RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7151
(188 letters)
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 114 bits (288), Expect = 5e-30
Identities = 50/74 (67%), Positives = 61/74 (82%)
Query: 1 MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
+ E+ L P + L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPL
Sbjct: 356 IGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPL 415
Query: 61 KDFHKDELRLYGLQ 74
KDFHKDE+R+ G +
Sbjct: 416 KDFHKDEVRILGRE 429
Score = 104 bits (261), Expect = 2e-26
Identities = 34/62 (54%), Positives = 46/62 (74%)
Query: 66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKV 125
+ +LYG QFHPEV LT G+ +LKNFL+D+ G +G FT+++RE E I+ +KE VG KV
Sbjct: 184 ESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKV 243
Query: 126 LV 127
LV
Sbjct: 244 LV 245
Score = 83.5 bits (207), Expect = 3e-19
Identities = 36/60 (60%), Positives = 44/60 (73%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKK 186
VR LG +LGL E+V RHPFPGPGLAIRVIC EE YI KD+ ET ++KI+ ++ KK
Sbjct: 423 VRILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSASVKK 482
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 85.6 bits (213), Expect = 5e-20
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGN 122
+ R +GLQFHPEV T +G +L +F+ +C N+T K E+ I+ ++E VG
Sbjct: 171 MADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDSIRDIQEKVGK 230
Query: 123 MKVLVRKLGL 132
+V+ +GL
Sbjct: 231 EQVI---VGL 237
Score = 66.7 bits (164), Expect = 2e-13
Identities = 23/33 (69%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
VRKLGL+LGL +++ RHPFPGPGLAIR++ GE
Sbjct: 386 VRKLGLELGLPADLIYRHPFPGPGLAIRIL-GE 417
Score = 60.2 bits (147), Expect = 3e-11
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 13 LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYG 72
L QGT+ PD+IESA + K +IKTHHN L + + K+IEPL++ KDE+R G
Sbjct: 334 LGQGTIYPDVIESAKT-KTGKGHIIKTHHNVGGLPLNM--ELKLIEPLRELFKDEVRKLG 390
Query: 73 LQ 74
L+
Sbjct: 391 LE 392
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 85.6 bits (213), Expect = 6e-20
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGN 122
+E R YG+QFHPEV T +G ML+ F+ D+C +T ++ + ++E VG+
Sbjct: 168 MANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVGD 227
Query: 123 MKVLVRKLGL 132
KV+ LGL
Sbjct: 228 DKVI---LGL 234
Score = 66.7 bits (164), Expect = 2e-13
Identities = 21/33 (63%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
VRK+GL+LGL +++ RHPFPGPGL +RV+ GE
Sbjct: 384 VRKIGLELGLPYDMLYRHPFPGPGLGVRVL-GE 415
Score = 59.4 bits (145), Expect = 6e-11
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 15/68 (22%)
Query: 13 LCQGTLRPDLIESASHLASNKADVIKTHHN------DSPLIRALREQGKVIEPLKDFHKD 66
L QGT+ PD+IESA+ A+ KA VIK+HHN + + ++EPLK+ KD
Sbjct: 332 LAQGTIYPDVIESAAS-ATGKAHVIKSHHNVGGLPKEMKM--------GLVEPLKELFKD 382
Query: 67 ELRLYGLQ 74
E+R GL+
Sbjct: 383 EVRKIGLE 390
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 84.6 bits (210), Expect = 1e-19
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKV 125
E +YG+Q+HPEV + +G M NF +++C F E +K +++ + V
Sbjct: 199 KEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFDPIRYHELELKNIEKYKHDHYV 258
Query: 126 LVRKLGL 132
+ +
Sbjct: 259 I---AAM 262
Score = 67.2 bits (165), Expect = 1e-13
Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
V+ L +L L E+ RHPFPGPGLAIRVI GE
Sbjct: 415 VKTLSRELNLPEEITNRHPFPGPGLAIRVI-GE 446
Score = 65.3 bits (160), Expect = 5e-13
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 EELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLK 61
+ +D N+T L QGTL PD+IES + N +D IKTHHN L + L + K+ EP K
Sbjct: 353 NNIDIDINKTFLLQGTLYPDIIESKC--SKNLSDTIKTHHNVGGLPKNL--KFKLFEPFK 408
Query: 62 DFHKDELRLYGLQ 74
KD+++ +
Sbjct: 409 YLFKDDVKTLSRE 421
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 79.0 bits (196), Expect = 9e-18
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGN 122
