Query psy7151
Match_columns 188
No_of_seqs 246 out of 2220
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 19:30:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02347 GMP synthetase 99.9 1.9E-27 4.1E-32 222.8 11.3 137 16-157 100-264 (536)
2 PRK00074 guaA GMP synthase; Re 99.9 2.9E-26 6.3E-31 213.6 11.9 136 17-157 90-250 (511)
3 KOG1622|consensus 99.9 9.4E-26 2E-30 205.5 9.6 131 37-175 142-283 (552)
4 COG0512 PabA Anthranilate/para 99.9 8.5E-23 1.8E-27 169.1 4.3 79 15-95 87-190 (191)
5 PRK09522 bifunctional glutamin 99.7 5.4E-17 1.2E-21 152.4 7.0 96 16-113 91-208 (531)
6 KOG0026|consensus 99.7 2.8E-17 6.1E-22 134.5 3.3 85 12-98 102-216 (223)
7 PRK07765 para-aminobenzoate sy 99.6 1.9E-16 4.1E-21 132.8 5.8 96 16-114 90-209 (214)
8 PRK08007 para-aminobenzoate sy 99.6 1.9E-15 4.2E-20 124.0 5.6 77 16-94 86-186 (187)
9 PLN02889 oxo-acid-lyase/anthra 99.6 2.6E-15 5.6E-20 148.0 5.7 80 16-97 176-336 (918)
10 TIGR00566 trpG_papA glutamine 99.5 1.4E-14 3.1E-19 118.8 5.5 77 16-94 86-187 (188)
11 PRK07649 para-aminobenzoate/an 99.5 4.7E-14 1E-18 116.8 5.9 80 16-97 86-189 (195)
12 PRK06774 para-aminobenzoate sy 99.5 4.5E-14 9.8E-19 115.6 4.9 77 16-94 86-190 (191)
13 PRK08857 para-aminobenzoate sy 99.5 7.6E-14 1.7E-18 114.7 5.6 78 16-95 86-192 (193)
14 TIGR00888 guaA_Nterm GMP synth 99.4 3.6E-13 7.9E-18 109.8 7.0 82 17-100 85-188 (188)
15 PRK05637 anthranilate synthase 99.4 2.4E-13 5.2E-18 113.9 5.6 60 35-96 138-205 (208)
16 CHL00101 trpG anthranilate syn 99.4 2.9E-13 6.4E-18 111.1 5.2 77 16-94 86-187 (190)
17 PRK06895 putative anthranilate 99.4 4E-13 8.7E-18 110.1 5.8 78 16-94 86-187 (190)
18 KOG1224|consensus 99.4 2.6E-13 5.7E-18 126.7 3.8 79 16-96 109-217 (767)
19 PRK14607 bifunctional glutamin 99.3 3.8E-12 8.2E-17 119.7 7.2 92 16-112 87-202 (534)
20 PLN02335 anthranilate synthase 99.3 4.2E-12 9.1E-17 107.2 6.5 81 16-96 105-213 (222)
21 KOG1622|consensus 99.3 6.3E-13 1.4E-17 122.1 1.1 123 2-186 327-451 (552)
22 PRK05670 anthranilate synthase 99.2 1.4E-11 3.1E-16 100.7 6.8 78 16-95 86-187 (189)
23 TIGR01815 TrpE-clade3 anthrani 99.2 1.3E-11 2.7E-16 119.8 6.4 83 16-99 602-711 (717)
24 PRK00758 GMP synthase subunit 99.2 1.7E-11 3.7E-16 99.6 6.1 77 17-95 82-180 (184)
25 TIGR01823 PabB-fungal aminodeo 99.2 1.6E-11 3.4E-16 119.5 6.4 80 16-97 100-205 (742)
26 cd01743 GATase1_Anthranilate_S 99.2 1.9E-11 4.2E-16 99.2 5.8 76 16-93 85-184 (184)
27 COG0519 GuaA GMP synthase, PP- 99.2 9.3E-12 2E-16 108.8 4.0 101 10-175 122-222 (315)
28 cd01742 GATase1_GMP_Synthase T 99.2 2E-11 4.3E-16 98.3 4.9 74 18-93 86-181 (181)
29 COG0519 GuaA GMP synthase, PP- 99.2 1.3E-11 2.7E-16 108.0 2.6 63 102-169 1-65 (315)
30 PRK13566 anthranilate synthase 99.1 6.4E-11 1.4E-15 115.0 6.4 80 16-96 612-718 (720)
31 COG0518 GuaA GMP synthase - Gl 99.1 3.7E-11 8E-16 100.3 4.0 81 17-101 94-198 (198)
32 PRK11366 puuD gamma-glutamyl-g 99.1 8.1E-11 1.8E-15 101.2 3.4 61 35-97 177-245 (254)
33 cd01745 GATase1_2 Subgroup of 99.0 1.3E-10 2.9E-15 95.3 3.2 67 17-93 115-189 (189)
34 cd01748 GATase1_IGP_Synthase T 99.0 3.3E-10 7.2E-15 93.0 4.7 72 19-93 100-198 (198)
35 cd01744 GATase1_CPSase Small c 99.0 3.1E-10 6.7E-15 92.1 4.3 76 16-93 83-178 (178)
36 CHL00188 hisH imidazole glycer 99.0 7.2E-10 1.6E-14 93.1 5.5 33 60-95 177-209 (210)
37 PRK12564 carbamoyl phosphate s 98.9 2.4E-09 5.2E-14 96.7 5.2 78 16-95 262-359 (360)
38 PF00117 GATase: Glutamine ami 98.9 2.1E-09 4.5E-14 87.0 3.9 79 16-95 86-191 (192)
39 PRK13181 hisH imidazole glycer 98.8 4.1E-09 8.9E-14 86.8 5.0 73 19-94 100-198 (199)
40 COG2071 Predicted glutamine am 98.8 2.9E-09 6.2E-14 91.4 3.4 65 30-96 165-238 (243)
41 PRK14004 hisH imidazole glycer 98.8 7.8E-09 1.7E-13 86.8 5.7 29 66-95 181-209 (210)
42 PRK12838 carbamoyl phosphate s 98.8 7.8E-09 1.7E-13 93.2 5.9 79 16-96 251-350 (354)
43 TIGR01855 IMP_synth_hisH imida 98.8 8.4E-09 1.8E-13 85.1 5.6 73 19-94 100-195 (196)
44 PRK13146 hisH imidazole glycer 98.8 8.1E-09 1.8E-13 86.2 5.2 28 67-95 180-207 (209)
45 PRK13152 hisH imidazole glycer 98.8 1.2E-08 2.6E-13 84.4 6.0 72 19-94 102-200 (201)
46 PRK13141 hisH imidazole glycer 98.7 2E-08 4.4E-13 83.0 5.8 74 19-95 101-201 (205)
47 TIGR01368 CPSaseIIsmall carbam 98.7 1.9E-08 4.1E-13 90.9 5.5 79 16-96 257-356 (358)
48 PRK00768 nadE NAD synthetase; 98.6 2.1E-08 4.6E-13 87.4 3.1 69 86-159 4-85 (268)
49 PRK13170 hisH imidazole glycer 98.6 6.8E-08 1.5E-12 79.9 5.5 27 67-94 169-195 (196)
50 PTZ00323 NAD+ synthase; Provis 98.6 5E-08 1.1E-12 86.1 4.3 64 98-161 19-91 (294)
51 PF02540 NAD_synthase: NAD syn 98.5 2.2E-08 4.8E-13 85.7 1.1 50 108-157 1-54 (242)
52 COG0171 NadE NAD synthase [Coe 98.5 9E-08 2E-12 83.5 3.3 69 103-171 3-80 (268)
53 PRK13143 hisH imidazole glycer 98.5 3.1E-07 6.7E-12 76.0 6.0 28 67-95 170-197 (200)
54 CHL00197 carA carbamoyl-phosph 98.4 1.8E-07 3.9E-12 85.3 4.6 37 60-96 337-374 (382)
55 COG0118 HisH Glutamine amidotr 98.4 4.1E-07 9E-12 76.5 5.9 75 18-96 102-203 (204)
56 TIGR01737 FGAM_synth_I phospho 98.4 1.9E-07 4E-12 79.0 3.0 36 60-95 186-226 (227)
57 PRK00919 GMP synthase subunit 98.3 5E-07 1.1E-11 80.2 3.1 42 103-147 2-43 (307)
58 PLN02347 GMP synthetase 98.3 6.6E-07 1.4E-11 84.7 3.7 93 6-159 332-426 (536)
59 PF07722 Peptidase_C26: Peptid 98.3 5.9E-07 1.3E-11 75.5 3.0 44 33-78 167-217 (217)
60 cd01741 GATase1_1 Subgroup of 98.2 1E-06 2.2E-11 71.4 3.7 47 37-93 137-188 (188)
61 PRK13525 glutamine amidotransf 98.2 2.4E-06 5.2E-11 70.3 5.5 55 34-95 128-186 (189)
62 PLN02771 carbamoyl-phosphate s 98.2 1E-06 2.2E-11 81.2 3.5 67 16-84 324-409 (415)
63 PLN02617 imidazole glycerol ph 98.1 3.9E-06 8.4E-11 79.6 6.1 36 60-98 177-212 (538)
64 PRK13527 glutamine amidotransf 98.1 4.1E-06 8.8E-11 69.1 5.2 50 40-96 144-197 (200)
65 cd01746 GATase1_CTP_Synthase T 98.1 1.9E-06 4.1E-11 73.6 2.7 59 35-93 165-235 (235)
66 cd00553 NAD_synthase NAD+ synt 98.1 2E-06 4.4E-11 73.3 2.6 56 104-159 2-61 (248)
67 PRK13142 hisH imidazole glycer 98.1 2.8E-06 6.1E-11 70.8 3.2 28 67-95 160-187 (192)
68 PRK13980 NAD synthetase; Provi 98.0 4.5E-06 9.8E-11 72.0 4.0 56 103-158 8-67 (265)
69 cd01747 GATase1_Glutamyl_Hydro 98.0 1.2E-05 2.6E-10 70.1 5.8 83 18-100 108-249 (273)
70 PRK05380 pyrG CTP synthetase; 98.0 4.4E-06 9.6E-11 79.0 2.8 63 31-97 457-527 (533)
71 TIGR00884 guaA_Cterm GMP synth 97.9 6.4E-06 1.4E-10 73.1 2.3 47 107-156 1-50 (311)
72 PRK09065 glutamine amidotransf 97.8 2.1E-05 4.5E-10 67.0 4.4 30 59-94 169-198 (237)
73 PRK00876 nadE NAD synthetase; 97.8 2.3E-05 5.1E-10 70.2 4.8 57 102-158 9-70 (326)
74 PRK06186 hypothetical protein; 97.8 1.3E-05 2.8E-10 68.7 2.9 58 35-96 162-226 (229)
75 PRK06490 glutamine amidotransf 97.8 4.4E-05 9.4E-10 65.3 5.8 49 37-94 138-191 (239)
76 PRK13981 NAD synthetase; Provi 97.8 2E-05 4.4E-10 74.1 3.8 53 106-158 261-317 (540)
77 TIGR00337 PyrG CTP synthase. C 97.7 2.6E-05 5.5E-10 73.9 3.0 60 31-94 457-524 (525)
78 PLN02327 CTP synthase 97.6 5.5E-05 1.2E-09 72.0 3.9 66 31-98 467-548 (557)
79 TIGR03800 PLP_synth_Pdx2 pyrid 97.5 8.4E-05 1.8E-09 61.1 3.8 42 47-93 138-183 (184)
80 PRK05665 amidotransferase; Pro 97.5 0.00017 3.6E-09 61.8 5.5 43 36-81 143-190 (240)
81 PRK08250 glutamine amidotransf 97.5 0.0001 2.2E-09 62.8 3.6 64 16-80 98-183 (235)
82 TIGR00552 nadE NAD+ synthetase 97.5 0.00013 2.9E-09 62.3 4.1 48 106-156 3-56 (250)
83 PRK03619 phosphoribosylformylg 97.3 0.00015 3.1E-09 61.2 3.1 35 60-94 179-218 (219)
84 PRK02628 nadE NAD synthetase; 97.3 0.00014 3.1E-09 70.5 3.4 53 106-158 342-403 (679)
85 PRK07053 glutamine amidotransf 97.2 0.00028 6E-09 60.1 3.5 32 49-81 146-182 (234)
86 PRK07567 glutamine amidotransf 97.2 0.0003 6.4E-09 60.2 3.4 34 47-81 156-194 (242)
87 TIGR00884 guaA_Cterm GMP synth 97.1 0.0003 6.5E-09 62.5 2.3 83 10-157 118-200 (311)
88 PLN02339 NAD+ synthase (glutam 97.0 0.00043 9.2E-09 67.7 3.1 37 107-143 330-366 (700)
89 COG0505 CarA Carbamoylphosphat 97.0 0.00078 1.7E-08 61.2 4.5 83 16-98 264-364 (368)
90 cd01749 GATase1_PB Glutamine A 96.9 0.0017 3.7E-08 52.9 4.8 47 40-93 133-183 (183)
91 cd01997 GMP_synthase_C The C-t 96.8 0.00087 1.9E-08 59.3 2.8 89 10-161 101-189 (295)
92 PLN02832 glutamine amidotransf 96.6 0.002 4.4E-08 55.8 3.3 26 68-96 189-214 (248)
93 TIGR03573 WbuX N-acetyl sugar 95.9 0.0084 1.8E-07 53.7 3.9 55 99-156 34-93 (343)
94 KOG0370|consensus 95.7 0.0051 1.1E-07 62.0 1.6 68 60-127 315-384 (1435)
95 KOG1559|consensus 94.8 0.033 7.1E-07 48.9 3.7 21 60-80 251-271 (340)
96 TIGR00268 conserved hypothetic 94.8 0.024 5.2E-07 48.5 2.9 39 116-157 5-46 (252)
97 COG0482 TrmU Predicted tRNA(5- 94.7 0.012 2.7E-07 53.5 1.0 35 122-159 3-39 (356)
98 COG1606 ATP-utilizing enzymes 94.6 0.049 1.1E-06 47.7 4.5 40 114-156 8-51 (269)
99 PRK00919 GMP synthase subunit 94.5 0.032 6.9E-07 49.7 3.2 28 130-157 171-198 (307)
100 PF03054 tRNA_Me_trans: tRNA m 94.2 0.012 2.6E-07 53.5 -0.2 33 124-159 2-36 (356)
101 cd01997 GMP_synthase_C The C-t 94.0 0.02 4.2E-07 50.7 0.8 27 129-155 3-32 (295)
102 KOG2805|consensus 93.6 0.044 9.6E-07 49.5 2.2 32 123-157 6-39 (377)
103 cd01996 Alpha_ANH_like_III Thi 93.6 0.073 1.6E-06 41.4 3.2 28 129-156 5-35 (154)
104 PRK14665 mnmA tRNA-specific 2- 93.5 0.062 1.3E-06 48.8 3.0 31 123-156 6-38 (360)
105 cd01712 ThiI ThiI is required 93.2 0.072 1.6E-06 42.6 2.6 27 129-155 3-31 (177)
106 PRK00074 guaA GMP synthase; Re 93.0 0.079 1.7E-06 50.1 3.0 29 130-158 373-401 (511)
107 KOG0623|consensus 92.7 0.093 2E-06 48.2 2.9 33 60-95 175-207 (541)
108 PRK14664 tRNA-specific 2-thiou 92.5 0.074 1.6E-06 48.4 2.0 32 123-157 6-39 (362)
109 cd01991 Asn_Synthase_B_C The C 91.8 0.26 5.7E-06 41.3 4.4 19 122-143 15-33 (269)
110 PRK13795 hypothetical protein; 91.2 0.26 5.7E-06 47.9 4.3 37 104-143 223-261 (636)
111 cd01986 Alpha_ANH_like Adenine 91.0 0.086 1.9E-06 38.6 0.6 15 129-143 2-16 (103)
112 TIGR00364 exsB protein. This p 91.0 0.096 2.1E-06 42.9 0.9 29 129-157 2-32 (201)
113 PRK10696 tRNA 2-thiocytidine b 90.9 0.19 4.2E-06 43.0 2.8 19 122-143 29-47 (258)
114 PF00733 Asn_synthase: Asparag 90.7 0.21 4.5E-06 40.9 2.8 33 108-143 2-35 (255)
115 TIGR02432 lysidine_TilS_N tRNA 90.7 0.14 3.1E-06 41.1 1.7 15 129-143 3-17 (189)
116 COG0037 MesJ tRNA(Ile)-lysidin 90.5 0.3 6.5E-06 41.8 3.7 20 123-145 22-41 (298)
117 PRK05253 sulfate adenylyltrans 90.2 0.37 8E-06 42.8 4.0 35 105-142 9-44 (301)
118 PRK08349 hypothetical protein; 89.2 0.2 4.3E-06 41.1 1.4 17 129-145 4-20 (198)
119 cd01998 tRNA_Me_trans tRNA met 89.2 0.17 3.7E-06 45.5 1.1 28 129-156 3-32 (349)
120 cd01993 Alpha_ANH_like_II This 89.0 0.18 3.8E-06 39.9 1.0 14 129-142 3-16 (185)
121 COG0504 PyrG CTP synthase (UTP 89.0 0.22 4.9E-06 47.3 1.8 39 60-98 488-528 (533)
122 PRK00143 mnmA tRNA-specific 2- 88.9 0.15 3.2E-06 45.9 0.5 27 130-156 5-33 (346)
123 TIGR00420 trmU tRNA (5-methyla 88.8 0.15 3.3E-06 46.0 0.5 28 129-156 4-33 (352)
124 PF01171 ATP_bind_3: PP-loop f 88.6 0.23 5.1E-06 40.0 1.4 14 129-142 3-16 (182)
125 PRK01565 thiamine biosynthesis 88.5 0.24 5.3E-06 45.2 1.7 26 130-155 181-208 (394)
126 cd01992 PP-ATPase N-terminal d 87.9 0.22 4.8E-06 39.6 0.9 17 129-145 3-19 (185)
127 cd01995 ExsB ExsB is a transcr 87.7 0.23 5E-06 39.3 0.9 28 129-156 3-32 (169)
128 PTZ00077 asparagine synthetase 87.5 0.45 9.7E-06 45.9 2.9 33 108-143 222-255 (586)
129 TIGR00342 thiazole biosynthesi 87.4 0.32 7E-06 44.1 1.7 27 130-156 177-205 (371)
130 cd01990 Alpha_ANH_like_I This 87.4 0.22 4.7E-06 40.6 0.5 28 129-156 2-32 (202)
131 cd01713 PAPS_reductase This do 86.9 0.3 6.5E-06 37.3 1.1 15 129-143 3-17 (173)
132 TIGR01536 asn_synth_AEB aspara 86.6 0.68 1.5E-05 42.8 3.4 13 131-143 259-271 (467)
133 PRK13794 hypothetical protein; 86.6 0.48 1E-05 44.6 2.4 36 105-143 228-265 (479)
134 PRK08384 thiamine biosynthesis 86.4 0.35 7.5E-06 44.4 1.4 20 123-145 181-200 (381)
135 PRK10660 tilS tRNA(Ile)-lysidi 85.9 0.82 1.8E-05 42.4 3.6 27 114-143 6-33 (436)
136 PRK11106 queuosine biosynthesi 85.4 0.57 1.2E-05 40.1 2.1 29 130-158 6-36 (231)
137 PRK09431 asnB asparagine synth 85.3 0.81 1.7E-05 43.8 3.3 31 110-143 214-245 (554)
138 PRK14561 hypothetical protein; 85.3 0.31 6.8E-06 40.2 0.5 17 129-145 4-20 (194)
139 PLN02549 asparagine synthase ( 85.3 0.71 1.5E-05 44.5 2.9 33 108-143 210-243 (578)
140 PRK13820 argininosuccinate syn 83.9 0.61 1.3E-05 43.1 1.8 31 124-157 4-38 (394)
141 PLN00200 argininosuccinate syn 83.4 0.76 1.6E-05 42.6 2.2 30 124-156 7-39 (404)
142 PRK04527 argininosuccinate syn 83.3 0.5 1.1E-05 43.8 0.9 31 123-156 3-35 (400)
143 PRK00509 argininosuccinate syn 83.3 0.79 1.7E-05 42.4 2.2 33 123-158 3-38 (399)
144 PRK08576 hypothetical protein; 82.9 0.84 1.8E-05 42.7 2.3 32 108-143 221-252 (438)
145 TIGR03108 eps_aminotran_1 exos 81.9 1.4 3E-05 42.4 3.4 13 131-143 264-276 (628)
146 COG1365 Predicted ATPase (PP-l 81.3 1.1 2.5E-05 38.6 2.3 26 114-142 52-77 (255)
147 TIGR00032 argG argininosuccina 81.1 0.99 2.1E-05 41.6 2.0 27 129-155 3-31 (394)
148 TIGR02039 CysD sulfate adenyly 79.9 2.7 5.8E-05 37.4 4.2 33 107-142 3-36 (294)
149 PRK01175 phosphoribosylformylg 79.8 1.6 3.5E-05 38.0 2.8 38 60-97 208-258 (261)
150 PRK06850 hypothetical protein; 79.7 2.8 6.1E-05 40.1 4.6 35 106-143 16-52 (507)
151 TIGR03104 trio_amidotrans aspa 79.3 2 4.4E-05 41.2 3.6 27 114-143 251-278 (589)
152 cd01994 Alpha_ANH_like_IV This 78.9 0.75 1.6E-05 38.1 0.4 17 130-146 4-20 (194)
153 COG0367 AsnB Asparagine syntha 77.8 2.1 4.5E-05 41.0 3.1 15 131-145 236-250 (542)
154 PF02568 ThiI: Thiamine biosyn 77.4 1.2 2.7E-05 37.3 1.3 20 123-145 4-23 (197)
155 PRK01269 tRNA s(4)U8 sulfurtra 75.7 2.6 5.7E-05 39.5 3.2 16 130-145 182-197 (482)
156 PRK05368 homoserine O-succinyl 75.0 2.1 4.6E-05 38.2 2.2 21 60-80 219-239 (302)
157 PF06508 QueC: Queuosine biosy 74.7 1.1 2.4E-05 37.5 0.4 31 129-159 3-35 (209)
158 cd01999 Argininosuccinate_Synt 74.5 1.4 3.1E-05 40.5 1.0 28 129-156 2-32 (385)
159 PRK02090 phosphoadenosine phos 72.5 4.5 9.8E-05 34.3 3.6 20 124-146 42-61 (241)
160 PRK08557 hypothetical protein; 69.5 3.8 8.1E-05 38.2 2.6 37 105-142 159-198 (417)
161 TIGR03679 arCOG00187 arCOG0018 68.0 1.4 3.1E-05 37.0 -0.5 17 130-146 2-18 (218)
162 cd01984 AANH_like Adenine nucl 63.8 2.6 5.7E-05 29.3 0.3 15 129-143 2-16 (86)
163 TIGR03183 DNA_S_dndC putative 61.2 6.6 0.00014 37.0 2.5 27 113-142 2-30 (447)
164 COG0603 Predicted PP-loop supe 60.3 5.7 0.00012 34.1 1.8 17 131-147 8-24 (222)
165 cd01740 GATase1_FGAR_AT Type 1 57.9 6.9 0.00015 33.2 1.9 33 60-92 195-237 (238)
166 PF01507 PAPS_reduct: Phosphoa 56.0 4.2 9.1E-05 31.4 0.3 14 129-142 3-16 (174)
167 PRK12563 sulfate adenylyltrans 54.7 19 0.00041 32.4 4.2 35 105-142 19-54 (312)
168 PRK05370 argininosuccinate syn 54.5 12 0.00027 35.3 3.1 43 116-162 5-47 (447)
169 COG0047 PurL Phosphoribosylfor 51.6 16 0.00035 31.6 3.1 37 60-96 189-230 (231)
170 PF01174 SNO: SNO glutamine am 49.6 12 0.00026 31.4 2.1 28 67-96 159-186 (188)
171 TIGR00434 cysH phosophoadenyly 48.8 17 0.00037 29.9 2.8 28 111-142 3-30 (212)
172 KOG2387|consensus 48.0 7.4 0.00016 37.1 0.6 22 61-82 510-532 (585)
173 KOG0571|consensus 45.0 23 0.0005 33.8 3.3 33 108-142 210-242 (543)
174 PF06058 DCP1: Dcp1-like decap 44.2 36 0.00078 26.3 3.8 65 12-80 44-110 (122)
175 TIGR00289 conserved hypothetic 44.2 9.8 0.00021 32.4 0.7 14 130-143 5-18 (222)
176 COG0311 PDX2 Predicted glutami 38.5 44 0.00096 28.2 3.7 27 66-95 163-189 (194)
177 TIGR00732 dprA DNA protecting 37.7 39 0.00086 28.5 3.4 27 128-154 77-104 (220)
178 COG0301 ThiI Thiamine biosynth 35.3 25 0.00054 32.6 1.9 14 131-144 181-194 (383)
179 PF13507 GATase_5: CobB/CobQ-l 32.6 49 0.0011 28.8 3.2 36 60-95 209-258 (259)
180 PF02481 DNA_processg_A: DNA r 30.9 39 0.00085 28.3 2.3 49 81-154 55-104 (212)
181 KOG0573|consensus 30.8 24 0.00053 33.6 1.1 16 131-146 256-271 (520)
182 PF08497 Radical_SAM_N: Radica 30.5 86 0.0019 28.2 4.4 54 81-146 30-90 (302)
183 smart00427 H2B Histone H2B. 30.4 41 0.00088 25.0 2.0 24 74-97 13-36 (89)
184 PF00764 Arginosuc_synth: Argi 30.1 22 0.00047 33.0 0.6 15 129-143 1-15 (388)
185 KOG2303|consensus 29.9 42 0.00091 32.7 2.5 41 102-142 322-366 (706)
186 TIGR02057 PAPS_reductase phosp 29.8 52 0.0011 27.8 2.9 29 110-142 14-42 (226)
187 COG0175 CysH 3'-phosphoadenosi 29.1 57 0.0012 28.1 3.1 30 110-143 28-57 (261)
188 KOG4720|consensus 28.5 1.1E+02 0.0024 28.2 4.8 76 73-174 56-133 (391)
189 smart00864 Tubulin Tubulin/Fts 27.9 2.3E+02 0.0049 22.9 6.3 49 107-156 67-122 (192)
190 PLN00158 histone H2B; Provisio 27.9 47 0.001 25.9 2.1 24 74-97 39-62 (116)
191 PF00091 Tubulin: Tubulin/FtsZ 27.7 76 0.0016 26.2 3.5 55 98-152 90-160 (216)
192 PTZ00463 histone H2B; Provisio 26.4 54 0.0012 25.6 2.2 23 74-96 40-62 (117)
193 TIGR03212 uraD_N-term-dom puta 26.1 86 0.0019 27.7 3.7 37 69-105 246-282 (297)
194 PRK13717 conjugal transfer pro 26.1 2E+02 0.0043 22.8 5.3 55 84-138 51-112 (128)
195 PRK10605 N-ethylmaleimide redu 24.9 99 0.0021 28.0 4.0 31 107-137 210-246 (362)
196 PF01606 Arteri_env: Arterivir 24.3 14 0.00031 30.9 -1.4 12 69-80 118-129 (214)
197 PLN02411 12-oxophytodienoate r 23.2 95 0.0021 28.4 3.5 43 88-130 191-239 (391)
198 COG2117 Predicted subunit of t 22.6 40 0.00086 28.2 0.8 11 132-142 7-17 (198)
199 COG3969 Predicted phosphoadeno 22.4 1.1E+02 0.0023 28.5 3.6 50 105-158 9-66 (407)
200 KOG0894|consensus 22.4 46 0.00099 28.8 1.2 57 100-169 99-155 (244)
201 COG1158 Rho Transcription term 22.2 1.2E+02 0.0025 28.4 3.8 36 107-142 243-297 (422)
202 PRK10736 hypothetical protein; 21.8 1.8E+02 0.0038 26.9 4.9 55 80-159 117-172 (374)
203 PF10034 Dpy19: Q-cell neurobl 21.1 1.3E+02 0.0029 29.7 4.2 57 99-165 497-553 (642)
204 PF13808 DDE_Tnp_1_assoc: DDE_ 20.6 1.5E+02 0.0032 21.3 3.5 48 86-143 23-70 (90)
205 PF06908 DUF1273: Protein of u 20.5 3.2E+02 0.007 22.3 5.8 47 112-159 31-82 (177)
No 1
>PLN02347 GMP synthetase
Probab=99.94 E-value=1.9e-27 Score=222.80 Aligned_cols=137 Identities=26% Similarity=0.391 Sum_probs=111.8
Q ss_pred eeecCCeEEecCcccCCcceeEEeeeccccccccccc-------------------cceecc-----cccccccccccEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE-------------------QGKVIE-----PLKDFHKDELRLY 71 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~-------------------~s~vi~-----pi~Ai~~~~~~i~ 71 (188)
+.++|+.|.+.+.+.||..... .+.+.+||+++|. ++.+++ +++|+++.++++|
T Consensus 100 a~alGG~V~~~~~~e~G~~~v~--i~~~~~Lf~~l~~~~~~~v~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~~~~~~i~ 177 (536)
T PLN02347 100 VQKLGGEVKPGEKQEYGRMEIR--VVCGSQLFGDLPSGETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRERRIY 177 (536)
T ss_pred HHHcCCEEEecCCcccceEEEE--EcCCChhhhcCCCCceEEEEEEEEEEeeeCCCCCEEEEEeCCCcEEEEEECCCCEE
Confidence 3468999999988889987643 2445556666642 222222 4789998889999
Q ss_pred EEeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhC-CCcEEEEeeccccCCChhhHhhcCC---C
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVG-NMKVLVRKLGLDLGLTPEVVMRHPF---P 147 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg-~~kVi~~~~GlSGGvDSavva~~~~---p 147 (188)
|+|||||+.+|+.|.+||+||+..+|+|+++|+|++++++.++.||++++ +++|++ |+||||||+|+|.++. .
