGDSFG 130 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~---~~~~~~~l~~Gd~FG 130 (167)
..+ ++|..+-......+.+++|++|++.+.. ++.....+++||+|=
T Consensus 91 ~~l-~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~ 139 (445)
T 2cav_A 91 YCS-KPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 139 (445)
T ss_dssp EEE-CSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEE-CCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEE
Confidence 345 7887665445568899999999998853 224677899999984
No 127
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=70.80 E-value=11 Score=29.03 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=40.5
Q ss_pred cCCcEEE-ecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 88 KAGTIVM-NDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 88 ~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
.+|...- +.......+++|++|++.+..++ ....+++||++=- =.+.++.... ..++|.++.+
T Consensus 54 ~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~-~~~~l~~Gd~~~~---p~~~~H~~~n--~~~~~~~~~~ 117 (337)
T 1y3t_A 54 GKGDAFPLHVHKDTHEGILVLDGKLELTLDG-ERYLLISGDYANI---PAGTPHSYRM--QSHRTRLVSY 117 (337)
T ss_dssp CTTCEEEEEECTTCCEEEEEEESCEEEEETT-EEEEECTTCEEEE---CTTCCEEEEE--CSTTEEEEEE
T ss_pred CCCCCCCceeCCCceEEEEEEECEEEEEECC-EEEEECCCCEEEE---CCCCcEEEEE--CCCCeEEEEE
Confidence 7777653 33433788999999999998754 4578999998722 2345554433 2234655544
No 128
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=68.68 E-value=6 Score=32.24 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=34.1
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEE---cCceeEEecCCCee
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL---SDGRSQMLQVGDSF 129 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~---~~~~~~~l~~Gd~F 129 (167)
...+ ++|..+.......+.+++|++|+..+.. ++.....+++||++
T Consensus 53 ~~~l-~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~ 101 (416)
T 1uij_A 53 QFQS-KPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQ 101 (416)
T ss_dssp EEEE-CTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEE
T ss_pred EEEe-ccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEE
Confidence 3445 7888665445567899999999999854 34556778999988
No 129
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=68.46 E-value=37 Score=26.19 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=46.4
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEeH
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQ 158 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~~ 158 (167)
...| .+|+.+..+... +.|+.+++|+..|+.++. ...|++||.. .+-.+. .++. .+.++|.+|.|..
T Consensus 211 V~l~-G~Ges~~~~~~~-d~wiWqLEGss~Vt~~~q-~~~L~~~DsL---LIpa~~--~y~~-~r~~gsv~L~I~~ 277 (286)
T 2qnk_A 211 VIAY-GQGSSEGLRQNV-DVWLWQLEGSSVVTMGGR-RLSLAPDDSL---LVLAGT--SYAW-ERTQGSVALSVTQ 277 (286)
T ss_dssp EEEE-CSEEEEECCCSS-CEEEEEEESCEEEEETTE-EEEECTTEEE---EECTTC--CEEE-EECTTCEEEEEEE
T ss_pred EEEE-cCCccccccCcC-cEEEEEEcCceEEEECCe-EEeccCCCEE---EecCCC--eEEE-EecCCeEEEEEEE
Confidence 3446 888888887776 999999999998766544 5668888765 112333 3344 4568898888854
No 130
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=66.77 E-value=8.9 Score=28.85 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=25.7
Q ss_pred CCCCeEEEEEEeEEEEEEcCceeEEecCCCeee
Q psy7149 98 EELDSWSVVINGCVEVELSDGRSQMLQVGDSFG 130 (167)
Q Consensus 98 d~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FG 130 (167)
-+.+-+.+|++|++.|.. ++.-..+++||.|-
T Consensus 63 ~p~dE~~~VleG~~~lt~-~g~~~~~~~Gd~~~ 94 (238)
T 3myx_A 63 YPYTEMLVMHRGSVTLTS-GTDSVTLSTGESAV 94 (238)
T ss_dssp CSSEEEEEEEESEEEEEE-TTEEEEEETTCEEE
T ss_pred CCCcEEEEEEEeEEEEEC-CCeEEEEcCCCEEE
Confidence 356788999999999987 56666789999873
No 131
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=65.88 E-value=14 Score=29.19 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=31.7
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--Cce--eEEecCCCee
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--DGR--SQMLQVGDSF 129 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~~~--~~~l~~Gd~F 129 (167)
..+ .+|..+-..-.+...+++|++|++.+... ++. ...+++||++
T Consensus 84 ~~l-~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~ 132 (385)
T 1j58_A 84 MRL-KPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLW 132 (385)
T ss_dssp EEE-CTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE
T ss_pred EEE-CCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEE
Confidence 444 78876633333478999999999999762 233 4589999987
No 132
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=65.11 E-value=14 Score=28.40 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=33.3
Q ss_pred CCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 100 LDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 100 ~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
...+++|++|++.+..++ ....+++||+|=- =.+.++.... .. +++.++.+
T Consensus 239 ~~e~~~vl~G~~~~~i~~-~~~~l~~GD~~~i---p~~~~H~~~n-~~-~~~~~l~v 289 (337)
T 1y3t_A 239 HTETFYCLEGQMTMWTDG-QEIQLNPGDFLHV---PANTVHSYRL-DS-HYTKMVGV 289 (337)
T ss_dssp CEEEEEEEESCEEEEETT-EEEEECTTCEEEE---CTTCCEEEEE-CS-SSEEEEEE
T ss_pred CcEEEEEEeCEEEEEECC-EEEEECCCCEEEE---CCCCeEEEEE-CC-CCeEEEEE
Confidence 578999999999998765 4578999998832 2344444333 22 24555544
No 133
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=63.12 E-value=10 Score=31.06 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=34.3
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEE--c-CceeEEecCCCeee
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL--S-DGRSQMLQVGDSFG 130 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~--~-~~~~~~l~~Gd~FG 130 (167)
...+ ++|..+-......+.+++|++|+..+.. . ......+++||+|=
T Consensus 65 ~~~l-~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~ 114 (434)
T 2ea7_A 65 EFKS-KPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQK 114 (434)
T ss_dssp EEEE-CTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEE
T ss_pred EEEe-cCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEE
Confidence 4455 7888775555568899999999998854 2 24567788998873
No 134
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=63.12 E-value=2.5 Score=26.94 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=38.0
Q ss_pred cCCcEEEecCCC-CCeEEEEEEeEEEEEEcCc--eeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 88 KAGTIVMNDGEE-LDSWSVVINGCVEVELSDG--RSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 88 ~~ge~I~~~Gd~-~~~lyiI~~G~v~v~~~~~--~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
+||.-+-.+-.+ ..-+|+|.+|.+.+..+++ ....+.+|+.+=.- .|..+.... .-.+++.++.+
T Consensus 25 ~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip---~G~~H~~~N-~g~~pl~~IeV 92 (98)
T 3lag_A 25 PPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARK---AGVQHDVRN-ESTAEIVFLEI 92 (98)
T ss_dssp CTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEEC---TTCEEEEBC-CSSSCEEEEEE
T ss_pred CCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEEc---CCCcEECEE-CCCCeEEEEEE
Confidence 788877544344 4467788899999987654 34457888876221 233343332 23445655555
No 135
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=62.89 E-value=7.9 Score=27.09 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=42.8
Q ss_pred hcceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEec----CceEEEE
Q psy7149 80 VMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRC----DDCQFVC 155 (167)
Q Consensus 80 ~~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~----~~~~ll~ 155 (167)
.+...++ ++|..+-.-..++...++|++|+..... .+ ..+.+|+++=+-+ +..+ +. .+. ++|.++.
T Consensus 43 ~v~lvr~-~pG~~~p~H~H~g~ee~~VL~G~~~~~e-~~--~~~~~Gd~~~~P~---g~~H--~~-~~~~~~~e~~~~~~ 112 (159)
T 3ebr_A 43 TITLLKA-PAGMEMPRHHHTGTVIVYTVQGSWRYKE-HD--WVAHAGSVVYETA---STRH--TP-QSAYAEGPDIITFN 112 (159)
T ss_dssp EEEEEEE-CSSCBCCCEEESSCEEEEEEESCEEETT-SS--CCBCTTCEEEECS---SEEE--CE-EESSSSSSCEEEEE
T ss_pred EEEEEEE-CCCCCcccccCCCCEEEEEEEeEEEEeC-CC--eEECCCeEEEECC---CCcc--ee-EeCCCCCCCEEEEE
Confidence 4455667 8998887666677888899999988632 22 3678888864432 3222 22 233 5677666
Q ss_pred E
Q psy7149 156 I 156 (167)
Q Consensus 156 i 156 (167)
+
T Consensus 113 ~ 113 (159)
T 3ebr_A 113 I 113 (159)
T ss_dssp E
T ss_pred E
Confidence 3
No 136
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=62.07 E-value=11 Score=24.00 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=36.6
Q ss_pred cCCcEEEecCCCCC-eEEEEEEeEEEEEEcCce--eEEecCCCeeeecccccCCceeeEEEEecCceEEEEEe
Q psy7149 88 KAGTIVMNDGEELD-SWSVVINGCVEVELSDGR--SQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~-~lyiI~~G~v~v~~~~~~--~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~ 157 (167)
+||..+-.--.+.+ .++++.+|.+.+...++. ...+++|+++-.-+ +.++.... ...+++.++.+.
