RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7151
(188 letters)
>gnl|CDD|238955 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase.
It contains two subdomains; the ATP pyrophosphatase
domain which closes to the N-termial and the
dimerization domain at C-terminal end. The ATP-PPase is
a twisted, five-stranded parallel beta-sheet sandwiched
between helical layers. It has a signature
nucleotide-binding motif, or P-loop, at the end of the
first-beta strand.The dimerization domain formed by the
C-terminal 115 amino acid for prokaryotic proteins. It
is adjacent to teh ATP-binding site of the ATP-PPase
subdomain. The largest difference between the primary
sequence of prokaryotic and eukaryotic GMP synthetase
map to the dimerization domain.Eukaryotic GMP synthetase
has several large insertions relative to prokaryotes.
Length = 295
Score = 88.7 bits (221), Expect = 2e-21
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 1 MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
++L L L QGTL PD+IES S S AD IK+HHN L + K+IEPL
Sbjct: 95 AKKLGLA---EYLAQGTLYPDVIESGSGKGS--ADTIKSHHNVGGLPE--DMKLKLIEPL 147
Query: 61 KDFHKDELRLYGLQF 75
+D KDE+R G +
Sbjct: 148 RDLFKDEVRELGREL 162
Score = 64.8 bits (159), Expect = 6e-13
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEER 161
VR+LG +LGL E+V RHPFPGPGLA+R++
Sbjct: 155 VRELGRELGLPEEIVERHPFPGPGLAVRILGEVTE 189
>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed.
Length = 511
Score = 85.1 bits (212), Expect = 1e-19
Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGN 122
+E + YG+QFHPEV T +G+ +L+NF+FD+CG G++T+++ EE I+ ++E VG+
Sbjct: 156 IANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQVGD 215
Query: 123 MKVLVRKLGL 132
KV+ LGL
Sbjct: 216 KKVI---LGL 222
Score = 68.2 bits (168), Expect = 8e-14
Identities = 25/33 (75%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
VRKLGL+LGL E+V RHPFPGPGLAIR++ GE
Sbjct: 370 VRKLGLELGLPEEIVYRHPFPGPGLAIRIL-GE 401
Score = 64.7 bits (159), Expect = 1e-12
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 2 EELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE--QGKVIEP 59
EE K L QGTL PD+IES + KA IK+HHN + L E + K++EP
Sbjct: 309 EEAKKLGGVKFLAQGTLYPDVIESGG---TKKAATIKSHHN----VGGLPEDMKLKLVEP 361
Query: 60 LKDFHKDELRLYGLQ 74
L++ KDE+R GL+
Sbjct: 362 LRELFKDEVRKLGLE 376
>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase.
Length = 536
Score = 68.6 bits (168), Expect = 6e-14
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVG 121
E R+YGLQ+HPEV + +G L++FLFDVCG+T ++ ++ EE I+ +K TVG
Sbjct: 173 ERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKATVG 227
Score = 54.3 bits (131), Expect = 5e-09
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 3 ELKLDPNQTLLCQGTLRPDLIESASHLASNK--ADVIKTHHNDSPLIRALREQGKVIEPL 60
E KL L QGTL PD+IES S + + IK+HHN L + + + K+IEPL
Sbjct: 329 EQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDM--KLKLIEPL 386
Query: 61 KDFHKDELRLYGL 73
K KDE+R G
Sbjct: 387 KLLFKDEVRKLGR 399
Score = 50.1 bits (120), Expect = 1e-07
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 156
VRKLG LG+ + RHPFPGPGLA+RV+
Sbjct: 394 VRKLGRLLGVPEAFLKRHPFPGPGLAVRVL 423
>gnl|CDD|223593 COG0519, GuaA, GMP synthase, PP-ATPase domain/subunit [Nucleotide
transport and metabolism].
