RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7149
(167 letters)
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 191 bits (486), Expect = 4e-58
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 35 DRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVM 94
+R L K P +RT DD+E + D H+KA ++++ V++ L GV++F K GT++
Sbjct: 9 AHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLF 68
Query: 95 NDGEELDSWSVVINGCVEVELS-DGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQF 153
N GEE SW +++ G V V + G L GD FG L + + R D+C F
Sbjct: 69 NQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHF 128
Query: 154 VCITQTDYYRIQHQ 167
+ + + D+ RI
Sbjct: 129 LRVDKEDFNRILRD 142
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 183 bits (466), Expect = 2e-54
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Query: 24 SSSLFQSLIVKDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVF 83
+ L + +R L K P +RT DD+E + D H+KA ++++ V++ L GV++F
Sbjct: 303 TMLLLSQMGPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIF 362
Query: 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-DGRSQMLQVGDSFGILPTMEKLYHEG 142
K GT++ N GEE SW +++ G V V + G L GD FG L +
Sbjct: 363 ESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAA 422
Query: 143 VMRTRCDDCQFVCITQTDYYRIQHQ 167
+ R D+C F+ + + D+ RI
Sbjct: 423 SIVLREDNCHFLRVDKEDFNRILRD 447
Score = 154 bits (390), Expect = 3e-44
Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 10/137 (7%)
Query: 38 RECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDG 97
CL+K P ER+ +D++ + + +KAF + + +C + +EK G + G
Sbjct: 22 IACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEK-GITLFRQG 80
Query: 98 EELDSWSVVINGCVEVELSDGRSQM-------LQVGDSFGILPTMEKLYHEGVMRTRCDD 150
+ +W V+ G ++V++S+ S L +G +FG ++ + TR +
Sbjct: 81 DIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFG-ESILDNTPRHATIVTR-ES 138
Query: 151 CQFVCITQTDYYRIQHQ 167
+ + I Q D+ + +
Sbjct: 139 SELLRIEQEDFKALWEK 155
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ
domain containing guanine nucleotide exchange factor 2,
PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 135 bits (343), Expect = 6e-42
Identities = 68/123 (55%), Positives = 91/123 (73%)
Query: 45 PSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWS 104
DDDIEQLL+F L AF NMT++VR+ LC VM+F VVE+AG I++ DG+ELDSW
Sbjct: 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWY 62
Query: 105 VVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRI 164
V++NG VE+ DG+ + L +G+SFGI PT++K Y G++RT+ DDCQFVCI Q DY+RI
Sbjct: 63 VILNGTVEISHPDGKVENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRI 122
Query: 165 QHQ 167
+
Sbjct: 123 LNH 125
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Length = 469
Score = 95.4 bits (236), Expect = 1e-23
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Query: 24 SSSLFQSLIVKDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVF 83
+ L + +R L K P +RT DD+E + D H+KA ++++ V++ L GV++F
Sbjct: 303 TMLLLSQMGPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIF 362
Query: 84 AVVEKAGTIVMNDGEELDSWSVVINGCVEVELSD-GRSQMLQVGDSFGILPTMEKLYHEG 142
K GT++ N GEE SW +++ G V V + G L GD FG L +
Sbjct: 363 ESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAA 422
Query: 143 VMRTRCDDCQFVCITQTDYYRIQHQ 167
+ R D+C F+ + + D+ RI
Sbjct: 423 SIVLREDNCHFLRVDKEDFNRILRD 447
Score = 90.7 bits (224), Expect = 5e-22
Identities = 30/142 (21%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 33 VKDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTI 92
CL+K P ER+ +D++ + + +KAF + + +C + +EK G
Sbjct: 17 SSAEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEK-GIT 75
Query: 93 VMNDGEELDSWSVVINGCVEVELSDGRSQ-------MLQVGDSFGILPTMEKLYHEGVMR 145
+ G+ +W V+ G ++V++S+ S L +G +FG ++ +
Sbjct: 76 LFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFG-ESILDNTPRHATIV 134
Query: 146 TRCDDCQFVCITQTDYYRIQHQ 167
TR + + + I Q D+ + +
Sbjct: 135 TR-ESSELLRIEQEDFKALWEK 155
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit,
CAMP-dependent protein kinase, alpha-catalytic SU;
cyclic adenosine monophosphate; HET: SEP TPO ANP TAM;
2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Length = 291
Score = 56.2 bits (135), Expect = 3e-10
Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 2/130 (1%)
Query: 38 RECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDG 97
+ + + L + F+++ R + M AG V+ G
Sbjct: 19 AASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSF-IAGETVIQQG 77
Query: 98 EELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157
+E D++ V+ G ++V +++ + + G SFG L + ++ + + + I
Sbjct: 78 DEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAK-TNVKLWGID 136
Query: 158 QTDYYRIQHQ 167
+ Y RI
Sbjct: 137 RDSYRRILMG 146
Score = 36.5 bits (84), Expect = 0.002
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 38 RECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDG 97
R+ + T + +F + ++ R + + E G ++ G
Sbjct: 137 RDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFED-GQKIVVQG 195
Query: 98 EELDSWSVVINGCVEVELSDGRSQM------LQVGDSFG 130
E D + +++ G V ++ L D FG
Sbjct: 196 EPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFG 234
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 53.2 bits (127), Expect = 5e-09
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 2/130 (1%)
Query: 38 RECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDG 97
+ + + L F ++ R + M AG V+ G
Sbjct: 110 AVSYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTH-IAGETVIQQG 168
Query: 98 EELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTRCDDCQFVCIT 157
E D++ VV G V+V ++ + G SFG L + ++ + D + I
Sbjct: 169 NEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRAATVKAK-TDLKLWGID 227
Query: 158 QTDYYRIQHQ 167
+ Y RI
Sbjct: 228 RDSYRRILMG 237
Score = 33.5 bits (76), Expect = 0.026
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 7/99 (7%)
Query: 38 RECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDG 97
R+ + T + +F + ++ R + + E G ++ G