T Consensus 25 ~PG~~~~~H~H~~~~~iv~v~~G~~~~~~~dG~~~~~~l~aGd~~~~p~---G~~H~~~N-~g~~~l~fi~vE 93 (98)
T 2ozi_A 25 PPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKA---GVQHDVRN-ESTAEIVFLEIE 93 (98)
T ss_dssp CTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEECT---TCEEEEEE-CSSSCEEEEEEE
T ss_pred CCCCccCcEeCCCCEEEEEEeeEEEEEEeCCCcEEEEEECCCCEEEECC---CCceeCEE-CCCCCEEEEEEE
Confidence 77776622212233 222346999999775553 56799999886533 34444333 334456666653
No 137
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=61.99 E-value=64 Score=26.80 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=42.2
Q ss_pred cceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C---------------------------ceeEEecCCCeeee
Q psy7149 81 MVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D---------------------------GRSQMLQVGDSFGI 131 (167)
Q Consensus 81 ~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~---------------------------~~~~~l~~Gd~FGe 131 (167)
+....+ ++|.++...-.....+++|++|+..+... + ..+..+.+||+|--
T Consensus 47 ~~r~~i-~pggl~~Ph~~~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~~~~~~~d~~qkv~~l~~GDvi~i 125 (493)
T 2d5f_A 47 VSKRTL-NRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVI 125 (493)
T ss_dssp EEEEEE-CTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC-------------CSEEESCEEEEETTEEEEE
T ss_pred EEEEEe-CCCcEeCceecCCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccccccccccceEEEecCCCEEEE
Confidence 344455 88887754444567889999999888431 1 24678999999843
Q ss_pred cccccCCceeeEEEEecCceEEEEE
Q psy7149 132 LPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 132 ~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
=.|.++.... .-.++..++++
T Consensus 126 ---PaG~~h~~~N-~g~~~l~~v~~ 146 (493)
T 2d5f_A 126 ---PPGVPYWTYN-TGDEPVVAISL 146 (493)
T ss_dssp ---CTTCCEEEEE-CSSSCEEEEEE
T ss_pred ---CCCCcEEEEe-CCCCCEEEEEE
Confidence 2454443333 22334444443
No 138
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=60.03 E-value=19 Score=28.34 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=25.8
Q ss_pred cCCCCCeEEEEEEeEEEEEEcC----ceeEEecCCCee
Q psy7149 96 DGEELDSWSVVINGCVEVELSD----GRSQMLQVGDSF 129 (167)
Q Consensus 96 ~Gd~~~~lyiI~~G~v~v~~~~----~~~~~l~~Gd~F 129 (167)
......-+++|++|++.+..++ .....+++||++
T Consensus 67 ~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v 104 (350)
T 1juh_A 67 IHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYG 104 (350)
T ss_dssp ECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEE
T ss_pred cCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEE
Confidence 3334668888999999997654 156789999986
No 139
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=60.03 E-value=14 Score=26.53 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=32.6
Q ss_pred hhcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCCCeEEEEE
Q psy7149 60 TQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVI 107 (167)
Q Consensus 60 L~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~~~lyiI~ 107 (167)
.-..|+|.+++-.+-.++... . . |+.|+++...++++-+..
T Consensus 11 ~I~HP~F~n~s~~qAe~~L~~-----~-~-G~~liRPSsk~~~ltit~ 51 (178)
T 2xp1_A 11 FYKHPLFKNFNVTESENYLRS-----S-T-DDFLIRKGSRHGYCVLVI 51 (178)
T ss_dssp GGGSTTEECCCHHHHHHHHHH-----S-S-CCEEEEECSSTTEEEEEE
T ss_pred eccCCCcCCCCHHHHHHHHhc-----C-C-CCEEEeecCCCCcEEEEE
Confidence 346899999999998888776 2 4 999999998877755544
No 140
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=58.89 E-value=33 Score=27.69 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=33.3
Q ss_pred eeEEccCCcEEEecCCCCCeEEEEEEeEEEEEE---cCceeEEecCCCe
Q psy7149 83 FAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL---SDGRSQMLQVGDS 128 (167)
Q Consensus 83 ~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~---~~~~~~~l~~Gd~ 128 (167)
...+ ++|..+...-..++.+++|++|+..+.. ++.....+.+||+
T Consensus 56 ~~~l-~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv 103 (397)
T 2phl_A 56 EFRS-KPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDN 103 (397)
T ss_dssp EEEE-CSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSC
T ss_pred EEEE-CCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCc
Confidence 3445 7888765555578899999999998853 3345678899998
No 141
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=57.38 E-value=69 Score=26.34 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=34.3
Q ss_pred cceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEE--cC-----------------------ceeEEecCCCeeee
Q psy7149 81 MVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL--SD-----------------------GRSQMLQVGDSFGI 131 (167)
Q Consensus 81 ~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~--~~-----------------------~~~~~l~~Gd~FGe 131 (167)
+....+ ++|.++...-.....+++|++|+..+.. .+ ..+..+.+||+|--
T Consensus 65 ~~r~~i-~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv~~i 139 (459)
T 2e9q_A 65 MIRHTI-RPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVV 139 (459)
T ss_dssp EEEEEE-CTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEEEEE
T ss_pred EEEEEE-cCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCEEEE
Confidence 333455 8888774443458899999999998853 11 13668999999843
No 142
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=55.53 E-value=37 Score=25.12 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=41.4
Q ss_pred CCCcccccccCCcccccccccccHHHHHHHHhcC-CCCCCC--------HHHHHHHHHHhhcChhhhcCCHHHHHHHhhh
Q psy7149 10 DDASSNLVQSNGFVSSSLFQSLIVKDRVRECLEK-DPSERT--------DDDIEQLLDFTQHLKAFTNMTLAVRKALCGV 80 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~l~k-~p~~R~--------~~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~ 80 (167)
.|+.+...|.+|++-.+.+-..+.- +.. .|...+ ..++..+.++.+++|.|..|+.+++..|.+.
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~f~~~------~p~~~p~~~~~~~~~e~a~~~L~~~VewaK~iP~F~~L~~~DQ~~LLk~ 74 (249)
T 3p0u_A 1 RDQSTPIIEVEGPLLSDTHVTFKLT------MPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRA 74 (249)
T ss_dssp CCCSSCSSSSCCCCCCSCCCCSTTC------CCCCCCCCSCSSCHHHHHHHHHHHHHHHHHTCTTTGGGCHHHHHHHHHT
T ss_pred CCCcccccccCCccccccccceecc------CCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHH
Confidence 3677888887777744443222111 111 111111 2334457889999999999999999888776
Q ss_pred cc
Q psy7149 81 MV 82 (167)
Q Consensus 81 ~~ 82 (167)
..
T Consensus 75 ~w 76 (249)
T 3p0u_A 75 CW 76 (249)
T ss_dssp TH
T ss_pred HH
Confidence 64
No 143
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=54.57 E-value=71 Score=26.41 Aligned_cols=49 Identities=6% Similarity=-0.039 Sum_probs=33.8
Q ss_pred cceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEc--C------------------------ceeEEecCCCeee
Q psy7149 81 MVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS--D------------------------GRSQMLQVGDSFG 130 (167)
Q Consensus 81 ~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~--~------------------------~~~~~l~~Gd~FG 130 (167)
+....+ ++|.++...-.....+++|++|+..+..- + ..+..+.+||+|-
T Consensus 50 ~~r~~l-~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk~~~l~~GDvi~ 124 (476)
T 1fxz_A 50 LSRCTL-NRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIA 124 (476)
T ss_dssp EEEEEE-CTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEE
T ss_pred EEEEEE-cCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccccccccccccccccccceEEEEeCCCEEE
Confidence 333455 88887754445578999999999877431 1 1367899999984
No 144
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=54.03 E-value=70 Score=24.29 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=43.8
Q ss_pred cceeEEccCCcEE-EecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceE
Q psy7149 81 MVFAVVEKAGTIV-MNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQ 152 (167)
Q Consensus 81 ~~~~~~~~~ge~I-~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ 152 (167)
+..-.+ ++|..+ +.+-..-.+-++|++|+..+..++. ...+++||++=-. .+.++.... .-.++++
T Consensus 188 ~~~~t~-~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~~-~~~V~~GD~i~~~---~~~~h~~~n-~G~e~~~ 254 (266)
T 4e2q_A 188 IHTMDF-QPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDN-WYPVQAGDVIWMA---PFVPQWYAA-LGKTRSR 254 (266)
T ss_dssp EEEEEE-CTTCBCSSCCCCSCCEEEEEEECEEEEEETTE-EEEEETTCEEEEC---TTCCEEEEE-ESSSCEE
T ss_pred EEEEEE-CCCcCcCCceEcccceEEEEEeceEEEEECCE-EEEecCCCEEEEC---CCCcEEEEe-CCCCCEE
Confidence 344456 899988 4577777799999999988876554 5678999987322 344554444 3334543
No 145
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=52.46 E-value=46 Score=27.71 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=34.8
Q ss_pred HHHhhhcceeEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEEcC---cee--EEecCCCee
Q psy7149 75 KALCGVMVFAVVEKAGTIVM-NDGEELDSWSVVINGCVEVELSD---GRS--QMLQVGDSF 129 (167)
Q Consensus 75 ~~l~~~~~~~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~~~---~~~--~~l~~Gd~F 129 (167)
..+--.+....+ .+|..+- +-...++.+++|++|++.+...+ ..+ ..+++||+|
T Consensus 363 ~~lgls~a~v~l-~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 363 RQFGLSAQYVVL-YRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLL 422 (493)
T ss_dssp HHHTCEEEEEEE-CTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccceEEEEEEc-cCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEE
Confidence 343334444555 7777553 33444789999999999986522 222 459999988
No 146
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=52.20 E-value=21 Score=29.04 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=32.2
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEE---cCceeEEecCCCeee
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVEL---SDGRSQMLQVGDSFG 130 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~---~~~~~~~l~~Gd~FG 130 (167)
.+|.++....-.++.+++|++|+..+.. ++.....+.+||+|-
T Consensus 52 ~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~ 97 (418)
T 3s7i_A 52 KPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHALR 97 (418)
T ss_dssp CTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEE
T ss_pred cCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEE
Confidence 7777776555568889999999988843 334567888999883
No 147
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=51.61 E-value=40 Score=24.82 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=41.4
Q ss_pred cceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEE
Q psy7149 81 MVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCI 156 (167)
Q Consensus 81 ~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i 156 (167)
..+.++ ++|..+-....++....+|++|...- + -..+.+|+++=.- .+..+ +. .+.+.|.++..