Length = 315
Score = 60.3 bits (147), Expect = 3e-11
Identities = 22/33 (66%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
VR+LG +LGL E+V RHPFPGPGLA+R++ GE
Sbjct: 174 VRELGRELGLPEEIVYRHPFPGPGLAVRIL-GE 205
Score = 58.0 bits (141), Expect = 2e-10
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 13 LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYG 72
L QGT+ PD+IES + KA IK+HHN L + + K++EPL++ KDE+R G
Sbjct: 125 LAQGTIYPDVIESGT----GKAGTIKSHHNVGGLPEDM--KLKLVEPLRELFKDEVRELG 178
Query: 73 LQ 74
+
Sbjct: 179 RE 180
>gnl|CDD|233169 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hydrolyzing),
C-terminal domain or B subunit. This protein of purine
de novo biosynthesis is well-conserved. However, it
appears to split into two separate polypeptide chains in
most of the Archaea. This C-terminal region would be the
larger subunit [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 311
Score = 58.9 bits (143), Expect = 1e-10
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 13 LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYG 72
L QGT+ PD+IESA+ A VIK+HHN L ++ K++EPL++ KDE+R G
Sbjct: 121 LAQGTIYPDVIESAA----GTAHVIKSHHNVGGLPEDMKL--KLVEPLRELFKDEVRKLG 174
Query: 73 L 73
Sbjct: 175 K 175
Score = 57.3 bits (139), Expect = 4e-10
Identities = 24/33 (72%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
VRKLG +LGL E+V RHPFPGPGLA+RV+ GE
Sbjct: 170 VRKLGKELGLPEEIVWRHPFPGPGLAVRVL-GE 201
>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing),
N-terminal domain or A subunit. This protein of purine
de novo biosynthesis is well-conserved. However, it
appears to split into two separate polypeptide chains in
most of the Archaea. This N-terminal region would be the
smaller subunit [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 188
Score = 54.2 bits (131), Expect = 2e-09
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
E +YG+QFHPEV T G +L+NF++DVCG
Sbjct: 155 EKPIYGVQFHPEVTHTEYGNELLENFVYDVCG 186
>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in GMP synthetase. Type 1
glutamine amidotransferase (GATase1) domain found in GMP
synthetase. GMP synthetase is a glutamine
amidotransferase from the de novo purine biosynthetic
pathway. Glutamine amidotransferase (GATase) activity
catalyse the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. GMP
synthetase catalyses the amination of the nucleotide
precursor xanthosine 5'-monophospahte to form GMP. GMP
synthetase belongs to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 181
Score = 53.7 bits (130), Expect = 2e-09
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 67 ELRLYGLQFHPEVDLTNEGRTMLKNFL 93
E ++YG+QFHPEV T +G+ +LKNFL
Sbjct: 155 EKKIYGVQFHPEVTHTEKGKEILKNFL 181
>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II;
Provisional.
Length = 189
Score = 49.4 bits (119), Expect = 9e-08
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
EL +YG+QFHPE LT G +L+NFL
Sbjct: 155 VRHKELPIYGVQFHPESILTEHGHKLLENFL 185
>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 48.4 bits (116), Expect = 2e-07
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 65 KDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
+ R YG+QFHPEV G +L+NF ++CG
Sbjct: 163 RYGKRAYGVQFHPEVTHEY-GEALLENFAHEICG 195
>gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated.
Length = 307
Score = 48.8 bits (117), Expect = 3e-07
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
VR++ LGL E+ R PFPGPGLA+R+I GE
Sbjct: 168 VREVARALGLPEEISERMPFPGPGLAVRII-GE 199
Score = 48.0 bits (115), Expect = 6e-07
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 14/70 (20%)
Query: 2 EELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE--QGKVIEP 59
EE+ + L QGT+ PD IES IK+HHN + L E K++EP
Sbjct: 112 EEVAKEIGAEYLVQGTIAPDWIESEGG--------IKSHHN----VGGLPEGMVLKIVEP 159
Query: 60 LKDFHKDELR 69
L+D +KDE+R
Sbjct: 160 LRDLYKDEVR 169
>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component
II [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 191
Score = 46.4 bits (111), Expect = 1e-06
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
+L +YG+QFHPE LT G +L+NFL
Sbjct: 158 VRHKKLPIYGVQFHPESILTEYGHRILENFL 188
>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine
amidotransferase (GATase1) domain found in Anthranilate
synthase. Type 1 glutamine amidotransferase (GATase1)
domain found in Anthranilate synthase (ASase). This
group contains proteins similar to para-aminobenzoate
(PABA) synthase and ASase. These enzymes catalyze
similar reactions and produce similar products, PABA and
ortho-aminobenzoate (anthranilate). Each enzyme is
composed of non-identical subunits: a glutamine
amidotransferase subunit (component II) and a subunit
that produces an aminobenzoate products (component I).
