BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7151
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 59/70 (84%)
Query: 3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
E+ L P + L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct: 358 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 417
Query: 63 FHKDELRLYG 72
FHKDE+R+ G
Sbjct: 418 FHKDEVRILG 427
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 33 KADVIKTHHNDS-----PLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRT 87
K +V+ H DS + + G ++ + + K +LYG QFHPEV LT G+
Sbjct: 149 KEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANESK---KLYGAQFHPEVGLTENGKV 205
Query: 88 MLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLV 127
+LKNFL+D+ G +G FT+++RE E I+ +KE VG KVLV
Sbjct: 206 ILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKVLV 245
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 33 KADVIKTHHNDS-----PLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRT 87
K +V+ H DS + + G ++ + + K +LYG QFHPEV LT G+
Sbjct: 144 KEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANESK---KLYGAQFHPEVGLTENGKV 200
Query: 88 MLKNFLFDVCGLTGNFTL 105
+LKNFL+D+ G +G FT+
Sbjct: 201 ILKNFLYDIAGCSGTFTV 218
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 2 EELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLK 61
E LKL+ + L QGT+ PD+IESA+ A+ KA VIK+HHN L + ++ ++EPLK
Sbjct: 322 EALKLE-DVKWLAQGTIYPDVIESAAS-ATGKAHVIKSHHNVGGLPKEMKM--GLVEPLK 377
Query: 62 DFHKDELRLYGLQFHPEVDL 81
+ KDE+R GL+ D+
Sbjct: 378 ELFKDEVRKIGLELGLPYDM 397
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 59 PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
P +E R YG+QFHPEV T +G ML+ F+ D+C +T ++ + ++E
Sbjct: 164 PFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIRE 223
Query: 119 TVGNMKVLVRKLGLDLGLTPEV 140
VG+ KV+ LGL G+ V
Sbjct: 224 QVGDDKVI---LGLSGGVDSSV 242
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%), Gaps = 4/43 (9%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSE 169
VRK+GL+LGL +++ RHPFPGPGL +RV+ GE ++K+Y +
Sbjct: 384 VRKIGLELGLPYDMLYRHPFPGPGLGVRVL-GE---VKKEYCD 422
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 58 EPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVK 117
PL + R +GLQFHPEV T +G +L +F+ +C N+T K E+ I+ ++
Sbjct: 166 SPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDSIRDIQ 225
Query: 118 ETVGNMKVLVR-KLGLDLGLTPEVVMR 143
E VG +V+V G+D +T +V +
Sbjct: 226 EKVGKEQVIVGLSGGVDSAVTATLVHK 252
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 9 NQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEL 68
N L QGT+ PD+IESA + K +IKTHHN L L + K+IEPL++ KDE+
Sbjct: 330 NVKWLGQGTIYPDVIESAK-TKTGKGHIIKTHHNVGGL--PLNMELKLIEPLRELFKDEV 386
Query: 69 RLYGLQFHPEVDL 81
R GL+ DL
Sbjct: 387 RKLGLELGLPADL 399
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 8/75 (10%)
Query: 82 TNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVV 141
T G+ + +V GL N LK LI+ ++E K VRKLGL+LGL +++
Sbjct: 349 TKTGKGHIIKTHHNVGGLPLNMELK-----LIEPLREL---FKDEVRKLGLELGLPADLI 400
Query: 142 MRHPFPGPGLAIRVI 156
RHPFPGPGLAIR++
Sbjct: 401 YRHPFPGPGLAIRIL 415
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 1 MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
+ + +D N+T L QGTL PD+IES + N +D IKTHHN L + L+ K+ EP
Sbjct: 352 VNNIDIDINKTFLLQGTLYPDIIESKC--SKNLSDTIKTHHNVGGLPKNLK--FKLFEPF 407