T Consensus 45 ~~lvr~-~pG~~~p~H~H~g~Ee~~VL~G~f~d--~---~~~~~~Gd~~~~P---~g~~H--~p-~a~~gc~~~vk 108 (223)
T 3o14_A 45 TSIVRY-APGSRFSAHTHDGGEEFIVLDGVFQD--E---HGDYPAGTYVRNP---PTTSH--VP-GSAEGCTIFVK 108 (223)
T ss_dssp EEEEEE-CTTEECCCEECTTCEEEEEEEEEEEE--T---TEEEETTEEEEEC---TTCEE--CC-EESSCEEEEEE
T ss_pred EEEEEE-CCCCCcccccCCCCEEEEEEEeEEEE--C---CeEECCCeEEEeC---CCCcc--cc-EeCCCCEEEEE
Confidence 346677 99988877667788889999999762 2 2367788775332 22222 22 23567877654
No 148
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=51.07 E-value=45 Score=27.94 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=34.5
Q ss_pred HHHhhhcceeEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEEcC---cee--EEecCCCee
Q psy7149 75 KALCGVMVFAVVEKAGTIVM-NDGEELDSWSVVINGCVEVELSD---GRS--QMLQVGDSF 129 (167)
Q Consensus 75 ~~l~~~~~~~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~~~---~~~--~~l~~Gd~F 129 (167)
..+--.+....+ .+|..+- +-.-.++.+++|++|++.+...+ ..+ ..+++||+|
T Consensus 368 ~~l~is~a~v~L-~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 368 RWLGLSAEYGNL-YRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHTCEEEEEEE-ETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccceEEEEEEEe-cCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 333334444555 7777653 33334789999999999986421 233 358999988
No 149
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=50.79 E-value=57 Score=27.48 Aligned_cols=55 Identities=20% Similarity=0.102 Sum_probs=36.5
Q ss_pred HHHHhhhcceeEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEE--cC-c--eeEEecCCCee
Q psy7149 74 RKALCGVMVFAVVEKAGTIVM-NDGEELDSWSVVINGCVEVEL--SD-G--RSQMLQVGDSF 129 (167)
Q Consensus 74 l~~l~~~~~~~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~--~~-~--~~~~l~~Gd~F 129 (167)
+..|--.+....+ .+|.++- +-.-.++.+++|++|++.|.. .+ . ....|.+||+|
T Consensus 389 L~~LgiS~a~v~L-~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 389 LRFLRLSAERGFF-YRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp HHHHTCEEEEEEE-CTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccCceeEEEEEe-ecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 3444334455566 7877763 334447899999999999854 22 2 35678999998
No 150
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=48.54 E-value=40 Score=27.87 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=31.1
Q ss_pred ceeEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEEcC---cee--EEecCCCee
Q psy7149 82 VFAVVEKAGTIVM-NDGEELDSWSVVINGCVEVELSD---GRS--QMLQVGDSF 129 (167)
Q Consensus 82 ~~~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~~~---~~~--~~l~~Gd~F 129 (167)
....+ .+|..+- +-.-.++.+++|++|++.+...+ ..+ ..+++||+|
T Consensus 341 ~~v~l-~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 341 EFGSL-RKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp EEEEE-CTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred EEEEe-cCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 33445 7777653 33333689999999999986522 222 358999988
No 151
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=48.48 E-value=30 Score=24.25 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=33.7
Q ss_pred cceeEEccCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeee
Q psy7149 81 MVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGI 131 (167)
Q Consensus 81 ~~~~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe 131 (167)
+...++ ++|..+-....++....+|++|+.... +.-...+++|+++=+
T Consensus 45 v~lvr~-~pG~~~p~H~H~g~ee~~VL~G~f~~~--~~~~~~~~aGd~~~~ 92 (165)
T 3cjx_A 45 VMRASF-APGLTLPLHFHTGTVHMYTISGCWYYT--EYPGQKQTAGCYLYE 92 (165)
T ss_dssp EEEEEE-CTTCBCCEEEESSCEEEEEEESEEEET--TCTTSCEETTEEEEE
T ss_pred EEEEEE-CCCCcCCcccCCCCEEEEEEEEEEEEC--CCceEEECCCeEEEe
Confidence 456677 899888777777888999999999862 211234567777644
No 152
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=48.05 E-value=72 Score=26.25 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=35.5
Q ss_pred HHHHhhhcceeEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEEc---Ccee--EEecCCCee
Q psy7149 74 RKALCGVMVFAVVEKAGTIVM-NDGEELDSWSVVINGCVEVELS---DGRS--QMLQVGDSF 129 (167)
Q Consensus 74 l~~l~~~~~~~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~~---~~~~--~~l~~Gd~F 129 (167)
+..+--.+....+ .+|.+.. +-.-.++.+++|++|++.|..- +..+ ..+.+||+|
T Consensus 317 L~~l~iS~a~v~l-~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~ 377 (459)
T 2e9q_A 317 LRQVRLSAERGVL-YSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVL 377 (459)
T ss_dssp HHHHTCEEEEEEE-CTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccccceEEEEe-eCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEE
Confidence 3434344445556 6776653 3444578999999999998542 2233 359999998
No 153
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=47.30 E-value=59 Score=23.11 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=30.4
Q ss_pred cCCcEEEecCCCC--------CeEEEEEEeEEEEEEcCcee--------------------EEecCCCeeeecccccCCc
Q psy7149 88 KAGTIVMNDGEEL--------DSWSVVINGCVEVELSDGRS--------------------QMLQVGDSFGILPTMEKLY 139 (167)
Q Consensus 88 ~~ge~I~~~Gd~~--------~~lyiI~~G~v~v~~~~~~~--------------------~~l~~Gd~FGe~all~~~~ 139 (167)
.+|+.+-..-.+. ..++ +++|.+.++..+... ..++||+.+=- -.+.+
T Consensus 61 ~pGQ~~P~H~H~~~~~~~gK~E~~i-vr~G~v~l~~~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvtI---ppg~~ 136 (175)
T 2y0o_A 61 FPGQTCPEHRHPPVDGQEGKQETFR-CRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTI---PPNTK 136 (175)
T ss_dssp CTTCEEEEEECCCCTTSCCCCEEEE-EEEEEEEEEESSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEEE---CTTCC
T ss_pred CCCCcCCceECCCCCCCCCCceeEE-EecCEEEEEECCccccCcceeccCCceeeecCCcEEEECCCCEEEE---CCCCc
Confidence 6666663332233 5565 889999998754322 47889988732 24444
Q ss_pred eee
Q psy7149 140 HEG 142 (167)
Q Consensus 140 r~~ 142 (167)
+..
T Consensus 137 H~f 139 (175)
T 2y0o_A 137 HWF 139 (175)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 154
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=46.49 E-value=91 Score=23.43 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=38.3
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCceeEEecCCCeeeecccccCCceeeEEEEecCceEEEEEe
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~i~ 157 (167)
++|+.+-.+-.....+.++++|++.|...+.....+.+||... +.+. ...++ .|.++++++.++
T Consensus 190 ~~g~~~~~~~~~~~~~l~v~~G~v~v~g~~~~~~~l~~gd~~~----l~~~-~~l~l-~a~~~a~~LL~d 253 (256)
T 2vec_A 190 DKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAF----IRDE-ANITL-VADSPLRALLID 253 (256)
T ss_dssp CTTCEEEEECSSSEEEEEEEESCEEEEETTEEEEEECTTCEEE----EESC-SEEEE-EESSSEEEEEEE
T ss_pred CCCCEEEEecCCCeEEEEEEECEEEECCccccceEECCCCEEE----ECCC-CeEEE-EeCCCCEEEEEE
Confidence 6777664433333355667899999854222233577877553 2222 23455 567888888875
No 155
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=45.72 E-value=27 Score=24.81 Aligned_cols=30 Identities=10% Similarity=0.334 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
.+..+.++.+++|.|..|+.+++..|.+..
T Consensus 32 ~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~ 61 (199)
T 3cqv_A 32 AVKEVVEFAKRIPGFRDLSQHDQVNLLKAG 61 (199)
T ss_dssp HHHHHHHHHHTSGGGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChhhCCHHHHHHHHHHh
Confidence 445678999999999999999988887664
No 156
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=45.10 E-value=21 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 51 DDIEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 51 ~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
..++.+.++-+++|.|..|+.+++-.|.+..