T Consensus 178 GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~~~~~~~~~i~~i~~~~~~~~~vvv---alSGGVDSsvla~l~~~alG 254 (536)
T PLN02347 178 GLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKATVGPDEHVIC---ALSGGVDSTVAATLVHKAIG 254 (536)
T ss_pred EEEccCCCCccchHHHHHHHHHHHHhCcCCCcCcchHHHHHHHHHHHHhccCCeEEE---EecCChhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999 567888 9999999999994443 3
Q ss_pred CCceEEEEec
Q psy7151 148 GPGLAIRVIC 157 (188)
Q Consensus 148 ~~~L~v~~~~ 157 (188)
++.+++-+..
T Consensus 255 ~~v~av~id~ 264 (536)
T PLN02347 255 DRLHCVFVDN 264 (536)
T ss_pred CcEEEEEEeC
Confidence 5677777653
No 2
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.93 E-value=2.9e-26 Score=213.58 Aligned_cols=136 Identities=32% Similarity=0.536 Sum_probs=107.0
Q ss_pred eecCCeEEecCcccCCccee-----------------EEeeeccccccccccccceecc-----cccccccccccEEEEe
Q psy7151 17 TLRPDLIESASHLASNKADV-----------------IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQ 74 (188)
Q Consensus 17 ~~~g~~I~~~~~~~HGk~~~-----------------V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQ 74 (188)
.++||.+.+.+.+.+|.+.. +++.|++. +..+|.++.+++ +++|+++.+.++||+|
T Consensus 90 ~~lGG~V~~~~~~e~G~~~i~i~~~~~Lf~~l~~~~~v~~~H~d~--V~~lp~g~~vlA~s~~~~v~ai~~~~~~i~GvQ 167 (511)
T PRK00074 90 HQLGGKVERAGKREYGRAELEVDNDSPLFKGLPEEQDVWMSHGDK--VTELPEGFKVIASTENCPIAAIANEERKFYGVQ 167 (511)
T ss_pred HHhCCeEEecCCcccceEEEEEcCCChhhhcCCCceEEEEECCeE--EEecCCCcEEEEEeCCCCEEEEEeCCCCEEEEe
Confidence 35778888777666775433 22233333 334444444433 5889998888999999
Q ss_pred ecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCC---CCCce
Q psy7151 75 FHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPF---PGPGL 151 (188)
Q Consensus 75 FHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~---p~~~L 151 (188)
||||+.+|+.|.+||+||+..||+|+++|+|++++++.+++||++++++++++ |+|||+||+|++..+. ..+.+
T Consensus 168 FHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~~~~~~~~l~~~v~~~~vlv---a~SGGvDS~vll~ll~~~lg~~v~ 244 (511)
T PRK00074 168 FHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQVGDKKVIL---GLSGGVDSSVAAVLLHKAIGDQLT 244 (511)
T ss_pred CCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHhcCCCcEEE---EeCCCccHHHHHHHHHHHhCCceE
Confidence 99999999999999999999999999999999999999999999999999988 9999999999994433 34567
Q ss_pred EEEEec
Q psy7151 152 AIRVIC 157 (188)
Q Consensus 152 ~v~~~~ 157 (188)
++.+..
T Consensus 245 av~vd~ 250 (511)
T PRK00074 245 CVFVDH 250 (511)
T ss_pred EEEEeC
Confidence 776653
No 3
>KOG1622|consensus
Probab=99.93 E-value=9.4e-26 Score=205.46 Aligned_cols=131 Identities=41% Similarity=0.668 Sum_probs=116.8
Q ss_pred EEeeeccccccccccccceecc-----cccccccccccEEEEeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHH
Q psy7151 37 IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEE 111 (188)
Q Consensus 37 V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~ 111 (188)
|+..|.++ +.++|.++.+++ |++++.+..+++||+|||||+.+|+.|+++++||+..||+|.+||+|+++.++
T Consensus 142 VlltHgds--l~~v~~g~kv~a~s~n~~va~i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmenre~e 219 (552)
T KOG1622|consen 142 VLLTHGDS--LSKVPEGFKVVAFSGNKPVAGILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMENREEE 219 (552)
T ss_pred eeeccccc--hhhccccceeEEeecCcceeeehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcchhhhhHH
Confidence 55567777 778888888775 58899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeeccccCCChhhHh----hcCCCCCceEEEEecCCchhhhhhhhh--hhhHHH
Q psy7151 112 LIKYVKETVGNMKVLVRKLGLDLGLTPEVVM----RHPFPGPGLAIRVICGEERYIEKDYSE--TQVLVK 175 (188)
Q Consensus 112 iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva----~~~~p~~~L~v~~~~~~~~~~~~~~~~--~~~~~~ 175 (188)
.|.|||+.||+.+|++ .+||||||+|+| +++.|++..++. .+|+++|+.+++ ...|++
T Consensus 220 ~I~~i~k~vG~~~Vl~---~vSGgvdStV~a~Ll~~alg~~R~~ai~---vdNG~mrk~Ea~~V~~tl~~ 283 (552)
T KOG1622|consen 220 CINEIRKWVGDYKVLV---AVSGGVDSTVCAALLRRALGPDRVHAIH---VDNGFMRKKEAEQVEKTLVY 283 (552)
T ss_pred HHHHHHHHhcccceEE---EecCCchHHHHHHHHHHhhCCCceEEEE---ecccchhhhHHHHHHHHHHH
Confidence 9999999999999999 999999999999 677788888876 689999999998 344444
No 4
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.86 E-value=8.5e-23 Score=169.12 Aligned_cols=79 Identities=30% Similarity=0.459 Sum_probs=72.3
Q ss_pred eeeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceeccc------------------cccccccccc
Q psy7151 15 QGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVIEP------------------LKDFHKDELR 69 (188)
Q Consensus 15 ~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~p------------------i~Ai~~~~~~ 69 (188)
.|.+||+.|.++++|+|||+|.+ +|+.+++|+++| |||+++.+ +||++|++.|
T Consensus 87 i~~~fGg~V~~a~~~~HGK~s~i--~h~g~~iF~glp~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~~p 164 (191)
T COG0512 87 IAEAFGGKVVRAKEPMHGKTSII--THDGSGLFAGLPNPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKKLP 164 (191)
T ss_pred HHHHhCCEEEecCCCcCCeeeee--ecCCcccccCCCCCCEEEeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCCCC
Confidence 46799999999999999999977 788899999998 88988642 8899999999
Q ss_pred EEEEeecccccCChhhHHHHHHHHHH
Q psy7151 70 LYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 70 i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
+|||||||||+.|+.|.+|++||+..
T Consensus 165 i~gvQFHPESilT~~G~~il~Nfl~~ 190 (191)
T COG0512 165 IYGVQFHPESILTEYGHRILENFLRL 190 (191)
T ss_pred EEEEecCCccccccchHHHHHHHHhh
Confidence 99999999999999999999999964
No 5
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.68 E-value=5.4e-17 Score=152.35 Aligned_cols=96 Identities=26% Similarity=0.300 Sum_probs=81.7
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceecc--------------cccccccccccEEEEe
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVIE--------------PLKDFHKDELRLYGLQ 74 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~--------------pi~Ai~~~~~~i~GVQ 74 (188)
+.+||+.|.+.+++.||+++.+ .|.+..+|.++| ||++.+. .++|+++.++++||||
T Consensus 91 a~a~GG~V~~~~~~~~G~~~~i--~~~~~~lf~~~~~~~~v~~~Hs~~v~~lP~~l~vlA~sd~~v~ai~~~~~~i~GVQ 168 (531)
T PRK09522 91 VEAYGGYVGQAGEILHGKASSI--EHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQ 168 (531)
T ss_pred HHhcCCEEEeCCceeeeeEEEE--eecCCccccCCCCCcEEEEehheecccCCCCcEEEEecCCCEEEEEECCCCEEEEE
Confidence 4689999999999999999888 577777888775 6665542 2678999888999999
Q ss_pred ecccccCChhhHHHHHHHHH-HhhCCCCCcccchHHHHHH
Q psy7151 75 FHPEVDLTNEGRTMLKNFLF-DVCGLTGNFTLKSREEELI 113 (188)
Q Consensus 75 FHPE~~~t~~G~~il~nFl~-~i~~~~~~W~~~~~ie~iI 113 (188)
||||+++|++|.+||+||+. .+|+|+++|+|.++++++.
T Consensus 169 FHPEs~~T~~G~~il~NFl~~~~~~~~~~~~~~~~l~~~~ 208 (531)
T PRK09522 169 FHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILEKLY 208 (531)
T ss_pred ecCccccCcchHHHHHHHHHHHhhcCCCCCCHHHHHHHhh
Confidence 99999999999999999996 5689999999988887764
No 6
>KOG0026|consensus
Probab=99.66 E-value=2.8e-17 Score=134.48 Aligned_cols=85 Identities=29% Similarity=0.484 Sum_probs=73.6
Q ss_pred eeEeeeecCCeEEecC-cccCCcceeEEeeecc---cccccccc-------ccceecc----c--------------ccc
Q psy7151 12 LLCQGTLRPDLIESAS-HLASNKADVIKTHHND---SPLIRALR-------EQGKVIE----P--------------LKD 62 (188)
Q Consensus 12 ~~~~g~~~g~~I~~~~-~~~HGk~~~V~s~H~~---~~Lf~~lp-------~~s~vi~----p--------------i~A 62 (188)
+-|.+.+||+.|.+++ +++|||+|.| +|+. .++|+++| |||++.. | +||
T Consensus 102 lQCi~e~fGGkv~~a~~~i~HGK~S~i--~~D~~~~~G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMg 179 (223)
T KOG0026|consen 102 LQCIGEAFGGKIVRSPFGVMHGKSSMV--HYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMA 179 (223)
T ss_pred hhhhhhhhCcEEeccCcceeecccccc--ccCCccccccccCCCCCeEEEeeeeeeeecccCCccceeeeEeccCcEEEe
Confidence 3478899999999999 9999999999 6776 68999998 7777643 1 788
Q ss_pred ccccccc-EEEEeecccccCChhhHHHHHHHHHHhhC
Q psy7151 63 FHKDELR-LYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98 (188)
Q Consensus 63 i~~~~~~-i~GVQFHPE~~~t~~G~~il~nFl~~i~~ 98 (188)
.+|+.+. +-|||||||++.|++|+.+++||+....+
T Consensus 180 aRHkKY~~ieGVQfHPESIlteeGk~~irNflni~~~ 216 (223)
T KOG0026|consen 180 ARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEK 216 (223)
T ss_pred eeccccccccceeecchhhhhhhhHHHHHHHHHhccc
Confidence 9998876 99999999999999999999999987643
No 7
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.64 E-value=1.9e-16 Score=132.81 Aligned_cols=96 Identities=30% Similarity=0.470 Sum_probs=75.1
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------------------ccceecc-----cccccccccccEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------------------EQGKVIE-----PLKDFHKDELRLY 71 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------------------~~s~vi~-----pi~Ai~~~~~~i~ 71 (188)
+.++|+.|.+.+.+.||.+..+ .|...++|.+++ ++..+++ +++|+++.++++|
T Consensus 90 a~a~GG~v~~~~~~~~g~~~~v--~~~~~~~~~~~~~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~vqa~~~~~~~i~ 167 (214)
T PRK07765 90 GVAFGATVDRAPELLHGKTSSV--HHTGVGVLAGLPDPFTATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRELPIH 167 (214)
T ss_pred HHHhCCEEeeCCCCccCceeEE--EECCCccccCCCCccEEEecchheEecccCCCceEEEEEcCCCcEEEEEeCCCCEE
Confidence 4689999999988889987766 344444454443 3323222 3789998888899
Q ss_pred EEeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHH
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIK 114 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~ 114 (188)
|||||||+++|+.|.++++||+ .+|+++++|++.+++++.++
T Consensus 168 gvQfHPE~~~t~~g~~~l~~f~-~~~~~~~~~~~~~~~~~~~~ 209 (214)
T PRK07765 168 GVQFHPESVLTEGGHRMLANWL-TVCGWAPDEALVRRLENEVA 209 (214)
T ss_pred EEeeCCCcccCcchHHHHHHHH-HHhccccchhhcccccchhh
Confidence 9999999999999999999999 68999999999998776543
No 8
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.58 E-value=1.9e-15 Score=124.01 Aligned_cols=77 Identities=29% Similarity=0.450 Sum_probs=64.1
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceecc-----------------cccccccccccEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVIE-----------------PLKDFHKDELRLY 71 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~-----------------pi~Ai~~~~~~i~ 71 (188)
+.+||+.|.+.+.+.||+++.+ .|...++|++++ +|++.+. +++|+++.+.++|
T Consensus 86 a~a~Gg~v~~~~~~~~g~~~~v--~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a~~~~~~~i~ 163 (187)
T PRK08007 86 AQAFGGKVVRAAKVMHGKTSPI--THNGEGVFRGLANPLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQWDLE 163 (187)
T ss_pred HHHcCCEEEeCCCcccCCceEE--EECCCCcccCCCCCcEEEEcchhEEccCCCCCCeEEEEEeCCCcEEEEEeCCCCEE
Confidence 5689999999999999998887 566666776664 4554331 3779999888999
Q ss_pred EEeecccccCChhhHHHHHHHHH
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl~ 94 (188)
|||||||+++|+.|.+||+||++
T Consensus 164 GvQfHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 164 GVQFHPESILSEQGHQLLANFLH 186 (187)
T ss_pred EEEeCCcccCCcchHHHHHHHhh
Confidence 99999999999999999999985
No 9
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.56 E-value=2.6e-15 Score=147.95 Aligned_cols=80 Identities=30% Similarity=0.349 Sum_probs=70.5
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-----------ccceecc--------------------------
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-----------EQGKVIE-------------------------- 58 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-----------~~s~vi~-------------------------- 58 (188)
+.+||+.|.+++.++||+++.| .|...+||+++| |||+++.
T Consensus 176 ~~~~Gg~V~~~~~~~HG~~s~I--~h~~~~lF~glp~~~~~~f~v~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~ 253 (918)
T PLN02889 176 GYVHGARIVHAPEPVHGRLSEI--EHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQ 253 (918)
T ss_pred HHhcCceEEeCCCceeeeeeeE--eecCchhhcCCCcCCCCCceEEeCCCcccccCCCCCceEEEEEECCCccccccccc
Confidence 5789999999999999999999 688888888775 7887651
Q ss_pred --------------------------------------------cccccccccccEEEEeecccccCChhhHHHHHHHHH
Q psy7151 59 --------------------------------------------PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 59 --------------------------------------------pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~ 94 (188)
-+||++|.++|+||||||||+++|++|.+||+||+.
T Consensus 254 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~~GVQfHPESi~t~~G~~l~~nF~~ 333 (918)
T PLN02889 254 KSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHYGLQFHPESIATCYGRQIFKNFRE 333 (918)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCceEEEEeCCccccCchhHHHHHHHHH
Confidence 278999999999999999999999999999999998
Q ss_pred Hhh
Q psy7151 95 DVC 97 (188)
Q Consensus 95 ~i~ 97 (188)
...
T Consensus 334 ~~~ 336 (918)
T PLN02889 334 ITQ 336 (918)
T ss_pred HHH
Confidence 554
No 10
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.51 E-value=1.4e-14 Score=118.85 Aligned_cols=77 Identities=30% Similarity=0.468 Sum_probs=60.3
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c------cccccccccccE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E------PLKDFHKDELRL 70 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~------pi~Ai~~~~~~i 70 (188)
+.++|+.|.+.+.+.||.++.| .+.+++++.+++ +|++.+ + .++|+++.++++
T Consensus 86 ~~~~GG~v~~~~~~~~g~~~~v--~~~~~~~~~~l~~~~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~~~i 163 (188)
T TIGR00566 86 GQAFGGDVVRANTVMHGKTSEI--EHNGAGIFRGLFNPLTATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRDLPL 163 (188)
T ss_pred HHHcCCEEeeCCCccccceEEE--EECCCccccCCCCCcEEEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCCCCE
Confidence 4679999999999999988777 455544555543 333322 1 477889888899
Q ss_pred EEEeecccccCChhhHHHHHHHHH
Q psy7151 71 YGLQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 71 ~GVQFHPE~~~t~~G~~il~nFl~ 94 (188)
||||||||+.+|+.|.+||+||+.
T Consensus 164 ~gvQfHPE~~~t~~G~~il~nfl~ 187 (188)
T TIGR00566 164 EGVQFHPESILSEQGHQLLANFLH 187 (188)
T ss_pred EEEEeCCCccCCcccHHHHHHHHh
Confidence 999999999999999999999985
No 11
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.48 E-value=4.7e-14 Score=116.81 Aligned_cols=80 Identities=21% Similarity=0.438 Sum_probs=64.1
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c-----cccccccccccEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E-----PLKDFHKDELRLY 71 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~-----pi~Ai~~~~~~i~ 71 (188)
+.++|+.|.+.+.+.||....+ .+.+..||+++| +|++.+ + +++|+++.++++|
T Consensus 86 a~~lGg~V~~~~~~~~G~~~~i--~~~~~~lf~~~~~~~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a~~~~~~~i~ 163 (195)
T PRK07649 86 AQVFGGEVVRAERLMHGKTSLM--HHDGKTIFSDIPNPFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMAIRHKTLPIE 163 (195)
T ss_pred HHHcCCEEeeCCCcccCCeEEE--EECCChhhcCCCCCCEEEEechheEecccCCCCeEEEEEcCCCcEEEEEECCCCEE
Confidence 4678999999999999998777 455566777765 343322 1 3778998888999
Q ss_pred EEeecccccCChhhHHHHHHHHHHhh
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFLFDVC 97 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl~~i~ 97 (188)
|+|||||+.+|+.|..||+||+....
T Consensus 164 gvQFHPE~~~t~~g~~il~nfl~~~~ 189 (195)
T PRK07649 164 GVQFHPESIMTSHGKELLQNFIRKYS 189 (195)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHhH
Confidence 99999999999999999999997553
No 12
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.47 E-value=4.5e-14 Score=115.65 Aligned_cols=77 Identities=30% Similarity=0.455 Sum_probs=58.8
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c---------ccccccccc
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E---------PLKDFHKDE 67 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~---------pi~Ai~~~~ 67 (188)
+.+||+.|.+.+++.||....+ .|.+..||++++ +|++.+ + .++|+++++
T Consensus 86 a~~~GG~v~~~~~~~~G~~~~~--~~~~~~lf~~l~~~~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~ 163 (191)
T PRK06774 86 GQAFGARVVRARQVMHGKTSAI--CHSGQGVFRGLNQPLTVTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRT 163 (191)
T ss_pred HHHhCCEEEeCCcceecceEEE--EecCchhhcCCCCCcEEEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCC
Confidence 4578999999988889987766 455555666654 444333 1 134567777
Q ss_pred ccEEEEeecccccCChhhHHHHHHHHH
Q psy7151 68 LRLYGLQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 68 ~~i~GVQFHPE~~~t~~G~~il~nFl~ 94 (188)
.++||||||||+.+|+.|.+||+||+.
T Consensus 164 ~~i~GvQfHPE~~~~~~G~~i~~nf~~ 190 (191)
T PRK06774 164 LPLEGVQFHPESILSEQGHQLLDNFLK 190 (191)
T ss_pred CCEEEEEECCCcCCCccHHHHHHHHhh
Confidence 799999999999999999999999985
No 13
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.46 E-value=7.6e-14 Score=114.72 Aligned_cols=78 Identities=24% Similarity=0.390 Sum_probs=59.1
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------------------ccceecc----------cccccccc
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------------------EQGKVIE----------PLKDFHKD 66 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------------------~~s~vi~----------pi~Ai~~~ 66 (188)
+.++|+.|.+.+.+.||.+..+ .|.+..+|.+++ .++.+++ .++|+++.
T Consensus 86 a~a~Gg~v~~~~~~~~G~~~~~--~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~ 163 (193)
T PRK08857 86 AQVFGGQVVRARQVMHGKTSPI--RHTGRSVFKGLNNPLTVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHK 163 (193)
T ss_pred HHHhCCEEEeCCCceeCceEEE--EECCCcccccCCCccEEEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeC
Confidence 4678999999999999986555 344445565443 3333321 25677788
Q ss_pred cccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151 67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
++|+||||||||+.+|+.|++||+||+..
T Consensus 164 ~~pi~gvQfHPE~~~t~~g~~i~~nFl~~ 192 (193)
T PRK08857 164 TLPIEAVQFHPESIKTEQGHQLLANFLAR 192 (193)
T ss_pred CCCEEEEeeCCCcCCCcchHHHHHHHHhh
Confidence 88999999999999999999999999964
No 14
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.42 E-value=3.6e-13 Score=109.76 Aligned_cols=82 Identities=34% Similarity=0.571 Sum_probs=59.5
Q ss_pred eecCCeEEecCcccCCcceeEEeeeccccccccc-----------------cccceecc-----cccccccccccEEEEe
Q psy7151 17 TLRPDLIESASHLASNKADVIKTHHNDSPLIRAL-----------------REQGKVIE-----PLKDFHKDELRLYGLQ 74 (188)
Q Consensus 17 ~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~l-----------------p~~s~vi~-----pi~Ai~~~~~~i~GVQ 74 (188)
.++|+.+.+.+.+.+|..... ...+..||.++ |.+..+++ +++|+++.+.++||+|
T Consensus 85 ~~lgg~v~~~~~~~~g~~~v~--~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~~~~~~g~Q 162 (188)
T TIGR00888 85 KQLGGEVGRAEKREYGKAELE--ILDEDDLFRGLPDESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEEKPIYGVQ 162 (188)
T ss_pred HhcCceEecCCCccceeEEEE--EecCCHhhcCCCCCcEEEeEccceeecCCCCCEEEEECCCCCeEEEEECCCCEEEEe
Confidence 457888888877777754332 12233445444 33333322 4788888877999999
Q ss_pred ecccccCChhhHHHHHHHHHHhhCCC
Q psy7151 75 FHPEVDLTNEGRTMLKNFLFDVCGLT 100 (188)
Q Consensus 75 FHPE~~~t~~G~~il~nFl~~i~~~~ 100 (188)
||||+.+++.|.+||+||+...|+|+
T Consensus 163 fHPE~~~~~~g~~i~~~f~~~~~~~~ 188 (188)
T TIGR00888 163 FHPEVTHTEYGNELLENFVYDVCGCE 188 (188)
T ss_pred eCCccCCChhhHHHHHHHHHHhhCCC
Confidence 99999999999999999999899986
No 15
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.41 E-value=2.4e-13 Score=113.85 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=45.7
Q ss_pred eeEEeeeccccccccccccceecc--------cccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151 35 DVIKTHHNDSPLIRALREQGKVIE--------PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV 96 (188)
Q Consensus 35 ~~V~s~H~~~~Lf~~lp~~s~vi~--------pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i 96 (188)
..|+++|++. +..+|+++.+++ .++|+++.++++||||||||+.+|++|.+||+||+..+
T Consensus 138 ~~V~~~H~~~--v~~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~nfl~~~ 205 (208)
T PRK05637 138 VPIARYHSLG--CVVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSRCVEQL 205 (208)
T ss_pred eEEEEechhh--hhcCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHHHHHHH
Confidence 3455555555 555666655543 14677888889999999999999999999999999764
No 16
>CHL00101 trpG anthranilate synthase component 2
Probab=99.40 E-value=2.9e-13 Score=111.12 Aligned_cols=77 Identities=31% Similarity=0.440 Sum_probs=59.5
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccce------------ecc-----ccccccccccc-E
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGK------------VIE-----PLKDFHKDELR-L 70 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~------------vi~-----pi~Ai~~~~~~-i 70 (188)
+.++|+.|.+.+.+.||....+ .+....+|.++| +|++ +++ +++|+++.+++ +
T Consensus 86 a~~~Gg~V~~~~~~~~g~~~~~--~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~~~~~~~~i 163 (190)
T CHL00101 86 GYLFGGKIIKAPKPMHGKTSKI--YHNHDDLFQGLPNPFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKKYKML 163 (190)
T ss_pred HHHhCCEEEECCCcccCceeeE--eeCCcHhhccCCCceEEEcchhheeecccCCCceEEEEEcCCCcEEEEEeCCCCCE
Confidence 4579999999999999988766 334444665544 2322 221 36788888888 9
Q ss_pred EEEeecccccCChhhHHHHHHHHH
Q psy7151 71 YGLQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 71 ~GVQFHPE~~~t~~G~~il~nFl~ 94 (188)
||||||||+.+|++|.+||+||+.
T Consensus 164 ~gvQfHPE~~~~~~g~~l~~nf~~ 187 (190)
T CHL00101 164 RGIQFHPESLLTTHGQQILRNFLS 187 (190)
T ss_pred EEEEeCCccCCChhHHHHHHHHHh
Confidence 999999999999999999999986
No 17
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.39 E-value=4e-13 Score=110.06 Aligned_cols=78 Identities=22% Similarity=0.409 Sum_probs=61.9
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceecc-----------------cccccccccccEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVIE-----------------PLKDFHKDELRLY 71 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~-----------------pi~Ai~~~~~~i~ 71 (188)
+.++|+.|.+.+.+.||....++. ..++.||+++| +|++.+. .++|+++.++|+|
T Consensus 86 a~~~Gg~V~~~~~~~~g~~~~v~~-~~~~~l~~~~~~~~~v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i~a~~~~~~pi~ 164 (190)
T PRK06895 86 CEFFGGELYNLNNVRHGQQRPLKV-RSNSPLFDGLPEEFNIGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKTLPIY 164 (190)
T ss_pred HHHhCCeEeecCCCccCceEEEEE-CCCChhhhcCCCceEEEcchhheecccccCCCeEEEEECCCCcEEEEEECCCCEE
Confidence 456899999988889999877743 34566888776 3433331 2668888888899
Q ss_pred EEeecccccCChhhHHHHHHHHH
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl~ 94 (188)
|+|||||+..|+.|.+||+||+.