Query: 61 KDFHKDELRLYGLQFHPEVDLTN 83
K KD+++ + + ++TN
Sbjct: 408 KYLFKDDVKTLSRELNLPEEITN 430
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 156
V+ L +L L E+ RHPFPGPGLAIRVI
Sbjct: 415 VKTLSRELNLPEEITNRHPFPGPGLAIRVI 444
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNF 103
+ E +YG+Q+HPEV + +G M NF +++C F
Sbjct: 197 YNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQF 236
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 59 PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
P+ + R YG+QFHPEV T +G +L+NFL ++ G+ ++T + EEL++ V+E
Sbjct: 147 PVAAIASPDGRAYGVQFHPEVAHTPKGXQILENFL-ELAGVKRDWTPEHVLEELLREVRE 205
Query: 119 TVGNMKVLV 127
G +VL+
Sbjct: 206 RAGKDRVLL 214
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 156
VR+L L LGL + +RHPFPGPGLA+RV+
Sbjct: 362 VRELALLLGLPDTLRLRHPFPGPGLAVRVL 391
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 12 LLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELR 69
L QGTL PD+IESA + K IK+HHN L L + +++EP + KDE+R
Sbjct: 311 FLAQGTLYPDVIESAGGHGAAK---IKSHHNVGGLPEDL--EFELLEPFRLLFKDEVR 363
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 59 PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
P+ + R YG+QFHPEV T +G +L+NFL ++ G+ ++T + EEL++ V+E
Sbjct: 147 PVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFL-ELAGVKRDWTPEHVLEELLREVRE 205
Query: 119 TVGNMKVLV 127
G +VL+
Sbjct: 206 RAGKDRVLL 214
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 156
VR+L L LGL + +RHPFPGPGLA+RV+
Sbjct: 362 VRELALLLGLPDTLRLRHPFPGPGLAVRVL 391
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 12 LLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELR 69
L QGTL PD+IESA + K IK+HHN L L + +++EP + KDE+R
Sbjct: 311 FLAQGTLYPDVIESAGGHGAAK---IKSHHNVGGLPEDL--EFELLEPFRLLFKDEVR 363
>pdb|2DPL|A Chain A, Crystal Structure Of The Gmp Synthase From Pyrococcus
Horikoshii Ot3
pdb|2DPL|B Chain B, Crystal Structure Of The Gmp Synthase From Pyrococcus
Horikoshii Ot3
pdb|3A4I|A Chain A, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
Horikoshii Ot3
pdb|3A4I|B Chain B, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
Horikoshii Ot3
Length = 308
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 58/157 (36%), Gaps = 71/157 (45%)
Query: 1 MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
EE+ L QGT+ PD IES IK+HHN L L K+IEPL
Sbjct: 112 FEEVAKKIGAEYLIQGTIAPDWIESQGK--------IKSHHNVGGLPEKL--NLKLIEPL 161
Query: 61 KDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETV 120
+D +KDE+R EL K+
Sbjct: 162 RDLYKDEVR-----------------------------------------ELAKF----- 175
Query: 121 GNMKVLVRKLGLDLGLTPE-VVMRHPFPGPGLAIRVI 156
LGL PE + R PFPGPGLA+RVI
Sbjct: 176 ---------LGL-----PEKIYNRMPFPGPGLAVRVI 198
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 59 PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
P++ +EL +YG+QFHPEV T +G +L+NF +CG
Sbjct: 149 PIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFA-KLCG 187
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 59 PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
P++ +EL +YG+QFHPEV T +G +L+NF +CG
Sbjct: 169 PIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFA-KLCG 207
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
H +E +YG+QFHPE T+ G +L NFL
Sbjct: 163 HHEEYPIYGVQFHPESVGTSLGYKILYNFL 192
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