Sbjct: 228 RDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFED-GEKIVVQG 286
Query: 98 EELDSWSVVINGCVEVELSDGRSQ------MLQVGDSFG 130
E D + ++ G V ++ L D FG
Sbjct: 287 EPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFG 325
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 50.4 bits (121), Expect = 1e-08
Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 14/133 (10%)
Query: 38 RECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDG 97
+ + + L + F+++ R + M AG V+ G
Sbjct: 18 AASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSF-IAGETVIQQG 76
Query: 98 EELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEK--LYHEGVMRTR----CDDC 151
+E D++ V+ G ++V +++ + + G SFG E +Y R +
Sbjct: 77 DEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFG-----ELALIYGT--PRAATVKAKTNV 129
Query: 152 QFVCITQTDYYRI 164
+ I + Y RI
Sbjct: 130 KLWGIDRDSYRRI 142
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 48.0 bits (114), Expect = 3e-07
Identities = 18/141 (12%), Positives = 46/141 (32%), Gaps = 11/141 (7%)
Query: 32 IVKDRVRECLEKDPS-ERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAG 90
+ R ++ +++ + + + N+ L+ + + M
Sbjct: 12 MASIEGRGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEY-GKD 70
Query: 91 TIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTR--- 147
+ ++ +G+ V+ +G VEV + + G FG L + RT
Sbjct: 71 SCIIKEGDVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAIL-----YNCTRTATVK 125
Query: 148 -CDDCQFVCITQTDYYRIQHQ 167
+ + I + + I +
Sbjct: 126 TLVNVKLWAIDRQCFQTIMMR 146
Score = 37.2 bits (86), Expect = 0.001
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 38 RECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDG 97
R+C + + ++F + + F ++ + L V+ E G ++ G
Sbjct: 137 RQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYEN-GEYIIRQG 195
Query: 98 EELDSWSVVINGCVEVELSDGRSQ------MLQVGDSFG 130
D++ ++ G V V D ++ L GD FG
Sbjct: 196 ARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFG 234
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide
binding domain, evolution, PKA signaling, transfer; HET:
CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 46.7 bits (111), Expect = 5e-07
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 10/119 (8%)
Query: 53 IEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVE 112
+++L ++ F + ++ + + V G ++ G++ D + VV G V+
Sbjct: 2 LQRLEKSIRNNFLFNKLDSDSKRLVINCLEEKSV-PKGATIIKQGDQGDYFYVVEKGTVD 60
Query: 113 VELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTR----CDDCQFVCITQTDYYRIQHQ 167
++D + G SFG L M R DC + + + +I
Sbjct: 61 FYVNDNKVNSSGPGSSFGELALM-----YNSPRAATVVATSDCLLWALDRLTFRKILLG 114
Score = 38.3 bits (89), Expect = 5e-04
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 38 RECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDG 97
R K + D + + ++T R L + + + G ++ +G
Sbjct: 105 RLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQP-GETIIREG 163
Query: 98 EELDSWSVVINGCVEVELSDGRS-QMLQVGDSFG 130
++ +++ ++ G V+V L+ D FG
Sbjct: 164 DQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFG 197
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 45.0 bits (107), Expect = 1e-06
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 38 RECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDG 97
+ + +TDD +L + + + F N+ + M +V K G V++ G
Sbjct: 18 DDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLV-KEGEHVIDQG 76
Query: 98 EELDSWSVVINGCVEVELSDGRSQM----LQVGDSFG 130
++ D++ V+ G ++ + SFG
Sbjct: 77 DDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFG 113
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase;
HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Length = 139
Score = 43.5 bits (103), Expect = 3e-06
Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 14/124 (11%)
Query: 47 ERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVV 106
++ + + + N+ L+ + + M + ++ +G+ V+
Sbjct: 12 PKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEY-GKDSCIIKEGDVGSLVYVM 70
Query: 107 INGCVEVELSDGRSQMLQVGDSFGILPTMEK--LYHEGVMRT---RCD-DCQFVCITQTD 160
+G VEV + + G FG E LY+ RT + + + I +
Sbjct: 71 EDGKVEVTKEGVKLCTMGPGKVFG-----ELAILYNC--TRTATVKTLVNVKLWAIDRQC 123
Query: 161 YYRI 164
+ I
Sbjct: 124 FQTI 127
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 3e-05
Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 61/137 (44%)
Query: 8 VFDDASSNLVQSNGFVSSSLFQSLIVKD---------------RVRE-----CLEKDP-- 45
V++ A ++ + GF S+ IV + R+RE E
Sbjct: 1645 VWNRADNHFKDTYGF---SILD--IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 46 ---SERTDDDI------------EQLLDFTQHLKAFTN--MTLAVRKALCGVMVFAVVEK 88
+E+ +I + LL TQ FT + + KA F ++
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQ----FTQPAL-TLMEKAA-----FEDLKS 1749
Query: 89 AGTIVMND-------GE 98
G I + GE
Sbjct: 1750 KGLIPADATFAGHSLGE 1766
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide
binding protein, structural genomics; HET: MSE CMP;
1.79A {Methylobacillus flagellatus KT}
Length = 187
Score = 39.7 bits (93), Expect = 1e-04
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 46 SERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSV 105
D E++L+ +K F + + + LC M ++ +G+ D +
Sbjct: 27 LGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAA-PRDCQLLTEGDPGDYLLL 85
Query: 106 VINGCVEV--ELSDGRSQMLQV---GDSFG 130
++ G V V ++ + Q + G G
Sbjct: 86 ILTGEVNVIKDIPNKGIQTIAKVGAGAIIG 115
>3ukn_A Novel protein similar to vertebrate potassium VOL channel,
subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD,
CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB:
3ukt_B 3ukv_B
Length = 212
Score = 39.3 bits (92), Expect = 2e-04
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 33 VKDRVRECLEKDPSERTDDDIEQLL---------DFTQHL-------KAFTNMTLAVRKA 76
+ R+ EC + S D+ +LL D HL F + + ++
Sbjct: 34 LAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELLQLPLFESASRGCLRS 93
Query: 77 LCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFG 130
L ++ + G ++ G+ L + V +G +EV + +L GD G
Sbjct: 94 LSLIIKTSFCAP-GEFLIRQGDALQAIYFVCSGSMEVLKDNTVLAILGKGDLIG 146