T Consensus 87 ~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~ 117 (273)
T 3vi8_A 87 ETVTELTEFAKAIPGFANLDLNDQVTLLKYG 117 (273)
T ss_dssp HHHHHHHHHGGGSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcCcccCCHHHHHHHHHHH
Confidence 4466788999999999999999988887754
No 157
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=42.91 E-value=15 Score=25.75 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=24.7
Q ss_pred ecCCCCCeEEEEEE--eEEEEEEcCceeEEecCCCee
Q psy7149 95 NDGEELDSWSVVIN--GCVEVELSDGRSQMLQVGDSF 129 (167)
Q Consensus 95 ~~Gd~~~~lyiI~~--G~v~v~~~~~~~~~l~~Gd~F 129 (167)
+......-+|+|++ |+..+..++. ...+++||++
T Consensus 61 H~H~~~~E~~yVLe~~G~g~v~idge-~~~l~~GD~v 96 (157)
T 4h7l_A 61 HYHREHQEIYVVLDHAAHATIELNGQ-SYPLTKLLAI 96 (157)
T ss_dssp BBCSSCEEEEEEEEECTTCEEEETTE-EEECCTTEEE
T ss_pred eECCCCcEEEEEEecCcEEEEEECCE-EEEeCCCCEE
Confidence 33334557999999 9999987654 5678888876
No 158
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=41.21 E-value=39 Score=22.40 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=21.9
Q ss_pred CCCCCeEEEEEEeEEEEEEcCceeEEecCCCee
Q psy7149 97 GEELDSWSVVINGCVEVELSDGRSQMLQVGDSF 129 (167)
Q Consensus 97 Gd~~~~lyiI~~G~v~v~~~~~~~~~l~~Gd~F 129 (167)
+...-.+.+|++|+..+..++. ...+++||+|
T Consensus 35 ~h~~~~i~~v~~G~~~~~i~~~-~~~l~~Gd~~ 66 (164)
T 2arc_A 35 GMKGYILNLTIRGQGVVKNQGR-EFVCRPGDIL 66 (164)
T ss_dssp CCSSEEEEEEEEECEEEEETTE-EEEECTTCEE
T ss_pred CCCceEEEEEEEeEEEEEECCE-EEEecCCeEE
Confidence 3444567889999999977543 4456777665
No 159
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=41.08 E-value=31 Score=25.74 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=23.7
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++-+++|.|..|+.+++-.|.+..
T Consensus 54 l~~iVefAK~iPgF~~L~~~DQi~LLK~~ 82 (244)
T 3gyt_A 54 MRRLVKMAKRLGAFNEISEAGKFSLLKGG 82 (244)
T ss_dssp HHHHHHHHHTCGGGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcccCCHHHHHHHHHHH
Confidence 34578889999999999999888776554
No 160
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=40.98 E-value=44 Score=24.29 Aligned_cols=40 Identities=8% Similarity=0.064 Sum_probs=31.1
Q ss_pred hcChhhhcCCHHHHHHHhhhcceeEEccCCcEEEecCCCC-CeEEEE
Q psy7149 61 QHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEEL-DSWSVV 106 (167)
Q Consensus 61 ~~~~~F~~L~~~~l~~l~~~~~~~~~~~~ge~I~~~Gd~~-~~lyiI 106 (167)
-.+|.|.+++-.+..+..+. . ..|++|+++...+ +++.+.
T Consensus 6 I~HP~F~n~~~~qAe~~L~~-----~-~~Ge~iIRPSSkg~dhLtvT 46 (197)
T 3or8_A 6 INHPYYFPFNGKQAEDYLRS-----K-ERGDFVIRQSSRGDDHLAIT 46 (197)
T ss_dssp CCCTTEECCCHHHHHHHHTT-----S-CTTCEEEEECSSCTTEEEEE
T ss_pred cCCCCcCCCCHHHHHHHHhc-----C-CCCCEEEeeCCCCCCcEEEE
Confidence 46899999999988887764 2 7899999998874 555443
No 161
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=40.65 E-value=63 Score=22.47 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=44.7
Q ss_pred eeeCCCcccccccCCcccccccccc-----------cHHHHHHHHhcCCCCCCCHHHH-----HHHHHHhhcC------h
Q psy7149 7 IVFDDASSNLVQSNGFVSSSLFQSL-----------IVKDRVRECLEKDPSERTDDDI-----EQLLDFTQHL------K 64 (167)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~r~~l~k~p~~R~~~~~-----~~i~~~L~~~------~ 64 (167)
|.-|.|.-+-|.++....+...++. ...+.++.+|..||..-..+.. ..+.+.|.++ +
T Consensus 14 iDVD~~d~d~f~~~~~~~~~~~~p~~~qv~~lL~~g~~~~ALk~~L~~pP~~~k~q~~K~~~~~~Vl~VL~siK~sdI~~ 93 (151)
T 1k8k_G 14 VDVDEYDENKFVDEDDGGDGQAGPDEGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEK 93 (151)
T ss_dssp SCGGGGCTTSCCCCCCC----CCCCHHHHHHHHHTTCHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred cccccCCcccCChhhccCCCCCCCCHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 5567787777776665543333221 1126677889999964433222 2345555544 4
Q ss_pred hhhcCCHHHHHHHhhhcc
Q psy7149 65 AFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 65 ~F~~L~~~~l~~l~~~~~ 82 (167)
+++.|+++++..|.+.+.
T Consensus 94 ~v~~L~~e~~D~LMKYiY 111 (151)
T 1k8k_G 94 AVQSLDKNGVDLLMKYIY 111 (151)
T ss_dssp HHHTSCHHHHHHHHHHHH
T ss_pred HHHHhChhhhhHHHHHHH
Confidence 778899998888876543
No 162
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=39.95 E-value=30 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 77 ~l~~~VewAK~lP~F~~L~~~DQ~~LLk~~~ 107 (245)
T 3n00_A 77 AVREVVEFAKHIPGFRDLSQHDQVTLLKAGT 107 (245)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhhCCHHHHHHHHHHHH
Confidence 4566789999999999999999988876553
No 163
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=39.75 E-value=31 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 54 l~~~vewak~ip~F~~L~~~DQ~~LLk~~ 82 (240)
T 2p1t_A 54 LFTLVEWAKRIPHFSELPLDDQVILLRAG 82 (240)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcChhcCCHHHHHHHHHHH
Confidence 44568899999999999999988877654
No 164
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=38.41 E-value=38 Score=24.59 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 54 ~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~ 84 (232)
T 1osh_A 54 HVQVLVEFTKKLPGFQTLDHEDQIALLKGSA 84 (232)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchhhCCHHHHHHHHHHhH
Confidence 3445788999999999999999888766543
No 165
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=38.35 E-value=38 Score=25.46 Aligned_cols=30 Identities=10% Similarity=0.275 Sum_probs=24.6
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
+..+.++.+++|.|..|+.+++..|.+...
T Consensus 72 l~~~VewAK~lP~F~~L~~~DQi~LLk~~w 101 (271)
T 1l2j_A 72 LVHMISWAKKIPGFVELSLFDQVRLLESCW 101 (271)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence 334688899999999999999988877653
No 166
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=38.00 E-value=38 Score=24.90 Aligned_cols=31 Identities=13% Similarity=0.391 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 48 ~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~ 78 (243)
T 3ltx_A 48 ELVHLINWAKNVPGYTDLSLSDQVHLIECCW 78 (243)
T ss_dssp HHHHHHHHHTTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchhcCCHHHHHHHHHHHH
Confidence 4456788999999999999999888776543
No 167
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=37.84 E-value=38 Score=25.00 Aligned_cols=31 Identities=10% Similarity=0.301 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 60 ~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~ 90 (248)
T 3k6p_A 60 EIVVTISWAKSIPGFSSLSLSDQMSVLQSVW 90 (248)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccCCHHHHHHHHHHHH
Confidence 3445788899999999999999988876553
No 168
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=37.53 E-value=39 Score=24.97 Aligned_cols=30 Identities=7% Similarity=0.234 Sum_probs=24.4
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
+..+.++.+++|.|..|+.+++..|.+...
T Consensus 60 l~~~VewAK~lP~F~~L~~~DQi~LLk~~~ 89 (244)
T 1pdu_A 60 VDVIKQFAEKIPGYFDLLPEDQELLFQSAS 89 (244)
T ss_dssp HHHHHHHHTTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCCHHHHHHHHHHHH
Confidence 445678999999999999999887766543
No 169
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=37.33 E-value=37 Score=24.56 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.6
Q ss_pred HHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 54 EQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 54 ~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
..+.++.+++|.|..|+.+++..|.+..
T Consensus 55 ~~~v~wak~~p~F~~L~~~DQ~~LLk~~ 82 (237)
T 1pzl_A 55 LVLVEWAKYIPAFCELPLDDQVALLRAH 82 (237)
T ss_dssp HHHHHHHTTCHHHHTSCHHHHHHHHHHS
T ss_pred HHHHHHHHhCcCcccCCHHHHHHHHHHH
Confidence 3467889999999999999998887754
No 170
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=37.23 E-value=29 Score=25.98 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=24.8
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
++.+.++-+++|.|..|+.+++-.|.+...
T Consensus 65 i~~iV~wAK~iP~F~~L~~~DQi~LLk~~w 94 (257)
T 3v3e_B 65 LEVIRKWAEKIPGFAELSPADQDLLLESAF 94 (257)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCCHHHHHHHHHHHH
Confidence 456788999999999999999888766543
No 171
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=37.19 E-value=36 Score=24.81 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
.+..+.++.+++|.|..|+.+++..|.+..
T Consensus 56 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 85 (236)
T 1fcy_A 56 CIIKIVEFAKRLPGFTGLSIADQITLLKAA 85 (236)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCHHHHHHHHHHh
Confidence 344578899999999999999888776654
No 172
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=36.87 E-value=37 Score=25.06 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=23.7
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 65 l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 93 (248)
T 2nxx_E 65 VQLIVEFAKRLPGFDKLLREDQIALLKAC 93 (248)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhCCHHHHHHHHHHh
Confidence 44567889999999999999888776654
No 173
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=36.83 E-value=29 Score=25.70 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=23.8
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 54 l~~~VewAK~iP~F~~L~~~DQi~LLk~~ 82 (243)
T 3up3_A 54 MRRFVKMAKRLPAFNDLSQDGKFALLKGG 82 (243)
T ss_dssp HHHHHHHHHHCHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccCCHHHHHHHHHHh
Confidence 33467888999999999999988877654
No 174
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=36.52 E-value=34 Score=25.35 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
.+..+.++.+++|.|..|+.+++..|.+..
