BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7153
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 173 bits (438), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 99/125 (79%)
Query: 3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
E+ L P + L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct: 358 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 417
Query: 63 FHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYD 122
FHKDEVR LG +LGL E+V RHPFPGPGLAIRVIC EE YI KD+ ET ++KI+ ++
Sbjct: 418 FHKDEVRILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFS 477
Query: 123 QMFKK 127
KK
Sbjct: 478 ASVKK 482
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 78/109 (71%), Gaps = 8/109 (7%)
Query: 2 EELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLK 61
E LKL+ + L QGT+ PD+IESA+ A+ KA VIK+HHN L + ++ ++EPLK
Sbjct: 322 EALKLE-DVKWLAQGTIYPDVIESAAS-ATGKAHVIKSHHNVGGLPKEMKM--GLVEPLK 377
Query: 62 DFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSE 110
+ KDEVRK+GL+LGL +++ RHPFPGPGL +RV+ GE ++K+Y +
Sbjct: 378 ELFKDEVRKIGLELGLPYDMLYRHPFPGPGLGVRVL-GE---VKKEYCD 422
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 65/97 (67%), Gaps = 3/97 (3%)
Query: 1 MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
EE N L QGT+ PD+IESA + K +IKTHHN L L + K+IEPL
Sbjct: 322 FEEQAKKLNVKWLGQGTIYPDVIESAK-TKTGKGHIIKTHHNVGGL--PLNMELKLIEPL 378
Query: 61 KDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 97
++ KDEVRKLGL+LGL +++ RHPFPGPGLAIR++
Sbjct: 379 RELFKDEVRKLGLELGLPADLIYRHPFPGPGLAIRIL 415
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 90.1 bits (222), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/97 (49%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 1 MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
+ + +D N+T L QGTL PD+IES + N +D IKTHHN L + L+ K+ EP
Sbjct: 352 VNNIDIDINKTFLLQGTLYPDIIESKC--SKNLSDTIKTHHNVGGLPKNLK--FKLFEPF 407
Query: 61 KDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 97
K KD+V+ L +L L E+ RHPFPGPGLAIRVI
Sbjct: 408 KYLFKDDVKTLSRELNLPEEITNRHPFPGPGLAIRVI 444
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 75.5 bits (184), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/93 (49%), Positives = 59/93 (63%), Gaps = 7/93 (7%)
Query: 12 LLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKL 71
L QGTL PD+IESA + K IK+HHN L L + +++EP + KDEVR+L
Sbjct: 311 FLAQGTLYPDVIESAGGHGAAK---IKSHHNVGGLPEDL--EFELLEPFRLLFKDEVREL 365
Query: 72 GLDLGLTPEVVMRHPFPGPGLAIRVI--CGEER 102
L LGL + +RHPFPGPGLA+RV+ EER
Sbjct: 366 ALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEER 398
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 75.5 bits (184), Expect = 7e-15, Method: Composition-based stats.