T Consensus 165 GvQFHPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 165 GVQFHPESYISEFGEQILRNWLA 187 (190)
T ss_pred EEEeCCCcCCCcchHHHHHHHHh
Confidence 99999999999999999999985
No 18
>KOG1224|consensus
Probab=99.37 E-value=2.6e-13 Score=126.69 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=69.9
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-----------ccceeccc-------------------cccccc
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-----------EQGKVIEP-------------------LKDFHK 65 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-----------~~s~vi~p-------------------i~Ai~~ 65 (188)
|.+.|+.|+.+.+|.||+.+.+ +|+++.+|.++| |||+++.+ +|++.+
T Consensus 109 ~l~hGA~v~~~n~p~HGrvs~i--~~~~~~~f~gi~sg~~~~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~ 186 (767)
T KOG1224|consen 109 GLVHGAHVVHANEPVHGRVSGI--EHDGNILFSGIPSGRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMH 186 (767)
T ss_pred hhhcccceecCCCcccceeeeE--EecCcEEEccCCCCCcccceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeec
Confidence 6788999999999999999999 888887777776 88888652 678888
Q ss_pred ccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151 66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFDV 96 (188)
Q Consensus 66 ~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i 96 (188)
+.+|.||+|||||++.|+.|.+||+||++.-
T Consensus 187 ~~fPhfG~qyHPES~~s~~g~~lfkNFl~lt 217 (767)
T KOG1224|consen 187 SSFPHFGLQYHPESIASTYGSQLFKNFLDLT 217 (767)
T ss_pred cCCCccceeeChHHhhhhhhHHHHHHHHHhh
Confidence 9999999999999999999999999999743
No 19
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.30 E-value=3.8e-12 Score=119.66 Aligned_cols=92 Identities=32% Similarity=0.447 Sum_probs=70.0
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c-----cccccccccccEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E-----PLKDFHKDELRLY 71 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~-----pi~Ai~~~~~~i~ 71 (188)
+.+||+.|.+.+...||.+..+ .+.+.++|.++| +|++.+ + +++|+++.++++|
T Consensus 87 a~a~Gg~V~~~~~~~~G~~~~v--~~~~~~lf~~~~~~~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~a~~~~~~pi~ 164 (534)
T PRK14607 87 GYAFGGKIVHAKRILHGKTSPI--DHNGKGLFRGIPNPTVATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKEHPIF 164 (534)
T ss_pred HHHcCCeEecCCccccCCceeE--EECCCcchhcCCCCcEEeeccchheecccCCCCeEEEEEcCCCCEEEEEECCCCEE
Confidence 4578999999999999998877 455566676654 333321 1 3789999888999
Q ss_pred EEeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHH
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEEL 112 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~i 112 (188)
|||||||+.+|+.|..||+||+.... ..+++.++++++
T Consensus 165 GvQFHPE~~~t~~g~~i~~nFl~~~~---~~~~~~~~i~~l 202 (534)
T PRK14607 165 GVQFHPESILTEEGKRILKNFLNYQR---EEIDIKSYLKKL 202 (534)
T ss_pred EEEeCCCCCCChhHHHHHHHHHHHhh---ccCCHHHHHHHh
Confidence 99999999999999999999998533 355666666554
No 20
>PLN02335 anthranilate synthase
Probab=99.30 E-value=4.2e-12 Score=107.16 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=59.8
Q ss_pred eeecCCeEEecCc-ccCCcceeEEeee-cccccccccc-------ccceec-------------c-----cccccccccc
Q psy7151 16 GTLRPDLIESASH-LASNKADVIKTHH-NDSPLIRALR-------EQGKVI-------------E-----PLKDFHKDEL 68 (188)
Q Consensus 16 g~~~g~~I~~~~~-~~HGk~~~V~s~H-~~~~Lf~~lp-------~~s~vi-------------~-----pi~Ai~~~~~ 68 (188)
+.++|+.+.+.+. +.||....+.... .+..||.++| +|++.+ + .++|+++.+.
T Consensus 105 a~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~ 184 (222)
T PLN02335 105 GEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKY 184 (222)
T ss_pred HHHhCCEEEeCCCccccCceeeeEECCCCCChhhhCCCCCCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecCC
Confidence 3578999999875 5799888773211 1235777765 333322 1 3778998876
Q ss_pred c-EEEEeecccccCChhhHHHHHHHHHHh
Q psy7151 69 R-LYGLQFHPEVDLTNEGRTMLKNFLFDV 96 (188)
Q Consensus 69 ~-i~GVQFHPE~~~t~~G~~il~nFl~~i 96 (188)
+ +||||||||+.+|++|..||+||+..+
T Consensus 185 ~~i~GvQfHPE~~~~~~g~~i~~nF~~~~ 213 (222)
T PLN02335 185 KHIQGVQFHPESIITTEGKTIVRNFIKII 213 (222)
T ss_pred CCEEEEEeCCCCCCChhHHHHHHHHHHHH
Confidence 6 999999999999999999999999754
No 21
>KOG1622|consensus
Probab=99.29 E-value=6.3e-13 Score=122.05 Aligned_cols=123 Identities=56% Similarity=0.883 Sum_probs=105.5
Q ss_pred ccCCCCCCCe--eeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccceecccccccccccccEEEEeecccc
Q psy7151 2 EELKLDPNQT--LLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEV 79 (188)
Q Consensus 2 ~~~~~~~~~~--~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~ 79 (188)
++++..++++ +++|||+|++.|++++....|++.++|++|++.+|.+.+..-..+++|+..+...+.
T Consensus 327 ~~l~~k~~~~~~flaQgtL~Pd~ieS~s~~g~~~a~tIKThhn~~~L~r~lrklgK~ieplk~~~kDEv----------- 395 (552)
T KOG1622|consen 327 SELNKKHGEKESFLAQGTLRPDLIESASVYGSGHAETIKTHHNDTGLIRDLRKLGKVIEPLKDFHKDEV----------- 395 (552)
T ss_pred HHhhhccCccceeeecccccchhhhhccccCCchhhhhhcccccchHHHHHHHhcccCchhHHHHHHHH-----------
Confidence 5677888888 999999999999999988888999999999999999988665577777766554332
Q ss_pred cCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCC
Q psy7151 80 DLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159 (188)
Q Consensus 80 ~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~ 159 (188)
+.+|--.|++-.++.|+|||||+|++|++|..
T Consensus 396 ------------------------------------------------r~lgk~lGlp~~Lv~rhPfpGPgLaIRvL~~~ 427 (552)
T KOG1622|consen 396 ------------------------------------------------RELGKDLGLPESLVPRHPFPGPGLAIRVLCAV 427 (552)
T ss_pred ------------------------------------------------HHhhhhcCCchhhhccCCCCCCCeEEEEeecc
Confidence 66688889999999999999999999999988
Q ss_pred chhhhhhhhhhhhHHHHHhhhhhhhhh
Q psy7151 160 ERYIEKDYSETQVLVKIIVEYDQMFKK 186 (188)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
+.. ++++.+.+++....|.+.++|
T Consensus 428 ~~~---~~~~~~ii~~~~~~f~~~i~~ 451 (552)
T KOG1622|consen 428 TAR---DLPQLEIIRKVDRIFIKSIRK 451 (552)
T ss_pred ccc---cchHHHHHHHHHHHHHHHhcc
Confidence 766 888999999999999888763
No 22
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.24 E-value=1.4e-11 Score=100.69 Aligned_cols=78 Identities=31% Similarity=0.465 Sum_probs=58.6
Q ss_pred eeecCCeEEecCcccCCcceeEEeeeccccccccc-------------------cccceecc-----cccccccccccEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRAL-------------------REQGKVIE-----PLKDFHKDELRLY 71 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~l-------------------p~~s~vi~-----pi~Ai~~~~~~i~ 71 (188)
+.++|+.|.+.+.+.||.+..+. +....+|+++ |.+..+++ +++|+++.+.++|
T Consensus 86 a~alGg~v~~~~~~~~g~~~~v~--~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~~~~~~~~~ 163 (189)
T PRK05670 86 GEAFGGKVVRAKEIMHGKTSPIE--HDGSGIFAGLPNPFTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGVRHKELPIY 163 (189)
T ss_pred HHHhCCEEEecCCcccCceeEEE--eCCCchhccCCCCcEEEcchhheeccccCCCceEEEEEeCCCcEEEEEECCCCEE
Confidence 35689999999888899776663 3444455444 33322222 4788988878999
Q ss_pred EEeecccccCChhhHHHHHHHHHH
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
|+|||||+..+++|..||+||++.
T Consensus 164 gvQfHPE~~~~~~g~~i~~~F~~~ 187 (189)
T PRK05670 164 GVQFHPESILTEHGHKLLENFLEL 187 (189)
T ss_pred EEeeCCCcCCCcchHHHHHHHHHh
Confidence 999999999999999999999974
No 23
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.22 E-value=1.3e-11 Score=119.84 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=64.6
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c-----cccccccccccEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E-----PLKDFHKDELRLY 71 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~-----pi~Ai~~~~~~i~ 71 (188)
+.+||+.|.+.+.+.||+.+.|.. .....||.++| +|++.+ + +++|+++.+.++|
T Consensus 602 a~a~GG~V~~~~~p~~G~~~~V~~-~~~~~Lf~~lp~~~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~v~Ai~~~~~~i~ 680 (717)
T TIGR01815 602 VEAFGGALDVLPEPVHGKASRIRV-LGPDALFAGLPERLTVGRYHSLFARRDRLPAELTVTAESADGLIMAIEHRRLPLA 680 (717)
T ss_pred hhhhCCEEEECCCCeeCcceEEEE-CCCChhhhcCCCCCEEEEECCCCcccccCCCCeEEEEEeCCCcEEEEEECCCCEE
Confidence 456899999999999998877743 23345777776 555422 1 3778999888999
Q ss_pred EEeecccccCChh---hHHHHHHHHHHhhCC
Q psy7151 72 GLQFHPEVDLTNE---GRTMLKNFLFDVCGL 99 (188)
Q Consensus 72 GVQFHPE~~~t~~---G~~il~nFl~~i~~~ 99 (188)
|||||||+.+|+. |.+||+||+..+|+-
T Consensus 681 GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~~ 711 (717)
T TIGR01815 681 AVQFHPESIMTLDGGAGLAMIGNVVDRLAAG 711 (717)
T ss_pred EEEeCCeeCCccCchhHHHHHHHHHHHHhhc
Confidence 9999999998864 799999999999853
No 24
>PRK00758 GMP synthase subunit A; Validated
Probab=99.22 E-value=1.7e-11 Score=99.60 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=55.4
Q ss_pred eecCCeEEecCcccCCcceeEEeeecccccccccc-----------------ccceecc-----cccccccccccEEEEe
Q psy7151 17 TLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-----------------EQGKVIE-----PLKDFHKDELRLYGLQ 74 (188)
Q Consensus 17 ~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-----------------~~s~vi~-----pi~Ai~~~~~~i~GVQ 74 (188)
.++|+.|.+.+.+.+|..... ......+|.++| .+..+++ +++|+++.+.++||+|
T Consensus 82 ~a~Gg~v~~~~~~~~g~~~i~--~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~~~~~~~~g~Q 159 (184)
T PRK00758 82 KAFGGEVGRGEYGEYALVEVE--ILDEDDILKGLPPEIRVWASHADEVKELPDGFEILARSDICEVEAMKHKEKPIYGVQ 159 (184)
T ss_pred HhcCcEEecCCCceeeeEEEE--EcCCChhhhCCCCCcEEEeehhhhhhhCCCCCEEEEECCCCCEEEEEECCCCEEEEE
Confidence 467899998888888865433 122334555554 3322222 3778888777899999
Q ss_pred ecccccCChhhHHHHHHHHHH
Q psy7151 75 FHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 75 FHPE~~~t~~G~~il~nFl~~ 95 (188)
||||+..++.|++||+||+..
T Consensus 160 fHPE~~~~~~g~~l~~~f~~~ 180 (184)
T PRK00758 160 FHPEVAHTEYGEEIFKNFLEI 180 (184)
T ss_pred cCCccCCCchHHHHHHHHHHH
Confidence 999999999999999999953
No 25
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.21 E-value=1.6e-11 Score=119.53 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=65.2
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc------ccceecc-------------------cccccccccccE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR------EQGKVIE-------------------PLKDFHKDELRL 70 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp------~~s~vi~-------------------pi~Ai~~~~~~i 70 (188)
+.++|+.|.+.+.+.||..+.| .|...++|.+++ +|++.+. .+||+++.++|+
T Consensus 100 a~a~GG~v~~~~~~~hG~~~~v--~~~~~~lf~gl~~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~~pi 177 (742)
T TIGR01823 100 CLAQGADISRLPTPKHGQVYEM--HTNDAAIFCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKPW 177 (742)
T ss_pred HhhcCCEEEECCCCCcCeEEEE--EECCccccCCCCCCceeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcCCce
Confidence 4679999999999999998888 566666777664 5554331 267899999999
Q ss_pred EEEeecccccCChhh-HHHHHHHHHHhh
Q psy7151 71 YGLQFHPEVDLTNEG-RTMLKNFLFDVC 97 (188)
Q Consensus 71 ~GVQFHPE~~~t~~G-~~il~nFl~~i~ 97 (188)
||||||||+.+|+.| ..||+||+....
T Consensus 178 ~GVQFHPE~~~s~~g~~~Lf~nFl~~~~ 205 (742)
T TIGR01823 178 FGVQYHPESCCSELGSGKLVSNFLKLAF 205 (742)
T ss_pred EEEEeCcccCCCCccHHHHHHHHHHHHH
Confidence 999999999999986 999999997644
No 26
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.21 E-value=1.9e-11 Score=99.16 Aligned_cols=76 Identities=32% Similarity=0.485 Sum_probs=57.8
Q ss_pred eeecCCeEEecCcccCCcceeEEeeeccccccccccc-------ccee------------c-----ccccccccccccEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE-------QGKV------------I-----EPLKDFHKDELRLY 71 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~-------~s~v------------i-----~pi~Ai~~~~~~i~ 71 (188)
+.++|+.+.+.+...||....+ ...+.++|+++|. |++. + ++++|+++.++++|
T Consensus 85 a~~~Gg~v~~~~~~~~g~~~~v--~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a~~~~~~~i~ 162 (184)
T cd01743 85 AEAFGGKVVRAPEPMHGKTSEI--HHDGSGLFKGLPQPFTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHRDLPIY 162 (184)
T ss_pred HHHhCCEEEeCCCCCcCceeEE--EECCCccccCCCCCcEEEeCcEEEEecCCCCceEEEEEeCCCCeEEEEEeCCCCEE
Confidence 3568999999988888876666 3345566666651 2211 1 14789998888999
Q ss_pred EEeecccccCChhhHHHHHHHH
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFL 93 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl 93 (188)
|+|||||+..++.|.+||+||+
T Consensus 163 gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 163 GVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred EEeeCCCcCCCcchHHHHHhhC
Confidence 9999999999999999999995
No 27
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.20 E-value=9.3e-12 Score=108.80 Aligned_cols=101 Identities=45% Similarity=0.762 Sum_probs=76.5
Q ss_pred CeeeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccceecccccccccccccEEEEeecccccCChhhHHHH
Q psy7151 10 QTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTML 89 (188)
Q Consensus 10 ~~~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il 89 (188)
.-+|+|||+|+|.||+. -|++..|+|||+-.+|-+.+. +..++|+.-+.
T Consensus 122 ~~~LaQGTiYpDvIES~----~g~~~~IKSHHNVGGLP~~m~--lkLvEPLr~Lf------------------------- 170 (315)
T COG0519 122 AEFLAQGTIYPDVIESG----TGKAGTIKSHHNVGGLPEDMK--LKLVEPLRELF------------------------- 170 (315)
T ss_pred cceEEecccccceeeec----CCCCCccccccccCCCccccc--eeeeHHHHHHh-------------------------
Confidence 66899999999999998 566789999888665444442 44555554322
Q ss_pred HHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCCchhhhhhhhh
Q psy7151 90 KNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSE 169 (188)
Q Consensus 90 ~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~~~~~~~~~~~ 169 (188)
|+.| +.+|...|++..++.|+|||||+||+|+++.=++.-.+...+
T Consensus 171 ---------------------------KDEV-------R~lg~~LGlp~~iv~RhPFPGPGLaiRilGevt~Ekl~ilR~ 216 (315)
T COG0519 171 ---------------------------KDEV-------RELGRELGLPEEIVYRHPFPGPGLAVRILGEVTREKLEILRE 216 (315)
T ss_pred ---------------------------HHHH-------HHHHHHhCCCHHHhccCCCCCCCeEEEeecccCHHHHHHHHH
Confidence 2223 667999999999999999999999999998777666666666
Q ss_pred hhhHHH
Q psy7151 170 TQVLVK 175 (188)
Q Consensus 170 ~~~~~~ 175 (188)
.+.|+.
T Consensus 217 Ad~I~~ 222 (315)
T COG0519 217 ADAIVE 222 (315)
T ss_pred HhHHHH
Confidence 666553
No 28
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.19 E-value=2e-11 Score=98.26 Aligned_cols=74 Identities=38% Similarity=0.614 Sum_probs=54.2
Q ss_pred ecCCeEEecCcccCCcceeEEeeecccccccccc-----------------ccceecc-----cccccccccccEEEEee
Q psy7151 18 LRPDLIESASHLASNKADVIKTHHNDSPLIRALR-----------------EQGKVIE-----PLKDFHKDELRLYGLQF 75 (188)
Q Consensus 18 ~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-----------------~~s~vi~-----pi~Ai~~~~~~i~GVQF 75 (188)
++|+.|.+.+.+.+|..... ......+|+++| .+..+++ +++|+++.+.++||+||
T Consensus 86 ~~gg~v~~~~~~~~G~~~v~--~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~~~~~~g~Qf 163 (181)
T cd01742 86 ALGGKVERGDKREYGKAEIE--IDDSSPLFEGLPDEQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEEKKIYGVQF 163 (181)
T ss_pred hcCCeEEeCCCCcceEEEEE--ecCCChhhcCCCCceEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEeCCCcEEEEEc
Confidence 67889988888888865542 223444566554 2222221 47789888779999999
Q ss_pred cccccCChhhHHHHHHHH
Q psy7151 76 HPEVDLTNEGRTMLKNFL 93 (188)
Q Consensus 76 HPE~~~t~~G~~il~nFl 93 (188)
|||+..++.|+.||+||+
T Consensus 164 HPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 164 HPEVTHTEKGKEILKNFL 181 (181)
T ss_pred CCccccCcChHHHHHhhC
Confidence 999999999999999995
No 29
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.16 E-value=1.3e-11 Score=107.99 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=51.0
Q ss_pred CcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEec--CCchhhhhhhhh
Q psy7151 102 NFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVIC--GEERYIEKDYSE 169 (188)
Q Consensus 102 ~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~--~~~~~~~~~~~~ 169 (188)
+|+|++|++++++.||++||+++|++ |+||||||+|+|.++++ .+|-++.| .|++.+|++|.+
T Consensus 1 ~w~~~~~ie~~i~~ir~~vg~~kvi~---alSGGVDSsv~a~L~~~--AiGd~l~cvfVD~GLlR~~E~e 65 (315)
T COG0519 1 MWTMENFIEEAIEEIREQVGDGKVIL---ALSGGVDSSVAAVLAHR--AIGDQLTCVFVDHGLLRKGEAE 65 (315)
T ss_pred CCCHHHHHHHHHHHHHHHhCCceEEE---EecCCCcHHHHHHHHHH--HhhcceEEEEecCCcccCCcHH
Confidence 69999999999999999999999999 99999999999977765 34444444 455666655554
No 30
>PRK13566 anthranilate synthase; Provisional
Probab=99.13 E-value=6.4e-11 Score=115.01 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=62.6
Q ss_pred eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c-----cccccccccccEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E-----PLKDFHKDELRLY 71 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~-----pi~Ai~~~~~~i~ 71 (188)
+.++|+.+.+.+.+.||+.+.|.. ..++.||+++| +|++.+ + +++|+++.+.++|
T Consensus 612 a~alGG~V~~~~~~~~G~~~~V~v-~~~~~Lf~~lp~~~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ai~~~~~pi~ 690 (720)
T PRK13566 612 VEAFGGELGQLAYPMHGKPSRIRV-RGPGRLFSGLPEEFTVGRYHSLFADPETLPDELLVTAETEDGVIMAIEHKTLPVA 690 (720)
T ss_pred HHHcCCEEEECCCCccCCceEEEE-CCCCchhhcCCCCCEEEEecceeEeeccCCCceEEEEEeCCCcEEEEEECCCCEE
Confidence 457899999999999999888854 23446777665 444322 1 3789999888999
Q ss_pred EEeecccccCC---hhhHHHHHHHHHHh
Q psy7151 72 GLQFHPEVDLT---NEGRTMLKNFLFDV 96 (188)
Q Consensus 72 GVQFHPE~~~t---~~G~~il~nFl~~i 96 (188)
|||||||+.+| +.|.+||+||+..+
T Consensus 691 GVQFHPE~i~t~~~~~G~~ii~nfl~~~ 718 (720)
T PRK13566 691 AVQFHPESIMTLGGDVGLRIIENVVRLL 718 (720)
T ss_pred EEeccCeeCCcCCchhHHHHHHHHHHHh
Confidence 99999999988 56999999999764
No 31
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.13 E-value=3.7e-11 Score=100.34 Aligned_cols=81 Identities=28% Similarity=0.484 Sum_probs=61.7
Q ss_pred eecCCeEEecCcccCCcce-------------------eEEeeeccccccccccccceecc-----cccccccccccEEE
Q psy7151 17 TLRPDLIESASHLASNKAD-------------------VIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYG 72 (188)
Q Consensus 17 ~~~g~~I~~~~~~~HGk~~-------------------~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~G 72 (188)
.++|+.|++++....|.+. .|+.+|.|. |..+|+++.+++ |+.|+.+. +++||
T Consensus 94 ~~lGg~V~~~~~~E~G~~~v~~~~~~~~l~~gl~~~~~~v~~sH~D~--v~~lP~g~~vlA~s~~cp~qa~~~~-~~~~g 170 (198)
T COG0518 94 KALGGKVERGPKREIGWTPVELTEGDDPLFAGLPDLFTTVFMSHGDT--VVELPEGAVVLASSETCPNQAFRYG-KRAYG 170 (198)
T ss_pred HHhCCEEeccCCCccceEEEEEecCccccccCCccccCccccchhCc--cccCCCCCEEEecCCCChhhheecC-CcEEE
Confidence 4677788777654455332 244445555 666777776654 68899988 89999
Q ss_pred EeecccccCChhhHHHHHHHHHHhhCCCC
Q psy7151 73 LQFHPEVDLTNEGRTMLKNFLFDVCGLTG 101 (188)
Q Consensus 73 VQFHPE~~~t~~G~~il~nFl~~i~~~~~ 101 (188)
+|||||+.+ +.|+++++||...+|++++
T Consensus 171 vQFHpEv~~-~~~~~~l~nf~~~i~~~~~ 198 (198)
T COG0518 171 VQFHPEVTH-EYGEALLENFAHEICGEEP 198 (198)
T ss_pred EeeeeEEeH-HHHHHHHHHhhhhhcccCC
Confidence 999999999 9999999999999998763
No 32
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.06 E-value=8.1e-11 Score=101.18 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=51.5
Q ss_pred eeEEeeeccccccccccccceecc-----ccccccccccc-EEEEeecccccCChhh--HHHHHHHHHHhh
Q psy7151 35 DVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELR-LYGLQFHPEVDLTNEG--RTMLKNFLFDVC 97 (188)
Q Consensus 35 ~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~-i~GVQFHPE~~~t~~G--~~il~nFl~~i~ 97 (188)
..|||+|++. ++.+|+++.+++ .++|+++.+.+ ++|||||||+..++++ +.||+||+....
T Consensus 177 ~~Vns~H~q~--V~~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~ 245 (254)
T PRK11366 177 FWVNSLHGQG--AKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQ 245 (254)
T ss_pred EEeehHHHHH--HhhcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHH
Confidence 3588889988 889998888765 48999998776 4999999999998888 899999997553
No 33
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.03 E-value=1.3e-10 Score=95.31 Aligned_cols=67 Identities=15% Similarity=0.267 Sum_probs=56.1
Q ss_pred eecCCeEEecCcccCCcceeEEeeeccccccccccccceecc-----ccccccccc-ccEEEEeecccccCC--hhhHHH
Q psy7151 17 TLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDE-LRLYGLQFHPEVDLT--NEGRTM 88 (188)
Q Consensus 17 ~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~-~~i~GVQFHPE~~~t--~~G~~i 88 (188)
.++|+.|.+.+ .++++|++. +..+|++..+.+ +++|+++.+ .++||+|||||+..+ +.|++|
T Consensus 115 ~~~Gg~v~~~~--------~v~~~H~~~--v~~~~~~~~vla~~~d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~i 184 (189)
T cd01745 115 VALGGTLYQDI--------RVNSLHHQA--IKRLADGLRVEARAPDGVIEAIESPDRPFVLGVQWHPEWLADTDPDSLKL 184 (189)
T ss_pred HHhCCeEEcCC--------ceechHHHH--HhhcCCCCEEEEECCCCcEEEEEeCCCCeEEEEecCCCcCcccCchHhHH
Confidence 46788887665 788889888 788887766654 588999987 799999999999998 899999
Q ss_pred HHHHH
Q psy7151 89 LKNFL 93 (188)
Q Consensus 89 l~nFl 93 (188)
|+||+
T Consensus 185 f~~f~ 189 (189)
T cd01745 185 FEAFV 189 (189)
T ss_pred HHHhC
Confidence 99994
No 34
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.01 E-value=3.3e-10 Score=93.02 Aligned_cols=72 Identities=24% Similarity=0.346 Sum_probs=51.3
Q ss_pred cCCeEEecCc------ccCCcceeEEeeecccccccccc-------ccceeccc--------------ccccccccccEE
Q psy7151 19 RPDLIESASH------LASNKADVIKTHHNDSPLIRALR-------EQGKVIEP--------------LKDFHKDELRLY 71 (188)
Q Consensus 19 ~g~~I~~~~~------~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~p--------------i~Ai~~~~~~i~ 71 (188)
|++.+.+.++ +.+|..... .+.++.||+++| +|++.+.+ .++..+..+++|
T Consensus 100 ~~g~v~~~~~~~~~~~~~~G~~~v~--~~~~~~lf~~l~~~~~v~~~Hs~~v~~~~~~~~la~s~~~~~~~~~~~~~~i~ 177 (198)
T cd01748 100 IPGKVVRFPASEGLKVPHMGWNQLE--ITKESPLFKGIPDGSYFYFVHSYYAPPDDPDYILATTDYGGKFPAAVEKDNIF 177 (198)
T ss_pred cceEEEECCCCCCceEEEeccceEE--ECCCChhhhCCCCCCeEEEEeEEEEecCCcceEEEEecCCCeEEEEEEcCCEE
Confidence 7889988775 477887654 355667888876 44444321 112223456899
Q ss_pred EEeecccccCChhhHHHHHHHH
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFL 93 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl 93 (188)
|+|||||+. ++.|++||+||+
T Consensus 178 GvQFHPE~~-~~~g~~~~~nf~ 198 (198)
T cd01748 178 GTQFHPEKS-GKAGLKLLKNFL 198 (198)
T ss_pred EEECCCccc-cHhHHHHHHhhC
Confidence 999999998 679999999995
No 35
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.00 E-value=3.1e-10 Score=92.11 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=55.9
Q ss_pred eeecCCeEEecCcccCCcceeE-----------Eeeeccccccc--cccccceecc------cccccccccccEEEEeec
Q psy7151 16 GTLRPDLIESASHLASNKADVI-----------KTHHNDSPLIR--ALREQGKVIE------PLKDFHKDELRLYGLQFH 76 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V-----------~s~H~~~~Lf~--~lp~~s~vi~------pi~Ai~~~~~~i~GVQFH 76 (188)
+.+||+.+.+.+...||+.+.+ +++|++. ++ .+|.++.+++ .++|+++.+.++||+|||
T Consensus 83 ~~~~Gg~v~~~~~~~~g~~~~v~~~~~~~~~~v~~~H~~~--v~~~~lp~~~~v~a~s~~~~~i~a~~~~~~~i~GvQfH 160 (178)
T cd01744 83 ALALGAKTYKMKFGHRGSNHPVKDLITGRVYITSQNHGYA--VDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSVQFH 160 (178)
T ss_pred HHHcCCceecCCCCCCCCceeeEEcCCCCcEEEEcCceEE--EcccccCCceEEEEEECCCCcEEEEEECCCCeEEEeeC
Confidence 4578898888776667765443 3346655 43 5777665543 278999988899999999
Q ss_pred ccccCCh-hhHHHHHHHH
Q psy7151 77 PEVDLTN-EGRTMLKNFL 93 (188)
Q Consensus 77 PE~~~t~-~G~~il~nFl 93 (188)
||+..++ ....||++|+
T Consensus 161 PE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 161 PEASPGPHDTEYLFDEFL 178 (178)
T ss_pred CCCCCCCCCchHhHhhhC
Confidence 9998875 5678999995
No 36
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=98.97 E-value=7.2e-10 Score=93.06 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=28.4
Q ss_pred ccccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151 60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
++|++. .++||+|||||++ ++.|.+||+||+.+
T Consensus 177 v~a~~~--~~i~GvQFHPE~s-~~~G~~il~nfl~~ 209 (210)
T CHL00188 177 VAAIEY--DNIFAMQFHPEKS-GEFGLWLLREFMKK 209 (210)
T ss_pred EEEEec--CCEEEEecCCccc-cHhHHHHHHHHHhh
Confidence 456664 5999999999999 99999999999964
No 37
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=98.86 E-value=2.4e-09 Score=96.72 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=57.9
Q ss_pred eeecCCeEEecCcccCCcceeEE----------e-eeccccccc--cccccceecc------cccccccccccEEEEeec
Q psy7151 16 GTLRPDLIESASHLASNKADVIK----------T-HHNDSPLIR--ALREQGKVIE------PLKDFHKDELRLYGLQFH 76 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~----------s-~H~~~~Lf~--~lp~~s~vi~------pi~Ai~~~~~~i~GVQFH 76 (188)
+.++|+.+.+++...||..+.++ + +|+.. ++ .+|.++.+.+ .++|+++.++|+||||||
T Consensus 262 a~a~Gg~v~kl~~gh~G~~~pv~~~~~~~~~its~~H~~~--V~~~~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQfH 339 (360)
T PRK12564 262 ALALGAKTYKMKFGHRGANHPVKDLETGKVEITSQNHGFA--VDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYH 339 (360)
T ss_pred HHHhCCcEeccCCCccCCceeeEECCCCcEEEEecCcccE--EcccccCCceEEEEEeCCCCcEEEEEECCCCEEEEEeC
Confidence 46789999988877777655442 2 35544 43 5666554432 378999999999999999
Q ss_pred ccccCChh-hHHHHHHHHHH
Q psy7151 77 PEVDLTNE-GRTMLKNFLFD 95 (188)
Q Consensus 77 PE~~~t~~-G~~il~nFl~~ 95 (188)
||+..++. +..||++|+..