ASase catalyses the synthesis of anthranilate from
chorismate and glutamine and is a tetrameric protein
comprising two copies each of components I and II.
Component II of ASase belongs to the family of triad
GTases which hydrolyze glutamine and transfer nascent
ammonia between the active sites. In some bacteria, such
as Escherichia coli, component II can be much larger
than in other organisms, due to the presence of
phosphoribosyl-anthranilate transferase (PRTase)
activity. PRTase catalyses the second step in tryptophan
biosynthesis and results in the addition of
5-phosphoribosyl-1-pyrophosphate to anthranilate to
create N-5'-phosphoribosyl-anthranilate. In E.coli, the
first step in the conversion of chorismate to PABA
involves two proteins: PabA and PabB which co-operate to
transfer the amide nitrogen of glutamine to chorismate
forming 4-amino-4 deoxychorismate (ADC). PabA acts as a
glutamine amidotransferase, supplying an amino group to
PabB, which carries out the amination reaction. A third
protein PabC then mediates elimination of pyruvate and
aromatization to give PABA. Several organisms have
bipartite proteins containing fused domains homologous
to PabA and PabB commonly called PABA synthases. These
hybrid PABA synthases may produce ADC and not PABA.
Length = 184
Score = 45.6 bits (109), Expect = 2e-06
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 13/55 (23%)
Query: 39 THHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
T + +I ALR H+D L +YG+QFHPE LT G +L+NFL
Sbjct: 143 TASTEDGVIMALR------------HRD-LPIYGVQFHPESILTEYGLRLLENFL 184
>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated.
Length = 184
Score = 45.6 bits (109), Expect = 2e-06
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
HK+ +YG+QFHPEV T G + KNFL ++CG
Sbjct: 150 HKE-KPIYGVQFHPEVAHTEYGEEIFKNFL-EICG 182
>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I.
Length = 186
Score = 44.2 bits (105), Expect = 7e-06
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFDV 96
E ++G+QFHPE LT G +L NF +
Sbjct: 156 KENPIFGVQFHPESSLTPGGPELLFNFFIKL 186
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 534
Score = 43.9 bits (104), Expect = 2e-05
Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
HK E ++G+QFHPE LT EG+ +LKNFL
Sbjct: 158 HK-EHPIFGVQFHPESILTEEGKRILKNFL 186
>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2.
Length = 190
Score = 42.8 bits (101), Expect = 2e-05
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
HK L G+QFHPE LT G+ +L+NFL
Sbjct: 157 HKKYKMLRGIQFHPESLLTTHGQQILRNFL 186
>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II;
Provisional.
Length = 214
Score = 42.3 bits (100), Expect = 4e-05
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 14/72 (19%)
Query: 39 THHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
T DS +I A+R H+ EL ++G+QFHPE LT G ML N+L VCG
Sbjct: 148 TARTDSGVIMAVR------------HR-ELPIHGVQFHPESVLTEGGHRMLANWL-TVCG 193
Query: 99 LTGNFTLKSREE 110
+ L R E
Sbjct: 194 WAPDEALVRRLE 205
>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase
glutamine amidotransferase component II; Validated.