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2; CNBD, C-linker, pacemaker,
HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A
{Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A*
3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Length = 202
Score = 36.1 bits (84), Expect = 0.002
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 17/114 (14%)
Query: 33 VKDRVRECLEKDPSERTDDDIEQLLDFTQHLKA----------------FTNMTLAVRKA 76
+ ++ + E + D+ L + L+ F N A
Sbjct: 31 FRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANADPNFVTA 90
Query: 77 LCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFG 130
+ + F V + G ++ +G + +G V V + L G FG
Sbjct: 91 MLTKLKFEVFQP-GDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFG 143
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 36.2 bits (84), Expect = 0.002
Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 15/156 (9%)
Query: 18 QSNGFVSSSLFQSLIVKDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKAL 77
S+G V + P + DD ++ + + T +
Sbjct: 7 HSSGLVPRGSGMKETAAAKFERQHMDSP-DLGTDDDDKAMADIGSMVLGKPQTDPTLEWF 65
Query: 78 CGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV--ELSDGRSQMLQV---GDSFGIL 132
+ +++ GE+ ++ ++ G V V + +G+ +L GD G L
Sbjct: 66 LSHCHIHKYPS-KSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGEL 124
Query: 133 PTMEKLYHEGVMRTRC----DDCQFVCITQTDYYRI 164
L+ EG R+ C+ I+ + ++
Sbjct: 125 G----LFEEGQERSAWVRAKTACEVAEISYKKFRQL 156
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 36.3 bits (83), Expect = 0.003
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 38 RECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDG 97
R + + + F + L ++ ++ R + V+ V G ++ G
Sbjct: 247 RVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYND-GEQIIAQG 305
Query: 98 EELDSWSVVINGCVEVELSDGRSQ-----------MLQVGDSFG 130
+ DS+ +V +G V++ + G FG
Sbjct: 306 DLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFG 349
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
genomics, joint center for structura genomics, JCSG;
2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
b.82.3.2
Length = 232
Score = 35.7 bits (83), Expect = 0.003
Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 44 DPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVE-KAGTIVMNDGEELDS 102
D +E + D L F + ++ + ++ KAG ++ G
Sbjct: 4 DKIHHHHHHMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQ 63
Query: 103 WSVVINGCVEVEL--SDGRSQMLQV---GDSFG 130
++ G + + + +++
Sbjct: 64 LCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE 96
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable
regulatory domain of potassium channel, membrane PR
transport protein; 2.20A {Mus musculus}
Length = 160
Score = 35.0 bits (81), Expect = 0.005
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 48 RTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVI 107
R D + + AF + +AL G ++ + GE +DS V+
Sbjct: 17 RADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHC-APGDLIYHAGESVDSLCFVV 75
Query: 108 NGCVEVELSDGRSQMLQVGDSFG 130
+G +EV D +L GD FG
Sbjct: 76 SGSLEVIQDDEVVAILGKGDVFG 98
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG
potassium channel; dimer helical bundle beta barrel core
with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium
loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A*
1u12_A 3co2_A
Length = 138
Score = 34.6 bits (80), Expect = 0.005
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQV 125
F + AV + + V AG ++ GE D V+ G V V + L
Sbjct: 19 FQKLGPAVLVEIVRALRARTVP-AGAVICRIGEPGDRMFFVVEGSVSVATPNPVE--LGP 75
Query: 126 GDSFG 130
G FG
Sbjct: 76 GAFFG 80
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic
nucleotide-binding domain, structural genomics, joint
for structural genomics; 2.55A {Eubacterium rectale atcc
33656}
Length = 220
Score = 34.5 bits (80), Expect = 0.007
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 57 LDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL- 115
+ F + + ++ A +K + ++ V+K GTI+ N + +V +G + +
Sbjct: 2 MSFENYFPLWNDLNTAQKKLISDNLITQHVKK-GTIIHNGNMDCTGLLLVKSGQLRTYIL 60
Query: 116 -SDGRSQMLQV---GDSFGI 131
+GR L D +
Sbjct: 61 SDEGREITLYRLFDMDMCLL 80
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 34.5 bits (80), Expect = 0.008
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 51 DDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGC 110
++++L F + + AL + + G V +GE D ++I+G
Sbjct: 2 SHMDEIL---ARAGIFQGVEPSAIAALTKQLQPVDFPR-GHTVFAEGEPGDRLYIIISGK 57
Query: 111 VEV--ELSDGRSQMLQV---GDSFGILP 133
V++ DGR +L + D FG L
Sbjct: 58 VKIGRRAPDGRENLLTIMGPSDMFGELS 85
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces
coelicolor structural genomics, PSI-2, protein structure
initiative; 2.00A {Streptomyces coelicolor A3}
Length = 149
Score = 33.8 bits (78), Expect = 0.011
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 7/115 (6%)
Query: 55 QLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV- 113
+ D + F + L M + + G + ++G+ D VV G V++
Sbjct: 2 HMDDVLRRNPLFAALDDEQSAELRASMSEVTLAR-GDTLFHEGDPGDRLYVVTEGKVKLH 60
Query: 114 -ELSDGRSQMLQV---GDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRI 164
DGR ML V + G L + + + + + D
Sbjct: 61 RTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTA-LTEVKLLALGHGDLQPW 114
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat
transcription; HET: PR3; 2.3A {Listeria monocytogenes}
SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Length = 238
Score = 33.9 bits (78), Expect = 0.014
Identities = 7/83 (8%), Positives = 20/83 (24%), Gaps = 6/83 (7%)
Query: 88 KAGTIVMNDGEELDSWSVVINGCVEV--ELSDGRSQMLQV---GDSFGILPT-MEKLYHE 141
++ N + + + +G ++ +G LQ E
Sbjct: 24 HKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGY 83
Query: 142 GVMRTRCDDCQFVCITQTDYYRI 164
+ + I + +
Sbjct: 84 YNLEVISEQATAYVIKINELKEL 106
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme
sensor, catabolite gene activator protein; HET: HEM;
2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Length = 222
Score = 33.4 bits (77), Expect = 0.017