T Consensus 340 PE~~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 340 PEASPGPHDSAYLFDEFVEL 359 (360)
T ss_pred CcCCCCCCCHHHHHHHHHHh
Confidence 99988765 88999999964
No 38
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=98.85 E-value=2.1e-09 Score=87.00 Aligned_cols=79 Identities=24% Similarity=0.425 Sum_probs=52.8
Q ss_pred eeecCCeEEecC-cccCCcceeEEeeeccccccccc--------------------cccceecc------cccccccccc
Q psy7151 16 GTLRPDLIESAS-HLASNKADVIKTHHNDSPLIRAL--------------------REQGKVIE------PLKDFHKDEL 68 (188)
Q Consensus 16 g~~~g~~I~~~~-~~~HGk~~~V~s~H~~~~Lf~~l--------------------p~~s~vi~------pi~Ai~~~~~ 68 (188)
+.++|+.|.+.+ .+.+|....+... ....+|.++ |.++.+++ +++|+.+.+.
T Consensus 86 a~~~G~~v~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~ 164 (192)
T PF00117_consen 86 AHALGGKVVPSPEKPHHGGNIPISET-PEDPLFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDN 164 (192)
T ss_dssp HHHTTHEEEEEESEEEEEEEEEEEEE-EEHGGGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTT
T ss_pred HHhcCCcccccccccccccccccccc-cccccccccccccccccccceeeeccccccccccccccccccccccccccccc
Confidence 346777777776 5666655555221 112334444 43333321 3667888777
Q ss_pred cEEEEeecccccCChhhHHHHHHHHHH
Q psy7151 69 RLYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 69 ~i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
++||+|||||...+..|..+|+||+.+
T Consensus 165 ~i~g~QfHPE~~~~~~~~~~l~nf~~~ 191 (192)
T PF00117_consen 165 PIYGVQFHPEFSSSPGGPQLLKNFFLK 191 (192)
T ss_dssp SEEEESSBTTSTTSTTHHHHHHHHHHH
T ss_pred EEEEEecCCcCCCCCCcchhhhheeEe
Confidence 899999999999999999999999854
No 39
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.83 E-value=4.1e-09 Score=86.81 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=46.9
Q ss_pred cCCeEEecCc-----ccCCcceeEEeeecccccccccc-------ccceeccc--------------ccccccccccEEE
Q psy7151 19 RPDLIESASH-----LASNKADVIKTHHNDSPLIRALR-------EQGKVIEP--------------LKDFHKDELRLYG 72 (188)
Q Consensus 19 ~g~~I~~~~~-----~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~p--------------i~Ai~~~~~~i~G 72 (188)
+|+.+.+.+. +.+|..... .+.++.||+++| +|++.+.+ ..+.....+++||
T Consensus 100 l~~~v~~~~~~~~~~~~~G~~~v~--~~~~~~lf~~l~~~~~~~~~Hs~~v~~~~~~~~lA~s~~~~~~~~~~~~~~i~G 177 (199)
T PRK13181 100 IPGDVKRFRSEPLKVPQMGWNSVK--PLKESPLFKGIEEGSYFYFVHSYYVPCEDPEDVLATTEYGVPFCSAVAKDNIYA 177 (199)
T ss_pred EEEEEEEcCCCCCCCCccCccccc--cCCCChhHcCCCCCCEEEEeCeeEeccCCcccEEEEEcCCCEEEEEEECCCEEE
Confidence 6677887653 466765443 234566787776 33333211 1111122468999
Q ss_pred EeecccccCChhhHHHHHHHHH
Q psy7151 73 LQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 73 VQFHPE~~~t~~G~~il~nFl~ 94 (188)
+|||||+. ++.|+.||+||+.
T Consensus 178 vQFHPE~~-~~~g~~ll~nfl~ 198 (199)
T PRK13181 178 VQFHPEKS-GKAGLKLLKNFAE 198 (199)
T ss_pred EECCCccC-CHHHHHHHHHHHh
Confidence 99999988 6899999999985
No 40
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=98.80 E-value=2.9e-09 Score=91.44 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=54.5
Q ss_pred cCCcc-eeEEeeeccccccccccccceecc-----ccccccccc-ccEEEEeecccccCCh--hhHHHHHHHHHHh
Q psy7151 30 ASNKA-DVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDE-LRLYGLQFHPEVDLTN--EGRTMLKNFLFDV 96 (188)
Q Consensus 30 ~HGk~-~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~-~~i~GVQFHPE~~~t~--~G~~il~nFl~~i 96 (188)
..|+. ..|||+|+|+ ++.|++++.+.+ -++|++++. .++.|||||||..... .-++||+.|....
T Consensus 165 i~g~~~~~VNS~HhQa--Ik~La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~ 238 (243)
T COG2071 165 ILGESEFMVNSFHHQA--IKKLAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNAC 238 (243)
T ss_pred hcCccceeecchHHHH--HHHhCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHH
Confidence 35655 7999999999 999999998876 389999985 6899999999998654 4599999998754
No 41
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.80 E-value=7.8e-09 Score=86.84 Aligned_cols=29 Identities=34% Similarity=0.655 Sum_probs=26.0
Q ss_pred ccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151 66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 66 ~~~~i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
.+.++||+|||||+.+ ++|.+||+||+..
T Consensus 181 ~~~~i~GvQFHPE~s~-~~G~~iL~nfl~~ 209 (210)
T PRK14004 181 EKENIFGTQFHPEKSH-THGLKLLENFIEF 209 (210)
T ss_pred ecCCEEEEeCCcccCc-hhHHHHHHHHHhh
Confidence 3578999999999999 6999999999964
No 42
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=98.79 E-value=7.8e-09 Score=93.25 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=56.2
Q ss_pred eeecCCeEEecCcccCCcceeEEe-----------eeccccccc--ccccc-ceecc------cccccccccccEEEEee
Q psy7151 16 GTLRPDLIESASHLASNKADVIKT-----------HHNDSPLIR--ALREQ-GKVIE------PLKDFHKDELRLYGLQF 75 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s-----------~H~~~~Lf~--~lp~~-s~vi~------pi~Ai~~~~~~i~GVQF 75 (188)
+.++|+.+.+++...||..+.|+. +|+.. ++ .++.. ..+.+ .++|+++.++|+|||||
T Consensus 251 a~a~Gg~v~kl~~gh~G~~hpV~~~~~~~~~~ts~~H~~a--V~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQf 328 (354)
T PRK12838 251 ALALGADTEKLPFGHRGANHPVIDLTTGRVWMTSQNHGYV--VDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQF 328 (354)
T ss_pred HHHhCCEEecCCCCccCCceEEEECCCCeEEEeccchheE--ecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEe
Confidence 458899999988778888776632 23332 21 13322 22221 27899999999999999
Q ss_pred cccccCCh-hhHHHHHHHHHHh
Q psy7151 76 HPEVDLTN-EGRTMLKNFLFDV 96 (188)
Q Consensus 76 HPE~~~t~-~G~~il~nFl~~i 96 (188)
|||+..++ ++..||++|++.+
T Consensus 329 HPE~~~gp~d~~~lF~~F~~~~ 350 (354)
T PRK12838 329 HPEAHPGPHDAEYIFDEFLEMM 350 (354)
T ss_pred CCCCCCCCccHHHHHHHHHHHH
Confidence 99998765 5889999999765
No 43
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=98.79 E-value=8.4e-09 Score=85.08 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=47.0
Q ss_pred cCCeEEecC---cccCCcceeEEeeecccccccccc-------ccceeccc-------------ccccccccccEEEEee
Q psy7151 19 RPDLIESAS---HLASNKADVIKTHHNDSPLIRALR-------EQGKVIEP-------------LKDFHKDELRLYGLQF 75 (188)
Q Consensus 19 ~g~~I~~~~---~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~p-------------i~Ai~~~~~~i~GVQF 75 (188)
+|+.+.+.+ .+.+|..... .+.+++||+++| +|++.+.+ ..+.....+++||+||
T Consensus 100 ~~~~v~~~~~~~~~~~g~~~~~--~~~~~~l~~~l~~~~~v~~~Hs~~v~~~~~~~~a~~~~g~~~~~~~~~~~i~GvQF 177 (196)
T TIGR01855 100 IKGNVVKLEARKVPHMGWNEVH--PVKESPLLNGIDEGAYFYFVHSYYAVCEEEAVLAYADYGEKFPAAVQKGNIFGTQF 177 (196)
T ss_pred eeEEEEECCCCCCCcccCeeee--eCCCChHHhCCCCCCEEEEECeeEecCCCCcEEEEEcCCcEEEEEEecCCEEEEEC
Confidence 678888775 3355544332 244556777766 44443321 1112334468999999
Q ss_pred cccccCChhhHHHHHHHHH
Q psy7151 76 HPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 76 HPE~~~t~~G~~il~nFl~ 94 (188)
|||+. ++.|.+|++||++
T Consensus 178 HPE~~-~~~g~~ll~~f~~ 195 (196)
T TIGR01855 178 HPEKS-GKTGLKLLENFLE 195 (196)
T ss_pred CCccC-cHhHHHHHHHHHh
Confidence 99988 5899999999985
No 44
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.78 E-value=8.1e-09 Score=86.22 Aligned_cols=28 Identities=39% Similarity=0.652 Sum_probs=25.3
Q ss_pred cccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151 67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
..++||||||||++ ++.|.+||+||+..
T Consensus 180 ~~~i~GvQFHPE~s-~~~G~~ll~nfl~~ 207 (209)
T PRK13146 180 RDNLFATQFHPEKS-QDAGLALLRNFLAW 207 (209)
T ss_pred cCCEEEEEcCCccc-HHHHHHHHHHHHhh
Confidence 46899999999998 78999999999864
No 45
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.77 E-value=1.2e-08 Score=84.42 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=49.4
Q ss_pred cCCeEEecC-----cccCCcceeEEeeecccccccccc-------ccceecc----------c-----ccccccccccEE
Q psy7151 19 RPDLIESAS-----HLASNKADVIKTHHNDSPLIRALR-------EQGKVIE----------P-----LKDFHKDELRLY 71 (188)
Q Consensus 19 ~g~~I~~~~-----~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~----------p-----i~Ai~~~~~~i~ 71 (188)
+++.+.+.+ .+.|+....|+. ..++.||+++| +||+.+. + +++++ ..++|
T Consensus 102 ~~g~v~~~~~~~~~~~~~~g~~~v~~-~~~~~l~~~l~~~~~~~~vHS~~v~~~~~~v~a~~~~g~~~~~a~~--~~~i~ 178 (201)
T PRK13152 102 IEGEVVKFEEDLNLKIPHMGWNELEI-LKQSPLYQGIPEKSDFYFVHSFYVKCKDEFVSAKAQYGHKFVASLQ--KDNIF 178 (201)
T ss_pred ccEEEEECCCCCCCcCCccCeEEEEE-CCCChhhhCCCCCCeEEEEcccEeecCCCcEEEEECCCCEEEEEEe--cCCEE
Confidence 457777654 245887888853 45667888876 3343331 1 22444 46899
Q ss_pred EEeecccccCChhhHHHHHHHHH
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl~ 94 (188)
|+|||||++ ++.|.+||+||++
T Consensus 179 GvQFHPE~~-~~~g~~ll~~Fl~ 200 (201)
T PRK13152 179 ATQFHPEKS-QNLGLKLLENFAR 200 (201)
T ss_pred EEeCCCeec-ChhhHHHHHHHHh
Confidence 999999998 5699999999985
No 46
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.72 E-value=2e-08 Score=82.95 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=47.9
Q ss_pred cCCeEEecCc-----ccCCcceeEEeeecccccccccc-------ccceecc---------------cccccccccccEE
Q psy7151 19 RPDLIESASH-----LASNKADVIKTHHNDSPLIRALR-------EQGKVIE---------------PLKDFHKDELRLY 71 (188)
Q Consensus 19 ~g~~I~~~~~-----~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~---------------pi~Ai~~~~~~i~ 71 (188)
+++.+.+.+. +.|.....+.. +.++.||+.+| +|++.+. +++++.. ..++|
T Consensus 101 l~g~v~~~~~~~~~~~~~~g~~~i~~-~~~~~l~~~l~~~~~v~~~Hs~~v~~~~~~~v~a~~~~~~~~~a~~~-~~~i~ 178 (205)
T PRK13141 101 LPGRVRRFPPEEGLKVPHMGWNQLEL-KKESPLLKGIPDGAYVYFVHSYYADPCDEEYVAATTDYGVEFPAAVG-KDNVF 178 (205)
T ss_pred EEEEEEEcCCCCCCcccEecCcccee-CCCChhhhCCCCCCEEEEECeeEeccCCcCeEEEEEeCCcEEEEEEe-cCCEE
Confidence 6778887752 23433334432 34666787776 3333321 2445543 46899
Q ss_pred EEeecccccCChhhHHHHHHHHHH
Q psy7151 72 GLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 72 GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
|||||||+.. +.|++||+||+..
T Consensus 179 GvQfHPE~~~-~~g~~l~~~fl~~ 201 (205)
T PRK13141 179 GAQFHPEKSG-DVGLKILKNFVEM 201 (205)
T ss_pred EEeCCCccch-HHHHHHHHHHHHH
Confidence 9999999975 7999999999864
No 47
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=98.70 E-value=1.9e-08 Score=90.87 Aligned_cols=79 Identities=13% Similarity=0.214 Sum_probs=56.1
Q ss_pred eeecCCeEEecCcccCCcceeEE----------e-eeccccccc--ccc-ccceecc------cccccccccccEEEEee
Q psy7151 16 GTLRPDLIESASHLASNKADVIK----------T-HHNDSPLIR--ALR-EQGKVIE------PLKDFHKDELRLYGLQF 75 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~----------s-~H~~~~Lf~--~lp-~~s~vi~------pi~Ai~~~~~~i~GVQF 75 (188)
+.+||+.+.+++...||..+.|+ + +|+.. ++ .+| .++.+.+ .++|++|+++|+|||||
T Consensus 257 a~a~Gg~v~kl~~gh~G~nhpV~~~~~~~v~itsqnH~~a--V~~~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQf 334 (358)
T TIGR01368 257 ALAFGAKTYKMKFGHRGGNHPVKDLITGRVEITSQNHGYA--VDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQY 334 (358)
T ss_pred HHHhCCceeccCcCcCCCceeeEECCCCcEEEeecCCCcE--EcccccCCCceEEEEEECCCCcEEEEEECCCCEEEEEE
Confidence 46789988888777777665542 1 25444 32 344 3344432 28899999999999999
Q ss_pred cccccCChh-hHHHHHHHHHHh
Q psy7151 76 HPEVDLTNE-GRTMLKNFLFDV 96 (188)
Q Consensus 76 HPE~~~t~~-G~~il~nFl~~i 96 (188)
|||+...+. ...||++|+..+
T Consensus 335 HPE~~~gp~d~~~lF~~F~~~~ 356 (358)
T TIGR01368 335 HPEASPGPHDTEYLFDEFIDLI 356 (358)
T ss_pred CCCCCCCCCChHHHHHHHHHHh
Confidence 999987764 577999999654
No 48
>PRK00768 nadE NAD synthetase; Reviewed
Probab=98.61 E-value=2.1e-08 Score=87.43 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh---cCCC-CC---------ceE
Q psy7151 86 RTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR---HPFP-GP---------GLA 152 (188)
Q Consensus 86 ~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~---~~~p-~~---------~L~ 152 (188)
++|++.| +..++++++..++.++.|||+++...+..+.++|+|||+||+|+|. .+++ .+ .++
T Consensus 4 ~~~~~~~-----~~~~~~~~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~ 78 (268)
T PRK00768 4 QEIIAEL-----GVKPTIDPEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIA 78 (268)
T ss_pred HHHHHHH-----CCCCCCCHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEE
Confidence 4555555 4566789999999999999999998888888889999999999994 4443 33 799
Q ss_pred EEEecCC
Q psy7151 153 IRVICGE 159 (188)
Q Consensus 153 v~~~~~~ 159 (188)
+.||..+
T Consensus 79 l~mP~~~ 85 (268)
T PRK00768 79 VRLPYGV 85 (268)
T ss_pred EECCCCC
Confidence 9999643
No 49
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.60 E-value=6.8e-08 Score=79.86 Aligned_cols=27 Identities=44% Similarity=0.789 Sum_probs=24.3
Q ss_pred cccEEEEeecccccCChhhHHHHHHHHH
Q psy7151 67 ELRLYGLQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~ 94 (188)
..++||+|||||+. ++.|.+||+||++
T Consensus 169 ~~~i~G~QFHPE~~-~~~G~~~l~nfl~ 195 (196)
T PRK13170 169 KDNFFGVQFHPERS-GAAGAQLLKNFLE 195 (196)
T ss_pred cCCEEEEECCCCCc-ccccHHHHHHHhh
Confidence 46899999999999 5899999999984
No 50
>PTZ00323 NAD+ synthase; Provisional
Probab=98.57 E-value=5e-08 Score=86.07 Aligned_cols=64 Identities=9% Similarity=0.004 Sum_probs=47.8
Q ss_pred CCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhc---CC-C-----CCceEEEEecCCch
Q psy7151 98 GLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRH---PF-P-----GPGLAIRVICGEER 161 (188)
Q Consensus 98 ~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~---~~-p-----~~~L~v~~~~~~~~ 161 (188)
+..++|+++++++..+.+||+++...+.-+.++|+||||||+|+|.. ++ + ...+|+.+|..+++
T Consensus 19 ~~~~~~~~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~ 91 (294)
T PTZ00323 19 RRKRAFNPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSA 91 (294)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCH
Confidence 56899999999999999999987653333344499999999999932 22 2 23778888865443
No 51
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=98.54 E-value=2.2e-08 Score=85.74 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh----hcCCCCCceEEEEec
Q psy7151 108 REEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM----RHPFPGPGLAIRVIC 157 (188)
Q Consensus 108 ~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva----~~~~p~~~L~v~~~~ 157 (188)
+++.++.|||+++.+.+..+.++|+||||||+|+| ++..|++.+|+.||.
T Consensus 1 ~~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~ 54 (242)
T PF02540_consen 1 VIEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPS 54 (242)
T ss_dssp -HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEES
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhcccccccccc
Confidence 47889999999988554444445999999999999 334478999999994
No 52
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=98.48 E-value=9e-08 Score=83.55 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=53.4
Q ss_pred cccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh----cCC----CCCceEEEEecCC-chhhhhhhhhhh
Q psy7151 103 FTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR----HPF----PGPGLAIRVICGE-ERYIEKDYSETQ 171 (188)
Q Consensus 103 W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~----~~~----p~~~L~v~~~~~~-~~~~~~~~~~~~ 171 (188)
-+.++.++.++.|||+++.+.+..+.|+|+|||+||++++. +.. +.+.++++||... ...+.+|-.++.
T Consensus 3 ~d~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~ 80 (268)
T COG0171 3 IDLEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLA 80 (268)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHH
Confidence 45778899999999999998877777789999999999982 332 3569999999775 555555554433
No 53
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.46 E-value=3.1e-07 Score=76.00 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=24.5
Q ss_pred cccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151 67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
..++||+|||||+. ++.|.+||+||+..
T Consensus 170 ~~~~~gvQfHPE~~-~~~g~~i~~~f~~~ 197 (200)
T PRK13143 170 NDNVFGTQFHPEKS-GETGLKILENFVEL 197 (200)
T ss_pred cCCEEEEeCCCccc-hHHHHHHHHHHHHH
Confidence 35999999999997 57999999999864
No 54
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=98.45 E-value=1.8e-07 Score=85.29 Aligned_cols=37 Identities=14% Similarity=0.331 Sum_probs=32.5
Q ss_pred ccccccccccEEEEeecccccCChhh-HHHHHHHHHHh
Q psy7151 60 LKDFHKDELRLYGLQFHPEVDLTNEG-RTMLKNFLFDV 96 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~~t~~G-~~il~nFl~~i 96 (188)
++|++|.++|+||||||||+..++.+ ..||++|+..+
T Consensus 337 vegi~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv~~~ 374 (382)
T CHL00197 337 VAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEII 374 (382)
T ss_pred EEEEEECCCCcEEEeeCCCCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987775 56999999754
No 55
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=98.42 E-value=4.1e-07 Score=76.46 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=47.7
Q ss_pred ecCCeEEecCcc----cCCcceeEEeeeccccccccccc-------cceeccc----------------ccccccccccE
Q psy7151 18 LRPDLIESASHL----ASNKADVIKTHHNDSPLIRALRE-------QGKVIEP----------------LKDFHKDELRL 70 (188)
Q Consensus 18 ~~g~~I~~~~~~----~HGk~~~V~s~H~~~~Lf~~lp~-------~s~vi~p----------------i~Ai~~~~~~i 70 (188)
.+++.++|.+.. -|=--.++... .++.||+++++ ||+.+.| .+|+.+ .++
T Consensus 102 ~i~G~V~r~~~~~~kvPHMGWN~l~~~-~~~~l~~gi~~~~~~YFVHSY~~~~~~~~~v~~~~~YG~~f~AaV~k--~N~ 178 (204)
T COG0118 102 LIPGKVVRFPAEDLKVPHMGWNQVEFV-RGHPLFKGIPDGAYFYFVHSYYVPPGNPETVVATTDYGEPFPAAVAK--DNV 178 (204)
T ss_pred eecceEEEcCCCCCCCCccccceeecc-CCChhhcCCCCCCEEEEEEEEeecCCCCceEEEeccCCCeeEEEEEe--CCE
Confidence 355666666532 23222333222 46789999986 3444331 234543 499
Q ss_pred EEEeecccccCChhhHHHHHHHHHHh
Q psy7151 71 YGLQFHPEVDLTNEGRTMLKNFLFDV 96 (188)
Q Consensus 71 ~GVQFHPE~~~t~~G~~il~nFl~~i 96 (188)
+|+|||||++. ..|.+||+||+..+
T Consensus 179 ~g~QFHPEKSg-~~Gl~lL~NFl~~~ 203 (204)
T COG0118 179 FGTQFHPEKSG-KAGLKLLKNFLEWI 203 (204)
T ss_pred EEEecCcccch-HHHHHHHHHHHhhc
Confidence 99999999974 68999999999653
No 56
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.39 E-value=1.9e-07 Score=78.96 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=33.6
Q ss_pred ccccccccccEEEEeeccccc-----CChhhHHHHHHHHHH
Q psy7151 60 LKDFHKDELRLYGLQFHPEVD-----LTNEGRTMLKNFLFD 95 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~-----~t~~G~~il~nFl~~ 95 (188)
++++.+.+.+++|+|||||+. +|++|+.||+||+..
T Consensus 186 i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~ 226 (227)
T TIGR01737 186 IAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLVEW 226 (227)
T ss_pred HcccCCCCCCEEEEecCchhhcccccCCcccHHHHHHHHhh
Confidence 789999999999999999999 799999999999864
No 57
>PRK00919 GMP synthase subunit B; Validated
Probab=98.27 E-value=5e-07 Score=80.19 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=38.2
Q ss_pred cccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCC
Q psy7151 103 FTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFP 147 (188)
Q Consensus 103 W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p 147 (188)
++|++|+++.++.||++++++++++ |+|||+||++++..+..
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~kVlV---a~SGGVDSsvla~la~~ 43 (307)
T PRK00919 2 VDPEKFIEEAIEEIREEIGDGKAII---ALSGGVDSSVAAVLAHR 43 (307)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEE---EecCCHHHHHHHHHHHH
Confidence 5799999999999999999999999 99999999999965543
No 58
>PLN02347 GMP synthetase
Probab=98.25 E-value=6.6e-07 Score=84.73 Aligned_cols=93 Identities=49% Similarity=0.760 Sum_probs=65.6
Q ss_pred CCCCCeeeEeeeecCCeEEecCcccC--CcceeEEeeeccccccccccccceecccccccccccccEEEEeecccccCCh
Q psy7151 6 LDPNQTLLCQGTLRPDLIESASHLAS--NKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTN 83 (188)
Q Consensus 6 ~~~~~~~~~~g~~~g~~I~~~~~~~H--Gk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~~~t~ 83 (188)
++.+..+++|||.|+|.+++...|-. +.++.|+|||+..+|-+..- +.++.|+.-+.+.+
T Consensus 332 ~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~hhn~~~l~~~~~--~~ii~PL~~l~K~e---------------- 393 (536)
T PLN02347 332 LGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMK--LKLIEPLKLLFKDE---------------- 393 (536)
T ss_pred hCCCCcEEccCCcccccccccCCCCCccccccceeeecccccChHHHH--CccccchhhCcHHH----------------
Confidence 34455799999999999997655533 34889999887654433322 34566665433211
Q ss_pred hhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCC
Q psy7151 84 EGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159 (188)
Q Consensus 84 ~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~ 159 (188)
+ +.+|...|++..++.++|||+|+|++|+.|..
T Consensus 394 --------------------------------V-----------R~la~~lgl~~~~~~~~p~p~p~La~Ri~g~~ 426 (536)
T PLN02347 394 --------------------------------V-----------RKLGRLLGVPEAFLKRHPFPGPGLAVRVLGDV 426 (536)
T ss_pred --------------------------------H-----------HHHHHHcCCCHHHhcCCCcCCCCEEeeeCCcc
Confidence 1 44466778999999999999999999997654
No 59
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=98.25 E-value=5.9e-07 Score=75.51 Aligned_cols=44 Identities=23% Similarity=0.463 Sum_probs=35.8
Q ss_pred cceeEEeeeccccccccccccceecc-----cccccccccc--cEEEEeeccc
Q psy7151 33 KADVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDEL--RLYGLQFHPE 78 (188)
Q Consensus 33 k~~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~--~i~GVQFHPE 78 (188)
....|||+|+++ ++.++.++.+++ -++|++..+. +++|||||||
T Consensus 167 ~~~~vns~Hhq~--v~~l~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 167 EEIEVNSFHHQA--VKPLGEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp CTEEEEEEECEE--ECCHHCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred Ccceeecchhhh--hhccCCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence 456899999999 999999988876 2788888873 6999999999
No 60
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.23 E-value=1e-06 Score=71.37 Aligned_cols=47 Identities=36% Similarity=0.641 Sum_probs=32.6
Q ss_pred EEeeeccccccccccccceecc-----cccccccccccEEEEeecccccCChhhHHHHHHHH
Q psy7151 37 IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93 (188)
Q Consensus 37 V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl 93 (188)
++.+|++. +..+|.+..+++ +++|+... .++||+||||| .+|++||+
T Consensus 137 v~~~H~~~--v~~lp~~~~~la~~~~~~v~~~~~~-~~~~g~QfHPE-------~~~~~~f~ 188 (188)
T cd01741 137 VFHWHGDT--VVELPPGAVLLASSEACPNQAFRYG-DRALGLQFHPE-------ERLLRNFL 188 (188)
T ss_pred EEEEeccC--hhhCCCCCEEeecCCCCCcceEEec-CCEEEEccCch-------HHHHhhhC
Confidence 33345444 455565554443 47777765 69999999999 89999984
No 61
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.20 E-value=2.4e-06 Score=70.32 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=40.2
Q ss_pred ceeEEeeeccccccccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151 34 ADVIKTHHNDSPLIRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 34 ~~~V~s~H~~~~Lf~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
...++..|++. +..+|++..+.+ ...++.. .++||+|||||.... ..||+||+..
