Query psy7153
Match_columns 131
No_of_seqs 176 out of 598
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 19:33:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vxo_A GMP synthase [glutamine 99.9 1.4E-27 4.8E-32 214.0 8.7 122 4-125 359-480 (697)
2 3uow_A GMP synthetase; structu 99.9 9.4E-28 3.2E-32 209.2 3.4 105 11-119 362-466 (556)
3 1gpm_A GMP synthetase, XMP ami 99.9 1.3E-23 4.3E-28 181.1 4.4 109 9-121 328-437 (525)
4 2ywb_A GMP synthase [glutamine 99.8 5E-22 1.7E-26 170.1 2.5 108 9-121 308-415 (503)
5 3tqi_A GMP synthase [glutamine 99.8 8.3E-21 2.8E-25 163.9 5.0 108 9-119 330-437 (527)
6 2dpl_A GMP synthetase, GMP syn 99.8 2.9E-20 9.9E-25 150.8 5.5 102 9-120 120-221 (308)
7 1kqp_A NAD+ synthase, NH(3)-de 99.4 7.1E-14 2.4E-18 111.5 4.3 62 54-117 175-237 (271)
8 1wxi_A NH(3)-dependent NAD(+) 99.4 1.1E-13 3.7E-18 111.3 4.3 62 54-117 178-240 (275)
9 3q4g_A NH(3)-dependent NAD(+) 99.3 1.4E-12 4.8E-17 106.1 5.7 62 54-117 187-249 (279)
10 3fiu_A NH(3)-dependent NAD(+) 99.3 2.1E-12 7.2E-17 102.3 5.3 59 54-117 160-219 (249)
11 3p52_A NH(3)-dependent NAD(+) 99.3 2.1E-12 7.1E-17 102.5 4.1 60 55-119 152-212 (249)
12 3dpi_A NAD+ synthetase; ssgcid 99.1 1.3E-11 4.5E-16 101.1 3.2 62 54-117 187-249 (285)
13 3ilv_A Glutamine-dependent NAD 99.1 1.2E-11 4E-16 109.0 2.7 62 55-122 478-549 (634)
14 3n05_A NH(3)-dependent NAD(+) 99.1 2.6E-11 8.9E-16 105.3 3.9 63 54-122 451-525 (590)
15 2e18_A NH(3)-dependent NAD(+) 99.0 2.7E-10 9.4E-15 88.7 5.6 63 54-121 147-210 (257)
16 1xng_A NH(3)-dependent NAD(+) 99.0 5.2E-10 1.8E-14 88.0 5.6 60 54-118 150-210 (268)
17 3sdb_A Glutamine-dependent NAD 98.9 1.9E-10 6.3E-15 102.6 0.7 66 56-124 502-581 (680)
18 4f4h_A Glutamine dependent NAD 98.7 3.5E-09 1.2E-13 92.4 2.8 63 55-123 432-505 (565)
19 3bl5_A Queuosine biosynthesis 96.8 0.00072 2.5E-08 49.7 2.8 37 53-89 151-187 (219)
20 2c5s_A THII, probable thiamine 96.2 0.0012 4.2E-08 55.2 1.4 65 9-90 290-354 (413)
21 2hma_A Probable tRNA (5-methyl 95.3 0.014 4.7E-07 48.5 4.0 76 9-89 123-201 (376)
22 2der_A TRNA-specific 2-thiouri 93.7 0.028 9.6E-07 46.9 2.3 76 9-89 132-209 (380)
23 2pg3_A Queuosine biosynthesis 91.3 0.088 3E-06 39.5 2.1 37 53-89 154-193 (232)
24 3k32_A Uncharacterized protein 89.5 0.58 2E-05 34.9 5.2 55 9-78 101-155 (203)
25 1sur_A PAPS reductase; assimil 88.0 0.34 1.2E-05 35.9 3.0 37 55-91 176-212 (215)
26 1vl2_A Argininosuccinate synth 85.1 0.31 1.1E-05 41.9 1.6 29 53-81 148-183 (421)
27 1vbk_A Hypothetical protein PH 85.1 0.27 9.4E-06 39.6 1.2 24 54-77 284-307 (307)
28 1wy5_A TILS, hypothetical UPF0 78.5 1.1 3.9E-05 35.4 2.5 26 54-79 163-188 (317)
29 1k92_A Argininosuccinate synth 77.7 1.2 4.2E-05 38.6 2.7 35 53-87 149-190 (455)
30 1kor_A Argininosuccinate synth 74.7 1.6 5.3E-05 36.7 2.5 34 53-86 135-171 (400)
31 3a2k_A TRNA(Ile)-lysidine synt 63.4 4 0.00014 34.3 2.6 26 54-79 161-186 (464)
32 2nz2_A Argininosuccinate synth 60.7 4.5 0.00015 34.2 2.5 27 54-80 140-173 (413)
33 2o8v_A Phosphoadenosine phosph 60.3 5.8 0.0002 30.4 2.9 34 55-88 177-210 (252)
34 1ni5_A Putative cell cycle pro 60.2 4.3 0.00015 33.8 2.3 26 54-79 150-175 (433)
35 2p7n_A Pathogenicity island 1 57.8 11 0.00036 32.9 4.3 48 65-119 280-328 (407)
36 1ym5_A YHI9, hypothetical 32.6 44.4 19 0.00066 28.1 3.6 44 62-105 35-80 (300)
37 2goy_A Adenosine phosphosulfat 39.2 22 0.00076 27.6 3.1 33 55-87 191-223 (275)
38 1xub_A Phenazine biosynthesis 38.7 25 0.00086 27.4 3.4 44 62-105 48-92 (298)
39 1tc3_C Protein (TC3 transposas 38.4 13 0.00045 19.8 1.3 17 68-84 24-40 (51)
40 2h3j_A Hypothetical protein PA 35.9 13 0.00044 23.1 1.1 29 69-98 28-56 (75)
41 2da7_A Zinc finger homeobox pr 35.6 21 0.00073 24.1 2.2 22 62-83 29-50 (71)
42 1sfu_A 34L protein; protein/Z- 34.1 13 0.00043 25.3 0.8 18 68-85 32-49 (75)
43 2k4y_A FEOA-like protein; GFT 33.3 12 0.00042 24.4 0.7 31 68-99 31-61 (86)
44 2oq2_A Phosphoadenosine phosph 32.7 27 0.00091 26.9 2.6 30 56-85 183-212 (261)
45 4dun_A Putative phenazine bios 32.5 18 0.00062 28.4 1.7 42 62-105 30-72 (263)
46 2wsi_A FAD synthetase; transfe 30.3 26 0.0009 27.9 2.3 32 56-87 190-221 (306)
47 2k5l_A FEOA; structure, NESG, 30.1 15 0.00053 23.6 0.7 30 69-99 29-58 (81)
48 2lx9_A Ferrous iron transport 29.1 11 0.00037 24.9 -0.1 30 69-99 27-56 (83)
49 1zun_A Sulfate adenylyltransfe 29.0 28 0.00096 28.1 2.3 28 56-83 201-228 (325)
50 2glo_A Brinker CG9653-PA; prot 28.9 23 0.00079 21.1 1.4 17 68-84 28-44 (59)
51 2heo_A Z-DNA binding protein 1 28.3 22 0.00076 22.1 1.2 18 68-85 28-45 (67)
52 1qgp_A Protein (double strande 28.0 17 0.0006 23.5 0.7 18 67-84 33-50 (77)
53 1qya_A ORFB, hypothetical prot 28.0 44 0.0015 26.0 3.1 44 62-106 39-83 (307)
54 2cqy_A Propionyl-COA carboxyla 27.6 97 0.0033 19.2 4.3 31 65-97 34-64 (108)
55 1jko_C HIN recombinase, DNA-in 27.1 23 0.0008 19.2 1.1 17 68-84 24-40 (52)
56 1oyi_A Double-stranded RNA-bin 27.0 19 0.00064 24.5 0.8 18 68-85 33-50 (82)
57 3oq9_A Tumor necrosis factor r 26.8 25 0.00087 23.9 1.4 26 64-89 11-40 (86)
58 3edn_A Phenazine biosynthesis 25.6 55 0.0019 25.3 3.3 43 62-105 30-73 (299)
59 2k5f_A Ferrous iron transport 23.7 28 0.00095 24.0 1.2 42 69-114 28-69 (105)
60 2gke_A DAP epimerase, diaminop 23.6 47 0.0016 25.3 2.5 45 62-106 24-72 (274)
61 1u0k_A Gene product PA4716; sc 23.4 47 0.0016 25.6 2.5 45 62-106 31-76 (288)
62 1wh5_A ZF-HD homeobox family p 23.0 54 0.0018 21.3 2.4 23 60-82 43-65 (80)
63 3nau_A Zinc fingers and homeob 22.9 53 0.0018 21.5 2.3 25 58-82 24-48 (66)
64 1ig7_A Homeotic protein MSX-1; 22.8 58 0.002 19.1 2.4 22 61-82 23-44 (58)