Length = 195
Score = 38.6 bits (90), Expect = 7e-04
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
HK L + G+QFHPE +T+ G+ +L+NF+
Sbjct: 157 HK-TLPIEGVQFHPESIMTSHGKELLQNFI 185
>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase.
Length = 222
Score = 37.9 bits (88), Expect = 0.001
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
H+ + G+QFHPE +T EG+T+++NF+
Sbjct: 181 HRKYKHIQGVQFHPESIITTEGKTIVRNFI 210
>gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase.
Length = 918
Score = 36.7 bits (85), Expect = 0.005
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 71 YGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKV 125
YGLQFHPE T GR + KNF +T ++ L+ R L + NM+V
Sbjct: 310 YGLQFHPESIATCYGRQIFKNFR----EITQDYWLRLRSTSLRRRNSNLTANMQV 360
>gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II;
Provisional.
Length = 190
Score = 35.1 bits (81), Expect = 0.009
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
L +YG+QFHPE ++ G +L+N+L
Sbjct: 156 MQHKTLPIYGVQFHPESYISEFGEQILRNWL 186
>gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate
synthase or aminodeoxychorismate synthase. This model
describes the glutamine amidotransferase domain or
peptide of the tryptophan-biosynthetic pathway enzyme
anthranilate synthase or of the folate biosynthetic
pathway enzyme para-aminobenzoate synthase. In at least
one case, a single polypeptide from Bacillus subtilis
was shown to have both functions. This model covers a
subset of the sequences described by the PFAM model
GATase.
Length = 188
Score = 35.1 bits (81), Expect = 0.011
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
H+D L L G+QFHPE L+ +G +L NFL
Sbjct: 158 HRD-LPLEGVQFHPESILSEQGHQLLANFL 186
>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II;
Provisional.
Length = 191
Score = 34.5 bits (79), Expect = 0.016
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 47 IRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
+ A E+G ++ + L L G+QFHPE L+ +G +L NFL
Sbjct: 143 LTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFL 189
>gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II;
Provisional.
Length = 187
Score = 33.7 bits (77), Expect = 0.032
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 67 ELRLYGLQFHPEVDLTNEGRTMLKNFL 93
+ L G+QFHPE L+ +G +L NFL
Sbjct: 159 QWDLEGVQFHPESILSEQGHQLLANFL 185
>gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 196
Score = 33.7 bits (78), Expect = 0.034
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 71 YGLQFHPEVDLTNEGRTMLKNFL 93
+G+QFHPE G +LKNFL
Sbjct: 173 FGVQFHPERSGAA-GAQLLKNFL 194
>gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II;
Provisional.
Length = 193
Score = 32.5 bits (74), Expect = 0.069
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 52 EQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
E G + E + HK L + +QFHPE T +G +L NFL
Sbjct: 150 EDGSMDEIMGFQHK-TLPIEAVQFHPESIKTEQGHQLLANFL 190
>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 188
Score = 31.4 bits (72), Expect = 0.15
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 7/25 (28%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFL 93
R GLQFHPE +L+NFL
Sbjct: 171 RALGLQFHPE-------ERLLRNFL 188
>gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and
metabolism].
Length = 204
Score = 29.5 bits (67), Expect = 0.81
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 70 LYGLQFHPEVDLTNEGRTMLKNFL 93
++G QFHPE G +LKNFL
Sbjct: 178 VFGTQFHPEKS-GKAGLKLLKNFL 200
>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 531
Score = 30.0 bits (67), Expect = 0.82
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 66 DELRLYGLQFHPEVDLTNEGRTMLKNFL 93
D R+ G QFHPE LT +G +L+ L
Sbjct: 160 DADRVCGFQFHPESILTTQGARLLEQTL 187
>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 199
Score = 29.1 bits (66), Expect = 0.92
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
KD +Y +QFHPE G +LKNF
Sbjct: 171 AKD--NIYAVQFHPEKSGKA-GLKLLKNFA 197
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 29.7 bits (66), Expect = 1.1
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 106 KSREEELIKYVKETVGNMKVLVRKL--GLDLGLTPEVVMR 143
K EEL +++ + L ++ T
Sbjct: 464 KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFL 503
>gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase,
glutamine amidotransferase subunit. This model
represents the glutamine amidotransferase subunit (or
domain, in eukaryotic systems) of imidazole glycerol
phosphate synthase. This subunit catalyzes step 5 of
histidine biosynthesis from PRPP. The other subunit, the
cyclase, catalyzes step 6 [Amino acid biosynthesis,
Histidine family].