T Consensus 128 ~~~~~~~H~d~--v~~lp~~~~vlA~~~~~~~~~~~--~~~~g~QfHPE~~~~---~~~~~~f~~~ 186 (189)
T PRK13525 128 PFPAVFIRAPY--IEEVGPGVEVLATVGGRIVAVRQ--GNILATSFHPELTDD---TRVHRYFLEM 186 (189)
T ss_pred CeEEEEEeCce--eeccCCCcEEEEEcCCEEEEEEe--CCEEEEEeCCccCCC---chHHHHHHHH
Confidence 45566668777 888898876654 1334443 589999999999754 7999999754
No 62
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=98.20 E-value=1e-06 Score=81.21 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=47.6
Q ss_pred eeecCCeEEecCcccCCcceeEEeeeccccc-----------c--ccccccceecc------cccccccccccEEEEeec
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHNDSPL-----------I--RALREQGKVIE------PLKDFHKDELRLYGLQFH 76 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~L-----------f--~~lp~~s~vi~------pi~Ai~~~~~~i~GVQFH 76 (188)
+.++|+.+.+++...||..+.|+ +...+. + ..+|.+..+.. .++|+++.++++||||||
T Consensus 324 a~AlGGkv~K~~~Gh~G~n~pV~--~~~~~~v~itsqnHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQFH 401 (415)
T PLN02771 324 GQALGGKTFKMKFGHHGGNHPVR--NNRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQYH 401 (415)
T ss_pred HHhcCCeEEECCCCcccceEEEE--ECCCCCEEEEecCHHHhhccccCCCceEEEEEeCCCCcEEEEEECCCCEEEEEcC
Confidence 56889999999999999888773 222111 1 24444433322 378999999999999999
Q ss_pred ccccCChh
Q psy7151 77 PEVDLTNE 84 (188)
Q Consensus 77 PE~~~t~~ 84 (188)
||+...+.
T Consensus 402 PEa~pgp~ 409 (415)
T PLN02771 402 PEASPGPH 409 (415)
T ss_pred CCCCCCCC
Confidence 99986654
No 63
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.13 E-value=3.9e-06 Score=79.62 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=31.0
Q ss_pred ccccccccccEEEEeecccccCChhhHHHHHHHHHHhhC
Q psy7151 60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~ 98 (188)
++|+++ .++||+|||||+.. +.|..||+||+..+|.
T Consensus 177 IaAI~~--gnI~GVQFHPE~s~-~~G~~L~~nFl~~~~~ 212 (538)
T PLN02617 177 IASVRK--GNVHAVQFHPEKSG-ATGLSILRRFLEPKSS 212 (538)
T ss_pred EEEEEe--CCEEEEEcCCccCc-hhHHHHHHHHHHhhhh
Confidence 456665 48999999999987 7999999999998885
No 64
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.11 E-value=4.1e-06 Score=69.15 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=34.2
Q ss_pred eeccccccccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151 40 HHNDSPLIRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV 96 (188)
Q Consensus 40 ~H~~~~Lf~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i 96 (188)
+|++. +..+|++..+.+ ..+|++ ..++||+|||||.... ..|++||+..+
T Consensus 144 ~H~~~--v~~lp~~~~~la~~~~~~~a~~--~~~~~g~QfHPE~~~~---~~l~~~f~~~~ 197 (200)
T PRK13527 144 IRAPA--ITKVGGDVEVLAKLDDRIVAVE--QGNVLATAFHPELTDD---TRIHEYFLKKV 197 (200)
T ss_pred Ecccc--ccccCCCeEEEEEECCEEEEEE--ECCEEEEEeCCCCCCC---CHHHHHHHHHH
Confidence 45454 556666655543 133554 3589999999997644 89999999764
No 65
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=98.08 E-value=1.9e-06 Score=73.62 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=40.5
Q ss_pred eeEEeeecccc---ccccc-cccceecc------cccccccccccEE-EEeecccccCCh-hhHHHHHHHH
Q psy7151 35 DVIKTHHNDSP---LIRAL-REQGKVIE------PLKDFHKDELRLY-GLQFHPEVDLTN-EGRTMLKNFL 93 (188)
Q Consensus 35 ~~V~s~H~~~~---Lf~~l-p~~s~vi~------pi~Ai~~~~~~i~-GVQFHPE~~~t~-~G~~il~nFl 93 (188)
..+|++|++.- -++.+ ..++.+++ .++|++.++.++| |||||||....+ ....||++|+
T Consensus 165 ~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 165 VEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred EEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence 47888888750 12333 45555543 3789998888877 999999987543 3577888884
No 66
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.07 E-value=2e-06 Score=73.26 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=42.2
Q ss_pred ccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh---cCCC-CCceEEEEecCC
Q psy7151 104 TLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR---HPFP-GPGLAIRVICGE 159 (188)
Q Consensus 104 ~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~---~~~p-~~~L~v~~~~~~ 159 (188)
+.+.+++.++.|||+++...+.-..++|+|||+||++++. .+++ .+.+++.||...
T Consensus 2 ~~~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~ 61 (248)
T cd00553 2 DLEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRY 61 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCC
Confidence 3567889999999999975433334449999999999983 3343 789999998653
No 67
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.06 E-value=2.8e-06 Score=70.81 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.0
Q ss_pred cccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151 67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
+.++||+|||||.++ +.|.+||+||++.
T Consensus 160 ~~n~~g~QFHPEkS~-~~G~~ll~nf~~~ 187 (192)
T PRK13142 160 FNNYIGIQFHPEKSG-TYGLQILRQAIQG 187 (192)
T ss_pred cCCEEEEecCcccCc-HhHHHHHHHHHhc
Confidence 369999999999976 8999999999864
No 68
>PRK13980 NAD synthetase; Provisional
Probab=98.03 E-value=4.5e-06 Score=71.99 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=43.2
Q ss_pred cccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcC---C-CCCceEEEEecC
Q psy7151 103 FTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHP---F-PGPGLAIRVICG 158 (188)
Q Consensus 103 W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~---~-p~~~L~v~~~~~ 158 (188)
.+++...+.++.|||+++.+.+.-..++|+|||+||++++..+ + +.+.+++.++..
T Consensus 8 ~~~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~ 67 (265)
T PRK13980 8 LDYEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSS 67 (265)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCC
Confidence 4677889999999999999754333444999999999998322 3 467899999864
No 69
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.98 E-value=1.2e-05 Score=70.12 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=50.9
Q ss_pred ecCCe-EEecCcccCCcceeEEeeec--ccccccccc---------------ccceecc---------------------
Q psy7151 18 LRPDL-IESASHLASNKADVIKTHHN--DSPLIRALR---------------EQGKVIE--------------------- 58 (188)
Q Consensus 18 ~~g~~-I~~~~~~~HGk~~~V~s~H~--~~~Lf~~lp---------------~~s~vi~--------------------- 58 (188)
++|+. ..+.+...||.+..++..-. ++.||+++| +|++.+.
T Consensus 108 ~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~ 187 (273)
T cd01747 108 LTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLTTND 187 (273)
T ss_pred HhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEEEEEEe
Confidence 34554 33356678998888853211 355787775 3444331
Q ss_pred ------cccccccccccEEEEeecccccCChhh--------------HHHHHHHHHHhhCCC
Q psy7151 59 ------PLKDFHKDELRLYGLQFHPEVDLTNEG--------------RTMLKNFLFDVCGLT 100 (188)
Q Consensus 59 ------pi~Ai~~~~~~i~GVQFHPE~~~t~~G--------------~~il~nFl~~i~~~~ 100 (188)
-++++++.+.|+||+|||||+...+-+ -+-+.||+..-|+..
T Consensus 188 d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~e~r~n 249 (273)
T cd01747 188 DWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKS 249 (273)
T ss_pred cCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 036788877899999999997644433 234566666555543
No 70
>PRK05380 pyrG CTP synthetase; Validated
Probab=97.95 E-value=4.4e-06 Score=79.04 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=45.1
Q ss_pred CCcceeEEeeeccccccccccccceecc------cccccccccccE-EEEeecccccCCh-hhHHHHHHHHHHhh
Q psy7151 31 SNKADVIKTHHNDSPLIRALREQGKVIE------PLKDFHKDELRL-YGLQFHPEVDLTN-EGRTMLKNFLFDVC 97 (188)
Q Consensus 31 HGk~~~V~s~H~~~~Lf~~lp~~s~vi~------pi~Ai~~~~~~i-~GVQFHPE~~~t~-~G~~il~nFl~~i~ 97 (188)
|-+-..||+.|++. ++.. ++.+.+ -++|++.++.++ .|||||||....+ .+..||++|+....
T Consensus 457 hrHryeVNs~h~qa--l~~~--GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~ 527 (533)
T PRK05380 457 HRHRYEVNNKYREQ--LEKA--GLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAAL 527 (533)
T ss_pred cccceecCHHHHHH--Hhhc--CeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHH
Confidence 44455788888877 5543 344432 278999887765 5999999987654 57899999997654
No 71
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=97.88 E-value=6.4e-06 Score=73.12 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCC---CCceEEEEe
Q psy7151 107 SREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFP---GPGLAIRVI 156 (188)
Q Consensus 107 ~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p---~~~L~v~~~ 156 (188)
+|+++.+++||++++++++++ |+|||+||+|++..+.. .+.+++-+.
T Consensus 1 ~~~~~~~~~l~~~v~~~kVvV---alSGGVDSsvla~ll~~~~G~~v~av~vd 50 (311)
T TIGR00884 1 NFIEEAVEEIREQVGDAKVII---ALSGGVDSSVAAVLAHRAIGDRLTCVFVD 50 (311)
T ss_pred ChHHHHHHHHHHHhCCCcEEE---EecCChHHHHHHHHHHHHhCCCEEEEEEe
Confidence 478999999999999999988 99999999999954432 456666554
No 72
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.82 E-value=2.1e-05 Score=66.99 Aligned_cols=30 Identities=30% Similarity=0.687 Sum_probs=20.9
Q ss_pred cccccccccccEEEEeecccccCChhhHHHHHHHHH
Q psy7151 59 PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 59 pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~ 94 (188)
+++|+++. .++||+|||||.. ..++++++.
T Consensus 169 ~iqa~~~~-~~i~gvQfHPE~~-----~~~~~~~~~ 198 (237)
T PRK09065 169 PHQAFRYG-PHAWGVQFHPEFT-----AHIMRAYLR 198 (237)
T ss_pred CeeEEEeC-CCEEEEEeCCcCC-----HHHHHHHHH
Confidence 46788775 3799999999974 344455443
No 73
>PRK00876 nadE NAD synthetase; Reviewed
Probab=97.81 E-value=2.3e-05 Score=70.17 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=42.1
Q ss_pred CcccchHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHhhcC----CCCCceEEEEecC
Q psy7151 102 NFTLKSREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVMRHP----FPGPGLAIRVICG 158 (188)
Q Consensus 102 ~W~~~~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva~~~----~p~~~L~v~~~~~ 158 (188)
+.+++..++.+.+|||++|+. .+.-..++|+|||+||+++|.++ .+.+++++.+|..
T Consensus 9 ~~~~~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~ 70 (326)
T PRK00876 9 KIDAAAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPER 70 (326)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCC
Confidence 356777889999999999886 22223334999999999999432 3467899999853
No 74
>PRK06186 hypothetical protein; Validated
Probab=97.80 E-value=1.3e-05 Score=68.68 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=41.5
Q ss_pred eeEEeeeccccccccccccceecc-----cccccccccc-cEEEEeecccccCC-hhhHHHHHHHHHHh
Q psy7151 35 DVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDEL-RLYGLQFHPEVDLT-NEGRTMLKNFLFDV 96 (188)
Q Consensus 35 ~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~-~i~GVQFHPE~~~t-~~G~~il~nFl~~i 96 (188)
..||+.|+|. ++ ..++.+++ -++|++.++. .+.|||||||-... .....||+.|+...
T Consensus 162 yeVNs~h~q~--i~--~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa 226 (229)
T PRK06186 162 YGVNPEFVAA--LE--SGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAA 226 (229)
T ss_pred EEECHHHHHH--Hh--cCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHH
Confidence 4588877777 54 44555543 2889997764 57999999998653 34468999999754
No 75
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.78 E-value=4.4e-05 Score=65.27 Aligned_cols=49 Identities=29% Similarity=0.575 Sum_probs=32.9
Q ss_pred EEeeeccccccccccccceecc-----cccccccccccEEEEeecccccCChhhHHHHHHHHH
Q psy7151 37 IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLF 94 (188)
Q Consensus 37 V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~ 94 (188)
+...|++. ..+|.+..+.+ +++|+++. .++||+|||||+. ..++++|+.
T Consensus 138 ~~~~H~d~---~~lP~~~~~LA~s~~~~~qa~~~~-~~v~g~QfHPE~~-----~~~~~~~i~ 191 (239)
T PRK06490 138 VYHWHREG---FDLPAGAELLATGDDFPNQAFRYG-DNAWGLQFHPEVT-----RAMMHRWVV 191 (239)
T ss_pred EEEECCcc---ccCCCCCEEEEeCCCCCeEEEEeC-CCEEEEeeCccCC-----HHHHHHHHH
Confidence 33335554 35777765543 57888874 4799999999997 466666664
No 76
>PRK13981 NAD synthetase; Provisional
Probab=97.77 E-value=2e-05 Score=74.06 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcC----CCCCceEEEEecC
Q psy7151 106 KSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHP----FPGPGLAIRVICG 158 (188)
Q Consensus 106 ~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~----~p~~~L~v~~~~~ 158 (188)
+.+.+.++.|||+++.+.+.-..++|+|||+||+|+|.++ .+++++++.||..
T Consensus 261 ~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~ 317 (540)
T PRK13981 261 AEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSR 317 (540)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCC
Confidence 5688999999999998765555566999999999999432 4578999999964
No 77
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=97.68 E-value=2.6e-05 Score=73.86 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=41.5
Q ss_pred CCcceeEEeeeccccccccccccceecc------cccccccccccEE-EEeecccccCCh-hhHHHHHHHHH
Q psy7151 31 SNKADVIKTHHNDSPLIRALREQGKVIE------PLKDFHKDELRLY-GLQFHPEVDLTN-EGRTMLKNFLF 94 (188)
Q Consensus 31 HGk~~~V~s~H~~~~Lf~~lp~~s~vi~------pi~Ai~~~~~~i~-GVQFHPE~~~t~-~G~~il~nFl~ 94 (188)
|-+-..||+.|++. ++. .+..+++ .++|++.++.|++ |||||||....+ ....||+.|+.
T Consensus 457 hrHry~VNs~h~q~--l~~--~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~ 524 (525)
T TIGR00337 457 HRHRYEVNNEYREQ--LEN--KGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVK 524 (525)
T ss_pred ccceEEECHHHHHh--hhh--CCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHh
Confidence 33445688877776 443 3344432 3889998877765 999999987543 46789999984
No 78
>PLN02327 CTP synthase
Probab=97.59 E-value=5.5e-05 Score=72.01 Aligned_cols=66 Identities=14% Similarity=0.314 Sum_probs=45.3
Q ss_pred CCcceeEEeeec-------ccccccccc-ccceecc------cccccccccccEE-EEeecccccCC-hhhHHHHHHHHH
Q psy7151 31 SNKADVIKTHHN-------DSPLIRALR-EQGKVIE------PLKDFHKDELRLY-GLQFHPEVDLT-NEGRTMLKNFLF 94 (188)
Q Consensus 31 HGk~~~V~s~H~-------~~~Lf~~lp-~~s~vi~------pi~Ai~~~~~~i~-GVQFHPE~~~t-~~G~~il~nFl~ 94 (188)
.|+...||++|+ +. ++.+. .+..+++ .++++++++.+++ |||||||.+.. .....+|..|+.
T Consensus 467 Yg~~~~VnerHrHRYeVN~q~--v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~ 544 (557)
T PLN02327 467 YGNVSFVDERHRHRYEVNPEM--VPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIA 544 (557)
T ss_pred hCCccceeeeeccccccCHHH--HHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHH
Confidence 455556888877 44 55552 4444443 2789988887776 99999998754 345789999997
Q ss_pred HhhC
Q psy7151 95 DVCG 98 (188)
Q Consensus 95 ~i~~ 98 (188)
...+
T Consensus 545 Aa~~ 548 (557)
T PLN02327 545 AASG 548 (557)
T ss_pred HHHH
Confidence 6543
No 79
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=97.54 E-value=8.4e-05 Score=61.11 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=30.5
Q ss_pred cccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHH
Q psy7151 47 IRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93 (188)
Q Consensus 47 f~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl 93 (188)
+..+|++..+++ .+.|++ .+++||+|||||+... ..+++.|+
T Consensus 138 v~~lp~~~~vla~~~~~~~a~~--~~~~~gvQfHPE~~~~---~~~~~~f~ 183 (184)
T TIGR03800 138 IVSVGNGVEILAKVGNRIVAVR--QGNILVSSFHPELTDD---HRVHEYFL 183 (184)
T ss_pred cccCCCCeEEEEEeCCeeEEEE--eCCEEEEEeCCccCCC---chHHHHhh
Confidence 677888877665 244664 3479999999998632 38888887
No 80
>PRK05665 amidotransferase; Provisional
Probab=97.51 E-value=0.00017 Score=61.82 Aligned_cols=43 Identities=30% Similarity=0.442 Sum_probs=30.4
Q ss_pred eEEeeeccccccccccccceecc-----cccccccccccEEEEeecccccC
Q psy7151 36 VIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDL 81 (188)
Q Consensus 36 ~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~ 81 (188)
.+...|.+. +..||++..+.+ ++.|++. ..++||+|||||...
T Consensus 143 ~~~~~H~D~--V~~LP~ga~~La~s~~~~~q~~~~-~~~~~g~QfHPE~~~ 190 (240)
T PRK05665 143 TLLISHQDQ--VTALPEGATVIASSDFCPFAAYHI-GDQVLCFQGHPEFVH 190 (240)
T ss_pred EEEEEcCCe--eeeCCCCcEEEEeCCCCcEEEEEe-CCCEEEEecCCcCcH
Confidence 344456666 778888766543 5677764 358999999999864
No 81
>PRK08250 glutamine amidotransferase; Provisional
Probab=97.47 E-value=0.0001 Score=62.79 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=37.8
Q ss_pred eeecCCeEEecCcccCCcceeEEeeec-ccccccccc----------------ccceecc-----cccccccccccEEEE
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTHHN-DSPLIRALR----------------EQGKVIE-----PLKDFHKDELRLYGL 73 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~H~-~~~Lf~~lp----------------~~s~vi~-----pi~Ai~~~~~~i~GV 73 (188)
+.+|||.|.+.+...+|....-.+.+. +.++|.++| ++..+.+ +..|+... .++||+
T Consensus 98 a~alGg~V~~~~~~e~G~~~v~lt~~g~~d~l~~~~~~~~~v~~~H~d~~~lP~~a~~LA~s~~~~~qa~~~~-~~~~g~ 176 (235)
T PRK08250 98 GEALGAKYEHSPEKEIGYFPITLTEAGLKDPLLSHFGSTLTVGHWHNDMPGLTDQAKVLATSEGCPRQIVQYS-NLVYGF 176 (235)
T ss_pred HHHhCceeccCCCCceeEEEEEEccccccCchhhcCCCCcEEEEEecceecCCCCCEEEECCCCCCceEEEeC-CCEEEE
Confidence 567899999888777776432111111 123555554 3322221 35566543 479999
Q ss_pred eeccccc
Q psy7151 74 QFHPEVD 80 (188)
Q Consensus 74 QFHPE~~ 80 (188)
|||||..
T Consensus 177 QfHPE~~ 183 (235)
T PRK08250 177 QCHMEFT 183 (235)
T ss_pred eecCcCC
Confidence 9999975
No 82
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=97.45 E-value=0.00013 Score=62.26 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHhCC---CcEEEEeeccccCCChhhHhhcC---CCCCceEEEEe
Q psy7151 106 KSREEELIKYVKETVGN---MKVLVRKLGLDLGLTPEVVMRHP---FPGPGLAIRVI 156 (188)
Q Consensus 106 ~~~ie~iI~~IRe~Vg~---~kVi~~~~GlSGGvDSavva~~~---~p~~~L~v~~~ 156 (188)
...++++.++||+.|.. ++|++ |+|||+||++++.++ ++...+++.++
T Consensus 3 ~~~~~~l~~~l~~~v~~~~~~~V~v---glSGGiDSsvla~l~~~~~~~~~~~~~~~ 56 (250)
T TIGR00552 3 IKYVEEIEDFLRGYVQKSGAKGVVL---GLSGGIDSAVVAALCVEALGEQNHALLLP 56 (250)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEE---ECCCcHHHHHHHHHHHHhhCCceEEEEEC
Confidence 35678888899998875 45555 999999999998432 33256666654
No 83
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=97.35 E-value=0.00015 Score=61.18 Aligned_cols=35 Identities=17% Similarity=0.420 Sum_probs=30.1
Q ss_pred ccccccccccEEEEeecccccC-----ChhhHHHHHHHHH
Q psy7151 60 LKDFHKDELRLYGLQFHPEVDL-----TNEGRTMLKNFLF 94 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~~-----t~~G~~il~nFl~ 94 (188)
++++.+++.+++|+|||||+.. +..|..||+||+.
T Consensus 179 ia~i~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 179 IAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred hcccCCCCCCEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 7788877789999999999984 4689999999984
No 84
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.34 E-value=0.00014 Score=70.52 Aligned_cols=53 Identities=9% Similarity=-0.049 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh---hcC----C--CCCceEEEEecC
Q psy7151 106 KSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM---RHP----F--PGPGLAIRVICG 158 (188)
Q Consensus 106 ~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva---~~~----~--p~~~L~v~~~~~ 158 (188)
+.+.+.++.++++++...+.-..++|||||+||+|++ ..+ . +.+.+|+.||+.
T Consensus 342 ~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~~ 403 (679)
T PRK02628 342 YEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGF 403 (679)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCCC
Confidence 5577888999999998655555556999999999876 222 2 578999999974
No 85
>PRK07053 glutamine amidotransferase; Provisional
Probab=97.23 E-value=0.00028 Score=60.15 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=21.6
Q ss_pred cccccceecc-----cccccccccccEEEEeecccccC
Q psy7151 49 ALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDL 81 (188)
Q Consensus 49 ~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~ 81 (188)
.+|++....+ +..|+.. ..++||+|||||...
T Consensus 146 ~lP~ga~~La~s~~~~~qaf~~-g~~~~g~QfHpE~~~ 182 (234)
T PRK07053 146 DLPEGATLLASTPACRHQAFAW-GNHVLALQFHPEARE 182 (234)
T ss_pred ecCCCCEEEEcCCCCCeeEEEe-CCCEEEEeeCccCCH
Confidence 4666654433 3556654 358999999999864
No 86
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.20 E-value=0.0003 Score=60.21 Aligned_cols=34 Identities=32% Similarity=0.615 Sum_probs=23.5
Q ss_pred cccccccceecc-----cccccccccccEEEEeecccccC
Q psy7151 47 IRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDL 81 (188)
Q Consensus 47 f~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~ 81 (188)
+..+|.+..+.+ +++|+++. .++||+|||||...
T Consensus 156 V~~lp~~~~vlA~s~~~~vqa~~~~-~~~~gvQfHPE~~~ 194 (242)
T PRK07567 156 VSALPPGAVLLATSPTCPVQMFRVG-ENVYATQFHPELDA 194 (242)
T ss_pred hhhCCCCCEEEEeCCCCCEEEEEeC-CCEEEEEeCCcCCH
Confidence 445555554433 47788764 47999999999864
No 87
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=97.07 E-value=0.0003 Score=62.53 Aligned_cols=83 Identities=57% Similarity=0.935 Sum_probs=57.8
Q ss_pred CeeeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccceecccccccccccccEEEEeecccccCChhhHHHH
Q psy7151 10 QTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTML 89 (188)
Q Consensus 10 ~~~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il 89 (188)
..++++||.++|.++..+ |.+..++++|+-.++-... ...++.|+.-+...+
T Consensus 118 ~~~la~Gt~~dD~~Es~~----G~~~~iks~~~~~gl~~~~--~~~ii~PL~~l~K~E---------------------- 169 (311)
T TIGR00884 118 AEYLAQGTIYPDVIESAA----GTAHVIKSHHNVGGLPEDM--KLKLVEPLRELFKDE---------------------- 169 (311)
T ss_pred CCEEEECCCChhhhhhcc----ChhHhhhccCccccCChhh--cCceEEEcccCcHHH----------------------
Confidence 458999999999998764 6666787766533222111 133566665433221
Q ss_pred HHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEec
Q psy7151 90 KNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVIC 157 (188)
Q Consensus 90 ~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~ 157 (188)
| +.+|...|++..++.++|||+|+|++|++|
T Consensus 170 --------------------------V-----------r~la~~lgLp~~~~~~~Pf~~p~La~Ri~g 200 (311)
T TIGR00884 170 --------------------------V-----------RKLGKELGLPEEIVWRHPFPGPGLAVRVLG 200 (311)
T ss_pred --------------------------H-----------HHHHHHcCCCHHHhhCCCCCCCceEeeeec
Confidence 1 334677789999999999999999999987
No 88
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=97.03 E-value=0.00043 Score=67.67 Aligned_cols=37 Identities=11% Similarity=-0.095 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh
Q psy7151 107 SREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 107 ~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~ 143 (188)
.+....+-||++++...+..+.++|||||+||+++|.
T Consensus 330 ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~ 366 (700)
T PLN02339 330 EIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAA 366 (700)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHH
Confidence 4666668899999987777777779999999999663
No 89
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=97.02 E-value=0.00078 Score=61.15 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=50.6
Q ss_pred eeecCCeEEecCcccCCcceeEEee---------eccccccc--cccccceec------ccccccccccccEEEEeeccc
Q psy7151 16 GTLRPDLIESASHLASNKADVIKTH---------HNDSPLIR--ALREQGKVI------EPLKDFHKDELRLYGLQFHPE 78 (188)
Q Consensus 16 g~~~g~~I~~~~~~~HGk~~~V~s~---------H~~~~Lf~--~lp~~s~vi------~pi~Ai~~~~~~i~GVQFHPE 78 (188)
+.++|+...++..=-||-...|+-. ++..--++ .++....+. ..+++++|++.|++.||||||
T Consensus 264 alA~Ga~T~KmkFGHrG~NhPV~dl~tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPE 343 (368)
T COG0505 264 ALALGAKTYKMKFGHRGANHPVKDLDTGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPE 343 (368)
T ss_pred HHhcCCceeecccCCCCCCcCcccccCCeEEEEecCCceecChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCC
Confidence 5678888888876667755555311 11100000 111111111 137899999999999999999
Q ss_pred ccCCh-hhHHHHHHHHHHhhC
Q psy7151 79 VDLTN-EGRTMLKNFLFDVCG 98 (188)
Q Consensus 79 ~~~t~-~G~~il~nFl~~i~~ 98 (188)
..--+ +-.-+|..|+..+..
T Consensus 344 AsPGPhDt~ylFd~Fi~~~~~ 364 (368)
T COG0505 344 ASPGPHDTRYLFDEFIELMEA 364 (368)
T ss_pred CCCCCcccHHHHHHHHHHHHH
Confidence 97544 346788888876543
No 90
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=96.85 E-value=0.0017 Score=52.91 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=31.6
Q ss_pred eeccccccccccccceeccc----ccccccccccEEEEeecccccCChhhHHHHHHHH
Q psy7151 40 HHNDSPLIRALREQGKVIEP----LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93 (188)
Q Consensus 40 ~H~~~~Lf~~lp~~s~vi~p----i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl 93 (188)
.|.+. +..+|++..+.+. ..|++. +++||+|||||... ...++++|+
T Consensus 133 ~h~~~--v~~~p~~~~~la~~~~~~~a~~~--~~~~g~qfHPE~~~---~~~~~~~f~ 183 (183)
T cd01749 133 IRAPV--IEEVGPGVEVLAEYDGKIVAVRQ--GNVLATSFHPELTD---DTRIHEYFL 183 (183)
T ss_pred EECcE--EEEcCCCcEEEEecCCEEEEEEE--CCEEEEEcCCccCC---CcchhhhhC
Confidence 46665 8888887766541 235553 47999999999863 236666663
No 91
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=96.79 E-value=0.00087 Score=59.25 Aligned_cols=89 Identities=53% Similarity=0.827 Sum_probs=57.9
Q ss_pred CeeeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccceecccccccccccccEEEEeecccccCChhhHHHH
Q psy7151 10 QTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTML 89 (188)
Q Consensus 10 ~~~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il 89 (188)
...+++|+.++|.++..+ .-+.+..++++|+-.++-.. ....++.|+.-+...