T Consensus 68 ~l~~~VewaK~iP~F~~L~~~DQi~LLk~~ 97 (248)
T 3l0l_A 68 AIQYVVEFAKRLSGFMELCQNDQIVLLKAG 97 (248)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccCCHHHHHHHHHHh
Confidence 344578889999999999999988876654
No 175
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=36.18 E-value=42 Score=24.48 Aligned_cols=32 Identities=9% Similarity=0.291 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 51 DDIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 51 ~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
..+..+.++.+++|.|..|+.+++..|.+...
T Consensus 44 ~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~ 75 (240)
T 3oll_A 44 KELVHMISWAKKIPGFVELSLFDQVRLLESCW 75 (240)
T ss_dssp HHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcccCCHHHHHHHHHHHH
Confidence 34456788999999999999999888776543
No 176
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=36.08 E-value=1.3e+02 Score=25.09 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=35.1
Q ss_pred HHHHhhhcceeEEccCCcEE-EecCCCCCeEEEEEEeEEEEEE--c-Ccee--EEecCCCee
Q psy7149 74 RKALCGVMVFAVVEKAGTIV-MNDGEELDSWSVVINGCVEVEL--S-DGRS--QMLQVGDSF 129 (167)
Q Consensus 74 l~~l~~~~~~~~~~~~ge~I-~~~Gd~~~~lyiI~~G~v~v~~--~-~~~~--~~l~~Gd~F 129 (167)
+..|--.+....+ .+|.+. .+-.-.++.+.+|++|++.|.. . +..+ ..|.+||+|
T Consensus 353 L~~lgiS~a~v~L-~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 413 (496)
T 3ksc_A 353 LRWLKLSAEHGSL-HKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRAL 413 (496)
T ss_dssp HHHHTCEEEEEEE-ETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccceeEEEEEe-eCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEE
Confidence 3444233444555 677665 4444558899999999999853 2 2222 368999988
No 177
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=35.89 E-value=42 Score=25.14 Aligned_cols=30 Identities=27% Similarity=0.394 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
.+..+.++.+++|.|..|+.+++..|.+..
T Consensus 80 ~l~~~VewaK~lP~F~~L~~~DQi~LLk~~ 109 (266)
T 3kmr_A 80 CIIKTVEFAKQLPGFTTLTIADQITLLKAA 109 (266)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcChhhCCHHHHHHHHHHH
Confidence 344578899999999999999988877654
No 178
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=35.84 E-value=43 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=24.5
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
+..+.++.+++|.|..|+.+++..|.+...
T Consensus 61 l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~ 90 (244)
T 2e2r_A 61 LVVIIGWAKHIPGFSTLSLADQMSLLQSAW 90 (244)
T ss_dssp HHHHHHHHTTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhhCCHHHHHHHHHHhH
Confidence 345678899999999999999888776653
No 179
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=35.71 E-value=35 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=23.8
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 63 l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 91 (244)
T 1nq7_A 63 IQYVVEFAKRITGFMELCQNDQILLLKSG 91 (244)
T ss_dssp HHHHHHHHHTCHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCCHHHHHHHHHHh
Confidence 44577899999999999999888776654
No 180
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=35.41 E-value=34 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.3
Q ss_pred cChhhhcCCHHHHHHHhhhcce
Q psy7149 62 HLKAFTNMTLAVRKALCGVMVF 83 (167)
Q Consensus 62 ~~~~F~~L~~~~l~~l~~~~~~ 83 (167)
.+|.|..|+++++..|+..+..
T Consensus 100 ~MP~~~~Lsd~ei~alaaYl~~ 121 (137)
T 1mz4_A 100 IFPKMRNLTEKDLVAIAGHILV 121 (137)
T ss_dssp TSGGGTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
Confidence 3888888999999999887753
No 181
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=35.37 E-value=40 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.354 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 47 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~ 77 (248)
T 1xpc_A 47 ELVHMINWAKRVPGFVDLTLHDQVHLLECAW 77 (248)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccccCCHHHHHHHHHHHh
Confidence 3445788999999999999999888766653
No 182
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=35.11 E-value=15 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=23.4
Q ss_pred CCeEEEEEEeEEEEEE--------cCc-----------eeEEecCCCee
Q psy7149 100 LDSWSVVINGCVEVEL--------SDG-----------RSQMLQVGDSF 129 (167)
Q Consensus 100 ~~~lyiI~~G~v~v~~--------~~~-----------~~~~l~~Gd~F 129 (167)
.+-+++|++|++.+.. ++. ....+++||++
T Consensus 64 ~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i 112 (239)
T 2xlg_A 64 INEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLI 112 (239)
T ss_dssp EEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEE
T ss_pred ccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEE
Confidence 5678999999999976 433 16789999987
No 183
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=34.50 E-value=40 Score=24.81 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=23.4
Q ss_pred HHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 54 EQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 54 ~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
..+.++.+++|.|..|+.+++..|.+..
T Consensus 60 ~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 87 (243)
T 2iz2_A 60 FSQVDWARNTVFFKDLKVDDQMKLLQHS 87 (243)
T ss_dssp HHHHHHHHTCTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChhHhhCChHHHHHHHHHH
Confidence 3568889999999999999988776654
No 184
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=34.36 E-value=42 Score=25.00 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=23.2
Q ss_pred HHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 54 EQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 54 ~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
..+.++.+++|.|..|+.+++..|.+..
T Consensus 70 ~~~VewaK~ip~F~~L~~~DQ~~LLk~~ 97 (257)
T 3plz_A 70 FSIVEWARSSIFFRELKVDDQMKLLQNC 97 (257)
T ss_dssp HHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcChhcCCHHHHHHHHHHH
Confidence 3467888999999999999988876654
No 185
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=34.11 E-value=2.1e+02 Score=23.92 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=21.8
Q ss_pred eEEccCCcEEEecCCCCCeEEEEEEeEEEEE
Q psy7149 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVE 114 (167)
Q Consensus 84 ~~~~~~ge~I~~~Gd~~~~lyiI~~G~v~v~ 114 (167)
..+ ++|.++...-.....+++|++|+..+.
T Consensus 53 ~~i-~p~gl~lPh~~~a~~~~yV~~G~g~~g 82 (510)
T 3c3v_A 53 LVL-RRNALRRPFYSNAPQEIFIQQGRGYFG 82 (510)
T ss_dssp EEE-CTTEEEEEEECSSCEEEEEEECCEEEE
T ss_pred EEE-CCCCCccceecCCCeEEEEEeCEEEEE
Confidence 344 788876554456778999999988774
No 186
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=33.99 E-value=1.3e+02 Score=24.22 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=45.6
Q ss_pred HHHHHhhhcceeEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEE--cCc--------------eeE--EecCCCeeeecc
Q psy7149 73 VRKALCGVMVFAVVEKAGTIVM-NDGEELDSWSVVINGCVEVEL--SDG--------------RSQ--MLQVGDSFGILP 133 (167)
Q Consensus 73 ~l~~l~~~~~~~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~--~~~--------------~~~--~l~~Gd~FGe~a 133 (167)
.+..+--.+....+ .+|.+.. +-.-.++.+++|++|+..+.. .++ .+. .+.+||+|=--
T Consensus 243 ~L~~l~is~a~~~l-~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP- 320 (416)
T 1uij_A 243 QLRDLDIFLSSVDI-NEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIP- 320 (416)
T ss_dssp HHHHHTEEEEEEEE-CTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC------------CCEEEEEEEEETTCEEEEC-
T ss_pred cchhcCcceEEEEE-cCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCccccccccccccceEEEEEEecCCcEEEEC-
Confidence 44555445555666 7777653 444557899999999988842 211 233 78999998322
Q ss_pred cccCCceeeEEEEecCceEEEEEe
Q psy7149 134 TMEKLYHEGVMRTRCDDCQFVCIT 157 (167)
Q Consensus 134 ll~~~~r~~tv~~a~~~~~ll~i~ 157 (167)
.+.++ .. .+.+++.++.+.
T Consensus 321 --~g~~h--~~-~n~~~~~~l~f~ 339 (416)
T 1uij_A 321 --AAYPF--VV-NATSNLNFLAFG 339 (416)
T ss_dssp --TTCCE--EE-EESSSEEEEEEE
T ss_pred --CCCeE--EE-EcCCCeEEEEEE
Confidence 22222 22 233566666653
No 187
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=33.97 E-value=39 Score=24.60 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
.+..+.++.+++|.|..|+.+++..|.+..
T Consensus 49 ~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~ 78 (235)
T 2nxx_A 49 QLFQLVQWAKLVPHFTSLPLTDQVQLLRAG 78 (235)
T ss_dssp HHHHHHHHHHHSTTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhhCCHHHHHHHHHHh
Confidence 344578899999999999999988877665
No 188
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=33.88 E-value=41 Score=24.63 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 49 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~ 79 (244)
T 3cjw_A 49 MLFSAVEWARNIPFFPDLQITDQVALLRLTW 79 (244)
T ss_dssp HHHHHHHHHHHSSSGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhCCChhcCCHHHHHHHHHHHH
Confidence 3445788999999999999999888876653
No 189
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=33.86 E-value=48 Score=24.84 Aligned_cols=31 Identities=10% Similarity=0.295 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 43 ~l~~~VewAK~lp~F~~L~~~DQi~LLk~~w 73 (268)
T 1yye_A 43 ELVHMISWAKKIPGFVELSLFDQVRLLESCW 73 (268)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchhcCCHHHHHHHHHHHH
Confidence 4456788999999999999999888766543
No 190
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=33.76 E-value=43 Score=25.05 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=23.7
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 62 l~~~VewAK~ip~F~~L~~~DQv~LLk~~ 90 (269)
T 1t7r_A 62 LVHVVKWAKALPGFRNLHVDDQMAVIQYS 90 (269)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccHhhCCHHHHHHHHHHh
Confidence 34567889999999999999988776654
No 191
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=33.33 E-value=44 Score=25.17 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHHHhhcChhhhcCCHHHHHHHhhhcce
Q psy7149 55 QLLDFTQHLKAFTNMTLAVRKALCGVMVF 83 (167)
Q Consensus 55 ~i~~~L~~~~~F~~L~~~~l~~l~~~~~~ 83 (167)
.+.++.+++|.|..|+.+++..|.+....