Length = 196
Score = 28.8 bits (65), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFL 93
++G QFHPE G +L+NFL
Sbjct: 171 NIFGTQFHPEKS-GKTGLKLLENFL 194
>gnl|CDD|200373 TIGR04122, Xnuc_lig_assoc, putative exonuclease, DNA
ligase-associated. Members of this protein family
frequently are found annotated as a putative exonuclease
involved in mRNA processing. This protein is found,
exclusively in bacteria, associated with three other
proteins: an ATP-dependent DNA ligase, a helicase, and
putative phosphoesterase.
Length = 326
Score = 29.1 bits (66), Expect = 1.3
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 20 PDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDE 67
P L+ + + +V TH + L+R LREQG PL ++DE
Sbjct: 281 PGLLRTI--KETGAEEVWVTHGYEDALVRWLREQGIDARPLHTVYEDE 326
>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). IGPS incorporates ammonia derived from
glutamine into
N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to form
5'-(5-aminoimidazole-4-carboxamide) ribonucleotide
(AICAR) and imidazole glycerol phosphate (IGP). The
glutamine amidotransferase domain generates the ammonia
nucleophile which is channeled from the glutaminase
active site to the PRFAR active site. IGPS belong to the
triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 198
Score = 28.6 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 9/28 (32%)
Query: 70 LYGLQFHPE----VDLTNEGRTMLKNFL 93
++G QFHPE G +LKNFL
Sbjct: 176 IFGTQFHPEKSGKA-----GLKLLKNFL 198
>gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 205
Score = 28.6 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
KD ++G QFHPE G +LKNF+
Sbjct: 173 GKD--NVFGAQFHPEKSGDV-GLKILKNFV 199
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 29.1 bits (66), Expect = 1.7
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 98 GLTGNFTLKSREEELIKYVKET--VGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGL 151
GLT + SR+E I+Y +E GN+ + + +T +V R PF G GL
Sbjct: 436 GLT--LGIHSRDEREIEYWRERVEAGNLYI-------NRNITGAIVGRQPFGGWGL 482
>gnl|CDD|216697 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family
contains several NIF3 (NGG1p interacting factor 3)
protein homologues. NIF3 interacts with the yeast
transcriptional coactivator NGG1p which is part of the
ADA complex, the exact function of this interaction is
unknown.
Length = 237
Score = 28.4 bits (64), Expect = 1.9
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 27/124 (21%)
Query: 17 TLRPDLIESASHLASNKADVIKTHHNDSPLI----RALREQGKVIEPLKDFHKDELRLYG 72
++IE A N AD+I THH PLI + + + K+ + LY
Sbjct: 40 DATEEVIEEA---IENGADLIITHH---PLIFKPLKRITGDDPKGRRILKLIKNNISLYS 93
Query: 73 LQFHPEVDLTNEG-------------RTMLKNFLFDVCGLTGNFTLKSRE--EELIKYVK 117
H +D G L+ + + GL L EEL K VK
Sbjct: 94 --AHTNLDAAPGGVNDWLAELLGLESIEPLEPSVSEGEGLGRIGELPEPISLEELAKRVK 151
Query: 118 ETVG 121
E +G
Sbjct: 152 ERLG 155
>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF.