T Consensus 101 ~~~Ia~Gh~~dD~~Es~~--~~~~~~~IKs~~n~~Gl~a~--~~~~vi~PL~~l~K~----------------------- 153 (295)
T cd01997 101 AEYLAQGTLYPDVIESGS--GKGSADTIKSHHNVGGLPED--MKLKLIEPLRDLFKD----------------------- 153 (295)
T ss_pred CCEEEECCcccchhhhcc--cccccccccccccccccchH--hhCCcccccccCcHH-----------------------
Confidence 458999999999998765 22235667765543322111 223456665543321
Q ss_pred HHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCCch
Q psy7151 90 KNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEER 161 (188)
Q Consensus 90 ~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~~~ 161 (188)
+| +.+|..-|++...+.++|||+|+|++|++|.-++
T Consensus 154 -------------------------EV-----------R~lar~lGLp~~~~~~~Pfp~p~La~Ri~g~it~ 189 (295)
T cd01997 154 -------------------------EV-----------RELGRELGLPEEIVERHPFPGPGLAVRILGEVTE 189 (295)
T ss_pred -------------------------HH-----------HHHHHHcCCCchhhCCCCCCCCcceeEEecCCCH
Confidence 12 3346667899999999999999999999874343
No 92
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=96.56 E-value=0.002 Score=55.85 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.1
Q ss_pred ccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151 68 LRLYGLQFHPEVDLTNEGRTMLKNFLFDV 96 (188)
Q Consensus 68 ~~i~GVQFHPE~~~t~~G~~il~nFl~~i 96 (188)
.+++|.|||||.+... +|.+||+..+
T Consensus 189 gnvlatqFHPEls~d~---rih~~Fl~~~ 214 (248)
T PLN02832 189 GNLLATAFHPELTADT---RWHSYFVKMV 214 (248)
T ss_pred CCEEEEEccCccCCcc---HHHHHHHHHH
Confidence 6999999999998765 9999999765
No 93
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=95.89 E-value=0.0084 Score=53.73 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=38.1
Q ss_pred CCCCcccc-hHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHhhc---CCCCCceEEEEe
Q psy7151 99 LTGNFTLK-SREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVMRH---PFPGPGLAIRVI 156 (188)
Q Consensus 99 ~~~~W~~~-~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva~~---~~p~~~L~v~~~ 156 (188)
-+.+|+.. +-.+++++++|+.-+. -.+++ |+|||+||++++.. .+..+.|++.+.
T Consensus 34 ~~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV---~lSGGkDSs~la~ll~~~~gl~~l~vt~~ 93 (343)
T TIGR03573 34 SKIDWDEREKELEELVDKIKKKGGGRYDCII---GVSGGKDSTYQAHVLKKKLGLNPLLVTVD 93 (343)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE---ECCCCHHHHHHHHHHHHHhCCceEEEEEC
Confidence 34688654 4678888899887543 34666 99999999999832 233456777664
No 94
>KOG0370|consensus
Probab=95.66 E-value=0.0051 Score=62.03 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=48.4
Q ss_pred ccccccccccEEEEeecccccCChhh-HHHHHHHHHHhhCCCCCcccchHHHH-HHHHHHHHhCCCcEEE
Q psy7151 60 LKDFHKDELRLYGLQFHPEVDLTNEG-RTMLKNFLFDVCGLTGNFTLKSREEE-LIKYVKETVGNMKVLV 127 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~~t~~G-~~il~nFl~~i~~~~~~W~~~~~ie~-iI~~IRe~Vg~~kVi~ 127 (188)
=+++.|.++|++.+|||||..-.+.- .-+|..|++.+-+....-+.+.++++ .+..+|.++....+++
T Consensus 315 NEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~tAs~~~t~~~~~~~~~~~~kVlvlG 384 (1435)
T KOG0370|consen 315 NEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKSTPTASAFITEPAKAAPRVEVKKVLVLG 384 (1435)
T ss_pred CceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHHHhcCCcccccccccccccccccccEEEEEc
Confidence 35788889999999999999876654 78899999988877666666666532 2344565555444444
No 95
>KOG1559|consensus
Probab=94.78 E-value=0.033 Score=48.95 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=17.5
Q ss_pred ccccccccccEEEEeeccccc
Q psy7151 60 LKDFHKDELRLYGLQFHPEVD 80 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~ 80 (188)
+..++...+|++|+|||||..
T Consensus 251 vSTv~~~kYPvtgfQWHPEKn 271 (340)
T KOG1559|consen 251 VSTVESKKYPVTGFQWHPEKN 271 (340)
T ss_pred EEeecceeccceeeeecCccC
Confidence 446777778999999999985
No 96
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=94.78 E-value=0.024 Score=48.51 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=25.6
Q ss_pred HHHHhCC-CcEEEEeeccccCCChhhHhhcCC--CCCceEEEEec
Q psy7151 116 VKETVGN-MKVLVRKLGLDLGLTPEVVMRHPF--PGPGLAIRVIC 157 (188)
Q Consensus 116 IRe~Vg~-~kVi~~~~GlSGGvDSavva~~~~--p~~~L~v~~~~ 157 (188)
+++.+.+ +++++ ++|||+||++++..+. ..+.+++.+..
T Consensus 5 l~~~l~~~~~vlV---a~SGGvDSs~ll~la~~~g~~v~av~~~~ 46 (252)
T TIGR00268 5 LRNFLKEFKKVLI---AYSGGVDSSLLAAVCSDAGTEVLAITVVS 46 (252)
T ss_pred HHHHHHhcCCEEE---EecCcHHHHHHHHHHHHhCCCEEEEEecC
Confidence 3444443 55666 9999999999995443 23566776653
No 97
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=94.70 E-value=0.012 Score=53.51 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=24.5
Q ss_pred CCcEEEEeeccccCCChhhHhhcCCC--CCceEEEEecCC
Q psy7151 122 NMKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVICGE 159 (188)
Q Consensus 122 ~~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~~~~ 159 (188)
..+|++ |+||||||+|+|.++-. =.+.|+-|=..+
T Consensus 3 ~~kV~v---~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~ 39 (356)
T COG0482 3 KKKVLV---GMSGGVDSSVAAYLLKEQGYEVIGLFMKNWD 39 (356)
T ss_pred CcEEEE---EccCCHHHHHHHHHHHHcCCeEEEEEEEeec
Confidence 356777 99999999999943332 236777776544
No 98
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=94.64 E-value=0.049 Score=47.75 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=27.0
Q ss_pred HHHHHHhCCC-cEEEEeeccccCCChhhHhhcCCC---CCceEEEEe
Q psy7151 114 KYVKETVGNM-KVLVRKLGLDLGLTPEVVMRHPFP---GPGLAIRVI 156 (188)
Q Consensus 114 ~~IRe~Vg~~-kVi~~~~GlSGGvDSavva~~~~p---~~~L~v~~~ 156 (188)
+.++..+++. +++. +-|||+||+++|..+.. ++++++-+.
T Consensus 8 ~~l~~~ik~~~kv~v---AfSGGvDSslLa~la~~~lG~~v~AvTv~ 51 (269)
T COG1606 8 ERLKKAIKEKKKVVV---AFSGGVDSSLLAKLAKEALGDNVVAVTVD 51 (269)
T ss_pred HHHHHHHhhcCeEEE---EecCCccHHHHHHHHHHHhccceEEEEEe
Confidence 3444444444 5655 99999999999965532 677777653
No 99
>PRK00919 GMP synthase subunit B; Validated
Probab=94.54 E-value=0.032 Score=49.74 Aligned_cols=28 Identities=54% Similarity=0.992 Sum_probs=24.8
Q ss_pred eccccCCChhhHhhcCCCCCceEEEEec
Q psy7151 130 LGLDLGLTPEVVMRHPFPGPGLAIRVIC 157 (188)
Q Consensus 130 ~GlSGGvDSavva~~~~p~~~L~v~~~~ 157 (188)
+|..-|++...+.|+|||+|+|+.|+++
T Consensus 171 la~~lGLp~~~~~r~p~~~pcLa~Ri~g 198 (307)
T PRK00919 171 VARALGLPEEISERMPFPGPGLAVRIIG 198 (307)
T ss_pred HHHHcCCChhhhCCCCCCCCceeEEeec
Confidence 4667789999999999999999999975
No 100
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=94.23 E-value=0.012 Score=53.51 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=19.6
Q ss_pred cEEEEeeccccCCChhhHhhcCCC--CCceEEEEecCC
Q psy7151 124 KVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVICGE 159 (188)
Q Consensus 124 kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~~~~ 159 (188)
+|++ |+||||||+|+|.++-. -.+.|+-|-..+
T Consensus 2 kV~v---amSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~ 36 (356)
T PF03054_consen 2 KVLV---AMSGGVDSSVAAALLKEQGYDVIGVTMRNWD 36 (356)
T ss_dssp EEEE---E--SSHHHHHHHHHHHHCT-EEEEEEEE-SS
T ss_pred eEEE---EccCCHHHHHHHHHHHhhcccceEEEEEEec
Confidence 4555 99999999999943321 236777776544
No 101
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=94.04 E-value=0.02 Score=50.73 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=18.6
Q ss_pred eeccccCCChhhHhhcCCC---CCceEEEE
Q psy7151 129 KLGLDLGLTPEVVMRHPFP---GPGLAIRV 155 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~p---~~~L~v~~ 155 (188)
++|+|||+||++++..+.. .+.+++-+
T Consensus 3 lVa~SGGVDSsvla~ll~~~lG~~v~aV~v 32 (295)
T cd01997 3 ILALSGGVDSTVAAVLLHKAIGDRLTCVFV 32 (295)
T ss_pred EEEEcCChHHHHHHHHHHHHhCCcEEEEEe
Confidence 3499999999999954443 23455544
No 102
>KOG2805|consensus
Probab=93.57 E-value=0.044 Score=49.49 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.1
Q ss_pred CcEEEEeeccccCCChhhHhhcCCC--CCceEEEEec
Q psy7151 123 MKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVIC 157 (188)
Q Consensus 123 ~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~~ 157 (188)
.+|++ |+||||||+|+|+++.. -++.|+-|-.
T Consensus 6 ~~Vvv---amSgGVDSsVaa~Ll~~~g~~v~gv~M~n 39 (377)
T KOG2805|consen 6 DRVVV---AMSGGVDSSVAARLLAARGYNVTGVFMKN 39 (377)
T ss_pred ceEEE---EecCCchHHHHHHHHHhcCCCeeEEeeec
Confidence 34555 99999999999964432 2477787764
No 103
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=93.56 E-value=0.073 Score=41.37 Aligned_cols=28 Identities=18% Similarity=0.040 Sum_probs=18.8
Q ss_pred eeccccCCChhhHhhcCC---CCCceEEEEe
Q psy7151 129 KLGLDLGLTPEVVMRHPF---PGPGLAIRVI 156 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~---p~~~L~v~~~ 156 (188)
++++|||+||++++..+. +.+.+++-+.
T Consensus 5 ~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~ 35 (154)
T cd01996 5 IIGVSGGKDSSYALYLLKEKYGLNPLAVTVD 35 (154)
T ss_pred EEECCCchhHHHHHHHHHHHhCCceEEEEeC
Confidence 459999999999994432 2245555543
No 104
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=93.50 E-value=0.062 Score=48.82 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=22.1
Q ss_pred CcEEEEeeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151 123 MKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVI 156 (188)
Q Consensus 123 ~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~ 156 (188)
++|++ |+|||+||+|+|.++-. -.+.++.|.
T Consensus 6 ~kVlV---alSGGVDSsvaa~LL~~~G~~V~~v~~~ 38 (360)
T PRK14665 6 KRVLL---GMSGGTDSSVAAMLLLEAGYEVTGVTFR 38 (360)
T ss_pred CEEEE---EEcCCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 45666 99999999999954432 246677664
No 105
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=93.17 E-value=0.072 Score=42.64 Aligned_cols=27 Identities=15% Similarity=-0.080 Sum_probs=18.0
Q ss_pred eeccccCCChhhHhhcCCC--CCceEEEE
Q psy7151 129 KLGLDLGLTPEVVMRHPFP--GPGLAIRV 155 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~p--~~~L~v~~ 155 (188)
++++|||+||++++..+.. .+..++.+
T Consensus 3 lv~~SGG~DS~~la~ll~~~g~~v~av~~ 31 (177)
T cd01712 3 LALLSGGIDSPVAAWLLMKRGIEVDALHF 31 (177)
T ss_pred EEEecCChhHHHHHHHHHHcCCeEEEEEE
Confidence 4599999999999944433 23444444
No 106
>PRK00074 guaA GMP synthase; Reviewed
Probab=93.02 E-value=0.079 Score=50.13 Aligned_cols=29 Identities=69% Similarity=1.300 Sum_probs=25.0
Q ss_pred eccccCCChhhHhhcCCCCCceEEEEecC
Q psy7151 130 LGLDLGLTPEVVMRHPFPGPGLAIRVICG 158 (188)
Q Consensus 130 ~GlSGGvDSavva~~~~p~~~L~v~~~~~ 158 (188)
++..-|++...+.++|||+|+|++|++|.
T Consensus 373 ~a~~~gLp~~~~~~~p~p~~~la~Ri~g~ 401 (511)
T PRK00074 373 LGLELGLPEEIVYRHPFPGPGLAIRILGE 401 (511)
T ss_pred HHHHcCCCHHHhCCCCCCCCceeeEEecc
Confidence 35556799999999999999999999873
No 107
>KOG0623|consensus
Probab=92.72 E-value=0.093 Score=48.18 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=26.8
Q ss_pred ccccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151 60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
+.|+.. .+++++|||||.+. +.|...+++||..
T Consensus 175 i~ai~k--nN~~AtQFHPEKSG-~aGL~vl~~FL~~ 207 (541)
T KOG0623|consen 175 ISAIRK--NNVHATQFHPEKSG-EAGLSVLRRFLHQ 207 (541)
T ss_pred HHHHhc--CceeeEeccccccc-chhHHHHHHHHhc
Confidence 556653 58999999999964 5799999999974
No 108
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=92.46 E-value=0.074 Score=48.44 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=22.2
Q ss_pred CcEEEEeeccccCCChhhHhhcCC--CCCceEEEEec
Q psy7151 123 MKVLVRKLGLDLGLTPEVVMRHPF--PGPGLAIRVIC 157 (188)
Q Consensus 123 ~kVi~~~~GlSGGvDSavva~~~~--p~~~L~v~~~~ 157 (188)
++|++ |+|||+||++++..+- .-..+++.|..
T Consensus 6 ~kVlV---a~SGGvDSsv~a~lL~~~G~eV~av~~~~ 39 (362)
T PRK14664 6 KRVLV---GMSGGIDSTATCLMLQEQGYEIVGVTMRV 39 (362)
T ss_pred CEEEE---EEeCCHHHHHHHHHHHHcCCcEEEEEecC
Confidence 46666 9999999999884322 23467777653
No 109
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=91.81 E-value=0.26 Score=41.34 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=15.5
Q ss_pred CCcEEEEeeccccCCChhhHhh
Q psy7151 122 NMKVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 122 ~~kVi~~~~GlSGGvDSavva~ 143 (188)
+..|.+ .+|||+||++++.
T Consensus 15 ~~~v~~---~LSGGlDSs~va~ 33 (269)
T cd01991 15 DVPVGV---LLSGGLDSSLVAA 33 (269)
T ss_pred CCceEE---eecccHHHHHHHH
Confidence 455666 9999999999993
No 110
>PRK13795 hypothetical protein; Provisional
Probab=91.20 E-value=0.26 Score=47.85 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHHHHHhCC--CcEEEEeeccccCCChhhHhh
Q psy7151 104 TLKSREEELIKYVKETVGN--MKVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 104 ~~~~~ie~iI~~IRe~Vg~--~kVi~~~~GlSGGvDSavva~ 143 (188)
.++.++++++++||+.+.. .++.+ +.|||.||+|++.
T Consensus 223 ~l~~~~~~ai~~Ir~~~~~~~~~v~V---a~SGGKDS~vll~ 261 (636)
T PRK13795 223 HLEEKEKEAVNFIRGVAEKYNLPVSV---SFSGGKDSLVVLD 261 (636)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEE---EecCcHHHHHHHH
Confidence 4567888999999998863 45666 9999999999993
No 111
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=90.96 E-value=0.086 Score=38.62 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=13.3
Q ss_pred eeccccCCChhhHhh
Q psy7151 129 KLGLDLGLTPEVVMR 143 (188)
Q Consensus 129 ~~GlSGGvDSavva~ 143 (188)
++++|||+||++++.
T Consensus 2 ~v~~SGG~DS~~ll~ 16 (103)
T cd01986 2 LVAFSGGKDSSVAAA 16 (103)
T ss_pred EEEEeCcHHHHHHHH
Confidence 469999999999994
No 112
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=90.95 E-value=0.096 Score=42.91 Aligned_cols=29 Identities=14% Similarity=-0.103 Sum_probs=19.6
Q ss_pred eeccccCCChhhHhhcCCC--CCceEEEEec
Q psy7151 129 KLGLDLGLTPEVVMRHPFP--GPGLAIRVIC 157 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~p--~~~L~v~~~~ 157 (188)
++++|||+||++++..+.. .+..++.+..
T Consensus 2 vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~ 32 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDEGYEVHAITFDY 32 (201)
T ss_pred EEEeccHHHHHHHHHHHHHcCCcEEEEEEEC
Confidence 4699999999999943322 2456666553
No 113
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=90.93 E-value=0.19 Score=42.99 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=15.7
Q ss_pred CCcEEEEeeccccCCChhhHhh
Q psy7151 122 NMKVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 122 ~~kVi~~~~GlSGGvDSavva~ 143 (188)
.+++++ |+|||+||++++.
T Consensus 29 ~~kilV---a~SGG~DS~~LL~ 47 (258)
T PRK10696 29 GDRVMV---CLSGGKDSYTLLD 47 (258)
T ss_pred CCEEEE---EecCCHHHHHHHH
Confidence 456777 9999999999883
No 114
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=90.74 E-value=0.21 Score=40.89 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhC-CCcEEEEeeccccCCChhhHhh
Q psy7151 108 REEELIKYVKETVG-NMKVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 108 ~ie~iI~~IRe~Vg-~~kVi~~~~GlSGGvDSavva~ 143 (188)
+-+.+.+-|++.+. +..+.+ -+|||+||+.++.
T Consensus 2 ~r~~l~~av~~rl~~~~~i~~---~LSGGlDSs~i~~ 35 (255)
T PF00733_consen 2 LRELLEEAVARRLRSDKPIGI---LLSGGLDSSAIAA 35 (255)
T ss_dssp HHHHHHHHHHHHCGCTSEEEE---E--SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEE---ECCCChhHHHHHH
Confidence 34555666777765 556666 8999999999993
No 115
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=90.71 E-value=0.14 Score=41.06 Aligned_cols=15 Identities=7% Similarity=0.228 Sum_probs=13.1
Q ss_pred eeccccCCChhhHhh
Q psy7151 129 KLGLDLGLTPEVVMR 143 (188)
Q Consensus 129 ~~GlSGGvDSavva~ 143 (188)
++|+|||+||++++.
T Consensus 3 ~va~SGG~DS~~ll~ 17 (189)
T TIGR02432 3 LVAVSGGVDSMALLH 17 (189)
T ss_pred EEEeCCCHHHHHHHH
Confidence 349999999999994
No 116
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=90.53 E-value=0.3 Score=41.83 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=16.2
Q ss_pred CcEEEEeeccccCCChhhHhhcC
Q psy7151 123 MKVLVRKLGLDLGLTPEVVMRHP 145 (188)
Q Consensus 123 ~kVi~~~~GlSGGvDSavva~~~ 145 (188)
.++++ |+|||.||+++...+
T Consensus 22 ~~ilV---avSGGkDS~~ll~~L 41 (298)
T COG0037 22 YKILV---AVSGGKDSLALLHLL 41 (298)
T ss_pred CeEEE---EeCCChHHHHHHHHH
Confidence 56666 999999999999433
No 117
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=90.19 E-value=0.37 Score=42.82 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHh
Q psy7151 105 LKSREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVM 142 (188)
Q Consensus 105 ~~~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva 142 (188)
++....+.+..||+.+.+ ++++. +.|||.||+|+.
T Consensus 9 L~~le~esi~iLrea~~~f~~~vv---~~SGGKDS~VLL 44 (301)
T PRK05253 9 LDQLEAESIHILREVAAEFENPVM---LYSIGKDSSVML 44 (301)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEE---EecCCHHHHHHH
Confidence 455667778888887775 45555 999999999988
No 118
>PRK08349 hypothetical protein; Validated
Probab=89.17 E-value=0.2 Score=41.13 Aligned_cols=17 Identities=18% Similarity=0.086 Sum_probs=13.8
Q ss_pred eeccccCCChhhHhhcC
Q psy7151 129 KLGLDLGLTPEVVMRHP 145 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~ 145 (188)
++++|||+||+|++..+
T Consensus 4 vvllSGG~DS~v~~~~l 20 (198)
T PRK08349 4 VALLSSGIDSPVAIYLM 20 (198)
T ss_pred EEEccCChhHHHHHHHH
Confidence 34999999999999433
No 119
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=89.16 E-value=0.17 Score=45.50 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=19.3
Q ss_pred eeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151 129 KLGLDLGLTPEVVMRHPFP--GPGLAIRVI 156 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~p--~~~L~v~~~ 156 (188)
++++|||+||+++|..+-. -...++.|-
T Consensus 3 lValSGGvDSsvla~lL~~~g~~v~~v~i~ 32 (349)
T cd01998 3 VVAMSGGVDSSVAAALLKEQGYEVIGVFMK 32 (349)
T ss_pred EEEecCCHHHHHHHHHHHHcCCcEEEEEEe
Confidence 3599999999999953322 245666654
No 120
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=88.97 E-value=0.18 Score=39.88 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=12.6
Q ss_pred eeccccCCChhhHh
Q psy7151 129 KLGLDLGLTPEVVM 142 (188)
Q Consensus 129 ~~GlSGGvDSavva 142 (188)
++++|||+||++++
T Consensus 3 ~v~~SGG~DS~~ll 16 (185)
T cd01993 3 LVALSGGKDSLVLL 16 (185)
T ss_pred EEEeCCCHHHHHHH
Confidence 45999999999998
No 121
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=88.97 E-value=0.22 Score=47.28 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=30.3
Q ss_pred cccccccccc-EEEEeecccccCCh-hhHHHHHHHHHHhhC
Q psy7151 60 LKDFHKDELR-LYGLQFHPEVDLTN-EGRTMLKNFLFDVCG 98 (188)
Q Consensus 60 i~Ai~~~~~~-i~GVQFHPE~~~t~-~G~~il~nFl~~i~~ 98 (188)
++++|..+.| +.|+|||||-...+ .+.-+|..|+....+
T Consensus 488 vEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~ 528 (533)
T COG0504 488 VEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALE 528 (533)
T ss_pred EEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHH
Confidence 6677777655 68999999997665 578899999876544
No 122
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=88.91 E-value=0.15 Score=45.88 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=18.4
Q ss_pred eccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151 130 LGLDLGLTPEVVMRHPFP--GPGLAIRVI 156 (188)
Q Consensus 130 ~GlSGGvDSavva~~~~p--~~~L~v~~~ 156 (188)
+++|||+||++++..+-. -...++-|-
T Consensus 5 ValSGGvDSsvla~lL~~~G~~V~~v~~~ 33 (346)
T PRK00143 5 VGMSGGVDSSVAAALLKEQGYEVIGVFMK 33 (346)
T ss_pred EEecCCHHHHHHHHHHHHcCCcEEEEEEe
Confidence 499999999999944322 135565554
No 123
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=88.77 E-value=0.15 Score=46.02 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=20.4
Q ss_pred eeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151 129 KLGLDLGLTPEVVMRHPFP--GPGLAIRVI 156 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~p--~~~L~v~~~ 156 (188)
++|+|||+||+|+|.++.. -.++++.|.
T Consensus 4 lValSGGvDSsv~a~lL~~~G~~V~~v~~~ 33 (352)
T TIGR00420 4 IVGLSGGVDSSVSAYLLKQQGYEVVGVFMK 33 (352)
T ss_pred EEEEeCCHHHHHHHHHHHHcCCeEEEEEEE
Confidence 3499999999999954332 257777774
No 124
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=88.57 E-value=0.23 Score=39.98 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=10.6
Q ss_pred eeccccCCChhhHh
Q psy7151 129 KLGLDLGLTPEVVM 142 (188)
Q Consensus 129 ~~GlSGGvDSavva 142 (188)
++|+|||+||.+++
T Consensus 3 ~va~SGG~DS~~Ll 16 (182)
T PF01171_consen 3 LVAVSGGKDSMALL 16 (182)
T ss_dssp EEE--SSHHHHHHH
T ss_pred EEEEcCCHHHHHHH
Confidence 45999999999998
No 125
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=88.53 E-value=0.24 Score=45.24 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=17.6
Q ss_pred eccccCCChhhHhhcCCC-C-CceEEEE
Q psy7151 130 LGLDLGLTPEVVMRHPFP-G-PGLAIRV 155 (188)
Q Consensus 130 ~GlSGGvDSavva~~~~p-~-~~L~v~~ 155 (188)
+++|||+||+|++..+.. | +..++.+
T Consensus 181 vllSGGiDS~vaa~l~~k~G~~v~av~~ 208 (394)
T PRK01565 181 LLLSGGIDSPVAGYLAMKRGVEIEAVHF 208 (394)
T ss_pred EEECCChhHHHHHHHHHHCCCEEEEEEE
Confidence 489999999999955433 1 2344554
No 126
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=87.93 E-value=0.22 Score=39.57 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=13.9
Q ss_pred eeccccCCChhhHhhcC
Q psy7151 129 KLGLDLGLTPEVVMRHP 145 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~ 145 (188)
++++|||+||++++..+
T Consensus 3 ~v~~SGG~DS~vl~~l~ 19 (185)
T cd01992 3 LVAVSGGPDSMALLHLL 19 (185)
T ss_pred EEEeCCCHHHHHHHHHH
Confidence 45999999999999433
No 127
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=87.74 E-value=0.23 Score=39.27 Aligned_cols=28 Identities=14% Similarity=-0.044 Sum_probs=17.9
Q ss_pred eeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151 129 KLGLDLGLTPEVVMRHPFP--GPGLAIRVI 156 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~p--~~~L~v~~~ 156 (188)
++++|||+||++++..+.+ .+..++.+.
T Consensus 3 lv~~SGG~DS~~~~~~~~~~~~~v~~~~~~ 32 (169)
T cd01995 3 VVLLSGGLDSTTCLAWAKKEGYEVHALSFD 32 (169)
T ss_pred EEEecCcHHHHHHHHHHHHcCCcEEEEEEE
Confidence 3499999999999943332 134445443
No 128
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=87.55 E-value=0.45 Score=45.90 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhCCC-cEEEEeeccccCCChhhHhh
Q psy7151 108 REEELIKYVKETVGNM-KVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 108 ~ie~iI~~IRe~Vg~~-kVi~~~~GlSGGvDSavva~ 143 (188)
+.+.+.+.+|.++..+ .+-+ -||||+||+++|.
T Consensus 222 lr~~L~~AV~~rl~sdvpvGv---~LSGGLDSSlIaa 255 (586)
T PTZ00077 222 IREALEAAVRKRLMGDVPFGL---FLSGGLDSSIVAA 255 (586)
T ss_pred HHHHHHHHHHHHhcCCCceEE---EecCCchHHHHHH
Confidence 3444455566655543 3444 7999999999984
No 129
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=87.44 E-value=0.32 Score=44.09 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=18.0
Q ss_pred eccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151 130 LGLDLGLTPEVVMRHPFP--GPGLAIRVI 156 (188)
Q Consensus 130 ~GlSGGvDSavva~~~~p--~~~L~v~~~ 156 (188)
+++|||+||+|++..+-. -+..++.+.
T Consensus 177 vllSGGiDS~vaa~ll~krG~~V~av~~~ 205 (371)
T TIGR00342 177 ALLSGGIDSPVAAFMMMKRGCRVVAVHFF 205 (371)
T ss_pred EEecCCchHHHHHHHHHHcCCeEEEEEEe
Confidence 599999999999943322 134555543
No 130
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=87.40 E-value=0.22 Score=40.58 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=19.2
Q ss_pred eeccccCCChhhHhhcCC---CCCceEEEEe
Q psy7151 129 KLGLDLGLTPEVVMRHPF---PGPGLAIRVI 156 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~---p~~~L~v~~~ 156 (188)
++++|||+||++++..+. .....++-+.
T Consensus 2 vva~SGG~DS~~ll~ll~~~~~~~v~~v~vd 32 (202)
T cd01990 2 AVAFSGGVDSTLLLKAAVDALGDRVLAVTAT 32 (202)
T ss_pred EEEccCCHHHHHHHHHHHHHhCCcEEEEEeC
Confidence 469999999999994332 2246666554
No 131
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=86.88 E-value=0.3 Score=37.32 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=13.1
Q ss_pred eeccccCCChhhHhh
Q psy7151 129 KLGLDLGLTPEVVMR 143 (188)
Q Consensus 129 ~~GlSGGvDSavva~ 143 (188)
+++.|||.||++++.