65 3a03_A T-cell leukemia homeobo 22.7 57 0.0019 19.3 2.3 22 61-82 20-41 (56)
66 1qbj_A Protein (double-strande 22.4 25 0.00086 23.2 0.7 18 68-85 30-47 (81)
67 1s7j_A Phenazine biosynthesis 22.0 39 0.0013 25.8 1.8 42 62-105 29-71 (262)
68 2da3_A Alpha-fetoprotein enhan 21.9 54 0.0018 20.5 2.2 22 61-82 40-61 (80)
69 2x48_A CAG38821; archeal virus 21.4 37 0.0013 19.4 1.2 17 68-84 34-50 (55)
70 2e19_A Transcription factor 8; 21.0 62 0.0021 20.1 2.3 27 57-83 22-48 (64)
71 2dmq_A LIM/homeobox protein LH 21.0 63 0.0022 20.3 2.4 23 60-82 29-51 (80)
72 2ecc_A Homeobox and leucine zi 21.0 62 0.0021 21.5 2.4 22 61-82 26-47 (76)
73 1wh7_A ZF-HD homeobox family p 20.9 62 0.0021 21.1 2.4 22 61-82 44-65 (80)
74 1jgg_A Segmentation protein EV 20.9 61 0.0021 19.3 2.2 22 61-82 24-45 (60)
75 3rkq_A Homeobox protein NKX-2. 20.7 63 0.0021 18.7 2.2 21 62-82 26-46 (58)
76 2hdd_A Protein (engrailed home 20.7 63 0.0021 19.3 2.2 22 61-82 26-47 (61)
77 3a02_A Homeobox protein arista 20.6 64 0.0022 19.2 2.3 21 62-82 23-43 (60)
78 2dmu_A Homeobox protein goosec 20.3 63 0.0021 19.9 2.2 22 61-82 30-51 (70)
79 1s3c_A Arsenate reductase; ARS 20.3 65 0.0022 22.9 2.6 56 63-128 39-95 (141)
80 1akh_A Protein (mating-type pr 20.1 64 0.0022 19.1 2.2 22 61-82 28-49 (61)
No 1
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=214.00 Aligned_cols=122 Identities=66% Similarity=1.078 Sum_probs=107.1
Q ss_pred CCCCCCCceeeccccccceeeccCCCCCCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCChhhhc
Q psy7153 4 LKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVM 83 (131)
Q Consensus 4 ~~~~~~~~~l~QGTiypD~iES~~~~~~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~ 83 (131)
++.+.+..||+|||.|||+|||......+.+++||+|||+++++..+...+++++||++|+|+|||++|++||+|.++++
T Consensus 359 ~g~~~~~~~LatG~~~~D~iEs~~~~l~~g~~~iks~~nv~g~~~~~~~~~~~i~PL~~L~K~EVr~la~~lGlP~~i~~ 438 (697)
T 2vxo_A 359 MNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGLPEELVS 438 (697)
T ss_dssp TCCCTTSEEEECCCSSCCSBCCHHHHHHSCCCGGGSCCSSCHHHHHHHHTTCEECGGGGSCHHHHHHHHHHTTCCHHHHT
T ss_pred cCCCcccEEEEEeccChhhhhhhhhhhhcCccccccccccchhhHHhccCCEEEEecccCCHHHHHHHHHHcCCCcceee
Confidence 34444566999999999999997533234578899999999999988765689999999999999999999999999999
Q ss_pred cCCCCCCCceeeeccCcccccccChHHHHHHHHHHHhhhhhh
Q psy7153 84 RHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMF 125 (131)
Q Consensus 84 k~PfpGPGLaiR~~g~~e~~l~~~y~~~d~iL~~~~~~~~~~ 125 (131)
|+|||||||++|+.+.+|.++|.+|+++|.+|+...++....
T Consensus 439 r~Ps~gpgL~~r~~~~de~~~g~~Y~~ld~iL~~~~~~~~el 480 (697)
T 2vxo_A 439 RHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSASV 480 (697)
T ss_dssp CCCCCTTGGGGGBCCBSSCCCCTTHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCccccCccccchhhhcCCHHHHHHHHHHHhhhHHHH
Confidence 999999999999998899999999999999999988755554
No 2
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.93 E-value=9.4e-28 Score=209.16 Aligned_cols=105 Identities=45% Similarity=0.615 Sum_probs=73.1
Q ss_pred ceeeccccccceeeccCCCCCCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCChhhhccCCCCCC
Q psy7153 11 TLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGP 90 (131)
Q Consensus 11 ~~l~QGTiypD~iES~~~~~~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGP 90 (131)
.|++|||+|||++||.... +.+++||||||++++|..+ .+++++||++|+|+|||++|++||||.++++|+|||||
T Consensus 362 ~~la~Gt~y~D~ies~~~~--g~~~~iks~~n~~gl~~~~--~~~li~PL~~l~K~EVr~la~~lGlp~~~~~r~P~p~p 437 (556)
T 3uow_A 362 TFLLQGTLYPDIIESKCSK--NLSDTIKTHHNVGGLPKNL--KFKLFEPFKYLFKDDVKTLSRELNLPEEITNRHPFPGP 437 (556)
T ss_dssp EEEECCCCHHHHHHHSCC---------------------C--CCEEECTTTTCCHHHHHHHHHTTTCCHHHHHCCCCCTT
T ss_pred cccccCccChHHHhhcccc--cccceeccccccccccccc--ccceEeecccCcHHHHHHHHHHcCCCHHHhCCCCCCCC
Confidence 7999999999999998643 3588999999999999877 46899999999999999999999999999999999999
Q ss_pred CceeeeccCcccccccChHHHHHHHHHHH
Q psy7153 91 GLAIRVICGEERYIEKDYSETQVLVKIIV 119 (131)
Q Consensus 91 GLaiR~~g~~e~~l~~~y~~~d~iL~~~~ 119 (131)
|||+||+|+-.+|-..--++.|.|+..-+
T Consensus 438 ~la~Ri~g~it~e~l~~~~~a~~~~~~~~ 466 (556)
T 3uow_A 438 GLAIRVIGEINKHKLNILREVDDIFINDL 466 (556)
T ss_dssp TTTTTBCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCccCHHHHHHHHHHHHHHHHHH
Confidence 99999999654444444556666665544
No 3
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.88 E-value=1.3e-23 Score=181.06 Aligned_cols=109 Identities=42% Similarity=0.716 Sum_probs=77.3
Q ss_pred CCceeeccccccceeeccCCCCCCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCChhhhccCCCC
Q psy7153 9 NQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFP 88 (131)
Q Consensus 9 ~~~~l~QGTiypD~iES~~~~~~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~Pfp 88 (131)
+..+|+|||.|||++||.+.. .+.+++||+|||++++|..+. +++++||.+|+|+|||++|+++|+|+++++|+|||
T Consensus 328 g~~~l~~Gt~~~D~~E~~~~~-~~~s~~iks~~~l~gl~~~~~--~~~i~PL~~l~K~EVr~la~~lglp~~i~~~~P~~ 404 (525)
T 1gpm_A 328 DVKWLAQGTIYPDVIESAASA-TGKAHVIKSHHNVGGLPKEMK--MGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPFP 404 (525)
T ss_dssp SEEEEECCCCHHHHHHTTC-----------------------C--CEEECTTTTCCHHHHHHHHHHTTCCHHHHTSCCCC
T ss_pred CCCEEEeCCCCcchhhhcCcc-ccccccccccccccccccccC--CcEEehhhcCCHHHHHHHHHHcCCCHHhcccCCCC
Confidence 457999999999999994211 235789999999999998763 58999999999999999999999999999999999
Q ss_pred CCCceeeeccCc-ccccccChHHHHHHHHHHHhh
Q psy7153 89 GPGLAIRVICGE-ERYIEKDYSETQVLVKIIVEY 121 (131)
Q Consensus 89 GPGLaiR~~g~~-e~~l~~~y~~~d~iL~~~~~~ 121 (131)
||||++||.|+. +..+ ..|++.|.+|+..+..