Length = 538
Score = 28.5 bits (64), Expect = 2.0
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 71 YGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYV 116
+ +QFHPE G ++L+ FL T T + L K V
Sbjct: 186 HAVQFHPEKS-GATGLSILRRFLEPKSSATQKPTEGKASKSLAKRV 230
>gnl|CDD|218930 pfam06186, DUF992, Protein of unknown function (DUF992). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 147
Score = 28.0 bits (63), Expect = 2.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 127 VRKLGLDLGLTPEVVMR 143
+RK GLDLG T E VM
Sbjct: 61 IRKFGLDLGFTGETVMA 77
>gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional.
Length = 720
Score = 28.3 bits (64), Expect = 2.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGR---TMLKN 91
HK L + +QFHPE +T G +++N
Sbjct: 684 HK-TLPVAAVQFHPESIMTLGGDVGLRIIEN 713
>gnl|CDD|237289 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 200
Score = 27.9 bits (63), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 7/26 (26%)
Query: 71 YGLQFHPEVDLTNEGRT---MLKNFL 93
+G QFHPE G T +L+NF+
Sbjct: 174 FGTQFHPE----KSGETGLKILENFV 195
>gnl|CDD|180590 PRK06490, PRK06490, glutamine amidotransferase; Provisional.
Length = 239
Score = 28.0 bits (63), Expect = 3.0
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 71 YGLQFHPEV 79
+GLQFHPEV
Sbjct: 173 WGLQFHPEV 181
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group includes proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4
beta-galactosidase middle domain. The majority of
proteins in this group have a reactive Cys found in the
sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow. For Class I glutamine
amidotransferases proteins which transfer ammonia from
the amide side chain of glutamine to an acceptor
substrate, this Cys forms a Cys-His-Glu catalytic triad
in the active site. Glutamine amidotransferases
activity can be found in a range of biosynthetic enzymes
included in this cd: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. For
Pyrococcus horikoshii PH1704, the Cys of the nucleophile
elbow together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Length = 115
Score = 26.8 bits (59), Expect = 4.0
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 12/55 (21%)
Query: 49 ALREQGKVIEPLKDFHKDELR-----------LYGLQFHPEV-DLTNEGRTMLKN 91
L ++ L++ + G+QFHPE D G +L N
Sbjct: 61 DLARDEALLALLREAAAAGKPILGICLGAQLLVLGVQFHPEAIDGAEAGARLLVN 115
>gnl|CDD|233864 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase,
N-terminal domain. The only examples in which the
wobble position of a tRNA must discriminate between G
and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop)
vs. UGG (Trp). In all bacteria, the wobble position of
the tRNA(Ile) recognizing AUA is lysidine, a lysine
derivative of cytidine. This family describes a protein
domain found, apparently, in all bacteria in a single
copy. Eukaryotic sequences appear to be organellar. The
domain archictecture of this protein family is variable;
some, including characterized proteins of E. coli and B.
subtilis known to be tRNA(Ile)-lysidine synthetase,
include a conserved 50-residue domain that many other
members lack. This protein belongs to the ATP-binding
PP-loop family ( pfam01171). It appears in the
literature and protein databases as TilS, YacA, and
putative cell cycle protein MesJ (a misnomer) [Protein
synthesis, tRNA and rRNA base modification].
Length = 189
Score = 27.2 bits (61), Expect = 4.8
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 26/93 (27%)
Query: 26 ASHLASNKADVIKT-HHND---------------------SPLIRALREQGKVIEPLKDF 63
+ AD I T HH D IR L G++I PL
Sbjct: 92 EEIAKKHGADYILTAHHADDQAETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLGI 151
Query: 64 HKDELRLYGLQFH---PEVDLTNEGRTMLKNFL 93
K E+ Y L+ + D TN+ L+N +
Sbjct: 152 SKSEIEEY-LKENGLPWFEDETNQDDKYLRNRI 183
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 27.1 bits (60), Expect = 5.7
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 108 REEELIKYVKETVGNMKVLVRKLGLDLGLTPEVV----MRHPFPGPGLAIRVICGEERYI 163
+ E +E + + L+R LG+ L + GPG I V E R +
Sbjct: 110 EDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAGPGFEIEVDHPEGRGL 169
Query: 164 E 164
E
Sbjct: 170 E 170
>gnl|CDD|107329 cd06334, PBP1_ABC_ligand_binding_like_1, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in transport of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. Members of this group are
sequence-similar to members of the family of ABC-type
hydrophobic amino acid transporters, such as
leucine-isoleucine-valine-binding protein (LIVBP);
however their ligand specificity has not been determined
experimentally.