+ R YG+QFHPEV T +G +L+NFL ++ G+ ++T + EEL++ V+E G
Sbjct: 151 IASPDGRAYGVQFHPEVAHTPKGMQILENFL-ELAGVKRDWTPEHVLEELLREVRERAGK 209
Query: 123 MKVLVRKLGL 132
+VL L +
Sbjct: 210 DRVL---LAV 216
Score = 66.3 bits (163), Expect = 2e-13
Identities = 21/33 (63%), Positives = 26/33 (78%), Gaps = 1/33 (3%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
VR+L L LGL + +RHPFPGPGLA+RV+ GE
Sbjct: 362 VRELALLLGLPDTLRLRHPFPGPGLAVRVL-GE 393
Score = 59.8 bits (146), Expect = 4e-11
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 13 LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYG 72
L QGTL PD+IESA + A IK+HHN L L + +++EP + KDE+R
Sbjct: 312 LAQGTLYPDVIESAG---GHGAAKIKSHHNVGGLPEDL--EFELLEPFRLLFKDEVRELA 366
Query: 73 LQ 74
L
Sbjct: 367 LL 368
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine
amidotransferase, ligase, cytoplasm; 2.40A {Homo
sapiens}
Length = 218
Score = 71.8 bits (177), Expect = 5e-16
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFT 104
+ +LYG QFHPEV LT G+ +LKNFL+D+ G +G FT
Sbjct: 179 ESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFT 217
>2a9v_A GMP synthase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, ligase;
2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Length = 212
Score = 62.9 bits (154), Expect = 9e-13
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKS 107
+Y QFHPEV+ T GR + +NF+ +C ++
Sbjct: 169 KTRPIYATQFHPEVEHTQYGRDIFRNFI-GICASYREIQKEN 209
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
pyrococcus horikoshii OT3, structural genomics, NPPSFA;
1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Length = 308
Score = 63.7 bits (156), Expect = 1e-12
Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
VR+L LGL ++ R PFPGPGLA+RVI GE
Sbjct: 169 VRELAKFLGLPEKIYNRMPFPGPGLAVRVI-GE 200
Score = 55.2 bits (134), Expect = 1e-09
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 14/64 (21%)
Query: 13 LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE--QGKVIEPLKDFHKDELRL 70
L QGT+ PD IES IK+HHN + L E K+IEPL+D +KDE+R
Sbjct: 124 LIQGTIAPDWIESQG--------KIKSHHN----VGGLPEKLNLKLIEPLRDLYKDEVRE 171
Query: 71 YGLQ 74
Sbjct: 172 LAKF 175
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase,
gatases, riken structural genomics/proteomics
initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP:
c.23.16.1 PDB: 2d7j_A
Length = 189
Score = 51.9 bits (125), Expect = 7e-09
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 59 PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
P++ +EL +YG+QFHPEV T +G +L+NF +CG
Sbjct: 149 PIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFA-KLCG 187
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase;
HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1
PDB: 1i7q_B 1i7s_B*
Length = 192
Score = 49.4 bits (119), Expect = 6e-08
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
H R+ G QFHPE LT +G +L+ L
Sbjct: 158 HD-ADRVCGFQFHPESILTTQGARLLEQTL 186
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan
biosynthesis, glutamine amidotransferase, allosteric
interaction, lyase; 2.50A {Sulfolobus solfataricus}
SCOP: c.23.16.1
Length = 195
Score = 48.2 bits (116), Expect = 2e-07
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 64 HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
H+ E +YG+QFHPE T+ G +L NFL
Sbjct: 164 HE-EYPIYGVQFHPESVGTSLGYKILYNFL 192
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved
protein, structural genomics; 1.90A {Methanocaldococcus
jannaschii}
Length = 186
Score = 35.4 bits (82), Expect = 0.005
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFLFDVC 97
+ L FHPE L+ +G + K F+ +
Sbjct: 158 KYMALSFHPE--LSEDGYKVYKYFVENCV 184
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel,
chorismate, type 1 glutamine amidotransfera phenazine
biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP}