T Consensus 405 ~p~La~ri~g~~t~~~l-~~~~~~d~~l~~~l~~ 437 (525)
T 1gpm_A 405 GPGLGVRVLGEVKKEYC-DLLRRADAIFIEELRK 437 (525)
T ss_dssp TTGGGGTBCSSCCHHHH-HHHHHHHHHHHHHHHH
T ss_pred chhhcccccCCcCHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999996 5444 5899999999887643
No 4
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.83 E-value=5e-22 Score=170.08 Aligned_cols=108 Identities=40% Similarity=0.580 Sum_probs=80.3
Q ss_pred CCceeeccccccceeeccCCCCCCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCChhhhccCCCC
Q psy7153 9 NQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFP 88 (131)
Q Consensus 9 ~~~~l~QGTiypD~iES~~~~~~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~Pfp 88 (131)
+..+++|||.|+|++|++.. +.+++||+|||+++++..+ ..++++||.+++|+|||++|+++|+|..+++|+|||
T Consensus 308 g~~~la~G~~~~D~~Et~~~---g~~~~iks~~~l~~l~~~~--~~~ii~PL~~l~K~EVr~~a~~~glp~~i~~~~P~~ 382 (503)
T 2ywb_A 308 PFRFLAQGTLYPDVIESAGG---HGAAKIKSHHNVGGLPEDL--EFELLEPFRLLFKDEVRELALLLGLPDTLRLRHPFP 382 (503)
T ss_dssp CCSEEECCCCHHHHHC--------------------CCCSSC--CCEEECTTTTCCHHHHHHHHHHTTCCHHHHSCCCCC
T ss_pred CCCEEEECCcCccchhhccC---Ccccccccccccccccccc--cCceEehhhcCCHHHHHHHHHHcCCChhheecCCCC
Confidence 45699999999999999642 3478999999999998755 357999999999999999999999999999999999
Q ss_pred CCCceeeeccCcccccccChHHHHHHHHHHHhh
Q psy7153 89 GPGLAIRVICGEERYIEKDYSETQVLVKIIVEY 121 (131)
Q Consensus 89 GPGLaiR~~g~~e~~l~~~y~~~d~iL~~~~~~ 121 (131)
|||||+||+|+...+.-..|.+.|.+|..-+..
T Consensus 383 ~~~La~R~~g~~t~~~l~~~~~~d~~l~~~l~~ 415 (503)
T 2ywb_A 383 GPGLAVRVLGEVTEERLEILRRADDIFTSLLRE 415 (503)
T ss_dssp TTGGGGGBSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhccccccHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987555555899999998776654
No 5
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.81 E-value=8.3e-21 Score=163.87 Aligned_cols=108 Identities=44% Similarity=0.691 Sum_probs=71.7
Q ss_pred CCceeeccccccceeeccCCCCCCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCChhhhccCCCC
Q psy7153 9 NQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFP 88 (131)
Q Consensus 9 ~~~~l~QGTiypD~iES~~~~~~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~Pfp 88 (131)
+..+++|||.|+|++||.... .+.+.+||+|||+++++..+. .++++||.+|+|+|||++|+.+|+|.++++++|||
T Consensus 330 g~~~la~Gh~~dD~~Et~~~~-~g~~~~ik~~~~l~gl~~~~~--~~iirPL~~l~K~EIr~~a~~lGlp~~~v~~~P~p 406 (527)
T 3tqi_A 330 NVKWLGQGTIYPDVIESAKTK-TGKGHIIKTHHNVGGLPLNME--LKLIEPLRELFKDEVRKLGLELGLPADLIYRHPFP 406 (527)
T ss_dssp TCCEEECCCCHHHHHCC-----------------------------CEECTTTTCCHHHHHHHHHHHTCCHHHHTCCCCC
T ss_pred CCCEEEccccCCccccccccC-CChhheeeeecccccCccccc--CccccchhcCCHHHHHHHHHHcCCChhhhccCCCC
Confidence 567999999999999997432 234678999999999998764 57999999999999999999999999999999999
Q ss_pred CCCceeeeccCcccccccChHHHHHHHHHHH
Q psy7153 89 GPGLAIRVICGEERYIEKDYSETQVLVKIIV 119 (131)
Q Consensus 89 GPGLaiR~~g~~e~~l~~~y~~~d~iL~~~~ 119 (131)
||||++|+.|+...+.-....+.+.++...+
T Consensus 407 ~~~l~~R~~g~vt~e~l~~~~~ae~i~~~~l 437 (527)
T 3tqi_A 407 GPGLAIRILGEVSAEYINILKQADAIFIEEL 437 (527)
T ss_dssp TTGGGSSBCSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCcceecCCccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999655555556667777665443
No 6
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=99.80 E-value=2.9e-20 Score=150.81 Aligned_cols=102 Identities=46% Similarity=0.622 Sum_probs=67.5
Q ss_pred CCceeeccccccceeeccCCCCCCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCChhhhccCCCC
Q psy7153 9 NQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFP 88 (131)
Q Consensus 9 ~~~~l~QGTiypD~iES~~~~~~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~Pfp 88 (131)
+..++++||.|+|++|+.+ .||+|||++++++... .+++.||.+++|+|||++|+.+|+|..+++|+|||
T Consensus 120 g~~~la~Gh~~dD~~Et~~--------~iks~~~~~~l~~~~~--~~virPL~~l~K~EI~~~a~~~glp~~i~~~~P~~ 189 (308)
T 2dpl_A 120 GAEYLIQGTIAPDWIESQG--------KIKSHHNVGGLPEKLN--LKLIEPLRDLYKDEVRELAKFLGLPEKIYNRMPFP 189 (308)
T ss_dssp TCSEEECCCCCC-----------------------------CC--CEEECTTTTCCHHHHHHHHHHTTCCHHHHTCCCCC
T ss_pred CcCEEEECCCCccchhhcc--------chhhhhccccCCccCC--CeEEEEcccCCHHHHHHHHHHhCCCceeeecCCCC
Confidence 3469999999999999964 6999999999987653 57999999999999999999999999999999999
Q ss_pred CCCceeeeccCcccccccChHHHHHHHHHHHh
Q psy7153 89 GPGLAIRVICGEERYIEKDYSETQVLVKIIVE 120 (131)
Q Consensus 89 GPGLaiR~~g~~e~~l~~~y~~~d~iL~~~~~ 120 (131)
||||++|+.|+...+....+.+.+.+|..-.+
T Consensus 190 ~~~La~R~~g~~t~~~l~~~r~~~~~l~~~~~ 221 (308)
T 2dpl_A 190 GPGLAVRVIGEVTPEKIRIVREANAIVEEEVE 221 (308)
T ss_dssp TTGGGGGBSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999997544444556666666655443
No 7
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=99.42 E-value=7.1e-14 Score=111.52 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=57.6
Q ss_pred ccccccccccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHH
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKI 117 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~ 117 (131)
.+++.||++|+|+|||+||++||+|+++++|+|||| |+=|+.||. |.++|++|+++|.+|+.