T Consensus 3 ~v~~SGGkDS~~ll~ 17 (173)
T cd01713 3 VVSFSGGKDSTVLLH 17 (173)
T ss_pred EEEecCChHHHHHHH
Confidence 459999999999993
No 132
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=86.63 E-value=0.68 Score=42.79 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=11.8
Q ss_pred ccccCCChhhHhh
Q psy7151 131 GLDLGLTPEVVMR 143 (188)
Q Consensus 131 GlSGGvDSavva~ 143 (188)
.+|||+||++++.
T Consensus 259 ~LSGGlDSs~iaa 271 (467)
T TIGR01536 259 LLSGGLDSSLVAA 271 (467)
T ss_pred EecCChhHHHHHH
Confidence 8999999999983
No 133
>PRK13794 hypothetical protein; Provisional
Probab=86.59 E-value=0.48 Score=44.63 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=28.3
Q ss_pred cchHHHHHHHHHHHHhC--CCcEEEEeeccccCCChhhHhh
Q psy7151 105 LKSREEELIKYVKETVG--NMKVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 105 ~~~~ie~iI~~IRe~Vg--~~kVi~~~~GlSGGvDSavva~ 143 (188)
++.+..+.++.||+.+. ...+++ +.|||.||+++..
T Consensus 228 l~~~~~~a~~~i~~~~~~~~~~v~v---s~SGGKDS~v~L~ 265 (479)
T PRK13794 228 LDKYERNSIGFIRNTAEKINKPVTV---AYSGGKDSLATLL 265 (479)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEE---EecchHHHHHHHH
Confidence 45677888999999876 345666 9999999999773
No 134
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=86.42 E-value=0.35 Score=44.41 Aligned_cols=20 Identities=25% Similarity=0.090 Sum_probs=15.3
Q ss_pred CcEEEEeeccccCCChhhHhhcC
Q psy7151 123 MKVLVRKLGLDLGLTPEVVMRHP 145 (188)
Q Consensus 123 ~kVi~~~~GlSGGvDSavva~~~ 145 (188)
.++++ ++|||+||.|+|..+
T Consensus 181 gkvlv---llSGGiDSpVAa~ll 200 (381)
T PRK08384 181 GKVVA---LLSGGIDSPVAAFLM 200 (381)
T ss_pred CcEEE---EEeCChHHHHHHHHH
Confidence 34555 999999999999433
No 135
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=85.90 E-value=0.82 Score=42.42 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=19.8
Q ss_pred HHHHHHhCC-CcEEEEeeccccCCChhhHhh
Q psy7151 114 KYVKETVGN-MKVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 114 ~~IRe~Vg~-~kVi~~~~GlSGGvDSavva~ 143 (188)
..+++.+.+ +++++ |+|||+||.++..
T Consensus 6 ~~l~~~l~~~~~ilv---avSGG~DS~~Ll~ 33 (436)
T PRK10660 6 LTLNRQLLTSRQILV---AFSGGLDSTVLLH 33 (436)
T ss_pred HHHHHhcCCCCeEEE---EecCCHHHHHHHH
Confidence 445555554 56666 9999999999884
No 136
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=85.44 E-value=0.57 Score=40.13 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=19.9
Q ss_pred eccccCCChhhHhhcCCCC--CceEEEEecC
Q psy7151 130 LGLDLGLTPEVVMRHPFPG--PGLAIRVICG 158 (188)
Q Consensus 130 ~GlSGGvDSavva~~~~p~--~~L~v~~~~~ 158 (188)
+.+|||+||++++..+... .++++-+-.+
T Consensus 6 Vl~SGG~DSt~~l~~a~~~~~~v~alt~dyg 36 (231)
T PRK11106 6 VVFSGGQDSTTCLIQALQQYDEVHCVTFDYG 36 (231)
T ss_pred EEeeCcHHHHHHHHHHHhcCCeEEEEEEEeC
Confidence 4999999999999654432 4556555433
No 137
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=85.27 E-value=0.81 Score=43.82 Aligned_cols=31 Identities=23% Similarity=0.134 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCC-cEEEEeeccccCCChhhHhh
Q psy7151 110 EELIKYVKETVGNM-KVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 110 e~iI~~IRe~Vg~~-kVi~~~~GlSGGvDSavva~ 143 (188)
+.+.+-+|.+...+ .+-+ -||||+||+++|.
T Consensus 214 ~~L~~aV~~rl~sdvpvGv---~LSGGLDSSlIaa 245 (554)
T PRK09431 214 DALEAAVKKRLMSDVPYGV---LLSGGLDSSLISA 245 (554)
T ss_pred HHHHHHHHHHhcCCCceEE---EcCCCccHHHHHH
Confidence 33344455544433 3333 6899999999983
No 138
>PRK14561 hypothetical protein; Provisional
Probab=85.26 E-value=0.31 Score=40.22 Aligned_cols=17 Identities=6% Similarity=-0.113 Sum_probs=13.9
Q ss_pred eeccccCCChhhHhhcC
Q psy7151 129 KLGLDLGLTPEVVMRHP 145 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~ 145 (188)
++++|||+||++++..+
T Consensus 4 ~ValSGG~DSslll~~l 20 (194)
T PRK14561 4 GVLFSGGKDSSLAAILL 20 (194)
T ss_pred EEEEechHHHHHHHHHH
Confidence 34999999999999543
No 139
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=85.26 E-value=0.71 Score=44.51 Aligned_cols=33 Identities=24% Similarity=0.102 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCC-cEEEEeeccccCCChhhHhh
Q psy7151 108 REEELIKYVKETVGNM-KVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 108 ~ie~iI~~IRe~Vg~~-kVi~~~~GlSGGvDSavva~ 143 (188)
+.+.+.+-++.++..+ .+-+ -+|||+||+++|.
T Consensus 210 lr~~L~~aV~~rl~sdvpvgv---~LSGGLDSSlIaa 243 (578)
T PLN02549 210 LREAFEKAVIKRLMTDVPFGV---LLSGGLDSSLVAS 243 (578)
T ss_pred HHHHHHHHHHHHhccCCceeE---eecCCccHHHHHH
Confidence 4444455566655433 3444 7999999999984
No 140
>PRK13820 argininosuccinate synthase; Provisional
Probab=83.90 E-value=0.61 Score=43.06 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=21.2
Q ss_pred cEEEEeeccccCCChhhHhhcCCC----CCceEEEEec
Q psy7151 124 KVLVRKLGLDLGLTPEVVMRHPFP----GPGLAIRVIC 157 (188)
Q Consensus 124 kVi~~~~GlSGGvDSavva~~~~p----~~~L~v~~~~ 157 (188)
+|++ ++|||+||++++..+.. +..+++.+..
T Consensus 4 kVvv---A~SGGvDSsvll~lL~e~~g~~~Viav~vd~ 38 (394)
T PRK13820 4 KVVL---AYSGGLDTSVCVPLLKEKYGYDEVITVTVDV 38 (394)
T ss_pred eEEE---EEeCcHHHHHHHHHHHHhcCCCEEEEEEEEC
Confidence 4555 99999999999954422 2466666543
No 141
>PLN00200 argininosuccinate synthase; Provisional
Probab=83.42 E-value=0.76 Score=42.61 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=20.5
Q ss_pred cEEEEeeccccCCChhhHhhcCCCC---CceEEEEe
Q psy7151 124 KVLVRKLGLDLGLTPEVVMRHPFPG---PGLAIRVI 156 (188)
Q Consensus 124 kVi~~~~GlSGGvDSavva~~~~p~---~~L~v~~~ 156 (188)
+|++ ++|||+||++++..+... .++++-+-
T Consensus 7 kVvv---a~SGGlDSsvla~~L~e~~G~eViav~id 39 (404)
T PLN00200 7 KVVL---AYSGGLDTSVILKWLRENYGCEVVCFTAD 39 (404)
T ss_pred eEEE---EEeCCHHHHHHHHHHHHhhCCeEEEEEEE
Confidence 5555 999999999999554332 35555543
No 142
>PRK04527 argininosuccinate synthase; Provisional
Probab=83.30 E-value=0.5 Score=43.77 Aligned_cols=31 Identities=6% Similarity=-0.026 Sum_probs=20.9
Q ss_pred CcEEEEeeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151 123 MKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVI 156 (188)
Q Consensus 123 ~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~ 156 (188)
++|++ ++|||+||+++++.+.. ..++++-+-
T Consensus 3 ~kVvV---A~SGGvDSSvla~~l~e~G~~Viavt~d 35 (400)
T PRK04527 3 KDIVL---AFSGGLDTSFCIPYLQERGYAVHTVFAD 35 (400)
T ss_pred CcEEE---EEcCChHHHHHHHHHHHcCCcEEEEEEE
Confidence 35555 99999999999954322 245665553
No 143
>PRK00509 argininosuccinate synthase; Provisional
Probab=83.27 E-value=0.79 Score=42.43 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=22.2
Q ss_pred CcEEEEeeccccCCChhhHhhcCCC---CCceEEEEecC
Q psy7151 123 MKVLVRKLGLDLGLTPEVVMRHPFP---GPGLAIRVICG 158 (188)
Q Consensus 123 ~kVi~~~~GlSGGvDSavva~~~~p---~~~L~v~~~~~ 158 (188)
++|++ ++|||+||++++..+.. ..++++-+-.+
T Consensus 3 ~kVvv---a~SGGlDSsvla~~l~e~lG~eViavt~d~G 38 (399)
T PRK00509 3 KKVVL---AYSGGLDTSVIIKWLKETYGCEVIAFTADVG 38 (399)
T ss_pred CeEEE---EEcCCHHHHHHHHHHHHhhCCeEEEEEEecC
Confidence 34555 99999999999954432 24666655444
No 144
>PRK08576 hypothetical protein; Provisional
Probab=82.91 E-value=0.84 Score=42.74 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh
Q psy7151 108 REEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 108 ~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~ 143 (188)
+.+...++|++.- +.++++ +.|||.||++++.
T Consensus 221 ~e~~~~~~Lr~~~-~~rVvV---afSGGKDStvLL~ 252 (438)
T PRK08576 221 FEKASIKFLRKFE-EWTVIV---PWSGGKDSTAALL 252 (438)
T ss_pred HHHHHHHHHHHcC-CCCEEE---EEcChHHHHHHHH
Confidence 3344455666654 346666 9999999999883
No 145
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=81.94 E-value=1.4 Score=42.44 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=11.5
Q ss_pred ccccCCChhhHhh
Q psy7151 131 GLDLGLTPEVVMR 143 (188)
Q Consensus 131 GlSGGvDSavva~ 143 (188)
-||||+||+++|.
T Consensus 264 ~LSGGlDSs~Iaa 276 (628)
T TIGR03108 264 FLSGGVDSSAVVA 276 (628)
T ss_pred eecCCccHHHHHH
Confidence 6999999998873
No 146
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=81.33 E-value=1.1 Score=38.65 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=17.9
Q ss_pred HHHHHHhCCCcEEEEeeccccCCChhhHh
Q psy7151 114 KYVKETVGNMKVLVRKLGLDLGLTPEVVM 142 (188)
Q Consensus 114 ~~IRe~Vg~~kVi~~~~GlSGGvDSavva 142 (188)
+|-|..+.+-++.+ +.|||+||+.++
T Consensus 52 ef~r~~id~~kiaV---A~SGG~DSsas~ 77 (255)
T COG1365 52 EFERIKIDKPKIAV---AYSGGVDSSASA 77 (255)
T ss_pred hcccCCCCCceEEE---EecCCcchHHHH
Confidence 34444444444444 999999999988
No 147
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=81.15 E-value=0.99 Score=41.64 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=18.0
Q ss_pred eeccccCCChhhHhhcCCCC--CceEEEE
Q psy7151 129 KLGLDLGLTPEVVMRHPFPG--PGLAIRV 155 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~p~--~~L~v~~ 155 (188)
++++|||+||++++..+... .++++.+
T Consensus 3 vla~SGGlDSsvll~~l~e~g~~V~av~i 31 (394)
T TIGR00032 3 VLAYSGGLDTSVCLKWLREKGYEVIAYTA 31 (394)
T ss_pred EEEEcCCHHHHHHHHHHHHcCCEEEEEEE
Confidence 45999999999999544321 3445444
No 148
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=79.88 E-value=2.7 Score=37.42 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHh
Q psy7151 107 SREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVM 142 (188)
Q Consensus 107 ~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva 142 (188)
.+..+.+..||+.+.. .+.+ ++.|||.||+|+.
T Consensus 3 ~le~esi~ilRe~~~~f~~~v---v~~SGGKDS~VlL 36 (294)
T TIGR02039 3 ALESEAIHIIREVAAEFERPV---MLYSIGKDSSVLL 36 (294)
T ss_pred HHHHHHHHHHHHHHHhcCCcE---EEEecChHHHHHH
Confidence 3456677778877663 2333 3699999999998
No 149
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=79.77 E-value=1.6 Score=37.99 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=31.8
Q ss_pred ccccccccccEEEEeecccccCC-h------------hhHHHHHHHHHHhh
Q psy7151 60 LKDFHKDELRLYGLQFHPEVDLT-N------------EGRTMLKNFLFDVC 97 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~~t-~------------~G~~il~nFl~~i~ 97 (188)
|+++-+.+.+++|.=.|||+... . +|++||+|++..++
T Consensus 208 IAGi~~~~G~vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~~ 258 (261)
T PRK01175 208 IAGITNEKGNVIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYLR 258 (261)
T ss_pred cceeECCCCCEEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHHH
Confidence 88999999999999999999632 2 78999999986543
No 150
>PRK06850 hypothetical protein; Provisional
Probab=79.69 E-value=2.8 Score=40.06 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHhCCCc--EEEEeeccccCCChhhHhh
Q psy7151 106 KSREEELIKYVKETVGNMK--VLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 106 ~~~ie~iI~~IRe~Vg~~k--Vi~~~~GlSGGvDSavva~ 143 (188)
...++.+++.|++.....+ .++ |.|||-||+++..
T Consensus 16 ~~~~~~~i~~i~~~Y~~~~~P~vV---~fSGGKDStavL~ 52 (507)
T PRK06850 16 GEPIEELIEEIQELYCADNRPWVI---GYSGGKDSTAVLQ 52 (507)
T ss_pred hHHHHHHHHHHHHHHhcCCCCeEE---eCCCCchHHHHHH
Confidence 5678889999999776433 444 9999999999883
No 151
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=79.30 E-value=2 Score=41.24 Aligned_cols=27 Identities=26% Similarity=0.149 Sum_probs=17.5
Q ss_pred HHHHHHhCCC-cEEEEeeccccCCChhhHhh
Q psy7151 114 KYVKETVGNM-KVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 114 ~~IRe~Vg~~-kVi~~~~GlSGGvDSavva~ 143 (188)
+-++.++..+ .|-+ -||||+||+++|.
T Consensus 251 ~AV~~rl~sd~pvg~---~LSGGlDSs~Iaa 278 (589)
T TIGR03104 251 LAVKRRLVADVPVGV---LLSGGLDSSLIVG 278 (589)
T ss_pred HHHHHHhhcCCceeE---EecCCccHHHHHH
Confidence 3344444333 3444 7999999999983
No 152
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=78.87 E-value=0.75 Score=38.11 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=14.0
Q ss_pred eccccCCChhhHhhcCC
Q psy7151 130 LGLDLGLTPEVVMRHPF 146 (188)
Q Consensus 130 ~GlSGGvDSavva~~~~ 146 (188)
++.|||+||++++..+.
T Consensus 4 v~~SGGkDS~~al~~a~ 20 (194)
T cd01994 4 ALISGGKDSCYALYRAL 20 (194)
T ss_pred EEecCCHHHHHHHHHHH
Confidence 48999999999995443
No 153
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=77.82 E-value=2.1 Score=41.00 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.5
Q ss_pred ccccCCChhhHhhcC
Q psy7151 131 GLDLGLTPEVVMRHP 145 (188)
Q Consensus 131 GlSGGvDSavva~~~ 145 (188)
=+||||||+++|..+
T Consensus 236 ~lSGGlDSS~Iaa~a 250 (542)
T COG0367 236 FLSGGLDSSLIAAIA 250 (542)
T ss_pred EeCCCccHHHHHHHH
Confidence 589999999999433
No 154
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=77.37 E-value=1.2 Score=37.29 Aligned_cols=20 Identities=25% Similarity=0.099 Sum_probs=14.3
Q ss_pred CcEEEEeeccccCCChhhHhhcC
Q psy7151 123 MKVLVRKLGLDLGLTPEVVMRHP 145 (188)
Q Consensus 123 ~kVi~~~~GlSGGvDSavva~~~ 145 (188)
.++++ =+|||+||.|++...
T Consensus 4 gk~l~---LlSGGiDSpVAa~lm 23 (197)
T PF02568_consen 4 GKALA---LLSGGIDSPVAAWLM 23 (197)
T ss_dssp -EEEE---E-SSCCHHHHHHHHH
T ss_pred ceEEE---EecCCccHHHHHHHH
Confidence 45666 799999999999433
No 155
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=75.70 E-value=2.6 Score=39.52 Aligned_cols=16 Identities=13% Similarity=-0.054 Sum_probs=13.4
Q ss_pred eccccCCChhhHhhcC
Q psy7151 130 LGLDLGLTPEVVMRHP 145 (188)
Q Consensus 130 ~GlSGGvDSavva~~~ 145 (188)
+.+|||+||.|++..+
T Consensus 182 vllSGGiDS~va~~~~ 197 (482)
T PRK01269 182 SLISGGFDSGVASYML 197 (482)
T ss_pred EEEcCCchHHHHHHHH
Confidence 4899999999999544
No 156
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=74.99 E-value=2.1 Score=38.19 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=15.9
Q ss_pred ccccccccccEEEEeeccccc
Q psy7151 60 LKDFHKDELRLYGLQFHPEVD 80 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~ 80 (188)
+.++...+.+++++|+|||-.
T Consensus 219 v~~~~~~~~r~~~vQgHPEYd 239 (302)
T PRK05368 219 VYLFASKDKREVFVTGHPEYD 239 (302)
T ss_pred eEEEEeCCCCEEEEECCCCCC
Confidence 445555456899999999985
No 157
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=74.72 E-value=1.1 Score=37.54 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=17.4
Q ss_pred eeccccCCChhhHhhcCCC--CCceEEEEecCC
Q psy7151 129 KLGLDLGLTPEVVMRHPFP--GPGLAIRVICGE 159 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~p--~~~L~v~~~~~~ 159 (188)
++-+|||+||++++..+.+ ....++-+--+.
T Consensus 3 vvl~SGG~DSt~~l~~~~~~~~~v~al~~~YGq 35 (209)
T PF06508_consen 3 VVLFSGGLDSTTCLYWAKKEGYEVYALTFDYGQ 35 (209)
T ss_dssp EEE--SSHHHHHHHHHHHHH-SEEEEEEEESSS
T ss_pred EEEeCCCHHHHHHHHHHHHcCCeEEEEEEECCC
Confidence 3489999999999943322 334555544333
No 158
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=74.48 E-value=1.4 Score=40.47 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=19.3
Q ss_pred eeccccCCChhhHhhcCCC--C-CceEEEEe
Q psy7151 129 KLGLDLGLTPEVVMRHPFP--G-PGLAIRVI 156 (188)
Q Consensus 129 ~~GlSGGvDSavva~~~~p--~-~~L~v~~~ 156 (188)
+++.|||+||++++..+.. + .+.++-+-
T Consensus 2 vva~SGGlDSsvll~~l~e~~~~eV~av~~d 32 (385)
T cd01999 2 VLAYSGGLDTSVILKWLKEKGGYEVIAVTAD 32 (385)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCeEEEEEEE
Confidence 4699999999999954432 1 45555543
No 159
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=72.54 E-value=4.5 Score=34.29 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=15.5
Q ss_pred cEEEEeeccccCCChhhHhhcCC
Q psy7151 124 KVLVRKLGLDLGLTPEVVMRHPF 146 (188)
Q Consensus 124 kVi~~~~GlSGGvDSavva~~~~ 146 (188)
++.+ +.|||.||+|+..++.
T Consensus 42 ~i~v---s~SGGKDS~vlL~L~~ 61 (241)
T PRK02090 42 RLAL---VSSFGAEDAVLLHLVA 61 (241)
T ss_pred CEEE---EecCCHHHHHHHHHHH
Confidence 4555 9999999999994433
No 160
>PRK08557 hypothetical protein; Provisional
Probab=69.46 E-value=3.8 Score=38.16 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=25.2
Q ss_pred cchHHHHHHHHHHHHhC---CCcEEEEeeccccCCChhhHh
Q psy7151 105 LKSREEELIKYVKETVG---NMKVLVRKLGLDLGLTPEVVM 142 (188)
Q Consensus 105 ~~~~ie~iI~~IRe~Vg---~~kVi~~~~GlSGGvDSavva 142 (188)
++....+.++.||+.+. +.+. ..+++.|||.||+++.
T Consensus 159 l~~~e~~ai~~i~~~~~~~~~~~~-~i~vsfSGGKDS~vlL 198 (417)
T PRK08557 159 IEKLEENSLSILKDYIEKYKNKGY-AINASFSGGKDSSVST 198 (417)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCc-EEEEEcCCcHHHHHHH
Confidence 34566677788888665 2221 2234999999999998
No 161
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=67.98 E-value=1.4 Score=37.01 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=13.7
Q ss_pred eccccCCChhhHhhcCC
Q psy7151 130 LGLDLGLTPEVVMRHPF 146 (188)
Q Consensus 130 ~GlSGGvDSavva~~~~ 146 (188)
+..|||+||++++..+.
T Consensus 2 vl~SGGkDS~~al~~a~ 18 (218)
T TIGR03679 2 ALYSGGKDSNYALYKAL 18 (218)
T ss_pred eeecCcHHHHHHHHHHH
Confidence 47899999999995443
No 162
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=63.77 E-value=2.6 Score=29.28 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=13.0
Q ss_pred eeccccCCChhhHhh
Q psy7151 129 KLGLDLGLTPEVVMR 143 (188)
Q Consensus 129 ~~GlSGGvDSavva~ 143 (188)
++++|||.||+++..
T Consensus 2 lv~~sgg~dS~~~l~ 16 (86)
T cd01984 2 LVALSGGLDSSVLLH 16 (86)
T ss_pred EEEeeCCHHHHHHHH
Confidence 458999999999984
No 163
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=61.22 E-value=6.6 Score=36.96 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=19.9
Q ss_pred HHHHHHHhC-CCc-EEEEeeccccCCChhhHh
Q psy7151 113 IKYVKETVG-NMK-VLVRKLGLDLGLTPEVVM 142 (188)
Q Consensus 113 I~~IRe~Vg-~~k-Vi~~~~GlSGGvDSavva 142 (188)
++.||+... +.. .+ +|-|||-||+++.
T Consensus 2 ~~~i~~~y~~~~~p~v---V~fSGGKDSta~L 30 (447)
T TIGR03183 2 IEEIQELYLSDDIPWV---VGYSGGKDSTAVL 30 (447)
T ss_pred hHHHHHHHHhcCCceE---EEeCCCHHHHHHH
Confidence 567777665 333 34 4999999999998
No 164
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=60.26 E-value=5.7 Score=34.12 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=13.7
Q ss_pred ccccCCChhhHhhcCCC
Q psy7151 131 GLDLGLTPEVVMRHPFP 147 (188)
Q Consensus 131 GlSGGvDSavva~~~~p 147 (188)
-+|||.||++++..+-+
T Consensus 8 l~SGG~DStt~l~~a~~ 24 (222)
T COG0603 8 LLSGGLDSTTCLAWAKK 24 (222)
T ss_pred EccCChhHHHHHHHHHh
Confidence 79999999999944443
No 165
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=57.85 E-value=6.9 Score=33.16 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=27.3
Q ss_pred ccccccccccEEEEeecccccCCh----------hhHHHHHHH
Q psy7151 60 LKDFHKDELRLYGLQFHPEVDLTN----------EGRTMLKNF 92 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~~t~----------~G~~il~nF 92 (188)
|+++-+.+.+++|.=.|||+.... .|++||+|.
T Consensus 195 iAgi~~~~GrvlglMphPer~~~~~q~~~~~~~~~~~~~F~~~ 237 (238)
T cd01740 195 IAGICNEDGRVLGMMPHPERAVEPWQWERLLGGSDGLKLFRNA 237 (238)
T ss_pred ceEEEcCCCCEEEEcCChHHcccccccccccCCCccHHHHhhc
Confidence 889999999999999999997433 578888763
No 166
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=55.99 E-value=4.2 Score=31.45 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=10.7
Q ss_pred eeccccCCChhhHh
Q psy7151 129 KLGLDLGLTPEVVM 142 (188)
Q Consensus 129 ~~GlSGGvDSavva 142 (188)
+++.|||.||+++.
T Consensus 3 ~vs~SGGKDS~v~l 16 (174)
T PF01507_consen 3 VVSFSGGKDSTVML 16 (174)
T ss_dssp EEE--SSHHHHHHH
T ss_pred EEEecCCHHHHHHH
Confidence 45999999999998
No 167
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=54.68 E-value=19 Score=32.41 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHh
Q psy7151 105 LKSREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVM 142 (188)
Q Consensus 105 ~~~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva 142 (188)
++....+.+.-||+.+.. ++.. +..|||.||+|+.
T Consensus 19 L~~le~esi~ilrea~~~f~~~~---v~~SgGKDS~VlL 54 (312)
T PRK12563 19 LDRLEAESIHILREVVAECSKPV---MLYSIGKDSVVML 54 (312)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcE---EEecCChHHHHHH
Confidence 456667777888887653 2333 4899999999998
No 168
>PRK05370 argininosuccinate synthase; Validated
Probab=54.53 E-value=12 Score=35.26 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=28.3
Q ss_pred HHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCCchh
Q psy7151 116 VKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERY 162 (188)
Q Consensus 116 IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~~~~ 162 (188)
|++..+.++|++ +-|||.||+++.+.+-.. ..-|...+.+.++
T Consensus 5 ~~~l~~~~KVvL---AYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ 47 (447)
T PRK05370 5 LKHLPVGQRVGI---AFSGGLDTSAALLWMRQK-GAVPYAYTANLGQ 47 (447)
T ss_pred hhhCCCCCEEEE---EecCCchHHHHHHHHHhc-CCeEEEEEEECCC
Confidence 455556678877 999999999999644332 3445444555544
No 169
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=51.60 E-value=16 Score=31.63 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=31.7
Q ss_pred ccccccccccEEEEeecccccC-----ChhhHHHHHHHHHHh
Q psy7151 60 LKDFHKDELRLYGLQFHPEVDL-----TNEGRTMLKNFLFDV 96 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~~-----t~~G~~il~nFl~~i 96 (188)
|+++-+.+.++.|.==|||+.. +++|+.||++.+..+
T Consensus 189 IaGI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~~ 230 (231)
T COG0047 189 IAGITNEDGNVLGMMPHPERASESLLGGEDGLRLFRSARKYL 230 (231)
T ss_pred ceeEEcCCCCEEEecCCchhhhhcccCCchHHHHHHHHHHhh
Confidence 8899998899999999999963 567899999988653
No 170
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=49.65 E-value=12 Score=31.39 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=21.3
Q ss_pred cccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151 67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFDV 96 (188)
Q Consensus 67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~~i 96 (188)
+.++.+.-||||- |++|..+=+.|++.+
T Consensus 159 qgn~latsFHPEL--T~D~~r~H~yFl~~v 186 (188)
T PF01174_consen 159 QGNILATSFHPEL--TDDDTRIHEYFLEMV 186 (188)
T ss_dssp ETTEEEESS-GGG--SSTHCHHHHHHHHHH
T ss_pred ecCEEEEEeCCcc--cCchhHHHHHHHHHh
Confidence 4699999999998 455667888888765
No 171
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=48.81 E-value=17 Score=29.88 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCcEEEEeeccccCCChhhHh
Q psy7151 111 ELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM 142 (188)
Q Consensus 111 ~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva 142 (188)
++++|.-++.++ ++.. -.|||.||+|+.