T Consensus 62 ~~V~wAK~iP~F~~L~~~DQv~LLk~~w~ 90 (268)
T 3f5c_B 62 KTLRFVKYLPCFQILPLDQQLVLVRSCWA 90 (268)
T ss_dssp HHHHHHHTCHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcccCCHHHHHHHHHHHhH
Confidence 46788999999999999998888765533
No 192
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=32.98 E-value=43 Score=24.57 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
.+..+.++.+++|.|..|+.+++..|.+..
T Consensus 66 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 95 (246)
T 1xvp_B 66 MVLQVIKFTKDLPVFRSLPIEDQISLLKGA 95 (246)
T ss_dssp HHHHHHHHHTTCHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchhhCCHHHHHHHHHhh
Confidence 345678899999999999999888776654
No 193
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=32.85 E-value=45 Score=24.77 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
.+..+.++.+++|.|..|+.+++..|.+..
T Consensus 54 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~ 83 (264)
T 1g2n_A 54 QIAALVVWARDIPHFSQLEMEDQILLIKGS 83 (264)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhcCCHHHHHHHHHHh
Confidence 345678899999999999999988776654
No 194
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=32.80 E-value=46 Score=24.52 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=23.8
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 69 l~~~VewaK~ip~F~~L~~~DQ~~LLk~~ 97 (254)
T 3b0t_A 69 IQKVIGFAKMIPGFRDLTSEDQIVLLKSS 97 (254)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCcccCCHHHHHHHHHHh
Confidence 44578899999999999999888776654
No 195
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=32.77 E-value=43 Score=25.19 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=23.9
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 86 v~~~VewAK~iP~F~~L~~~DQi~LLk~~ 114 (269)
T 3u9q_A 86 VQEITEYAKSIPGFVNLDLNDQVTLLKYG 114 (269)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCChhhcCHHHHHHHHHHh
Confidence 34567899999999999999988877654
No 196
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=32.55 E-value=41 Score=25.18 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 51 DDIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 51 ~~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
..+..+.++.+++|.|..|+.+++..|.+...
T Consensus 81 ~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~ 112 (267)
T 3ilz_A 81 PAITRVVDFAKKLPMFSELPXEDQIILLKGCC 112 (267)
T ss_dssp HHHHHHHHHHHTSHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhhCCHhHHHHHHHHHH
Confidence 34556788999999999999999888876553
No 197
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=32.46 E-value=47 Score=24.77 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=23.9
Q ss_pred HHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 54 EQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 54 ~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
..+.++.+++|.|..|+.+++..|.+...
T Consensus 88 ~~~v~waK~ip~F~~L~~~DQ~~LLk~~~ 116 (271)
T 1ovl_A 88 EIIRGWAEKIPGFADLPKADQDLLFESAF 116 (271)
T ss_dssp HHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCChHHHHHHHHHhH
Confidence 34678899999999999999888776653
No 198
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=32.17 E-value=1.3e+02 Score=24.75 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=35.4
Q ss_pred HHHHhhhcceeEEccCCcEE-EecCCCCCeEEEEEEeEEEEEE--c-Cc--eeEEecCCCee
Q psy7149 74 RKALCGVMVFAVVEKAGTIV-MNDGEELDSWSVVINGCVEVEL--S-DG--RSQMLQVGDSF 129 (167)
Q Consensus 74 l~~l~~~~~~~~~~~~ge~I-~~~Gd~~~~lyiI~~G~v~v~~--~-~~--~~~~l~~Gd~F 129 (167)
+..|--.+....+ .+|-+. .+-.-.++.+.++++|++.|.. . +. ....+.+||+|
T Consensus 318 L~~lgiS~a~v~L-~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~ 378 (466)
T 3kgl_A 318 LRFLRLSALRGSI-RQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL 378 (466)
T ss_dssp HHHHTCEEEEEEE-ETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccCceeeEEEEe-ecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEE
Confidence 3444444445556 677765 3444457889999999999853 2 22 23468999988
No 199
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=32.14 E-value=48 Score=24.31 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=24.3
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
+..+.++.+++|.|..|+.+++..|.+...
T Consensus 58 l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~ 87 (246)
T 1ymt_A 58 FISIVDWARRCMVFKELEVADQMTLLQNSW 87 (246)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhHHhCCHHHHHHHHHHHH
Confidence 345678899999999999999888766543
No 200
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=32.07 E-value=53 Score=24.44 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 52 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~ 82 (260)
T 3vhv_A 52 QMIQVVKWAKVLPGFKNLPLEDQITLIQYSW 82 (260)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHhcCCHHHHHHHHHHhH
Confidence 3456788999999999999999888766543
No 201
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=32.02 E-value=44 Score=25.10 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
.+..+.++.+++|.|..|+.+++..|.+..
T Consensus 77 ~l~~~VewaK~lP~F~~L~~~DQi~LLk~~ 106 (270)
T 1n83_A 77 AIQYVVEFAKRIDGFMELCQNDQIVLLKAG 106 (270)
T ss_dssp HHHHHHHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhhcCHHHHHHHHHHh
Confidence 345578899999999999999888776654
No 202
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=31.81 E-value=53 Score=24.53 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 59 ~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~ 89 (279)
T 1hg4_A 59 QLFQMVEYARMMPHFAQVPLDDQVILLKAAW 89 (279)
T ss_dssp HHHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChhhCCHHHHHHHHHHHH
Confidence 3445788899999999999999888766553
No 203
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=31.73 E-value=48 Score=24.88 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 96 l~~~vewaK~ip~F~~L~~~DQ~~LLk~~ 124 (282)
T 1lbd_A 96 LFTLVEWAKRIPHFSELPLDDQVILLRAG 124 (282)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcChhcCCHHHHHHHHHHH
Confidence 33467888999999999999988876654
No 204
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=31.41 E-value=50 Score=24.62 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=24.3
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
+..+.++.+++|.|..|+.+++..|.+...
T Consensus 55 l~~~VewaK~iP~F~~L~~~DQ~~LLk~~~ 84 (261)
T 3mnp_A 55 VIAAVKWAKAIPGFRNLHLDDQMTLLQYSW 84 (261)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcChhcCCHHHHHHHHHHHH
Confidence 345688899999999999999888776543
No 205
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=31.26 E-value=45 Score=24.90 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=23.6
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 81 l~~~VewaK~lp~F~~L~~~DQi~LLk~~ 109 (266)
T 2r40_D 81 VQLIVEFAKGLPGFAKISQSDQITLLKAC 109 (266)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccccCCHHHHHHHHHHH
Confidence 34467889999999999999888776654
No 206
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=31.11 E-value=20 Score=21.01 Aligned_cols=20 Identities=5% Similarity=0.054 Sum_probs=17.1
Q ss_pred ChhhhcCCHHHHHHHhhhcc
Q psy7149 63 LKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 63 ~~~F~~L~~~~l~~l~~~~~ 82 (167)
+|.|..|+++++..|+..+.
T Consensus 57 Mp~~~~Ls~~ei~~l~~yl~ 76 (79)
T 2d0s_A 57 MPPHPQVAEADIEKIVRWVL 76 (79)
T ss_dssp BCCCTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 78888999999999987654
No 207
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=30.81 E-value=1.5e+02 Score=21.27 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=22.5
Q ss_pred CCeEEEEEEeEEEEEEcC--ce--eEEecCCCee
Q psy7149 100 LDSWSVVINGCVEVELSD--GR--SQMLQVGDSF 129 (167)
Q Consensus 100 ~~~lyiI~~G~v~v~~~~--~~--~~~l~~Gd~F 129 (167)
.+.+++|++|+.....++ +. ...+++||++
T Consensus 104 ~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlI 137 (191)
T 1vr3_A 104 DEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMI 137 (191)
T ss_dssp SCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEE
T ss_pred cceEEEEEeceEEEEECCCCCeEEEEEECCCCEE
Confidence 357899999999987654 22 3478999988
No 208
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=30.12 E-value=48 Score=25.00 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=24.3
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
+..+.++.+++|.|..|+.+++..|.+...
T Consensus 101 l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~ 130 (283)
T 3ipq_A 101 VQEIVDFAKQLPGFLQLSREDQIALLKTSA 130 (283)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcChhhCCHHHHHHHHHHHH
Confidence 335678899999999999999888776543
No 209
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=30.12 E-value=49 Score=24.63 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 53 ~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~ 83 (261)
T 1sqn_A 53 QLLSVVKWSKSLPGFRNLHIDDQITLIQYSW 83 (261)
T ss_dssp HHHHHHHHHHHSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccHhhCCHHHHHHHHHhhH
Confidence 3445788899999999999999887766543
No 210
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=29.71 E-value=54 Score=24.90 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=23.5
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 72 l~~~VewAK~iP~F~~L~~~DQi~LLk~~ 100 (292)
T 2o4j_A 72 IQKVIGFAKMIPGFRDLTSDDQIVLLKSS 100 (292)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchhhccHHHHHHHHHHh
Confidence 34578899999999999999887776554
No 211
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=29.55 E-value=54 Score=25.02 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=23.8
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 84 l~~~VewaK~iP~F~~L~~~DQi~LLk~~ 112 (303)
T 1xdk_B 84 IIKIVEFAKRLPGFTGLTIADQITLLKAA 112 (303)
T ss_dssp HHHHHHHHHTSTTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccccCCHHHHHHHHHhh
Confidence 34468889999999999999888776654
No 212
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=29.47 E-value=12 Score=24.49 Aligned_cols=22 Identities=0% Similarity=-0.005 Sum_probs=12.4
Q ss_pred CCceeeeeCCCcccccccCCcc
Q psy7149 2 DRGVNIVFDDASSNLVQSNGFV 23 (167)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (167)
.+++..|+++|+.+|+..+.+.