T Consensus 175 ~~~~~Pl~~l~K~eVr~la~~lglp~~i~~k~psa~--L~~~~~~q~De~~lg~~Y~~ld~~l~~ 237 (271)
T 1kqp_A 175 GADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTAD--LLDEKPQQSDETELGISYDEIDDYLEG 237 (271)
T ss_dssp CCSBCTTTTCCHHHHHHHHHHTTCCTHHHHSCCBCC--CCSSSTTCBHHHHHSSCHHHHHHHHTT
T ss_pred cccccccccCCHHHHHHHHHHcCCCHhhccCCCCcc--cccCCCCCCCHHHhCCCHHHHHHHHHh
Confidence 469999999999999999999999999999999999 977677996 99999999999999964
No 8
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=99.41 E-value=1.1e-13 Score=111.26 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=46.7
Q ss_pred ccccccccccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHH
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKI 117 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~ 117 (131)
.+++.||++|+|+|||+||++||+|++|++|+|||| |+=++.||. |.++|++|+++|.+|+.
T Consensus 178 ~~~~~PL~~l~K~eVr~la~~lglp~~i~~k~psa~--L~~~~~~q~De~~lg~~Y~~lD~~l~~ 240 (275)
T 1wxi_A 178 GTDINPLYRLNKRQGKQLLAALACPEHLYKKAPTAD--LEDDRPSLPDEVALGVTYDNIDDYLEG 240 (275)
T ss_dssp CCSBCTTTTCCHHHHHHHHHHTTCCGGGTSCC---------------CHHHHSSCHHHHHHHHTT
T ss_pred ccceeeccCCCHHHHHHHHHHhCCcHhhccCCCCCc--ccCCCCCCCCHHHhCCCHHHHHHHHHh
Confidence 469999999999999999999999999999999999 877667995 99999999999999964
No 9
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=99.32 E-value=1.4e-12 Score=106.13 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=47.3
Q ss_pred ccccccccccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHH
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKI 117 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~ 117 (131)
..++.||++|+|+|||+||++||+|++|++|+||++ |+=-+.||+ |.++|++|+++|.+|+.
T Consensus 187 ~~di~Pl~dl~Kt~Vr~LA~~lgiP~~i~~K~PSa~--L~~~~~~q~DE~~lg~~Y~~lD~~L~~ 249 (279)
T 3q4g_A 187 ACDLAPLFGLNKRQVRLLAKTLGAPEQLVYKTPTAD--LEELAPQKADEAALNLTYEQIDDFLEG 249 (279)
T ss_dssp CCSBCTTTTCCHHHHHHHHHHTTCCHHHHTCCCSCC--C-------------CCCHHHHHHHHHT
T ss_pred ccceeecCCCcHHHHHHHHHHhCCcHHHhcCCCCCC--cCCCCCCCCCHHHcCCCHHHHHHHHhc
Confidence 469999999999999999999999999999999999 731125885 99999999999999953
No 10
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=99.29 E-value=2.1e-12 Score=102.29 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=55.0
Q ss_pred ccccccccccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHH
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKI 117 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~ 117 (131)
..++.||.+|+|+|||+||+++|+|+++++|+||++ | |.||. |.++|++|+++|.+|+.
T Consensus 160 ~~~i~PL~~l~K~eVr~lA~~lglp~~i~~k~psa~--L---~~~q~de~~lg~~y~~ld~~l~~ 219 (249)
T 3fiu_A 160 AADILPLVNLKKSQVFELGKYLDVPKNILDKAPSAG--L---WQGQTDEDEMGVTYQEIDDFLDG 219 (249)
T ss_dssp CCSBCTTTTCCHHHHHHHHHHTTCCHHHHHSCCCCC--S---STTCCHHHHHTSCHHHHHHHHHT
T ss_pred CcceeecccCcHHHHHHHHHHcCCcHHHccCCCCCc--c---CCCCCCHHHcCCCHHHHHHHHhc
Confidence 359999999999999999999999999999999999 8 57896 99999999999999964
No 11
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=99.27 E-value=2.1e-12 Score=102.51 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=41.9
Q ss_pred cccccccccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHHHH
Q psy7153 55 KVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKIIV 119 (131)
Q Consensus 55 kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~~~ 119 (131)
.++.||.+|+|+|||++|+++|+|+++++|+|+++ | |.||. |.++|++|+++|.+|+.+.
T Consensus 152 ~~i~PL~~l~K~eV~~la~~~gip~~i~~k~psa~--L---~~~q~de~~lg~~y~~ld~~l~~~~ 212 (249)
T 3p52_A 152 CAFNPIGSLYKSEIYALAKYLNLHENFIKKAPSAD--L---WENQSDEADLGFSYTKIDEGLKALE 212 (249)
T ss_dssp CSEETTTTSCHHHHHHHHHHTTCCHHHHHC----------------------CCCCHHHHHHHHHH
T ss_pred CccccccCCcHHHHHHHHHHcCCcHHhcCCCCCcc--c---CCCCCCHHHcCCCHHHHHHHHHHcc
Confidence 58999999999999999999999999999999999 8 57895 9999999999999998764
No 12
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=99.14 E-value=1.3e-11 Score=101.08 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=53.5
Q ss_pred ccccccccccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHH
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKI 117 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~ 117 (131)
..++.||++|+|+|||+||++||+|++|++|+||++ |+==+.||+ |.++|++|+++|.+|+.