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVE-LSDGRSQMLQ 124
+ + + K G++V + + VV++G + V + + R L
Sbjct: 8 ANVLLSPDGETFFRGFRSKIHAK-GSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLF 66
Query: 125 V---GDSFGIL 132
GD F +
Sbjct: 67 YLTSGDMFCMH 77
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.022
Identities = 18/155 (11%), Positives = 44/155 (28%), Gaps = 34/155 (21%)
Query: 8 VFDDASSNLVQSNGFVSSSLFQSLIVKDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFT 67
F+ + L+ + + L L+ T D+++ LL LK
Sbjct: 261 AFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLD 312
Query: 68 NMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSW-----------SVVINGCVEVELS 116
+ + + + I + + L +W + +I + V
Sbjct: 313 CRPQDLPREVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 117 DGRSQMLQVGDSFGILP--------TMEKLYHEGV 143
+M D + P + ++ + +
Sbjct: 369 AEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVI 400
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 32.7 bits (75), Expect = 0.023
Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV--ELSDGRSQML 123
F ++ + L ++K G V GE ++ +I+GCV++ +G+ ++L
Sbjct: 20 FEPLSPVQLQELLASSDLVNLDK-GAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKIL 78
Query: 124 QV---GDSFGILPTMEKLYHEGVMRT---RC-DDCQFVCITQTDYYRI 164
+V ++F ++ + + Q + Y R
Sbjct: 79 EVTNERNTFAEAM----MFMDTPNYVATAQAVVPSQLFRFSNKAYLRQ 122
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Length = 231
Score = 33.0 bits (76), Expect = 0.025
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV--ELSDGRSQML 123
F N+ + V+ + +V+ E ++ +V G V V GR ++L
Sbjct: 14 FQNVPEDAMREALKVVTERNFQP-DELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVL 72
Query: 124 QV---GDSFG 130
G
Sbjct: 73 GDIYAPGVVG 82
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged
helix-turn-helix motif, DNA binding, transcription
activator; HET: CMP; 2.40A {Thermus thermophilus}
Length = 216
Score = 33.0 bits (76), Expect = 0.028
Identities = 14/104 (13%), Positives = 37/104 (35%), Gaps = 7/104 (6%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL--SDGRSQML 123
F + + + G + G+ + +V +G V + G+ + L
Sbjct: 7 FHGLAPEEVDLALSYFQRRLYPQ-GKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTL 65
Query: 124 QV---GDSFGILPTMEKLYHEGVMRTRCDDCQFVCITQTDYYRI 164
+ G+ FG + +++ +D + + + + DY +
Sbjct: 66 ALLGPGELFGEMSLLDEGERSASAVAV-EDTELLALFREDYLAL 108
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomi 2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A*
Length = 237
Score = 32.3 bits (74), Expect = 0.047
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV--ELSDGRSQML 123
++ AL V+ ++ G + E+ + VVI+G V++ G ++
Sbjct: 19 IRSLPEQHVDALLSQAVWRSYDR-GETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVV 77
Query: 124 QV---GDSFGILP 133
V G+SFG
Sbjct: 78 SVFTRGESFGEAV 90
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA
transcription regulator, DNA binding protein; HET: HEM;
2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Length = 220
Score = 32.2 bits (74), Expect = 0.049
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-DGRSQMLQ 124
+ + K I+ E + +V +G V V L+ + + L
Sbjct: 12 LEVLNSEEYSGVLKEFREQRYSK-KAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLA 70
Query: 125 V---GDSFG 130
+ GD F
Sbjct: 71 ILEAGDIFC 79
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
homodimer, transcription regulator; 3.60A {Pseudomonas
aeruginosa}
Length = 227
Score = 31.5 bits (72), Expect = 0.086
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV--ELSDGRSQML 123
F ++ + L ++K G V GE ++ +I+GCV++ +G+ ++L
Sbjct: 17 FEPLSPVQLQELLASSDLVNLDK-GAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKIL 75
Query: 124 QV---GDSFG 130
+V ++F
Sbjct: 76 EVTNERNTFA 85
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 31.7 bits (72), Expect = 0.090
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 88 KAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHEGVMRTR 147
AG ++ GE D V+ G V V + L G FG + + +
Sbjct: 257 PAGAVICRIGEPGDRMFFVVEGSVSVATPNPV--ELGPGAFFGEMALISGEPRSATVSA- 313
Query: 148 CDDCQFVCITQTDYYRI 164
+ + D+ +
Sbjct: 314 ATTVSLLSLHSADFQML 330
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration;
HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP:
a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A*
3e5q_A 2h6b_A* 2h6c_A
Length = 250
Score = 31.5 bits (72), Expect = 0.093
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 58 DFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV--EL 115
DF + + + + + K G+ V+ GEE+ S ++ G +++
Sbjct: 9 DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAK-GSAVIMPGEEITSMIFLVEGKIKLDIIF 67
Query: 116 SDGRSQMLQV---GDSFGILP 133
DG ++L G L
Sbjct: 68 EDGSEKLLYYAGGNSLIGKLY 88
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Length = 213
Score = 31.4 bits (72), Expect = 0.10
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVEL--SDGRSQML 123
+ K L V K G IV + + ++ +++ G ++ E +G++ +
Sbjct: 7 HHHHHHMDLKKLLPCGKVIVFRK-GEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEI 65
Query: 124 QV---GDSFG 130
Sbjct: 66 DEIKPVQIIA 75
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 31.5 bits (72), Expect = 0.10
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 30 SLIVKDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTL 71
S ++ V C+ DP +R D+ + D + + A T +L
Sbjct: 264 SEELRQLVNMCINPDPEKRP--DVTYVYDVAKRMHACTASSL 303
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural
genomics, joint center for structural genomics; HET:
MSE; 1.90A {Geobacter metallireducens}
Length = 142
Score = 30.7 bits (70), Expect = 0.12
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEVELS-----DGRS 120
F ++T K + + G+++ + + D+ +++ G VE+ S +
Sbjct: 14 FASLTDEQLKDIALISEEKSFPT-GSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAAN 72
Query: 121 QMLQV---GDSFG 130
+ G FG
Sbjct: 73 STVCSVVPGAIFG 85
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery,
DNA binding cyclic A transcription regulator; HET: CMP;