++ F+ +Y QFHPEV+ T GR + +NF+
Sbjct: 163 VQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFI 196
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 30 ASNKADVIKTHHNDSP-LIRALREQGKVIEPLKDFHKDELRL------YGLQFHPEVDLT 82
A D+ + H SP R L G + +PL D H D +R+ GL ++DL
Sbjct: 252 AGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 311
Query: 83 N--EGRTMLKNFLFDVCGLT-GNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPE 139
G L N F+ G T G LK++ + ++Y E +G + + L + LT
Sbjct: 312 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLG-----LDQDDLRVSLTTR 366
Query: 140 VVMRHPFPGPGLAIRV 155
V++ G I+V
Sbjct: 367 VMLTTAGGAKGTVIKV 382
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 30 ASNKADVIKTHHNDSP-LIRALREQGKVIEPLKDFHKDELRL------YGLQFHPEVDLT 82
A D+ + H SP R L G + +PL D H D +R+ GL ++DL
Sbjct: 252 AGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 311
Query: 83 N--EGRTMLKNFLFDVCGLT-GNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPE 139
G L N F+ G T G LK++ + ++Y E +G + + L + LT
Sbjct: 312 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLG-----LDQDDLRVSLTTR 366
Query: 140 VVMRHPFPGPGLAIRV 155
V++ G I+V
Sbjct: 367 VMLTTAGGAKGTVIKV 382
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 30 ASNKADVIKTHHNDSP-LIRALREQGKVIEPLKDFHKDELRL------YGLQFHPEVDLT 82
A D+ + H SP R L G + +PL D H D +R+ GL ++DL
Sbjct: 253 AGASEDIRERLHLSSPDNFRYLNRGGSLKDPLLDDHGDFIRMCTAMKKIGLDDEEKLDLF 312
Query: 83 N--EGRTMLKNFLFDVCGLT-GNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPE 139
G L N F+ G T G LK++ + ++Y E +G + + L + LT
Sbjct: 313 RVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLG-----LDQDDLRVSLTTR 367
Query: 140 VVMRHPFPGPGLAIRV 155
V++ G I+V
Sbjct: 368 VMLTTAGGAKGTVIKV 383
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 54 GKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
G+++ ++D D R+ G QFHPE LT G +L+ L
Sbjct: 151 GEMVMAVRD---DRRRVCGFQFHPESILTTHGARLLEQTL 187
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 66 DELRLYGLQFHPEVDLTNEGRTMLKNFL 93
D R+ G QFHPE LT +G +L+ L
Sbjct: 159 DADRVCGFQFHPESILTTQGARLLEQTL 186
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 75 FHPEVDLTNEGRTMLKNFLFDVCGLTG--NFTLKSREEELIKYVKETVGNMKV------- 125
F P+ + G +FL DV +K RE EL+KY +K+
Sbjct: 187 FKPDRIVIGAGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFANEVG 246
Query: 126 -LVRKLGLDLGLTPEVV------MRHPFPGPGLAIRVIC 157
L ++LG+D E V RH F G GL C
Sbjct: 247 LLAKRLGVDTYRVFEAVGLDKRIGRHYF-GAGLGFGGSC 284
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 11 TLLCQGTLRPDLIESASHLA 30
TL+C GT+ P+++++A+ LA
Sbjct: 206 TLICYGTVMPEVLQAAAELA 225
>pdb|4HL0|A Chain A, Crystal Structure Of Full-length Toxascaris Leonina
Galectin
pdb|4HL0|B Chain B, Crystal Structure Of Full-length Toxascaris Leonina
Galectin
Length = 278
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 6 LDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-EQGKVIEPLKDFH 64
+P QTL+ +G D + +L + AD ND PL ++R ++GK++ F
Sbjct: 19 FEPGQTLIIKGKTAEDSVRFTINLHNTSADF---SGNDVPLHISVRFDEGKIV--FNTFS 73
Query: 65 KDEL 68
K E
Sbjct: 74 KGEW 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,947,178
Number of Sequences: 62578
Number of extensions: 248022
Number of successful extensions: 681
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 36
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)