T Consensus 187 ~~~~~Pl~~l~K~eV~~la~~lg~p~~i~~k~pSa~--L~~l~~~q~DE~~lg~~Y~~lD~~L~~ 249 (285)
T 3dpi_A 187 GADVLPLAGLTKRRVRALARMLGADEPLVLKTPTAD--LETLRPQRPDEHAYGITYEQIDDFLEG 249 (285)
T ss_dssp CCSBCTTTTCCHHHHHHHHHHTTCCHHHHTCCCHHH--HGGGSCSCC--CCCCCCHHHHHHHHHT
T ss_pred ceeEeeecCCcHHHHHHHHHHcCCCHHHhcCCCCCC--cccCCCCCCcHHHcCCCHHHHHHHHcC
Confidence 369999999999999999999999999999999998 631124785 99999999999999963
No 13
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=99.14 E-value=1.2e-11 Score=108.99 Aligned_cols=62 Identities=18% Similarity=0.076 Sum_probs=43.7
Q ss_pred cccccccccchHHHHHHHHHc----CCC--hhhhccCCCCCCCceeeec---cCc-ccccccChHHHHHHHHHHHhhh
Q psy7153 55 KVIEPLKDFHKDEVRKLGLDL----GLT--PEVVMRHPFPGPGLAIRVI---CGE-ERYIEKDYSETQVLVKIIVEYD 122 (131)
Q Consensus 55 kdiePL~~L~KdEVR~Lg~~L----GlP--~~Ii~k~PfpGPGLaiR~~---g~~-e~~l~~~y~~~d~iL~~~~~~~ 122 (131)
.+++||++|+|+|||+||++| |+| ++|++|+|||| | +. +|+ |.++ .+|+++|.+|+..++..
T Consensus 478 ~~~~Pl~~l~KteVr~la~~l~~~~glp~l~~i~~k~pSae--L---~p~~~~q~de~~l-~~Y~~lD~~l~~~~~~~ 549 (634)
T 3ilv_A 478 GGIAPIAGVDKDFIRSWLRWAEKNRNQHGLHIVNKLAPTAE--L---RPSEYTQTDERDL-MPYDVLARIERKAIKER 549 (634)
T ss_dssp SSBBTTTTSCHHHHHHHHHHHHHHSCCGGGSSCC------------------------CC-CTTTHHHHHHHHHTTSC
T ss_pred cCCcccCCCcHHHHHHHHHHHHHcCCCchHHHHcCCCCCcC--c---CcCCCCCCCcccc-CCHHHHHHHHHHHHHcC
Confidence 479999999999999999999 999 99999999999 8 45 885 8899 99999999999987644
No 14
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=99.12 E-value=2.6e-11 Score=105.29 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=44.7
Q ss_pred ccccccccccchHHHHHHHHHcC-----------CChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHHHHhh
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLG-----------LTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKIIVEY 121 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LG-----------lP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~~~~~ 121 (131)
..++.||++|+|+|||+||++|| +|++|++|+|||| | |.||. |.+++ +|+.+|.+|+.+++.
T Consensus 451 ~~~~~Pl~~l~K~eVr~la~~lg~~~~~~~~~~~ip~~i~~k~ps~~--L---~p~q~de~~l~-~Y~~~D~~l~~~~~~ 524 (590)
T 3n05_A 451 VGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPPSAE--L---RPGQVDTDSLP-DYPVLDAILELYVDR 524 (590)
T ss_dssp SCSBCTTTTSCHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTCC----------------------CHHHHHHHHHHHHTS
T ss_pred ccceeecCCCcHHHHHHHHHHhCcccccccccccChHHHhCCCCCCC--C---CCCCcCccccC-CHHHHHHHHHHHHHc
Confidence 36899999999999999999999 9999999999999 7 68995 88997 999999999988776
Q ss_pred h
Q psy7153 122 D 122 (131)
Q Consensus 122 ~ 122 (131)
.
T Consensus 525 ~ 525 (590)
T 3n05_A 525 D 525 (590)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=99.02 E-value=2.7e-10 Score=88.67 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=57.6
Q ss_pred ccccccccccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHHHHhh
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKIIVEY 121 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~~~~~ 121 (131)
..++.||.+++|+|||++++.+|+|.++++|+||++ | +.+|. |.++|.+|+.+|.+|+.+++.
T Consensus 147 ~~~i~Pl~~l~K~ev~~la~~~gip~~i~~~~ps~~--l---~~~q~de~~lg~~y~~ld~~l~~~~~~ 210 (257)
T 2e18_A 147 ASDYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAG--L---WEGQTDEDELGISYNLLDEILWRMIDL 210 (257)
T ss_dssp CSSBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCC--S---STTCCHHHHHTSCHHHHHHHHHHHHTS
T ss_pred ccCEeecCCCcHHHHHHHHHHcCCCHHHhCCCCCCC--c---CCCCcCHhhcCCCHHHHHHHHHHHHhc
Confidence 469999999999999999999999999999999998 7 34785 899999999999999998764
No 16
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=98.97 E-value=5.2e-10 Score=87.98 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=55.8
Q ss_pred ccccccccccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHHH
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKII 118 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~~ 118 (131)
..++.||.+++|+|||++++.+|+|++|++|+||++ | +.+|. |.++|.+|+.+|.+|+.+
T Consensus 150 ~~~i~PL~~l~K~ev~~la~~~gip~~i~~k~psa~--l---~~~q~de~~lg~~y~~ld~~l~~~ 210 (268)
T 1xng_A 150 ACAINPIGELFKTEVYELARRLNIPKKILNKPPSAD--L---FVGQSDEKDLGYPYSVIDPLLKDI 210 (268)
T ss_dssp CCSEETTTTSCHHHHHHHHHHTTCCHHHHTSCCCCC--S---STTCCHHHHHSSCHHHHHHHHHHH
T ss_pred CeeEEecCCCCHHHHHHHHHHcCCcHHHhcCCCCcC--c---CCCCcchhhcCCCHHHHHHHHHHH
Confidence 479999999999999999999999999999999998 7 45885 999999999999999987
No 17
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=98.90 E-value=1.9e-10 Score=102.57 Aligned_cols=66 Identities=11% Similarity=-0.004 Sum_probs=51.5
Q ss_pred ccccccccchHHHHHHHHHc-----------CCChhhhccCCCCCCCcee-e-eccCc-ccccccChHHHHHHHHHHHhh
Q psy7153 56 VIEPLKDFHKDEVRKLGLDL-----------GLTPEVVMRHPFPGPGLAI-R-VICGE-ERYIEKDYSETQVLVKIIVEY 121 (131)
Q Consensus 56 diePL~~L~KdEVR~Lg~~L-----------GlP~~Ii~k~PfpGPGLai-R-~~g~~-e~~l~~~y~~~d~iL~~~~~~ 121 (131)
++.||++|+|+|||+||++| |+|++|++|+|||+ |.= . ..+|. |.++| +|+.+|.+|+.+++.
T Consensus 502 ~~~Pl~~l~K~eVr~lar~l~~~~~~~~~~~~ip~~i~~k~Ps~e--L~p~~~~~~q~de~~lg-~Y~~~D~~L~~~~~~ 578 (680)
T 3sdb_A 502 HYNVNAGVPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITPE--LIPTGEEELQSSEAKVG-PFALQDFSLFQVLRY 578 (680)
T ss_dssp SEETTTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHC---------------CHHHHC-CHHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhhccccccccCchHHHhcCCCCcC--cCCCCCCCCCCchhhcC-CHHHHHHHHHHHHHC
Confidence 58999999999999999999 99999999999999 720 0 13785 99999 999999999999886
Q ss_pred hhh
Q psy7153 122 DQM 124 (131)
Q Consensus 122 ~~~ 124 (131)
..+
T Consensus 579 ~~~ 581 (680)
T 3sdb_A 579 GFR 581 (680)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 18
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=98.73 E-value=3.5e-09 Score=92.44 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=45.2
Q ss_pred cccccccccchHHHHHHHHHcC----------CChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHHHHhhhh
Q psy7153 55 KVIEPLKDFHKDEVRKLGLDLG----------LTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKIIVEYDQ 123 (131)
Q Consensus 55 kdiePL~~L~KdEVR~Lg~~LG----------lP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~~~~~~~ 123 (131)
-++.||++++|++|++|+++++ +|++|++|+|+|+ | +.+|. |..++ +|+.+|.+|+.+++...