1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A*
3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A*
1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A*
3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 31.0 bits (71), Expect = 0.13
Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV--ELSDGRSQML 123
T + + +++ GE+ ++ ++ G V V + +G+ +L
Sbjct: 4 GKPQTDPTLEWFLSHCHIHKYPS-KSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMIL 62
Query: 124 QV---GDSFGILPTMEKLYHEGVMRTRC----DDCQFVCITQTDYYRI 164
GD G L L+ EG R+ C+ I+ + ++
Sbjct: 63 SYLNQGDFIGELG----LFEEGQERSAWVRAKTACEVAEISYKKFRQL 106
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling;
HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB:
4avb_A* 4avc_A*
Length = 333
Score = 30.8 bits (69), Expect = 0.20
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 54 EQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV 113
++ + F +L + + AG +++ GE S+ ++ +G EV
Sbjct: 9 GARVEDLAGMDVFQGCPAEGLVSLAASVQ-PLRAAAGQVLLRQGEPAVSFLLISSGSAEV 67
Query: 114 ELS--DGRSQM--LQVGDSFGIL 132
DG + + G G +
Sbjct: 68 SHVGDDGVAIIARALPGMIVGEI 90
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 29.9 bits (68), Expect = 0.33
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 88 KAGTIVMNDGEELDSWSVVINGCVEV--ELSDGRSQMLQV---GDSFG 130
A + ++ G+ ++ +I G V + E DGR ++ GD FG
Sbjct: 19 TAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFG 66
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 29.3 bits (66), Expect = 0.48
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 25 SSLFQSLIVKDRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNM 69
++F SLI R L+ +P ER I +++ Q + A N+
Sbjct: 275 YTVFHSLI-----RAMLQVNPEERL--SIAEVVHQLQEIAAARNV 312
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase,
glycyl R hyperthermophilic, unknown function; HET: PGE;
2.90A {Archaeoglobus fulgidus}
Length = 776
Score = 29.5 bits (66), Expect = 0.58
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 35 DRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVM 94
+++ + + K +E+ +T+ +K + +R+A V + I +
Sbjct: 7 EKLIKKVSKPARL----SVERCRLYTESMKQTEGEPMIIRQAKA----LKHVLENIPIQI 58
Query: 95 NDGE 98
D E
Sbjct: 59 LDSE 62
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 28.8 bits (65), Expect = 0.67
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 66 FTNMTLAVRKALCGVMVFAVVEKAGTIVMNDGEELDSWSVVINGCVEV--ELSDGRSQML 123
+ + T V G+ + VI+G V + E D R +L
Sbjct: 19 SLTLDAGTIERFLAHSHRRRYPT-RTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVL 77
Query: 124 QV---GDSFG 130
G+ G
Sbjct: 78 GYFGSGEFVG 87
>1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous
recombination, holliday junction resolving enzyme,
nuclease, archaea; 1.8A {Sulfolobus solfataricus} SCOP:
c.52.1.18 PDB: 1ob9_A
Length = 135
Score = 28.2 bits (62), Expect = 0.77
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 43 KDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVM--NDGEEL 100
++ + + + +LLDF +A++ V EKA I++ ++ +
Sbjct: 58 ENKVKVKEHQVRKLLDFLSMFTMKGVPLIAIKFKQVHEWRVLVPEKAEDIIVTIDNSIPI 117
Query: 101 D 101
+
Sbjct: 118 E 118
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription,
transcription regulation; HET: BOG; 1.90A {Anabaena}
PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Length = 243
Score = 28.5 bits (64), Expect = 0.95
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 88 KAGTIVMNDGEELDSWSVVINGCVEV--ELSDGRSQMLQV---GDSFGILP 133
+ + G+ + ++ G V++ G + + FG+L
Sbjct: 49 ERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLS 99
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 28.5 bits (64), Expect = 1.1
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 34 KDRVRECLEKDPSERTDDDIEQLLD---FTQHLKAFTNMTLAVRKAL 77
D +CL+K+ ER +L+ FT H T++ V+ L
Sbjct: 288 VDFTSQCLKKNSKER--PTYPELMQHPFFTLHESKGTDVASFVKLIL 332
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 28.1 bits (63), Expect = 1.6
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 21/75 (28%)
Query: 34 KDRVRECLEKDPSER--------------------TDDDIEQLLDFTQHLKAFTNMTLAV 73
KD +R+ L PS R T D+ L +++ F +
Sbjct: 254 KDLIRKMLTFHPSLRITATQCLEHPWIQKYSSETPTISDLPSLESAMTNIRQFQAEK-KL 312
Query: 74 RKALCGVMVFAVVEK 88
+A M +
Sbjct: 313 AQAALLYMASKLTTL 327
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 27.8 bits (62), Expect = 1.6
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 30 SLIVKDRVRECLEKDPSER 48
+ + ++E L K+P R
Sbjct: 283 APLTAQAIQEGLRKEPVHR 301
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A
{Homo sapiens} PDB: 3enm_A
Length = 290
Score = 27.6 bits (62), Expect = 1.8
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 30 SLIVKDRVRECLEKDPSERTDDDIEQLLD---FTQHLKAFTNMTLAVRKAL 77
S D +CL+K+ ER +L+ FT H T++ V+ L
Sbjct: 240 SAEFVDFTSQCLKKNSKER--PTYPELMQHPFFTLHESKGTDVASFVKLIL 288
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 27.7 bits (62), Expect = 1.9
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 30 SLIVKDRVRECLEKDPSERTDDDIEQLLDFTQH--LKAFTNMTLAVRKALCGVM 81
S + V++CL KD +R +LL +H +K + + + V VM
Sbjct: 257 SGDFQSFVKDCLTKDHRKRP--KYNKLL---EHSFIKRYETLEVDVASWFKDVM 305
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 27.7 bits (62), Expect = 2.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 30 SLIVKDRVRECLEKDPSER 48
S K + +C E DP +R
Sbjct: 252 SAEAKAFILKCFEPDPDKR 270
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Length = 303
Score = 27.7 bits (62), Expect = 2.0
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
+ + CL+KDP +R
Sbjct: 265 RKMISLCLQKDPEKR 279
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 27.5 bits (61), Expect = 2.3
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 30 SLIVKDRVRECLEKDPSERTDDDIEQLLD 58
++D ++ CL++DP +R I +LL
Sbjct: 294 EKDLQDVLKCCLKRDPKQRI--SIPELLA 320
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Length = 343
Score = 27.4 bits (61), Expect = 2.4
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 30 SLIVKDRVRECLEKDPSERTDDDIEQLLD 58
++D ++ CL++DP +R I +LL