PDB: 3r74_A* 3r76_A*
Length = 645
Score = 33.7 bits (77), Expect = 0.027
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFL 93
+QFH E LT +G +L +
Sbjct: 606 TFSSMQFHAESVLTVDGPRILGEAI 630
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 33.2 bits (76), Expect = 0.033
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 27/64 (42%)
Query: 42 NDSPLIRALREQGKVIEPLKDFHKDELRL-----------------------YGLQFHPE 78
+D+ R ++ +V + +H D L GLQFH E
Sbjct: 132 SDNKFFREFPDRLRVFQ----WHGDTFDLPRRATRVFTSEKYENQGFVYGKAVGLQFHIE 187
Query: 79 VDLT 82
V
Sbjct: 188 VGAR 191
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase,
transferas; 2.70A {Streptococcus mutans}
Length = 236
Score = 30.5 bits (69), Expect = 0.22
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 69 RLYGLQFHPEVD 80
+ Y Q H E
Sbjct: 172 KQYAFQCHLEFT 183
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2;
HET: MSE; 1.30A {Methylobacillus flagellatus} PDB:
3l83_A*
Length = 250
Score = 30.5 bits (69), Expect = 0.28
Identities = 4/12 (33%), Positives = 5/12 (41%)
Query: 69 RLYGLQFHPEVD 80
G Q H E+
Sbjct: 169 LHIGFQCHIEMQ 180
>1gpw_B Amidotransferase HISH; lyase/transferase, complex
(lyase/transferase), histidine biosynthesis,
glutaminase, glutamine amidotransferase; 2.4A
{Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
2wjz_B
Length = 201
Score = 30.2 bits (69), Expect = 0.32
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 9/28 (32%)
Query: 70 LYGLQFHPE----VDLTNEGRTMLKNFL 93
+ G QFHPE + GR +L+ +
Sbjct: 172 ILGFQFHPEKSSKI-----GRKLLEKVI 194
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus}
Length = 191
Score = 29.9 bits (67), Expect = 0.36
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFLFDVCGL 99
++ FHPE LT + R + + FL ++ G+
Sbjct: 165 KVLASSFHPE--LTEDPR-LHRYFL-ELAGV 191
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.48
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 124 KVLVRKLGLDLGL-TPEVVMRHPFPGPGLAIR 154
K ++KL L L + P LAI+
Sbjct: 19 KQALKKLQASLKLYADD-------SAPALAIK 43
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase transferase; HET:
5RP; 2.90A {Thermotoga maritima}
Length = 208
Score = 29.4 bits (66), Expect = 0.50
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFL 93
+ FHPE LT++ R + + FL
Sbjct: 183 NILACTFHPE--LTDDLR-LHRYFL 204
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.60
Identities = 19/139 (13%), Positives = 47/139 (33%), Gaps = 19/139 (13%)
Query: 61 KDFHKDELRLYGLQFHPEVDLTNEG---RTMLKNFLFDVCGLTGNFTLKSREEELIKYV- 116
K + + + + +V L NE R+++ ++ + + ++ ++
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 117 ----KETVGNMKVLVRKLGLDLGLTPEVVMRH---PFPGPGLAIRVICGEERYIEKDYSE 169
L R + LD E +RH + G + + + Y K Y
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFL-EQKIRHDSTAWNASGSILNTLQQLKFY--KPY-- 533
Query: 170 TQVLVKIIVEYDQMFKKII 188
+ +Y+++ I+
Sbjct: 534 ---ICDNDPKYERLVNAIL 549
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Length = 315
Score = 28.9 bits (64), Expect = 0.91
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 56 VIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD 95
IE + + +YG+Q+HPE + +
Sbjct: 221 KIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPN 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.3
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 8 PNQTLLCQGTLR--PDLIESASHLASNKADVIKTHHNDSPLIRALREQ 53
NQ + G LR + + + K D+I+ S + +
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL--QKSLSLEEVEGH 1894
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2,
predicted glutamine amidotransferase, PSI; HET: MSE;
1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Length = 219
Score = 28.2 bits (63), Expect = 1.4
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFL 93
+ G FHPE LT++ R +++ FL
Sbjct: 185 QFLGCSFHPE--LTDDHR-LMQYFL 206
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich,