T Consensus 432 ~~~~pi~~l~Kt~v~~l~~~~~~~~~~~~~~~ip~~i~~~~psae--L---~~~Q~ded~l~-~Y~~lD~~l~~~~~~~~ 505 (565)
T 4f4h_A 432 GGFAVIKDIAKTLVYRLCRYRNAAAEYGQPDIVPERILTRAPSAE--L---RENQTDQDSLP-PYDVLDAIMRMYMEEDR 505 (565)
T ss_dssp SSEETTTTCCHHHHHHHHHHHHHTCCTTCCCSSCHHHHHC--------------------CC-CHHHHHHHHHHHTTSCC
T ss_pred cCchhccCccHHHHHHHHHHHhhhccccCcccChHHHcCCCCCcC--c---CCCCCCcccCC-CHHHHHHHHHHHHHcCC
Confidence 5899999999999999999998 9999999999999 8 57885 88898 99999999999876544
No 19
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=96.76 E-value=0.00072 Score=49.70 Aligned_cols=37 Identities=24% Similarity=0.044 Sum_probs=34.4
Q ss_pred cccccccccccchHHHHHHHHHcCCChhhhccCCCCC
Q psy7153 53 QGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPG 89 (131)
Q Consensus 53 ~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpG 89 (131)
..+.+.||.+++|+||+++++.+|+|+.++++.|+..
T Consensus 151 ~~~ii~PL~~~~K~ei~~~a~~~glp~~~~~~t~sc~ 187 (219)
T 3bl5_A 151 PFVIHTPLMWLNKAETWKLADELGALDFVKNNTLTCY 187 (219)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCHHHHHHHCCCST
T ss_pred CeEEEeccccCCHHHHHHHHHHcCCCccchhheeecc
Confidence 3578999999999999999999999999999999986
No 20
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=96.24 E-value=0.0012 Score=55.19 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCceeeccccccceeeccCCCCCCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCChhhhccCCCC
Q psy7153 9 NQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFP 88 (131)
Q Consensus 9 ~~~~l~QGTiypD~iES~~~~~~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~Pfp 88 (131)
+..+++.|+.+.|+.|+. + .|..+++.. ....++.||..+.|+||+++|+.+|+++. ..+|++
T Consensus 290 g~~~I~tG~~~dD~ae~~----------l---~~l~~~~~~--~~~~virPL~~l~K~eI~~~a~~~Gl~~~--~~~p~~ 352 (413)
T 2c5s_A 290 NALAITTGESLGQVASQT----------L---DSMHTINEV--TNYPVIRPLITMDKLEIIKIAEEIGTYDI--SIRPYE 352 (413)
T ss_dssp TCCEEECCCCSSSTTSCC----------H---HHHHHHGGG--CCSCEECTTTTCCHHHHHHHHHHTTCHHH--HTSCC-
T ss_pred CCCEEEEcccchhhHHHH----------H---HHHhccccc--CCCEEEeccCCCCHHHHHHHHHHcCCCcc--ccCCCC
Confidence 455899999998887542 1 122111111 13479999999999999999999999743 457888
Q ss_pred CC
Q psy7153 89 GP 90 (131)
Q Consensus 89 GP 90 (131)
++
T Consensus 353 ~~ 354 (413)
T 2c5s_A 353 DC 354 (413)
T ss_dssp --
T ss_pred CC
Confidence 74
No 21
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=95.29 E-value=0.014 Score=48.54 Aligned_cols=76 Identities=24% Similarity=0.245 Sum_probs=47.8
Q ss_pred CCceeecccccccee-eccCCCCCCCCCcccccc-CCchHHH-HHhhcccccccccccchHHHHHHHHHcCCChhhhccC
Q psy7153 9 NQTLLCQGTLRPDLI-ESASHLASNKADVIKTHH-NDSPLIR-ALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRH 85 (131)
Q Consensus 9 ~~~~l~QGTiypD~i-ES~~~~~~~~a~~IKtHH-Nv~~l~~-~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~ 85 (131)
...+++-|+..-|.. |++........+..|.+. ...+++. .+ .+.+.||.++.|.|||++|+.+||| .+.|+
T Consensus 123 G~d~IatGH~a~d~~~~~~~~~l~rg~d~~kdqsyfL~~l~~~~l---~~~i~PL~~~~K~eVr~~A~~~gl~--~~~k~ 197 (376)
T 2hma_A 123 GADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQL---QKTMFPLGHLEKPEVRRLAEEAGLS--TAKKK 197 (376)
T ss_dssp TCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGTTCCHHHH---TTEECTTTTCCHHHHHHHHHHTTCT--TTTCC
T ss_pred CCCEEEECcchhhhhCCCchhhhhhccccccccchhccCCChhhc---CcEEecCcCCCHHHHHHHHHHcCCC--cccCC
Confidence 455888888777766 554210001122222111 1112222 22 3799999999999999999999999 57788
Q ss_pred CCCC
Q psy7153 86 PFPG 89 (131)
Q Consensus 86 PfpG 89 (131)
++.|
T Consensus 198 ~s~~ 201 (376)
T 2hma_A 198 DSTG 201 (376)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8887
No 22
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=93.72 E-value=0.028 Score=46.93 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=40.2
Q ss_pred CCceeeccccccceeeccCCCCCCCCCcccccc-CCchHHH-HHhhcccccccccccchHHHHHHHHHcCCChhhhccCC
Q psy7153 9 NQTLLCQGTLRPDLIESASHLASNKADVIKTHH-NDSPLIR-ALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHP 86 (131)
Q Consensus 9 ~~~~l~QGTiypD~iES~~~~~~~~a~~IKtHH-Nv~~l~~-~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~P 86 (131)
...+++-|...-|..|+.........+.-|.+. ...+++. .+ .+.+.||.++.|.|||++|+.+||| ++.+++
T Consensus 132 Gad~IatGH~a~d~~~~~~~~l~rg~~~~kdqsy~L~~l~~~~l---~~~i~PL~~~~K~eVr~~A~~~Gl~--~~~kp~ 206 (380)
T 2der_A 132 GADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQI---AQSLFPVGELEKPQVRKIAEDLGLV--TAKKKD 206 (380)
T ss_dssp CCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGGGSSCCHHHH---HHEECCGGGSCHHHHHHHHHHTTCC--------
T ss_pred CCCEEEEccccccccccchHHHhcccccccccceeecCCChhhc---ceeEccCCCCCHHHHHHHHHHcCCC--CccCCC
Confidence 445888888777766654211001111222110 0111222 22 2689999999999999999999999 567777
Q ss_pred CCC
Q psy7153 87 FPG 89 (131)
Q Consensus 87 fpG 89 (131)
+.|
T Consensus 207 s~~ 209 (380)
T 2der_A 207 STG 209 (380)
T ss_dssp ---
T ss_pred CCC
Confidence 776
No 23
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=91.30 E-value=0.088 Score=39.52 Aligned_cols=37 Identities=14% Similarity=-0.100 Sum_probs=28.4
Q ss_pred cccccccccccchHHHHHHHHHcCC-Ch--hhhccCCCCC
Q psy7153 53 QGKVIEPLKDFHKDEVRKLGLDLGL-TP--EVVMRHPFPG 89 (131)
Q Consensus 53 ~~kdiePL~~L~KdEVR~Lg~~LGl-P~--~Ii~k~PfpG 89 (131)
..+++.||.+++|.||+++|+.+|+ |- +..+.-..++
T Consensus 154 ~~~i~~PL~~~~K~ei~~~a~~~gl~~~~~~~t~sC~~~~ 193 (232)
T 2pg3_A 154 DIRFETPLMWLNKAETWALADYYQQLDTVRYHTLTCYNGI 193 (232)
T ss_dssp CCEEECTTTTCCHHHHHHHHHHTTCHHHHHHHCCCCTTSC
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCcccccccCCCcCCC
Confidence 3578999999999999999999999 63 4444433333
No 24