Identities = 46/93 (49%), Positives = 59/93 (63%), Gaps = 7/93 (7%)
Query: 12 LLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKL 71
L QGTL PD+IESA + K IK+HHN L L + +++EP + KDEVR+L
Sbjct: 311 FLAQGTLYPDVIESAGGHGAAK---IKSHHNVGGLPEDL--EFELLEPFRLLFKDEVREL 365
Query: 72 GLDLGLTPEVVMRHPFPGPGLAIRVI--CGEER 102
L LGL + +RHPFPGPGLA+RV+ EER
Sbjct: 366 ALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEER 398
>pdb|2DPL|A Chain A, Crystal Structure Of The Gmp Synthase From Pyrococcus
Horikoshii Ot3
pdb|2DPL|B Chain B, Crystal Structure Of The Gmp Synthase From Pyrococcus
Horikoshii Ot3
pdb|3A4I|A Chain A, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
Horikoshii Ot3
pdb|3A4I|B Chain B, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
Horikoshii Ot3
Length = 308
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 1 MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
EE+ L QGT+ PD IES IK+HHN L L K+IEPL
Sbjct: 112 FEEVAKKIGAEYLIQGTIAPDWIESQGK--------IKSHHNVGGLPEKLNL--KLIEPL 161
Query: 61 KDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 97
+D +KDEVR+L LGL ++ R PFPGPGLA+RVI
Sbjct: 162 RDLYKDEVRELAKFLGLPEKIYNRMPFPGPGLAVRVI 198
>pdb|4HL0|A Chain A, Crystal Structure Of Full-length Toxascaris Leonina
Galectin
pdb|4HL0|B Chain B, Crystal Structure Of Full-length Toxascaris Leonina
Galectin
Length = 278
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 6 LDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-EQGKVIEPLKDFH 64
+P QTL+ +G D + +L + AD ND PL ++R ++GK++ F
Sbjct: 19 FEPGQTLIIKGKTAEDSVRFTINLHNTSADF---SGNDVPLHISVRFDEGKIV--FNTFS 73
Query: 65 KDEVRK 70
K E K
Sbjct: 74 KGEWGK 79
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 11 TLLCQGTLRPDLIESASHLA 30
TL+C GT+ P+++++A+ LA
Sbjct: 206 TLICYGTVMPEVLQAAAELA 225
>pdb|1OJQ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus
pdb|1OJZ|A Chain A, The Crystal Structure Of C3stau2 From S. Aureus In With
Nad
Length = 212
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 21 DLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKL--GLDLGLT 78
LI+SA + + +K + N SP+ LR + L + +++VR+L + +T
Sbjct: 18 SLIKSAKYSSKDKMAIYNYTKNSSPINTPLRSANGDVNKLSENIQEQVRQLDSTISKSVT 77
Query: 79 PEVV 82
P+ V
Sbjct: 78 PDSV 81
>pdb|2O7T|A Chain A, Crystal Structure Of A Tetr Family Transcriptional
Regulator (Ncgl1578, Cgl1640) From Corynebacterium
Glutamicum At 2.10 A Resolution
Length = 199
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 19 RPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKV 56
R D ++ H+ + ++ +THH+DS + EQ V
Sbjct: 3 RADALKRREHIITTTCNLYRTHHHDSLTXENIAEQAGV 40
>pdb|1RZW|A Chain A, The Solution Structure Of The Archaeglobus Fulgidis
Protein Af2095. Northeast Structural Genomics Consortium
Target Gr4
pdb|3ERJ|A Chain A, Crystal Structure Of The Peptidyl-Trna Hydrolase Af2095
From Archaeglobus Fulgidis. Northeast Structural
Genomics Consortium Target Gr4
pdb|3ERJ|B Chain B, Crystal Structure Of The Peptidyl-Trna Hydrolase Af2095
From Archaeglobus Fulgidis. Northeast Structural
Genomics Consortium Target Gr4
Length = 123
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 17 TLRPDLIESASHLASN--KADVIKTHHNDSPLIRALREQG--KVIEPLKDFH-----KDE 67
+R DL S LA A +I +DS L R ++G KV+ +K K +
Sbjct: 8 VVRDDLKLSRGKLAVQVAHAAIIGYLKSDSSLRRKWLDEGQKKVVLKVKSLEELLGIKHK 67
Query: 68 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEK 106
LGL GL + + PG A+ + EER I+K
Sbjct: 68 AESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDK 106
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 25.8 bits (55), Expect = 7.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The
Phosphorylation Loop Conformation In The Bckd Machine
Length = 400
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The
Phosphorylation Loop Conformation In The Bckd Machine
Length = 400
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The
Phosphorylation Loop Conformation In The Bckd Machine
Length = 400
Score = 25.8 bits (55), Expect = 7.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The
Phosphorylation Loop Conformation In The Bckd Machine
Length = 400
Score = 25.8 bits (55), Expect = 7.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 25.8 bits (55), Expect = 7.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 45 PLIRALREQGKVIEPLKDFH--KDEVRKL 71
P+ R + QG++I P +D H K++V KL
Sbjct: 32 PIYRVMDRQGQIINPSEDPHLPKEKVLKL 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,292,417
Number of Sequences: 62578
Number of extensions: 173439
Number of successful extensions: 574
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 35
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)