Length = 351
Score = 27.2 bits (61), Expect = 5.8
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 115 YVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPG 148
+ KE + +K L KLG ++ L P P P
Sbjct: 152 FGKEPIEALKALAEKLGFEVVLEPVP---PPGPN 182
>gnl|CDD|211966 TIGR04243, nodulat_NodB, chitooligosaccharide deacetylase NodB.
Nodulation factors are lipooligosaccharide signalling
molecules produced by rhizobia, the symbiotic
nitrogen-fixing bacteria that form nodules in plants.
These Nod factor sustems have the NodABC genes in common
but differ subtly in what they produce, which affects
host range. NodB is a chitooligosaccharide deacetylase.
Length = 197
Score = 27.0 bits (60), Expect = 5.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 46 LIRALREQGKVIEPL 60
LI AL E+G VI L
Sbjct: 182 LIPALHERGFVIRSL 196
>gnl|CDD|129361 TIGR00259, thylakoid_BtpA, membrane complex biogenesis protein,
BtpA family. Members of this family are found in C.
elegans, Synechocystis sp., E. coli, and several of the
Archaea. Members in Cyanobacteria have been shown to
play a role in protein complex biogenesis, and
designated BtpA (biogenesis of thylakoid protein).
Homologs in non-photosynthetic species, where thylakoid
intracytoplasmic membranes are lacking, are likely to
act elsewhere in membrane protein biogenesis [Protein
fate, Protein folding and stabilization].
Length = 257
Score = 27.1 bits (60), Expect = 6.1
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 46 LIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTL 105
LIR + G ++ L D G DL + ++ L D L+G T
Sbjct: 129 LIRYKKLLGSEVKILADIVVKHAVHLG-----NRDLESIALDTVERGLADAVILSGKTTG 183
Query: 106 KSREEELIKYVKETVGNMKVLV 127
+ EL+K KETV + VL
Sbjct: 184 TEVDLELLKLAKETVKDTPVLA 205
>gnl|CDD|217039 pfam02446, Glyco_hydro_77, 4-alpha-glucanotransferase. These
enzymes EC:2.4.1.25 transfer a segment of a
(1,4)-alpha-D-glucan to a new 4-position in an acceptor,
which may be glucose or (1,4)-alpha-D-glucan.
Length = 493
Score = 26.9 bits (60), Expect = 6.6
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 106 KSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVV-MRHPFPGPGLAI 153
K ++L + E G M ++ LG EV + F PG+ I
Sbjct: 310 KYPGDDLFSILLEESGEMLIIGEDLGTI---PEEVRELLDEFGIPGMKI 355
>gnl|CDD|237796 PRK14712, PRK14712, conjugal transfer nickase/helicase TraI;
Provisional.
Length = 1623
Score = 27.1 bits (59), Expect = 6.6
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 20 PDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEV 79
PD + LA + A +K + +REQ + + ++ EL+ G+ HPEV
Sbjct: 441 PDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRS----ELKTQGVLGHPEV 496
Query: 80 DLT 82
+T
Sbjct: 497 TMT 499
>gnl|CDD|176106 cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding
domain of LysR-type transcriptional regulators involved
in the catabolism of aromatic compounds and that of
other related regulators, contains type 2 periplasmic
binding fold. This CD includes the C-terminal substrate
binding domain of LTTRs involved in degradation of
aromatic compounds, such as CbnR, BenM, CatM, ClcR and
TfdR, as well as that of other transcriptional
regulators clustered together in phylogenetic trees,
including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and
OccR. The structural topology of this substrate-binding
domain is most similar to that of the type 2 periplasmic
binding proteins (PBP2), which are responsible for the
uptake of a variety of substrates such as phosphate,
sulfate, polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis. Besides transport proteins, the PBP2
superfamily includes the substrate-binding domains from
ionotropic glutamate receptors, LysR-like
transcriptional regulators, and unorthodox sensor
proteins involved in signal transduction.