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=89.49 E-value=0.58 Score=34.93 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=38.2
Q ss_pred CCceeeccccccceeeccCCCCCCCCCccccccCCchHHHHHhhcccccccccccchHHHHHHHHHcCCC
Q psy7153 9 NQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLT 78 (131)
Q Consensus 9 ~~~~l~QGTiypD~iES~~~~~~~~a~~IKtHHNv~~l~~~~~~~~kdiePL~~L~KdEVR~Lg~~LGlP 78 (131)
+..+++.|+-.-|.+|+... .+..+++... ....+.||..+.|+|+|++|+.+ ++
T Consensus 101 g~~~i~tGh~~dD~~et~~~------------~gl~~~~~~~--~~~iirPLl~~~k~eI~~~a~~~-l~ 155 (203)
T 3k32_A 101 EYSILADGTRRDDRVPKLSY------------SEIQSLEMRK--NIQYITPLMGFGYKTLRHLASEF-FI 155 (203)
T ss_dssp TCSEEECCCCTTCCSSCCCH------------HHHHHHHHHH--TCEEECGGGGCCHHHHHHHHHHH-EE
T ss_pred CCCEEEECCCcccchhhcch------------hhccCccccc--CCeEEeccCCCCHHHHHHHHHHh-CC
Confidence 45678888888888875320 1111222222 35789999999999999999997 44
No 25
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=88.05 E-value=0.34 Score=35.95 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=33.1
Q ss_pred cccccccccchHHHHHHHHHcCCChhhhccCCCCCCC
Q psy7153 55 KVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPG 91 (131)
Q Consensus 55 kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPG 91 (131)
..+.||.++.|+||++.++..|||-.-++.+.|+..|
T Consensus 176 ~~i~PLl~~t~~dI~~y~~~~~lp~~~lY~~Gy~siG 212 (215)
T 1sur_A 176 FKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVG 212 (215)
T ss_dssp EEECTTTTCCHHHHHHHHHHHTCCCCGGGGGTCSCCC
T ss_pred EEEechHhCCHHHHHHHHHHhCCCCChHHhCCCCCCC
Confidence 4799999999999999999999999988888777644
No 26
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=85.09 E-value=0.31 Score=41.95 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=23.8
Q ss_pred cccccccccc-------cchHHHHHHHHHcCCChhh
Q psy7153 53 QGKVIEPLKD-------FHKDEVRKLGLDLGLTPEV 81 (131)
Q Consensus 53 ~~kdiePL~~-------L~KdEVR~Lg~~LGlP~~I 81 (131)
..+.+.|+++ +.|.|||++|+.+|||-..
T Consensus 148 ~~~IiaPl~d~~~l~~~lsK~Eir~~A~e~Glp~~~ 183 (421)
T 1vl2_A 148 NLKVISPWKDPEFLAKFKGRTDLINYAMEKGIPIKV 183 (421)
T ss_dssp TSEEECGGGCHHHHHHTC--CHHHHHHHHHTCCCCS
T ss_pred CCeEEcccCchhhccccCCHHHHHHHHHHcCCCccc
Confidence 3589999999 7999999999999999653
No 27
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=85.05 E-value=0.27 Score=39.64 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=22.2
Q ss_pred ccccccccccchHHHHHHHHHcCC
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGL 77 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGl 77 (131)
.+.+.||..+.|+||+++|+.+|+
T Consensus 284 ~~vl~PL~~~~K~eI~~~a~~iGl 307 (307)
T 1vbk_A 284 VPVYYPLIALPEEYIKSVKERLGL 307 (307)
T ss_dssp SCEECHHHHSCHHHHHHHHHHHTC
T ss_pred CeEEEccCCCCHHHHHHHHHHcCC
Confidence 468999999999999999999986
No 28
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=78.50 E-value=1.1 Score=35.43 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=24.2
Q ss_pred ccccccccccchHHHHHHHHHcCCCh
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGLTP 79 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGlP~ 79 (131)
+.++-||.++.|+||++.++..|+|.
T Consensus 163 ~~iirPLl~~~k~eI~~~~~~~gl~~ 188 (317)
T 1wy5_A 163 EVIRRPLYYVKRSEIEEYAKFKGLRW 188 (317)
T ss_dssp TTEECTTTTCCHHHHHHHHHHTTCCC
T ss_pred CeEECCCccCCHHHHHHHHHHcCCCe
Confidence 36999999999999999999999994
No 29
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=77.67 E-value=1.2 Score=38.56 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=28.6
Q ss_pred cccccccccc-------cchHHHHHHHHHcCCChhhhccCCC
Q psy7153 53 QGKVIEPLKD-------FHKDEVRKLGLDLGLTPEVVMRHPF 87 (131)
Q Consensus 53 ~~kdiePL~~-------L~KdEVR~Lg~~LGlP~~Ii~k~Pf 87 (131)
..+.+.|+++ +.|+|++++|+.+|||-..-...|+
T Consensus 149 ~l~viaPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~t~~~py 190 (455)
T 1k92_A 149 ELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAY 190 (455)
T ss_dssp TCEEECGGGCHHHHHHSSSHHHHHHHHHHTTCCCCCCCCCSS
T ss_pred CCEEECeeccccccccCCCHHHHHHHHHHcCCCcccCCCCCC
Confidence 4588999998 7999999999999999765444454
No 30
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=74.68 E-value=1.6 Score=36.74 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=26.1
Q ss_pred ccccccccccc---chHHHHHHHHHcCCChhhhccCC
Q psy7153 53 QGKVIEPLKDF---HKDEVRKLGLDLGLTPEVVMRHP 86 (131)
Q Consensus 53 ~~kdiePL~~L---~KdEVR~Lg~~LGlP~~Ii~k~P 86 (131)
..+.+.||+++ .|.||+++++..|+|-......|
T Consensus 135 ~l~ii~PL~~~~~~tK~eI~~ya~~~gip~~~~~~~p 171 (400)
T 1kor_A 135 DIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKP 171 (400)
T ss_dssp TCEEECGGGTCCCCSHHHHHHHHHHTTCCCC-----C
T ss_pred CCEEEEeecccccCCHHHHHHHHHHcCCCcccCCCCC
Confidence 45789999999 99999999999999976533334
No 31
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=63.41 E-value=4 Score=34.32 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=24.1
Q ss_pred ccccccccccchHHHHHHHHHcCCCh
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGLTP 79 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGlP~ 79 (131)
+.++-||.++.|.||++.++..|+|-
T Consensus 161 ~~iiRPLl~~~k~eI~~ya~~~gl~~ 186 (464)
T 3a2k_A 161 GYLIRPFLAVSRAEIEAYCRQMGLSP 186 (464)
T ss_dssp SEEECGGGGSCHHHHHHHHHHTCCSS
T ss_pred CEEECCCccCcHHHHHHHHHHcCCCe
Confidence 46899999999999999999999993
No 32
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=60.72 E-value=4.5 Score=34.17 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.7
Q ss_pred cccccccc------cc-chHHHHHHHHHcCCChh
Q psy7153 54 GKVIEPLK------DF-HKDEVRKLGLDLGLTPE 80 (131)
Q Consensus 54 ~kdiePL~------~L-~KdEVR~Lg~~LGlP~~ 80 (131)
.+.+.|++ ++ .|.|++++|+.+|||..