T Consensus 3 ~~l~~a~~~~~~-~~~~---s~SgGKDS~Vll 30 (212)
T TIGR00434 3 EIIAWAYVTFGG-HLVY---STSFGIQGAVLL 30 (212)
T ss_pred HHHHHHHHhcCC-CEEE---EecCCHHHHHHH
Confidence 456676666663 4444 789999999988
No 172
>KOG2387|consensus
Probab=48.05 E-value=7.4 Score=37.11 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=14.9
Q ss_pred ccccccccc-EEEEeecccccCC
Q psy7151 61 KDFHKDELR-LYGLQFHPEVDLT 82 (188)
Q Consensus 61 ~Ai~~~~~~-i~GVQFHPE~~~t 82 (188)
+-++-.+.| +.|+|||||-..-
T Consensus 510 eI~El~~HP~fVg~QfHPE~~sr 532 (585)
T KOG2387|consen 510 EIIELESHPFFVGVQFHPEFKSR 532 (585)
T ss_pred EEEEcCCCCceeeeccCHHHhcC
Confidence 344544444 6899999998643
No 173
>KOG0571|consensus
Probab=44.98 E-value=23 Score=33.77 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh
Q psy7151 108 REEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM 142 (188)
Q Consensus 108 ~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva 142 (188)
+.+.+++-.|+.+=.+.-.| +=||||+||+++|
T Consensus 210 ~r~~~~~aV~KRLM~d~p~G--vLLSGGLDSSLvA 242 (543)
T KOG0571|consen 210 LRHTLEKAVRKRLMTDVPFG--VLLSGGLDSSLVA 242 (543)
T ss_pred HHHHHHHHHHHHhhccCcee--EEeeCCchHHHHH
Confidence 33445555555544333222 1369999999999
No 174
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=44.21 E-value=36 Score=26.31 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=37.5
Q ss_pred eeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccc--eecccccccccccccEEEEeeccccc
Q psy7151 12 LLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQG--KVIEPLKDFHKDELRLYGLQFHPEVD 80 (188)
Q Consensus 12 ~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s--~vi~pi~Ai~~~~~~i~GVQFHPE~~ 80 (188)
.-+||++| ...|...|.||-. ..|. -+...+...+.+.. .+..|+.-++..+..+||+-||.+.-
T Consensus 44 ~~iEG~LF--v~~r~~~p~~~~~-vlNR-~~~~n~~~~i~~~~~~e~~~~~l~~r~~~~~I~GiWf~~~~d 110 (122)
T PF06058_consen 44 TDIEGTLF--VYKRSSSPRYGLI-VLNR-RSTENFVEPITPDLDFELQDPYLIYRNDNQEIYGIWFYDDED 110 (122)
T ss_dssp EEEEEEEE--EEEEETTS-ECEE-EEES-SSS--EEEEE-SGGGEEEETTEEEEEETTTEEEEEEESSHHH
T ss_pred cCcEeeEE--EEEeecccceEEE-EecC-CCCCceeeecCCCcEEEEeCCEEEEEcCCceEEEEEEEeHHH
Confidence 45899999 6777888877622 2221 12222344444332 22345556666667999999998773
No 175
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=44.16 E-value=9.8 Score=32.44 Aligned_cols=14 Identities=7% Similarity=-0.031 Sum_probs=12.3
Q ss_pred eccccCCChhhHhh
Q psy7151 130 LGLDLGLTPEVVMR 143 (188)
Q Consensus 130 ~GlSGGvDSavva~ 143 (188)
+..|||.||++++.
T Consensus 5 vl~SGGKDS~lAl~ 18 (222)
T TIGR00289 5 VLYSGGKDSILALY 18 (222)
T ss_pred EEecCcHHHHHHHH
Confidence 38999999999994
No 176
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=38.49 E-value=44 Score=28.22 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=18.8
Q ss_pred ccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151 66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFD 95 (188)
Q Consensus 66 ~~~~i~GVQFHPE~~~t~~G~~il~nFl~~ 95 (188)
++.++.|.-||||-+.+. .+-+.|+..
T Consensus 163 ~qgn~LatsFHPELT~D~---r~Heyf~~~ 189 (194)
T COG0311 163 KQGNILATSFHPELTDDT---RLHEYFLDM 189 (194)
T ss_pred EeCCEEEEecCccccCCc---cHHHHHHHH
Confidence 346999999999997554 444445543
No 177
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=37.72 E-value=39 Score=28.49 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=17.5
Q ss_pred EeeccccCCChhhHh-hcCCCCCceEEE
Q psy7151 128 RKLGLDLGLTPEVVM-RHPFPGPGLAIR 154 (188)
Q Consensus 128 ~~~GlSGGvDSavva-~~~~p~~~L~v~ 154 (188)
.+.|+..|||++.-. .+...++.++|.
T Consensus 77 IVSG~A~GiD~~ah~~al~~~g~tIaVl 104 (220)
T TIGR00732 77 IVSGLALGIDGIAHKAALKVNGRTIAVL 104 (220)
T ss_pred EEcCchhhHHHHHHHHHHHcCCCEEEEE
Confidence 456999999997655 233345666664
No 178
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=35.30 E-value=25 Score=32.60 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=12.0
Q ss_pred ccccCCChhhHhhc
Q psy7151 131 GLDLGLTPEVVMRH 144 (188)
Q Consensus 131 GlSGGvDSavva~~ 144 (188)
=+|||+||-|++..
T Consensus 181 LlSGGIDSPVA~~l 194 (383)
T COG0301 181 LLSGGIDSPVAAWL 194 (383)
T ss_pred EEeCCCChHHHHHH
Confidence 48999999999943
No 179
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=32.57 E-value=49 Score=28.80 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=26.7
Q ss_pred ccccccccccEEEEeecccccCC--------------hhhHHHHHHHHHH
Q psy7151 60 LKDFHKDELRLYGLQFHPEVDLT--------------NEGRTMLKNFLFD 95 (188)
Q Consensus 60 i~Ai~~~~~~i~GVQFHPE~~~t--------------~~G~~il~nFl~~ 95 (188)
|+++.+.+.+++|.=.|||+... ..|++||+|-+..
T Consensus 209 IAGics~~GrvlglMpHPEr~~~~~~~~~~p~~~~~~s~~~~~F~n~~~w 258 (259)
T PF13507_consen 209 IAGICSPDGRVLGLMPHPERAFEPWQWPHWPREKWQESPWLRIFQNAVEW 258 (259)
T ss_dssp EEEEE-TTSSEEEESSBCCGTTCCCCSS-S--TT--B-TTHHHHHHHHH-
T ss_pred eeEEEcCCCCEEEEcCChHHhCchhhcCCCCccccCCChHHHHHHHHhhc
Confidence 88999999999999999999721 2367788776643
No 180
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=30.93 E-value=39 Score=28.26 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=26.2
Q ss_pred CChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcC-CCCCceEEE
Q psy7151 81 LTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHP-FPGPGLAIR 154 (188)
Q Consensus 81 ~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~-~p~~~L~v~ 154 (188)
.|++|.+..++|...++... . ..+.|+.-|+|++..-.+. ..++.++|.
T Consensus 55 ~s~~g~~~a~~l~~~l~~~g------------------------~-~vvSGlA~GiD~~ah~~al~~~g~tIaVl 104 (212)
T PF02481_consen 55 PSEYGLKFAKKLARELAKAG------------------------I-VVVSGLAKGIDAAAHRGALDAGGPTIAVL 104 (212)
T ss_dssp --HHHHHHHHHHHHHHHHHT--------------------------EEEE---TTHHHHHHHHHTTT---EEEE-
T ss_pred CCHHHHHHHHHHHHHHhhCC------------------------E-EEEcCCCCCHHHHHHHHHHHccCCEEEEE
Confidence 36778888777776655321 1 1456999999998777433 347777774
No 181
>KOG0573|consensus
Probab=30.78 E-value=24 Score=33.63 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=13.1
Q ss_pred ccccCCChhhHhhcCC
Q psy7151 131 GLDLGLTPEVVMRHPF 146 (188)
Q Consensus 131 GlSGGvDSavva~~~~ 146 (188)
=.||||||+|+|..++
T Consensus 256 lfSGGvDs~vvA~l~h 271 (520)
T KOG0573|consen 256 LFSGGVDSTVVAVLAH 271 (520)
T ss_pred EecCCchHHHHHHHHH
Confidence 4799999999995443
No 182
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=30.49 E-value=86 Score=28.25 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=33.5
Q ss_pred CChhhHHHHHHHHHHhh-----CCCCCcccc-hHHHHHHHHHHHHhCCCcEEEEeeccccC-CChhhHhhcCC
Q psy7151 81 LTNEGRTMLKNFLFDVC-----GLTGNFTLK-SREEELIKYVKETVGNMKVLVRKLGLDLG-LTPEVVMRHPF 146 (188)
Q Consensus 81 ~t~~G~~il~nFl~~i~-----~~~~~W~~~-~~ie~iI~~IRe~Vg~~kVi~~~~GlSGG-vDSavva~~~~ 146 (188)
|...|..|+-.+|..-- =+.++|+-. +| .+.|.=+.-. |+|+| +||.|....+.
T Consensus 30 HPsFG~AiIgR~Le~~GyrVgIiaQPdw~~~~df---------~~lG~PrLff---~VsaGn~DSMV~hYTa~ 90 (302)
T PF08497_consen 30 HPSFGAAIIGRVLEAHGYRVGIIAQPDWRSPEDF---------KRLGRPRLFF---GVSAGNMDSMVNHYTAS 90 (302)
T ss_pred CcchhHHHHHHHHHHcCCeEEEEeCCCCCChHHH---------HHhCCCcEEE---EEccccHHHHHHhhccc
Confidence 34568888888886432 166888543 33 2345444444 77777 99999884433
No 183
>smart00427 H2B Histone H2B.
Probab=30.41 E-value=41 Score=25.01 Aligned_cols=24 Identities=21% Similarity=0.634 Sum_probs=20.9
Q ss_pred eecccccCChhhHHHHHHHHHHhh
Q psy7151 74 QFHPEVDLTNEGRTMLKNFLFDVC 97 (188)
Q Consensus 74 QFHPE~~~t~~G~~il~nFl~~i~ 97 (188)
|-||+...+.....|+..|+..+.
T Consensus 13 qVhpd~giS~kam~imnSfvnDif 36 (89)
T smart00427 13 QVHPDTGISSKAMSIMNSFVNDIF 36 (89)
T ss_pred HhCCCccccHHHHHHHHHHHHHHH
Confidence 789999999999999999987653
No 184
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=30.06 E-value=22 Score=33.01 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=10.6
Q ss_pred eeccccCCChhhHhh
Q psy7151 129 KLGLDLGLTPEVVMR 143 (188)
Q Consensus 129 ~~GlSGGvDSavva~ 143 (188)
|++-|||+||+++-+
T Consensus 1 VLAySGGLDTS~~l~ 15 (388)
T PF00764_consen 1 VLAYSGGLDTSVILK 15 (388)
T ss_dssp EEE--SSHHHHHHHH
T ss_pred CeeeCCChHHHHHHH
Confidence 457899999999873
No 185
>KOG2303|consensus
Probab=29.92 E-value=42 Score=32.68 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=28.2
Q ss_pred CcccchHHHHHH----HHHHHHhCCCcEEEEeeccccCCChhhHh
Q psy7151 102 NFTLKSREEELI----KYVKETVGNMKVLVRKLGLDLGLTPEVVM 142 (188)
Q Consensus 102 ~W~~~~~ie~iI----~~IRe~Vg~~kVi~~~~GlSGGvDSavva 142 (188)
.|.+-+=.|++. -|+=++..-.+.-|..+-||||+||+-+|
T Consensus 322 e~~~hsPeeEia~GPacwlWdyLRRs~~aGfflPLSGG~DSsatA 366 (706)
T KOG2303|consen 322 EWKYHSPEEEIALGPACWLWDYLRRSGQAGFFLPLSGGVDSSATA 366 (706)
T ss_pred ccccCCcHHHhccCchHHHHHHHHhcCCCceEEecCCCccchHHH
Confidence 355555555553 56666666555555666999999999888
No 186
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=29.81 E-value=52 Score=27.79 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeeccccCCChhhHh
Q psy7151 110 EELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM 142 (188)
Q Consensus 110 e~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva 142 (188)
.++++|+-++.++ +++. .-|||.||+|+-
T Consensus 14 ~~~l~~~~~~~~~-~~~~---s~S~Gkds~VlL 42 (226)
T TIGR02057 14 QEIIAWSIVTFPH-GLVQ---TSAFGIQALVTL 42 (226)
T ss_pred HHHHHHHHHHcCC-CEEE---EecCCHHHHHHH
Confidence 4456666666543 4544 789999999988
No 187
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=29.06 E-value=57 Score=28.13 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh
Q psy7151 110 EELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 110 e~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~ 143 (188)
+.++.|..+..++. .++.-|||.||+|+..
T Consensus 28 ~~i~~~~~~~~~~~----~~~~~S~Gkds~V~l~ 57 (261)
T COG0175 28 IEILRWAAEEFSNP----VVVSFSGGKDSTVLLH 57 (261)
T ss_pred HHHHHHHHHHcCCC----eEEEecCchhHHHHHH
Confidence 56666677777665 2347999999999883
No 188
>KOG4720|consensus
Probab=28.52 E-value=1.1e+02 Score=28.25 Aligned_cols=76 Identities=11% Similarity=-0.052 Sum_probs=51.0
Q ss_pred EeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCC--CCCc
Q psy7151 73 LQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPF--PGPG 150 (188)
Q Consensus 73 VQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~--p~~~ 150 (188)
|++-||-.+-+..+ ..+-.+.++|++.+. ..-+.|+|+-+-+.+.-.. ....
T Consensus 56 v~~~~~~d~~~ga~-------eLlk~Lrp~W~~~~v-------------------~~~~fs~gitNkL~~~~vg~~~e~~ 109 (391)
T KOG4720|consen 56 VISVEETDCIPGAL-------ELLKKLRPHWKPPEV-------------------TFKRFSDGITNKLFSCYVGENMEDH 109 (391)
T ss_pred EEecChhhhhhhHH-------HHHHHhcccCCccce-------------------eeeeeccchhHHHHHhhccccccee
Confidence 36666664444444 444567899999987 6668899998888874222 2345
Q ss_pred eEEEEecCCchhhhhhhhhhhhHH
Q psy7151 151 LAIRVICGEERYIEKDYSETQVLV 174 (188)
Q Consensus 151 L~v~~~~~~~~~~~~~~~~~~~~~ 174 (188)
..+|+.++.+..+.+-+.|...+.
T Consensus 110 v~vrvyg~~te~vIdre~Ev~afk 133 (391)
T KOG4720|consen 110 VLVRVYGHNTELVIDRENEVIAFK 133 (391)
T ss_pred EEEEeccCCCceeeccHHHHHHHH
Confidence 678889888777766666655543
No 189
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=27.88 E-value=2.3e+02 Score=22.90 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh------hcCCCCCceE-EEEe
Q psy7151 107 SREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM------RHPFPGPGLA-IRVI 156 (188)
Q Consensus 107 ~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva------~~~~p~~~L~-v~~~ 156 (188)
+..++..+.||+++++...+..+.|+.||--|-..+ + -++...++ +.+|
T Consensus 67 ~~~~~~~~~ir~~le~~d~~~i~~slgGGTGsG~~~~i~~~~~-~~~~~~~~~~v~P 122 (192)
T smart00864 67 EAAEESLDEIREELEGADGVFITAGMGGGTGTGAAPVIAEIAK-EYGILTVAVVTKP 122 (192)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeccCCCCccccHHHHHHHHHH-HcCCcEEEEEEEe
Confidence 466777888999998877776777999987776655 4 45544455 3444
No 190
>PLN00158 histone H2B; Provisional
Probab=27.85 E-value=47 Score=25.86 Aligned_cols=24 Identities=21% Similarity=0.648 Sum_probs=20.7
Q ss_pred eecccccCChhhHHHHHHHHHHhh
Q psy7151 74 QFHPEVDLTNEGRTMLKNFLFDVC 97 (188)
Q Consensus 74 QFHPE~~~t~~G~~il~nFl~~i~ 97 (188)
|-||+...+.....|+..|+.++.
T Consensus 39 QVhPd~gIS~kaM~ImnSfvnDif 62 (116)
T PLN00158 39 QVHPDTGISSKAMSIMNSFINDIF 62 (116)
T ss_pred HhCCCCCccHHHHHHHHHHHHHHH
Confidence 889999999999999998887653
No 191
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=27.73 E-value=76 Score=26.20 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=36.3
Q ss_pred CCCCCcccch------HHHHHHHHHHHHh---CCCcEEEEeeccccCCChhhHh------hcCCCCC-ceE
Q psy7151 98 GLTGNFTLKS------REEELIKYVKETV---GNMKVLVRKLGLDLGLTPEVVM------RHPFPGP-GLA 152 (188)
Q Consensus 98 ~~~~~W~~~~------~ie~iI~~IRe~V---g~~kVi~~~~GlSGGvDSavva------~~~~p~~-~L~ 152 (188)
++..||.... ..++..+.||+.+ ..-..+..+.|+.||-=|-... +.-+|+. .++
T Consensus 90 g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~ 160 (216)
T PF00091_consen 90 GSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIIS 160 (216)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEE
T ss_pred cccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceee
Confidence 5677776654 5677888899999 5555666677999995553333 5556543 344
No 192
>PTZ00463 histone H2B; Provisional
Probab=26.40 E-value=54 Score=25.59 Aligned_cols=23 Identities=26% Similarity=0.681 Sum_probs=20.0
Q ss_pred eecccccCChhhHHHHHHHHHHh
Q psy7151 74 QFHPEVDLTNEGRTMLKNFLFDV 96 (188)
Q Consensus 74 QFHPE~~~t~~G~~il~nFl~~i 96 (188)
|-||+...+.....|+..|+..+
T Consensus 40 qVhPd~gIS~kaM~ImnSfvnDi 62 (117)
T PTZ00463 40 QVHPDTGISRKSMNIMNSFLVDT 62 (117)
T ss_pred hhCCCCCccHHHHHHHHHHHHHH
Confidence 88999999999999988888654
No 193
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=26.15 E-value=86 Score=27.71 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=32.8
Q ss_pred cEEEEeecccccCChhhHHHHHHHHHHhhCCCCCccc
Q psy7151 69 RLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTL 105 (188)
Q Consensus 69 ~i~GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~ 105 (188)
+++.+.+||..+..+.=..+|+.||..|...+.-|-.
T Consensus 246 ~~~~i~lHp~i~G~p~R~~~L~~~l~~i~~~~~VW~a 282 (297)
T TIGR03212 246 KMMSIGLHCRLVGRPGRIAALQRFLDYVQSHDKVWVA 282 (297)
T ss_pred ceEEEecCccccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5999999999998888899999999999988777743
No 194
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=26.13 E-value=2e+02 Score=22.83 Aligned_cols=55 Identities=4% Similarity=-0.122 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHhhCCCCCcc-----cchHHHHHHHHHHHHhCCCcEEEEeec--cccCCCh
Q psy7151 84 EGRTMLKNFLFDVCGLTGNFT-----LKSREEELIKYVKETVGNMKVLVRKLG--LDLGLTP 138 (188)
Q Consensus 84 ~G~~il~nFl~~i~~~~~~W~-----~~~~ie~iI~~IRe~Vg~~kVi~~~~G--lSGGvDS 138 (188)
+-+..+.+|...+.+.+-+-. ...|-..+-+.+.++-.+.+++.++.+ ++|+.|=
T Consensus 51 DmK~Tld~F~~Q~~~~~lte~q~e~lt~rF~~aL~~~L~~yq~~H~~VILVspAVv~GA~DI 112 (128)
T PRK13717 51 NMKQTVDAFFDSASQKQLSEAQSKALSARFNTALEASLQAWQQKHHAVILVSPAVVQGAPDI 112 (128)
T ss_pred ehHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEechhhhcCCCCC
Confidence 347788999999876555411 113555566778888888888877763 7777773
No 195
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=24.93 E-value=99 Score=27.98 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHhCCCcEEEEeec------cccCCC
Q psy7151 107 SREEELIKYVKETVGNMKVLVRKLG------LDLGLT 137 (188)
Q Consensus 107 ~~ie~iI~~IRe~Vg~~kVi~~~~G------lSGGvD 137 (188)
.|.-++++.||+.+++.-+..++.+ ..+|.+
T Consensus 210 Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~ 246 (362)
T PRK10605 210 RLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPN 246 (362)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCC
Confidence 4888999999999997755444432 345665
No 196
>PF01606 Arteri_env: Arterivirus envelope protein; InterPro: IPR002556 This family consists of viral envelope proteins from the Arteriviridae; this includes Porcine reproductive and respiratory syndrome virus (PRRSV) envelope protein GP3 and Lactate dehydrogenase-elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=24.28 E-value=14 Score=30.94 Aligned_cols=12 Identities=50% Similarity=0.758 Sum_probs=10.1
Q ss_pred cEEEEeeccccc
Q psy7151 69 RLYGLQFHPEVD 80 (188)
Q Consensus 69 ~i~GVQFHPE~~ 80 (188)
..|+.|||||..
T Consensus 118 fsyaaqfhPEiF 129 (214)
T PF01606_consen 118 FSYAAQFHPEIF 129 (214)
T ss_pred HHHHHhhChhhh
Confidence 568899999985
No 197
>PLN02411 12-oxophytodienoate reductase
Probab=23.24 E-value=95 Score=28.43 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCCCCC-c--ccc---hHHHHHHHHHHHHhCCCcEEEEee
Q psy7151 88 MLKNFLFDVCGLTGN-F--TLK---SREEELIKYVKETVGNMKVLVRKL 130 (188)
Q Consensus 88 il~nFl~~i~~~~~~-W--~~~---~~ie~iI~~IRe~Vg~~kVi~~~~ 130 (188)
||..||+-...-..| | +++ .|.-++++.||+.++++.+..++.
T Consensus 191 Ll~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS 239 (391)
T PLN02411 191 LIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVS 239 (391)
T ss_pred HHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 445555544443333 3 333 488899999999999875555444
No 198
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=22.64 E-value=40 Score=28.23 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=10.4
Q ss_pred cccCCChhhHh
Q psy7151 132 LDLGLTPEVVM 142 (188)
Q Consensus 132 lSGGvDSavva 142 (188)
-|||.||+++|
T Consensus 7 fSGGKDSSLaA 17 (198)
T COG2117 7 FSGGKDSSLAA 17 (198)
T ss_pred ecCCCchhHHH
Confidence 59999999999
No 199
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=22.44 E-value=1.1e+02 Score=28.52 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHh-------hcCCCCCceEEEEecC
Q psy7151 105 LKSREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVM-------RHPFPGPGLAIRVICG 158 (188)
Q Consensus 105 ~~~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva-------~~~~p~~~L~v~~~~~ 158 (188)
-+++.|..++.|+=...+ ..|.+ .-|||.||.|.- +.-.+++ ++|-.+.-
T Consensus 9 ~~nV~eA~~eRl~~if~~f~~VcV---SFSGGKDS~lmLhL~~~~ar~~~~~~-i~VlfiD~ 66 (407)
T COG3969 9 DENVLEAAIERLEWIFNTFPRVCV---SFSGGKDSGLMLHLVAEVARENGRDK-ISVLFIDW 66 (407)
T ss_pred cchHHHHHHHHHHHHHhcCCeEEE---EecCCCchhHHHHHHHHHHHHhCCCc-eEEEEEcc
Confidence 345666666666655554 35555 999999999854 5555555 66665543
No 200
>KOG0894|consensus
Probab=22.36 E-value=46 Score=28.85 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=39.2
Q ss_pred CCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCCchhhhhhhhh
Q psy7151 100 TGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSE 169 (188)
Q Consensus 100 ~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~~~~~~~~~~~ 169 (188)
.+.|+.+.+..-+..++-+.- -..|+|-++..-+.-+.-..|+.. | .+..-++.|+|
T Consensus 99 NP~WsVStILtGLlSFM~e~~----------pTtGSI~tS~~~kr~lA~~SlaFN--~-kn~~F~~lFPE 155 (244)
T KOG0894|consen 99 NPGWSVSTILTGLLSFMTEDS----------PTTGSIETSDQDKRMLAKSSLAFN--L-KNPKFCELFPE 155 (244)
T ss_pred CCcccHHHHHHHHHHHHhcCC----------CccCcccccHHHHHHHHHhhhhhc--c-CChHHHHHhHH
Confidence 577888888888888877644 345778888777554444556665 2 34666778877
No 201
>COG1158 Rho Transcription termination factor [Transcription]
Probab=22.19 E-value=1.2e+02 Score=28.42 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhCCCc-EEEEe----------------ec--cccCCChhhHh
Q psy7151 107 SREEELIKYVKETVGNMK-VLVRK----------------LG--LDLGLTPEVVM 142 (188)
Q Consensus 107 ~~ie~iI~~IRe~Vg~~k-Vi~~~----------------~G--lSGGvDSavva 142 (188)
++.|-.++.-|..|+.++ |+.++ .| ||||||++-+-
T Consensus 243 qVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsGGvD~nAL~ 297 (422)
T COG1158 243 QVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALH 297 (422)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccCCCCCCeecCCcChhhhc
Confidence 377778888999998654 66555 45 89999998766
No 202
>PRK10736 hypothetical protein; Provisional
Probab=21.84 E-value=1.8e+02 Score=26.93 Aligned_cols=55 Identities=15% Similarity=-0.039 Sum_probs=34.3
Q ss_pred cCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh-hcCCCCCceEEEEecC
Q psy7151 80 DLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM-RHPFPGPGLAIRVICG 158 (188)
Q Consensus 80 ~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva-~~~~p~~~L~v~~~~~ 158 (188)
..|++|..+.++|...++...-. .++|+.-|||++-=. .+-..++.++|.-.+-
T Consensus 117 ~~s~yg~~~~~~l~~~la~~g~~-------------------------IVSGlA~GiD~~AH~~aL~~~g~TIaVlg~Gl 171 (374)
T PRK10736 117 AHSWYGERWGRLFCEELAKNGLT-------------------------ITSGLARGIDGVAHRAALQAGGKTIAVLGNGL 171 (374)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCE-------------------------EECcchhhHHHHHHHHHHHcCCCEEEEECCCC
Confidence 45788999999988877653321 455777788887322 2233456677654443
Q ss_pred C
Q psy7151 159 E 159 (188)
Q Consensus 159 ~ 159 (188)
+
T Consensus 172 d 172 (374)
T PRK10736 172 E 172 (374)
T ss_pred C
Confidence 3
No 203
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=21.10 E-value=1.3e+02 Score=29.67 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=36.0
Q ss_pred CCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCCchhhhh
Q psy7151 99 LTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEK 165 (188)
Q Consensus 99 ~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~~~~~~~ 165 (188)
...-.|++. +++++|||.....+-|.+ |-.+..+..++..++.+.. .|-.|+..+|+
T Consensus 497 ~~Ef~npd~--~eL~~WIk~nt~~~AvFA-------GsM~lma~vkL~T~r~ivn-HPhYEd~~LR~ 553 (642)
T PF10034_consen 497 LGEFYNPDT--EELMEWIKSNTPPDAVFA-------GSMPLMASVKLCTGRPIVN-HPHYEDADLRE 553 (642)
T ss_pred ccCCCCcCH--HHHHHHHHhcCCCCCeec-------cCcchHHHHHHhcCCcccc-CcccCCHHHHH
Confidence 344456777 999999999999888887 4445555544444444433 35555544443
No 204
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=20.57 E-value=1.5e+02 Score=21.29 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh
Q psy7151 86 RTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR 143 (188)
Q Consensus 86 ~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~ 143 (188)
..++--++..+||++.--.+..+.+...+|+|+.+ |+.-|++|.-+=+
T Consensus 23 ~iL~i~~~a~l~G~~~~~~i~~~~~~~~~~l~~~l----------~~~~~~PS~~Ti~ 70 (90)
T PF13808_consen 23 DILLIALCAVLCGADSWREIAEWARAHEEWLRKRL----------GLPRGVPSHDTIR 70 (90)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhHHHHHHhc----------CCCCCCCcHHHHH
Confidence 45666777889999988889999999999999987 5556677765553
No 205
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=20.45 E-value=3.2e+02 Score=22.31 Aligned_cols=47 Identities=21% Similarity=0.168 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCcEEEEeeccccCCChhhHh-----hcCCCCCceEEEEecCC
Q psy7151 112 LIKYVKETVGNMKVLVRKLGLDLGLTPEVVM-----RHPFPGPGLAIRVICGE 159 (188)
Q Consensus 112 iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva-----~~~~p~~~L~v~~~~~~ 159 (188)
+-+.|++.+.+ ++--.+.|...|+|.--+. +.-+|+=.|++.+|+.+
T Consensus 31 L~~~i~~lie~-G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf~~ 82 (177)
T PF06908_consen 31 LKKQIIELIEE-GVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPFEN 82 (177)
T ss_dssp HHHHHHHHHTT-T--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESSB-
T ss_pred HHHHHHHHHHC-CCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcccc
Confidence 34456666654 4444455999999964443 66788888999999844
Done!