Length = 197
Score = 26.7 bits (60), Expect = 7.4
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 132 LDLGLTPEVVMRHPFPGPGLAIRVICGEERYI 163
LD+G +R P PGLA R + E +
Sbjct: 50 LDVGF-----VRPPPDPPGLASRPL-LREPLV 75
>gnl|CDD|112262 pfam03437, BtpA, BtpA family. The BtpA protein is tightly
associated with the thylakoid membranes, where it
stabilises the reaction centre proteins of photosystem
I.
Length = 254
Score = 26.6 bits (59), Expect = 7.8
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 20/124 (16%)
Query: 18 LRPDLIESASHLASNKADVIKTHH--------------NDSPLIRALREQGKVIEPLKDF 63
LR D + + + + AD I+ + N L R + I+ L D
Sbjct: 88 LRNDAVAALAIAYAVGADFIRVNVLTGVAASDQGILEGNAGELARYRKLLPSRIKILADV 147
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNM 123
H G D+ + ++ L D L+G T + E +K KETV +
Sbjct: 148 HVKHAVHLG-----NRDIESAVLDTIERGLADAVILSGKTTGGEVDLEELKLAKETV-PV 201
Query: 124 KVLV 127
VLV
Sbjct: 202 PVLV 205
>gnl|CDD|129286 TIGR00182, plsX, fatty acid/phospholipid synthesis protein PlsX.
This protein of fatty acid/phospholipid biosynthesis,
called PlsX after the member in Streptococcus
pneumoniae, is proposed to be a phosphate
acyltransferase that partners with PlsY (TIGR00023) in a
two-step 1-acylglycerol-3-phosphate biosynthesis pathway
alternative to the one-step PlsB (EC 2.3.1.15) pathway
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 322
Score = 26.6 bits (59), Expect = 7.9
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 38 KTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTN--EGRTMLKNFLFD 95
K DSP + L G D HK+ +L L+ P ++ E R +L + D
Sbjct: 156 KVLGVDSPRV-GLLNIGTEDNKGNDLHKETFQL--LKEDPNINFIGNVEARDLLDG-VCD 211
Query: 96 VC---GLTGNFTLKSRE 109
V G TGN LK+ E
Sbjct: 212 VLVCDGFTGNVVLKTME 228
>gnl|CDD|237290 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 209
Score = 26.3 bits (59), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 70 LYGLQFHPE--VDLTNEGRTMLKNFL 93
L+ QFHPE D G +L+NFL
Sbjct: 183 LFATQFHPEKSQDA---GLALLRNFL 205
>gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 432
Score = 26.5 bits (58), Expect = 9.1
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 21 DLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEL-----RLYGLQF 75
+L++ S+ + ++T PL L E+ I ++ F +E+ R GL F
Sbjct: 75 ELLKQKSYTEPERKKTLQTL---KPLSERLEEKESAIYEIESFELEEVITEPERPVGLSF 131
Query: 76 HPEVDLTN 83
E+ N
Sbjct: 132 EKELFEKN 139
>gnl|CDD|235802 PRK06446, PRK06446, hypothetical protein; Provisional.
Length = 436
Score = 26.6 bits (59), Expect = 9.7
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 84 EGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLD 133
EGR ++ F DV LT EE + +K+ +++ L + LG
Sbjct: 221 EGRVLIPGFYDDVRELT---------EEERELLKKYDIDVEELRKALGFK 261
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.404
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,897,311
Number of extensions: 950507
Number of successful extensions: 1082
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1068
Number of HSP's successfully gapped: 81
Length of query: 188
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 97
Effective length of database: 6,901,388
Effective search space: 669434636
Effective search space used: 669434636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)