Sbjct: 247 EKDLQDVLKCCLKRDPKQRI--SIPELLA 273
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 27.3 bits (61), Expect = 2.4
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 30 SLIVKDRVRECLEKDPSERTDDDIEQLLD 58
++D ++ CL++DP +R I +LL
Sbjct: 266 EKDLQDVLKCCLKRDPKQRI--SIPELLA 292
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 27.0 bits (60), Expect = 2.8
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 37 VRECLEKDPSERTDDDIEQLLD 58
++ D R+ + L+
Sbjct: 240 AARSVQGDGGIRSASTLLNLMQ 261
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 27.0 bits (60), Expect = 3.1
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 34 KDRVRECLEKDPSER 48
+ + CL K+ S+R
Sbjct: 264 QSFIESCLVKNHSQR 278
>1r9d_A Glycerol dehydratase; radical SAM, lyase; 1.80A {Clostridium
butyricum} SCOP: c.7.1.1 PDB: 1r8w_A 1r9e_A
Length = 787
Score = 27.2 bits (60), Expect = 3.5
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 4/111 (3%)
Query: 35 DRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFA----VVEKAG 90
+R+ + + + + E+ + T+ K +R+AL + +
Sbjct: 11 ERINILKAQILNAKPCVESERAILITESFKQTEGQPAILRRALALKHILENIPITIRDQE 70
Query: 91 TIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHE 141
IV + +E S V + + + GD+F I ++ +
Sbjct: 71 LIVGSLTKEPRSSQVFPEFSNKWLQDELDRLNKRTGDAFQISEESKEKLKD 121
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 26.6 bits (59), Expect = 3.9
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 25 SSLFQSLIVKDRVRECLEKDPSERTDDDIEQLLDFTQHLK 64
SS L+ + DP +R I LL + L+
Sbjct: 273 SSALWQLL-----NSMMTVDPHQRP--HIPLLLSQLEALQ 305
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine
kinase, transferase; 1.80A {Rattus norvegicus} SCOP:
d.144.1.7 PDB: 3fpq_A
Length = 290
Score = 26.5 bits (59), Expect = 3.9
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 29 QSLIVKDRVRECLEKDPSER 48
VK+ + C+ ++ ER
Sbjct: 255 AIPEVKEIIEGCIRQNKDER 274
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 26.5 bits (59), Expect = 3.9
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
+D ++ L+K+P R
Sbjct: 253 RDFLKIALDKNPETR 267
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 26.7 bits (59), Expect = 3.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
KD +R+ L DP+ R
Sbjct: 388 KDFIRKLLLADPNTR 402
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens}
PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A*
3ggf_A* 2xik_A*
Length = 303
Score = 26.5 bits (59), Expect = 4.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
K+ V CL K+PS R
Sbjct: 248 KEFVEACLNKEPSFR 262
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 26.9 bits (60), Expect = 4.1
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 38 RECLEKDPSER---TDDDIEQLLDFTQHLKA 65
R L +P + +++++LLD +L
Sbjct: 403 RAVLGDEPQVSAELSGEELDRLLDPAHYLGQ 433
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 26.9 bits (60), Expect = 4.2
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 38 RECLEKDPSER---TDDDIEQLLDFTQHLKA 65
E L P ++ + L D +L +
Sbjct: 401 FEVLRTMPEVAKPLGEEALRDLTDPRNYLGS 431
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat
protein, ADA protein, ATP-binding, cell cycle, kinase,
nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo
sapiens} PDB: 2wtk_B*
Length = 389
Score = 26.8 bits (59), Expect = 4.2
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 34 KDRVRECLEKDPSER 48
V +CL+++P R
Sbjct: 311 HHFVEQCLQRNPDAR 325
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 26.6 bits (59), Expect = 4.2
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
++ V CL+K P +R
Sbjct: 283 RNFVDSCLQKIPQDR 297
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 26.9 bits (60), Expect = 4.3
Identities = 1/31 (3%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 38 RECLEKDPSER---TDDDIEQLLDFTQHLKA 65
++ + + + ++++ +L
Sbjct: 407 KDIISQVDEVKQYFNPSQLDEIFKPESYLGN 437
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP
complex, transferase; HET: ANP; 2.30A {Homo sapiens}
PDB: 3alo_A*
Length = 327
Score = 26.5 bits (59), Expect = 4.6
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 30 SLIVKDRVRECLEKDPSERTDDDIEQLLD---FTQHLKAFTNMTLAVRKAL 77
S + V CL KD S+R ++LL + + + V K L
Sbjct: 259 SPSFINFVNLCLTKDESKRP--KYKELLKHPFILMYEERAVEVACYVCKIL 307
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 26.6 bits (59), Expect = 4.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 30 SLIVKDRVRECLEKDPSER 48
S D V++CL K P +R
Sbjct: 252 SDNFTDFVKQCLVKSPEQR 270
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase,
kinase, membrane, ATP-binding, prenylation,
serine/threonine-protein kinase, alternative splicing;
HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Length = 304
Score = 26.4 bits (59), Expect = 4.8
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 34 KDRVRECLEKDPSER-TDDDIEQLLD---FTQHLKAFTNMTLAVRKAL 77
KD + LEKDP+ER T E+ L + ++ +V +
Sbjct: 239 KDFICHLLEKDPNERYT---CEKALSHPWIDGNTALHRDIYPSVSLQI 283
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK,
ATP-binding, metal-binding, NUCL binding,
serine/threonine-protein kinase, transferase; 2.00A
{Homo sapiens} PDB: 3kn5_A
Length = 325
Score = 26.5 bits (59), Expect = 4.9
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
KD ++ L DP++R
Sbjct: 248 KDLIQGLLTVDPNKR 262
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2
calmodulin-like EF...; structural genomics, protist
parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa
II}
Length = 345
Score = 26.3 bits (58), Expect = 5.0
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 34 KDRVRECLEKDPSERTDDDIEQLLD---FTQHLKAFTNMT 70
+D + L ++ ER D + L +Q M+
Sbjct: 308 RDLLSNLLNRNVDERF--DAMRALQHPWISQFSDKIYKMS 345
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO;
1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB:
1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Length = 321
Score = 26.3 bits (59), Expect = 5.7
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 49 TDDDIEQLLDFTQHLKAFTNMTLAVRKALCG---VMVFAVVEKAGT 91
T ++I+ +L + LK L G M+F EK T