T Consensus 93 ~~~~~~ga~~~l~KP~~~~~L~ 114 (141)
T 3cu5_A 93 KAAIKFRAIRYVEKPIDPSEIM 114 (141)
T ss_dssp ------CCCEEECSSCCHHHHH
T ss_pred HHHHhCCccEEEeCCCCHHHHH
Confidence 3577889999999998754443
No 213
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=29.20 E-value=2.2e+02 Score=23.45 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=34.0
Q ss_pred HHHhhhcceeEEccCCcEE-EecCCCCCeEEEEEEeEEEEEE--c-Cc-ee-EEecCCCee
Q psy7149 75 KALCGVMVFAVVEKAGTIV-MNDGEELDSWSVVINGCVEVEL--S-DG-RS-QMLQVGDSF 129 (167)
Q Consensus 75 ~~l~~~~~~~~~~~~ge~I-~~~Gd~~~~lyiI~~G~v~v~~--~-~~-~~-~~l~~Gd~F 129 (167)
..|--.+....+ .+|-+. .+-.-.++.+.++++|++.|.. . +. .. ..+.+||+|
T Consensus 319 ~~lgiS~a~v~l-~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVf 378 (465)
T 3qac_A 319 RHLRLSAAKGVL-YRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLV 378 (465)
T ss_dssp HHHTCEEEEEEE-CTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccceeEEEEEe-cCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEE
Confidence 333233444555 677655 3444457889999999998843 2 22 22 358999988
No 214
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=29.07 E-value=13 Score=28.84 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCCCH-HHHHHHHHHhhcChhhhcCCHH
Q psy7149 33 VKDRVRECLEKDPSERTD-DDIEQLLDFTQHLKAFTNMTLA 72 (167)
Q Consensus 33 ~~~~~r~~l~k~p~~R~~-~~~~~i~~~L~~~~~F~~L~~~ 72 (167)
+++.++.+|.+.|..|-. .++ .-...+.++|+|++++=+
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~-~~~~~i~~Hp~F~~idw~ 300 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEM-EGYGPLKAHPFFESVTWE 300 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGG-TCHHHHHTSGGGTTCCCT
T ss_pred HHHHHHHHccCCHhHCcChHHH-cCCHHHHCCCCcCCCCHH
Confidence 467888999999988853 222 123467889999988643
No 215
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=28.68 E-value=58 Score=24.93 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=24.4
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
+..+.++.+++|.|..|+.+++..|.+...
T Consensus 57 L~~~VewAK~lP~F~~L~~~DQi~LLk~~w 86 (298)
T 2ocf_A 57 LVHMINWAKRVPGFVDLTLHDQVHLLECAW 86 (298)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchhcCCHHHHHHHHHHhh
Confidence 345678999999999999999888766553
No 216
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=28.38 E-value=65 Score=24.81 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=23.8
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 129 l~~~VewAK~lP~F~~L~~~DQi~LLk~~ 157 (310)
T 1z5x_E 129 VQLIVEFSKRLPGFDKLIREDQIALLKAC 157 (310)
T ss_dssp HHHHHHHHHTSTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchhhCCHHHHHHHHHHH
Confidence 44568889999999999999888776654
No 217
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=28.22 E-value=45 Score=19.31 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=15.9
Q ss_pred ChhhhcCCHHHHHHHhhhcc
Q psy7149 63 LKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 63 ~~~F~~L~~~~l~~l~~~~~ 82 (167)
+|.| .|+++++..|+..+.
T Consensus 61 Mp~~-~ls~~ei~~l~~yl~ 79 (82)
T 1cch_A 61 MPPN-PVTEEEAKILAEWVL 79 (82)
T ss_dssp CCCC-SCCHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHH
Confidence 8888 999999999887653
No 218
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=27.66 E-value=63 Score=24.70 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=23.4
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVM 81 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~ 81 (167)
+..+.++.+++|.|..|+.+++..|.+..
T Consensus 115 l~~~VewAK~iP~F~~L~~~DQi~LLk~~ 143 (302)
T 2hc4_A 115 IQKVIGFAKMIPGFRDLTAEDQIALLKSS 143 (302)
T ss_dssp HHHHHHHHTTSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhhCCHHHHHHHHHHH
Confidence 34578899999999999999887765544
No 219
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=27.66 E-value=65 Score=24.60 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=24.3
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
+..+.++.+++|.|..|+.+++..|.+...
T Consensus 87 l~~~VewAK~lP~F~~L~~~DQi~LLk~~~ 116 (294)
T 3vhu_A 87 MIQVVKWAKVLPGFKNLPLEDQITLIQYSW 116 (294)
T ss_dssp HHHHHHHHHTCTTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchhhCCHHHHHHHHHHhH
Confidence 445678899999999999999888776543
No 220
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=25.93 E-value=1.4e+02 Score=23.92 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=36.2
Q ss_pred cCCcEEE-ecCCCCCeEEEEEEeEEEEEE--c------C---ceeEEecCCCeeeecccccCCceeeEEEEecCceEEEE
Q psy7149 88 KAGTIVM-NDGEELDSWSVVINGCVEVEL--S------D---GRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVC 155 (167)
Q Consensus 88 ~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~--~------~---~~~~~l~~Gd~FGe~all~~~~r~~tv~~a~~~~~ll~ 155 (167)
.+|.+.. +-.-.++.+++|++|+..+.. . + .....+.+||+|=-- .+.+ ..+ .+..++.++.
T Consensus 247 ~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vvP---~G~~--h~~-~n~~~l~~l~ 320 (397)
T 2phl_A 247 EEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIP---AAYP--VAI-KATSNVNFTG 320 (397)
T ss_dssp CTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEEC---TTCC--EEE-EESSSEEEEE
T ss_pred cCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEEC---CCCe--EEE-EeCCCeEEEE
Confidence 5555442 333447899999999988842 2 2 235678999998322 2222 222 2345666666
Q ss_pred E
Q psy7149 156 I 156 (167)
Q Consensus 156 i 156 (167)
+
T Consensus 321 f 321 (397)
T 2phl_A 321 F 321 (397)
T ss_dssp E
T ss_pred E
Confidence 5
No 221
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=25.49 E-value=6.3 Score=25.74 Aligned_cols=23 Identities=0% Similarity=-0.051 Sum_probs=16.7
Q ss_pred CCceeeeeCCCcccccccCCccc
Q psy7149 2 DRGVNIVFDDASSNLVQSNGFVS 24 (167)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (167)
.+++..||++|+.+|+..+.+..
T Consensus 94 ~~~~~~g~~~~l~KP~~~~~l~~ 116 (140)
T 3h5i_A 94 EKIRSVTAYGYVMKSATEQVLIT 116 (140)
T ss_dssp GGGGGSCEEEEEETTCCHHHHHH
T ss_pred HHHHhCCCcEEEeCCCCHHHHHH
Confidence 35677899999999887554443
No 222
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=25.43 E-value=63 Score=25.01 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 52 DIEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 52 ~~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+..+.++.+++|.|..|+.+++..|.+...
T Consensus 132 ~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w 162 (316)
T 1nrl_A 132 MFKGIISFAKVISYFRDLPIEDQISLLKGAA 162 (316)
T ss_dssp HHHHHHHHHHHCHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchhhcCHHHHHHHHHHHH
Confidence 3456788999999999999998887766543
No 223
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=25.05 E-value=1.7e+02 Score=23.70 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=36.5
Q ss_pred HHHHHhhhcceeEEccCCcEEE-ecCCCCCeEEEEEEeEEEEEE--cC-----------c--eeE--EecCCCee
Q psy7149 73 VRKALCGVMVFAVVEKAGTIVM-NDGEELDSWSVVINGCVEVEL--SD-----------G--RSQ--MLQVGDSF 129 (167)
Q Consensus 73 ~l~~l~~~~~~~~~~~~ge~I~-~~Gd~~~~lyiI~~G~v~v~~--~~-----------~--~~~--~l~~Gd~F 129 (167)
.+..+--.+....+ .+|.+.. +-.-.++.+++|++|+..+.. .+ . .+. .+.+||+|
T Consensus 260 ~L~~l~is~a~v~l-~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~ 333 (434)
T 2ea7_A 260 QLKDLDVFISSVDM-KEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVF 333 (434)
T ss_dssp HHHHHTEEEEEEEE-CTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEE
T ss_pred cccccCcceEEEEE-cCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCcceEEEEEEecCCcEE
Confidence 44455445556666 7877653 344457899999999988842 21 1 133 78999998
No 224
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=24.92 E-value=7.4 Score=25.26 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=16.0
Q ss_pred CCceeeeeCCCcccccccCCcc
Q psy7149 2 DRGVNIVFDDASSNLVQSNGFV 23 (167)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (167)
.+++..||++|+.+|+..+.++
T Consensus 92 ~~~~~~g~~~~l~KP~~~~~l~ 113 (140)
T 3n53_A 92 VNGLHSGADDYLTKPFNRNDLL 113 (140)
T ss_dssp TTTTTCCCSEEEESSCCHHHHH
T ss_pred HHHHhcCCCeeeeCCCCHHHHH
Confidence 3567788999999988765444
No 225
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=24.58 E-value=45 Score=23.67 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=20.8
Q ss_pred CeEEEEEEeEEEEEE--cCcee-EEecCCCee
Q psy7149 101 DSWSVVINGCVEVEL--SDGRS-QMLQVGDSF 129 (167)
Q Consensus 101 ~~lyiI~~G~v~v~~--~~~~~-~~l~~Gd~F 129 (167)
+.+++|++|+..... ++... ..+++||++
T Consensus 101 ~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli 132 (179)
T 1zrr_A 101 DEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLI 132 (179)
T ss_dssp CEEEEEEESCCCCCEECSSCEEEEECCCSCEE
T ss_pred heEEEEEcceEEEEEEeCCEEEEEEECCCCEE
Confidence 568999999987754 33332 348999988
No 226
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=24.44 E-value=69 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.394 Sum_probs=24.2
Q ss_pred HHHHHHHhhcChhhhcCCHHHHHHHhhhcc
Q psy7149 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 53 ~~~i~~~L~~~~~F~~L~~~~l~~l~~~~~ 82 (167)
+..+.++.+++|.|..|+.+++-.|.+...
