RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7151
(188 letters)
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
[TaxId: 562]}
Length = 205
Score = 56.5 bits (135), Expect = 8e-11
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTG 101
+E R YG+QFHPEV T +G ML+ F+ D+C
Sbjct: 166 MANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEA 204
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 51.0 bits (121), Expect = 6e-09
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
D R+ G QFHPE LT G +L+ L
Sbjct: 156 VRDDRRRVCGFQFHPESILTTHGARLLEQTL 186
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 50.7 bits (120), Expect = 1e-08
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV 96
H +E +YG+QFHPE T+ G +L NFL V
Sbjct: 162 IHHEEYPIYGVQFHPESVGTSLGYKILYNFLNRV 195
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 49.2 bits (116), Expect = 3e-08
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 27 SHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD-----FHKDELRLYGLQFHPEVDL 81
+ +K + ++ L + K++ + +EL +YG+QFHPEV
Sbjct: 112 DEIFKGLPKRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEELPIYGVQFHPEVAH 171
Query: 82 TNEGRTMLKNFLFDVCG 98
T +G +L+NF +CG
Sbjct: 172 TEKGEEILRNFA-KLCG 187
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 48.0 bits (113), Expect = 8e-08
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 23 IESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD-----FHKDELRLYGLQFHP 77
+ + ++ I N + I L + + F+ +Y QFHP
Sbjct: 109 VMHSENIFGGLPSEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKTRPIYATQFHP 168
Query: 78 EVDLTNEGRTMLKNFLFDVCG 98
EV+ T GR + +NF+ +C
Sbjct: 169 EVEHTQYGRDIFRNFI-GICA 188
>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
small subunit C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 228
Score = 41.7 bits (97), Expect = 2e-05
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 63 FHKDELRLYGLQFHPEVDLT-NEGRTMLKNFL 93
H+ + + Q +PE ++ + +F+
Sbjct: 188 IHRTDKPAFSFQGNPEASPGPHDAAPLFDHFI 219
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 36.9 bits (84), Expect = 6e-04
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
K R+ G QFHPE + GR +L+ +
Sbjct: 167 VRKG--RILGFQFHPEKS-SKIGRKLLEKVI 194
>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 232
Score = 36.8 bits (84), Expect = 7e-04
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 70 LYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREE 110
++ QFHPE G +++NFL N++ + +E
Sbjct: 190 IFATQFHPEKSGKA-GLNVIENFLKQQSPPIPNYSAEEKEL 229
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 36.6 bits (83), Expect = 7e-04
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 124 KVLVRKLGLDLGLTPEVVMRHPFP 147
K VRK+GL+LGL +++ RHPFP
Sbjct: 174 KDEVRKIGLELGLPYDMLYRHPFP 197
Score = 29.3 bits (64), Expect = 0.18
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 28 HLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELR 69
A+ KA VIK+HHN L + + + ++EPLK+ KDE+R
Sbjct: 139 ASATGKAHVIKSHHNVGGLPKEM--KMGLVEPLKELFKDEVR 178
Score = 28.1 bits (61), Expect = 0.59
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 104 TLKSREEELIKYVKETVGNMKVLV 127
T ++ + ++E VG+ KV++
Sbjct: 2 TPAKIIDDAVARIREQVGDDKVIL 25
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 195
Score = 36.2 bits (82), Expect = 0.001
Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 3/31 (9%)
Query: 63 FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
K+ L QFHPE G L
Sbjct: 165 LAKE--NLLAPQFHPEKSGKA-GLAFLALAR 192
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 202
Score = 34.9 bits (79), Expect = 0.003
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFL 93
+ G FHPE+ + +++ FL
Sbjct: 168 QFLGCSFHPELT---DDHRLMQYFL 189
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus
subtilis [TaxId: 1423]}
Length = 195
Score = 34.1 bits (77), Expect = 0.006
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFL 93
+ G FHPE+ E + + F+
Sbjct: 163 QFLGCSFHPELT---EDHRVTQLFV 184
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 288
Score = 32.2 bits (72), Expect = 0.028
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 15/76 (19%)
Query: 56 VIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTM--------------LKNFLFDVCGLTG 101
IE + + +YG+Q+HPE L F +
Sbjct: 194 KIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNN 253
Query: 102 NFTLKSREEELIKYVK 117
+ KS EE +
Sbjct: 254 H-HFKSESEEEKALIY 268
>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 218
Score = 31.0 bits (69), Expect = 0.067
Identities = 7/25 (28%), Positives = 8/25 (32%), Gaps = 3/25 (12%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFL 93
G FHPE L + F
Sbjct: 188 NCLGTVFHPE--LLPHTA-FQQYFY 209
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga
maritima [TaxId: 2336]}
Length = 230
Score = 26.9 bits (58), Expect = 1.5
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 69 RLYGLQFHPEVDLTNEGRTMLKNFL 93
+ GLQFH EV +K ++
Sbjct: 169 KAVGLQFHIEVG-----ARTMKRWI 188
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 26.8 bits (58), Expect = 2.0
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 38 KTHHNDSPLIRALREQGKVIEPLK-DFHKDELR 69
T L+R L EQG P D LR
Sbjct: 45 DTADLSYSLVRVLDEQGDAQGPWAEDIDPQILR 77
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation
domain {Escherichia coli [TaxId: 562]}
Length = 121
Score = 25.1 bits (55), Expect = 3.3
Identities = 8/12 (66%), Positives = 10/12 (83%), Gaps = 1/12 (8%)
Query: 148 GPGLAIRVICGE 159
GPGL +RV+ GE
Sbjct: 1 GPGLGVRVL-GE 11
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 24.7 bits (53), Expect = 6.4
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 23 IESASHLASNKADVIKTHHNDSPLIRALRE 52
+ S + +A ++++ N S ++ A+ E
Sbjct: 138 MGSGTAVAKTASEMVLADDNFSTIVAAVEE 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.140 0.404
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,428
Number of extensions: 34810
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 25
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)