rossmann fold, glutaminase; 1.73A {Bacillus subtilis}
SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Length = 196
Score = 27.7 bits (62), Expect = 1.9
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFL 93
+ G FHPE LT + R + + F+
Sbjct: 163 QFLGCSFHPE--LTEDHR-VTQLFV 184
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.23.16.1
Length = 200
Score = 27.5 bits (62), Expect = 2.1
Identities = 8/28 (28%), Positives = 8/28 (28%), Gaps = 9/28 (32%)
Query: 70 LYGLQFHPE----VDLTNEGRTMLKNFL 93
L QFHPE G L
Sbjct: 172 LLAPQFHPEKSGKA-----GLAFLALAR 194
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, unknown function; HET: MSE; 2.95A {Bacillus
subtilis} SCOP: c.77.1.4
Length = 345
Score = 27.5 bits (62), Expect = 2.7
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 84 EGRTMLKNFLFD--VC-GLTGNFTLKSRE---EELIKYVKETVGNMKVLVRKLG 131
E R +L + + D V G TGN TLK+ E + K +++ + L KL
Sbjct: 211 EARDLLDD-VADVVVTDGFTGNVTLKTLEGSALSIFKMMRDVM--TSTLTSKLA 261
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding,
prokaryotic SH3 stenotrophomonus maltophilia, metal
transport; 1.70A {Stenotrophomonas maltophilia}
Length = 85
Score = 25.8 bits (57), Expect = 3.2
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 105 LKSREEELIKYVKETVGNMKVLVRKLGLDLGLTP----EVVMRHPFPGPGLAIRV 155
L +++ V++ N + R+L +LG +V + P G L ++V
Sbjct: 7 LPLHTSAVVESVQDLHAN-DAIARRL-RELGFVKGEEVRMVAKGPVGGEPLLVQV 59
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown
function; 2.60A {Thermus thermophilus}
Length = 242
Score = 26.8 bits (60), Expect = 4.6
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 20/116 (17%)
Query: 17 TLRPDLIESASHLASNKADVIKTHHNDSPLI-----RALREQGKVIEPLKDFHKDELRLY 71
+ A + D + HH L + + +E L + + LY
Sbjct: 44 DAGEAIFRKA---LEEEVDFLIVHH---GLFWGKPFPIVGHHKRRLETLF---QGGINLY 94
Query: 72 G----LQFHPE--VDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVG 121
L H E + L + G+ G F + ++ + + G
Sbjct: 95 AAHLPLDAHEEVGNNFVLARELGLVDLTPWDVGVKGRFPQPTPLLQVADRLGQLTG 150
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, enterococcus faecalis V583, PSI, protein
structure initiative; HET: MSE; 2.26A {Enterococcus
faecalis} SCOP: c.77.1.4
Length = 336
Score = 26.7 bits (60), Expect = 5.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 84 EGRTMLKNFLFD--VC-GLTGNFTLKSRE---EELIKYVKETVGNMKVLVRKLG 131
E R +L + D V G TGN LKS E ++ +K + + + + K+G
Sbjct: 213 EARELLNG-VADVVVTDGFTGNAVLKSIEGTAMNMMSLLKTAILS-EGVKGKMG 264
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 26.3 bits (58), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 150 GLAIRVICGEERYIEKDYSETQVLVKIIVEYDQM 183
G RVI +E+ E++ +E ++VKI VE+
Sbjct: 154 GAVNRVIIYQEKQGEEEDAE--IIVKIFVEFSIA 185
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2
project, S2F, structural genomics, unknown function;
2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Length = 247
Score = 26.1 bits (58), Expect = 7.5
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 6/31 (19%)
Query: 17 TLRPDLIESASHLASNKADVIKTHHNDSPLI 47
T L++ A AD + HH
Sbjct: 43 TASQALLDEA---VRLGADAVIVHH---GYF 67
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 25.8 bits (56), Expect = 9.7
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 52 EQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG---LTGNFTLKSR 108
G + L+ K G + H + + G +++ + G G
Sbjct: 119 YPGTTLYSLEKALKP----LGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAY---- 170
Query: 109 EEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM 142
E+ + + LV LG+DLG TPE ++
Sbjct: 171 -TEMSLFARINEDGKLTLVNHLGIDLGETPEQIL 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.404
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,053,764
Number of extensions: 186371
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 57
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)