T Consensus 235 l~~~VewAK~iP~F~~L~~~DQi~LLk~~w 264 (419)
T 3dzy_D 235 VQEITEYAKSIPGFVNLDLNDQVTLLKYGV 264 (419)
T ss_dssp HHHHHHHHTTSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHH
Confidence 334678999999999999999888876543
No 227
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=24.31 E-value=96 Score=19.70 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=28.8
Q ss_pred cCCcEEEecCCCCCeEEEEEEeEEEEEEcCc-eeEEecCCCeeee
Q psy7149 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDG-RSQMLQVGDSFGI 131 (167)
Q Consensus 88 ~~ge~I~~~Gd~~~~lyiI~~G~v~v~~~~~-~~~~l~~Gd~FGe 131 (167)
.||++=|.-+ ..-..=|++|++.|...+. .-..+.+|+.|--
T Consensus 31 ~pGeytF~T~--~~E~M~vvsG~~~V~lpg~~ew~~~~aGesF~V 73 (94)
T 2oyz_A 31 LPGEYTFGTQ--APERMTVVKGALVVKRVGEADWTTYSSGESFDV 73 (94)
T ss_dssp CSEEEEEEES--SCEEEEEEESEEEEEETTCSSCEEEETTCEEEE
T ss_pred eceEEEEcCC--CeEEEEEEEeEEEEEcCCCCcCEEECCCCEEEE
Confidence 5677666554 3345567899999977653 5567889999843
No 228
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=22.25 E-value=39 Score=20.22 Aligned_cols=23 Identities=17% Similarity=0.016 Sum_probs=18.3
Q ss_pred hhcChhhhc---CCHHHHHHHhhhcc
Q psy7149 60 TQHLKAFTN---MTLAVRKALCGVMV 82 (167)
Q Consensus 60 L~~~~~F~~---L~~~~l~~l~~~~~ 82 (167)
...+|.|.. |+++++..|+..+.
T Consensus 56 ~~~MP~~~~~~~Lsd~ei~~v~~yi~ 81 (83)
T 1cc5_A 56 LNAMPPKGTCADCSDDELKAAIGKMS 81 (83)
T ss_dssp BTTBCSSSSCSSCCHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 347999974 99999999987653
No 229
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=21.50 E-value=69 Score=18.70 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.1
Q ss_pred cChhhh--cCCHHHHHHHhhhcc
Q psy7149 62 HLKAFT--NMTLAVRKALCGVMV 82 (167)
Q Consensus 62 ~~~~F~--~L~~~~l~~l~~~~~ 82 (167)
.+|.|. .|+++++..|+..+.
T Consensus 59 ~Mp~~~~~~ls~~ei~~l~~yi~ 81 (85)
T 3cu4_A 59 GMPAFGEAMIPPADALKIGEYVV 81 (85)
T ss_dssp TSCCCCTTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH
Confidence 388887 599999999987653
No 230
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=21.40 E-value=34 Score=19.91 Aligned_cols=19 Identities=5% Similarity=0.032 Sum_probs=16.1
Q ss_pred ChhhhcCCHHHHHHHhhhcc
Q psy7149 63 LKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 63 ~~~F~~L~~~~l~~l~~~~~ 82 (167)
+|.| .|+++++..|+..+.
T Consensus 61 Mp~~-~ls~~ei~~l~~yl~ 79 (82)
T 2exv_A 61 MPPN-AVSDDEAQTLAKWVL 79 (82)
T ss_dssp BCCC-CCCHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHH
Confidence 8888 999999999987653
No 231
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=21.31 E-value=35 Score=19.95 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=16.1
Q ss_pred ChhhhcCCHHHHHHHhhhcc
Q psy7149 63 LKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 63 ~~~F~~L~~~~l~~l~~~~~ 82 (167)
+|.| .|+++++..|+..+.
T Consensus 59 Mp~~-~Lsd~ei~~l~~yl~ 77 (80)
T 1ayg_A 59 MPPQ-NVTDAEAKQLAQWIL 77 (80)
T ss_dssp BCCC-CCCHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHH
Confidence 7888 899999999987653
No 232
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=21.20 E-value=1e+02 Score=23.00 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHhhcChhhhcCCHHHHH
Q psy7149 33 VKDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRK 75 (167)
Q Consensus 33 ~~~~~r~~l~k~p~~R~~~~~~~i~~~L~~~~~F~~L~~~~l~ 75 (167)
+.+.++.+|...|.+|. .. ..+.+.|+|.++.+++..
T Consensus 310 l~~li~~~L~~dP~~Rp-----t~-~e~l~hp~f~~~~~~~~~ 346 (355)
T 2eu9_A 310 LFDLMRRMLEFDPAQRI-----TL-AEALLHPFFAGLTPEERS 346 (355)
T ss_dssp HHHHHHHHTCSSTTTSC-----CH-HHHTTSGGGGGCCHHHHC
T ss_pred HHHHHHHHhcCChhhCc-----CH-HHHhcChhhcCCChhhcc
Confidence 45778899999999996 22 345678999999988653
No 233
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=21.15 E-value=7.8 Score=27.24 Aligned_cols=22 Identities=5% Similarity=-0.090 Sum_probs=17.8
Q ss_pred CceeeeeCCCcccccccCCccc
Q psy7149 3 RGVNIVFDDASSNLVQSNGFVS 24 (167)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (167)
++++.||+||+.+|+..+.+..
T Consensus 102 ~~~~~ga~~~l~KP~~~~~L~~ 123 (205)
T 1s8n_A 102 RARDAGAMAYLVKPFSISDLIP 123 (205)
T ss_dssp TTGGGSCEEEEEESCCHHHHHH
T ss_pred HHHhcCCcEEEeCCCCHHHHHH
Confidence 5788999999999998665543
No 234
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=21.09 E-value=24 Score=20.69 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=17.1
Q ss_pred cChhhhcCCHHHHHHHhhhcc
Q psy7149 62 HLKAFTNMTLAVRKALCGVMV 82 (167)
Q Consensus 62 ~~~~F~~L~~~~l~~l~~~~~ 82 (167)
.+|.|..|+++++..|+..+.
T Consensus 58 ~Mp~~~~Ls~~ei~~l~~yl~ 78 (81)
T 1a56_A 58 PMPPNVNVSDADAKALADWIL 78 (81)
T ss_dssp CBCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH
Confidence 378888899999999987653
No 235
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=21.08 E-value=4.9 Score=27.91 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=18.2
Q ss_pred CceeeeeCCCcccccccCCcccc
Q psy7149 3 RGVNIVFDDASSNLVQSNGFVSS 25 (167)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (167)
++++.|||+|+.||+..+.++..
T Consensus 96 ~a~~~Ga~~~l~KP~~~~~L~~~ 118 (184)
T 3rqi_A 96 QAVKDGADNYLAKPANVESILAA 118 (184)
T ss_dssp HHHHHTCSEEEESSCCHHHHHHH
T ss_pred HHHHhCHHHheeCCCCHHHHHHH
Confidence 46778999999999987666544
No 236
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=21.00 E-value=65 Score=18.63 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=16.7
Q ss_pred cChhhh-cCCHHHHHHHhhhcc
Q psy7149 62 HLKAFT-NMTLAVRKALCGVMV 82 (167)
Q Consensus 62 ~~~~F~-~L~~~~l~~l~~~~~ 82 (167)
.+|.|. .|+++++..|+..+.
T Consensus 57 ~Mp~~~~~ls~~ei~~l~~yl~ 78 (85)
T 1gdv_A 57 AMPAFGGRLVDEDIEDAANYVL 78 (85)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHH
Confidence 478886 699999999887654
No 237
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=20.50 E-value=8.3 Score=26.86 Aligned_cols=22 Identities=0% Similarity=0.095 Sum_probs=17.5
Q ss_pred CceeeeeCCCcccccccCCccc
Q psy7149 3 RGVNIVFDDASSNLVQSNGFVS 24 (167)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (167)
++++.|+++|+.+|+..+.+..
T Consensus 96 ~a~~~ga~~~l~KP~~~~~L~~ 117 (196)
T 1qo0_D 96 QIIELECHGVITQPLDAHRVLP 117 (196)
T ss_dssp HHHHHTCSEEEESSCCGGGHHH
T ss_pred HHHHcCCCeeEecCcCHHHHHH
Confidence 4567899999999998766654
Done!