Sbjct: 16 TGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIF---EKRST 58
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 26.1 bits (58), Expect = 5.9
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 38 RECLEKDPSER---TDDDIEQLLDFTQHLK 64
+E +E D T ++I + ++ H++
Sbjct: 401 KELVEADERITSKLTQEEINECFNYEHHMQ 430
>2y8n_A 4-hydroxyphenylacetate decarboxylase large subuni; lyase, radical
chemistry, metalloenzyme, iron-sulfur center; 1.75A
{Clostridium scatologenes} PDB: 2yaj_A*
Length = 897
Score = 26.6 bits (58), Expect = 6.0
Identities = 15/141 (10%), Positives = 38/141 (26%), Gaps = 19/141 (13%)
Query: 35 DRVRECLEKDPSERTDDDIEQLLDFTQHLKAFTNMTLAVRKALCGVMVFAVVEKAGTIVM 94
+ ++ ++ + + D+E + + + VR+A A T +
Sbjct: 35 ESTQKLMDIYYTLKVTADMEAAYWYNRTWWENDGEVIEVRRAKA----VAASLSHMTPTI 90
Query: 95 NDGEEL---------------DSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLY 139
E+L + N E +++ + DS ++
Sbjct: 91 LPYEKLVMNKTKNVRGAFPFPWVCASFFNAQAEALMNEVDAPAENEADSVSVVGAGGGNV 150
Query: 140 HEGVMRTRCDDCQFVCITQTD 160
E +F +
Sbjct: 151 TESYGNVISIAKKFGMRKEEI 171
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin
dependent protein kinase, Mg synaptic plasticity,
pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB:
3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Length = 351
Score = 26.1 bits (58), Expect = 6.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
KD VR L DP+ER
Sbjct: 264 KDLVRRMLMLDPAER 278
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism,
metal-binding, sugar ISO stress response; HET: MSE;
1.23A {Bacillus subtilis subsp}
Length = 175
Score = 25.7 bits (56), Expect = 6.1
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 3/56 (5%)
Query: 86 VEKAGTIVMNDGEELDSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTMEKLYHE 141
+ +GE+ V+ + L+ G + I P H
Sbjct: 86 CRYGKVYLYVEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIPP---NTKHW 138
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 26.2 bits (58), Expect = 6.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 30 SLIVKDRVRECLEKDPSER 48
S +++D + L +DP ER
Sbjct: 268 SPVLRDFLERMLVRDPQER 286
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET:
824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A*
3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 26.1 bits (58), Expect = 6.2
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 5/24 (20%)
Query: 25 SSLFQSLIVKDRVRECLEKDPSER 48
S F L+ + + DP R
Sbjct: 253 SQEFTELL-----KVMIHPDPERR 271
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid,
reactive cysteine, cytosolic protein; 1.85A {Escherichia
coli}
Length = 256
Score = 26.0 bits (57), Expect = 6.2
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 103 WSVVINGCVEVELSDGRSQMLQVGDSFGI 131
+ I+G L GD I
Sbjct: 205 YLQSIHGKFHALTHHEEKAALTCGDGAFI 233
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 26.1 bits (58), Expect = 6.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
KD VR+ + DP +R
Sbjct: 283 KDLVRKLIVLDPKKR 297
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 26.2 bits (58), Expect = 6.5
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 21/70 (30%)
Query: 34 KDRVRECLEKDPSER--------------------TDDDIEQLLDFTQHLKAFTNMTLAV 73
KD +++ L+ D R + ++ L + ++++ F N +
Sbjct: 269 KDLIKQMLQFDSQRRISAQQALEHPWIKEMCSKKESGIELPSLANAIENMRKFQNSQ-KL 327
Query: 74 RKALCGVMVF 83
+A M
Sbjct: 328 AQAALLYMAS 337
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 26.1 bits (58), Expect = 6.5
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 38 RECLEKDPSER---TDDDIEQLLDFTQHLK 64
E L +D + T +++E+L D + +LK
Sbjct: 389 LEYLLEDEEVKKLVTKEELEELFDISYYLK 418
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 26.1 bits (58), Expect = 6.7
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 25 SSLFQSLIVKDRVRECLEKDPSERTDDDIEQLL 57
SS +S++ LE DP R E LL
Sbjct: 278 SSELRSVL-----VMMLEPDPKLRA--TAEALL 303
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
calmodulin like EF...; calcium dependent protein kinase;
HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
PDB: 2qg5_A*
Length = 277
Score = 26.0 bits (58), Expect = 6.7
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 34 KDRVRECLEKDPSER 48
+ +R L K P +R
Sbjct: 239 ESLIRRLLTKSPKQR 253
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine
kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing
protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB:
3lm0_A*
Length = 327
Score = 26.1 bits (58), Expect = 6.8
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 34 KDRVRECLEKDPSER 48
D ++ L K+P +R
Sbjct: 265 TDFIQSLLVKNPEKR 279
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 25.7 bits (57), Expect = 7.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 30 SLIVKDRVRECLEKDPSER 48
S I +D + CLE D +R
Sbjct: 243 SAIFRDFLNRCLEMDVEKR 261
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia
californica} SCOP: d.144.1.7
Length = 387
Score = 25.8 bits (57), Expect = 7.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 34 KDRVRECLEKDPSER 48
KD ++ L+K+P +R
Sbjct: 282 KDFIKNLLQKEPRKR 296
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 25.8 bits (57), Expect = 7.3
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 34 KDRVRECLEKDPSER 48
KD + L+ DP R
Sbjct: 337 KDLISRLLQVDPEAR 351
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif,
transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A*
2hw6_A
Length = 316
Score = 25.7 bits (57), Expect = 7.5
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 34 KDRVRECLEKDPSER 48
KD + + L +D +R
Sbjct: 273 KDLISKLLVRDAKQR 287
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding,
serine/threonine-protein kinase, CGD3_920, transferase;
HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB:
3dfa_A 3ma6_A*
Length = 287
Score = 25.7 bits (57), Expect = 7.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 34 KDRVRECLEKDPSER 48
KD +R+ L PS R
Sbjct: 254 KDLIRKMLTFHPSLR 268
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 25.8 bits (57), Expect = 7.9
Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 20/74 (27%)
Query: 34 KDRVRECLEKDPSER-------------------TDDDIEQLLDFTQHLKAFTNMTLAVR 74
K+ ++ L D ++R D + L +++ F +
Sbjct: 279 KELIKLMLTYDYNKRCTAEEALNSRWIKKYANNINKSDQKTLCGALSNMRKFEGSQ-KLA 337
Query: 75 KALCGVMVFAVVEK 88
+A + +
Sbjct: 338 QAAILFIGSKLTTL 351
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 25.8 bits (57), Expect = 8.0
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 34 KDRVRECLEKDPSER-TDDDIEQLLD 58
K +R L+ +P++R T I + ++
Sbjct: 299 KMLIRNLLKTEPTQRMT---ITEFMN 321
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 25.7 bits (57), Expect = 8.2
Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 16 LVQSNGFVSSSLFQSLIVKDRVRECLEKDPSER-TDDDIEQLLDFTQHLK 64
+VQ + L Q ++++ + + + +++ +LK
Sbjct: 374 IVQQV---AFDLKQGESFSKKLQKVMHDEHNIILDIPEMDFEGIKKTYLK 420
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 25.8 bits (57), Expect = 8.3
Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 25 SSLFQSLIVKDRVRECLEKDPSERTDDDIEQLLD---FTQHLKAFTNMTLAVRK 75
S +SL+ + +++P +R + +L+ + ++ F + L +
Sbjct: 250 SYDLRSLV-----SQLFKRNPRDRP--SVNSILEKGFIAKRIEKFLSPQLIAEE 296
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 25.7 bits (57), Expect = 8.4
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
K +R L+ +P++R
Sbjct: 234 KMLIRNLLKTEPTQR 248
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 25.8 bits (57), Expect = 8.4
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 34 KDRVRECLEKDPSER 48
K+ + + L K+ S R
Sbjct: 320 KEFISKLLIKEKSWR 334
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 25.7 bits (57), Expect = 8.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 34 KDRVRECLEKDPSER 48
D +++ L KDP R
Sbjct: 256 VDLLKQMLTKDPERR 270
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain,
kinase and RNAse function, ATP binding ssRNA
dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo
sapiens}
Length = 432
Score = 25.9 bits (57), Expect = 8.6
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 22 FVSSSLFQSLIVKDRVRECLEKDPSER 48
+ + +I ++ + + + DP +R
Sbjct: 249 CLHPEKHEDVIARELIEKMIAMDPQKR 275
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Length = 336
Score = 25.8 bits (57), Expect = 8.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
K +R L+ DP+ER
Sbjct: 265 KQLIRLLLKTDPTER 279
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma
brucei}
Length = 110
Score = 24.8 bits (54), Expect = 8.7
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 87 EKAGTIVMNDGEEL-DSWSVVINGCVEVELSDGRSQMLQVGDSFGILPTM 135
E+ +V G+ L V++N C + E+ G +L GD+ + T+
Sbjct: 51 ERPDLLVDQTGQTLRPGILVLVNSC-DAEVVGGMDYVLNDGDTVEFISTL 99
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2,
autoinhibitory, ATP-binding, nucleotide phosphorylation,
serine/threonine-protein kinase; 2.00A {Mus musculus}
PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Length = 342
Score = 25.7 bits (57), Expect = 8.7
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 34 KDRVRECLEKDPSERTDDDIEQLLD 58
KD V + L DP +R +L
Sbjct: 255 KDLVSKMLHVDPHQRL--TAALVLR 277
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding,
nucleotide-binding, serine/threonine-protein kinase,
transferase; HET: TPO; 1.72A {Caenorhabditis elegans}
PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Length = 284
Score = 25.6 bits (57), Expect = 8.8
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 34 KDRVRECLEKDPSER 48
K + L +P +R
Sbjct: 239 KSLIDSMLTVNPKKR 253
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3,
ZIP kinase, ZIPK, DAP kinase like kinase, DLK,
structural genomics consortium; HET: 7CP; 1.24A {Homo
sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A*
3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A*
3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A*
3dgk_A ...
Length = 283
Score = 25.6 bits (57), Expect = 8.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 34 KDRVRECLEKDPSER 48
KD +R L KDP R
Sbjct: 243 KDFIRRLLVKDPKRR 257
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated,
transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A*
2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Length = 362
Score = 25.7 bits (57), Expect = 9.1
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 34 KDRVRECLEKDPSER 48
K + L +P +R
Sbjct: 262 KSLIDSMLTVNPKKR 276
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase,
serine/threonine-protein, ATP-binding,
calmodulin-binding; HET: ATP; 2.20A {Oryctolagus
cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Length = 298
Score = 25.7 bits (57), Expect = 9.2
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 34 KDRVRECLEKDPSER 48
KD V L P +R
Sbjct: 261 KDLVSRFLVVQPQKR 275
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit;
HET: MES; 2.60A {Homo sapiens}
Length = 326
Score = 25.7 bits (57), Expect = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
KD +R L KDP +R
Sbjct: 249 KDFIRRLLVKDPKKR 263
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 25.7 bits (57), Expect = 9.4
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 34 KDRVRECLEKDPSER 48
D V L K+ R
Sbjct: 235 MDFVDRLLVKERKSR 249
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase;
1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A
2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Length = 321
Score = 25.7 bits (57), Expect = 9.5
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 34 KDRVRECLEKDPSER 48
KD +R+ L K+ +R
Sbjct: 250 KDFIRKLLVKETRKR 264
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 25.4 bits (55), Expect = 9.8
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 33 VKDRVRECLEKDPSER 48
VK + L D R
Sbjct: 329 VKTLIGRFLNFDRRRR 344
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.397
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,542,295
Number of extensions: 146208
Number of successful extensions: 548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 123
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)