T Consensus 140 l~ii~Pl~d~~~ll~~~sK~EI~~yA~~~Gip~~ 173 (413)
T 2nz2_A 140 IKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIP 173 (413)
T ss_dssp CEEECGGGCHHHHTTCC-CHHHHHHHHHTTCCCC
T ss_pred CceeccccchhhhccCCCHHHHHHHHHHcCCCee
Confidence 57899999 88 99999999999999975
No 33
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=60.35 E-value=5.8 Score=30.43 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=29.3
Q ss_pred cccccccccchHHHHHHHHHcCCChhhhccCCCC
Q psy7153 55 KVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFP 88 (131)
Q Consensus 55 kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~Pfp 88 (131)
..+.||.++.++||++.++..|||-.-++.+=|+
T Consensus 177 ~~i~PL~~wt~~dV~~y~~~~~lp~~~Ly~~Gy~ 210 (252)
T 2o8v_A 177 FKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYL 210 (252)
T ss_dssp EEECGGGSCCHHHHHHHHHHTTCCCCTTTTTTCS
T ss_pred EEEechhhCCHHHHHHHHHHcCCCCChHHhCCCC
Confidence 4789999999999999999999998777766443
No 34
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=60.21 E-value=4.3 Score=33.84 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=24.1
Q ss_pred ccccccccccchHHHHHHHHHcCCCh
Q psy7153 54 GKVIEPLKDFHKDEVRKLGLDLGLTP 79 (131)
Q Consensus 54 ~kdiePL~~L~KdEVR~Lg~~LGlP~ 79 (131)
...+-||.++.|.|+++.++..|+|-
T Consensus 150 ~~iiRPLl~~~k~eI~~y~~~~gl~~ 175 (433)
T 1ni5_A 150 TRLIRPLLARTRGELVQWARQYDLRW 175 (433)
T ss_dssp EEEECGGGSCCHHHHHHHHHHTTCCC
T ss_pred ceEEccCccCCHHHHHHHHHHcCCCe
Confidence 46899999999999999999999983
No 35
>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum}
Probab=57.80 E-value=11 Score=32.94 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccccChHHHHHHHHHHH
Q psy7153 65 KDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEKDYSETQVLVKIIV 119 (131)
Q Consensus 65 KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~~y~~~d~iL~~~~ 119 (131)
..|...+-+.||+|. .||||+.|..-... +..+-.|..-++.+++.+-
T Consensus 280 ~~ea~~W~kkLgL~~-------~p~~gF~V~~k~~gG~i~I~~Dlspi~~m~~sl~ 328 (407)
T 2p7n_A 280 ESDARKWAKEMGLPD-------APPPGFSCVQKAADGNWVVVVDMTPIDTMIRDVG 328 (407)
T ss_dssp HHHHHHHHHHTTCCC-------CCTTSCCSEEECTTSSEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc-------CCCCCeeEEEecCCCceEEEeChHHHHHHHhccc
Confidence 478899999999886 56889977555444 5567788888888888653
No 36
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=44.42 E-value=19 Score=28.06 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=34.0
Q ss_pred ccchHHHHHHHHHcCCChhhhccCCC-CCCCceeeeccCc-ccccc
Q psy7153 62 DFHKDEVRKLGLDLGLTPEVVMRHPF-PGPGLAIRVICGE-ERYIE 105 (131)
Q Consensus 62 ~L~KdEVR~Lg~~LGlP~~Ii~k~Pf-pGPGLaiR~~g~~-e~~l~ 105 (131)
.|..++.++||+++|+++-+.=.+|. ++-.+.+||-..+ |.++|
T Consensus 35 ~l~~~~mq~iA~~~~~set~fv~~~~~~~~d~~lR~Ftp~~E~~~C 80 (300)
T 1ym5_A 35 EVSQEELQAIANWTNLSETTFLFKPSDKKYDYKLRIFTPRSELPFA 80 (300)
T ss_dssp GSCHHHHHHHHHHHTSSCEEEEECCSSTTCSEEEEEECSSCEESCC
T ss_pred CCCHHHHHHHHHHhCCCceEEEecCCCCCCcEEEEEEcCCCCcCcC
Confidence 46778999999999999887776664 5556999998887 44443
No 37
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=39.15 E-value=22 Score=27.57 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=28.4
Q ss_pred cccccccccchHHHHHHHHHcCCChhhhccCCC
Q psy7153 55 KVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPF 87 (131)
Q Consensus 55 kdiePL~~L~KdEVR~Lg~~LGlP~~Ii~k~Pf 87 (131)
..+.||.+..++||++..+..|||-.-++..=|
T Consensus 191 ~~i~PL~~wt~~dV~~Yi~~~~lp~~~Ly~~Gy 223 (275)
T 2goy_A 191 YKFNPLSSMTSEEVWGYIRMLELPYNSLHERGY 223 (275)
T ss_dssp EEECTTTTCCHHHHHHHHHHTTCCCCGGGGGTC
T ss_pred EEEechHhCCHHHHHHHHHHhCCCCChHHHcCC
Confidence 469999999999999999999999877666544
No 38
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=38.70 E-value=25 Score=27.44 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccc
Q psy7153 62 DFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIE 105 (131)
Q Consensus 62 ~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~ 105 (131)
.|..++.++||+++|+++-+.=.+|..+-...+||-..+ |.++|
T Consensus 48 ~l~~~~mq~IA~e~~~sEt~Fv~~~~~~~d~~lR~Ftp~~E~~~C 92 (298)
T 1xub_A 48 DLPPAQMQRIAREMNLSESTFVLKPRNGGDALIRIFTPVNELPFA 92 (298)
T ss_dssp GSCHHHHHHHHHHHCSSCEEEEECCSSSSSEEEEEECSSCEESCC
T ss_pred CCCHHHHHHHHHHhCCceEEEEecCCCCCcEEEEEEcCCCCcCcC
Confidence 577889999999999998877666643345899999887 44443
No 39
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=38.45 E-value=13 Score=19.80 Aligned_cols=17 Identities=0% Similarity=0.130 Sum_probs=14.1
Q ss_pred HHHHHHHcCCChhhhcc
Q psy7153 68 VRKLGLDLGLTPEVVMR 84 (131)
Q Consensus 68 VR~Lg~~LGlP~~Ii~k 84 (131)
++++|+.||++..-|.+
T Consensus 24 ~~~IA~~lgis~~Tv~~ 40 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRV 40 (51)
T ss_dssp HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 57899999999877654
No 40
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=35.87 E-value=13 Score=23.10 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=23.2
Q ss_pred HHHHHHcCCChhhhccCCCCCCCceeeecc
Q psy7153 69 RKLGLDLGLTPEVVMRHPFPGPGLAIRVIC 98 (131)
Q Consensus 69 R~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g 98 (131)
.++|-..|-.=+++.+.||.|| +.||+-|
T Consensus 28 ~~lGl~~G~~v~v~~~~p~~~p-~~v~v~~ 56 (75)
T 2h3j_A 28 FSMGLLPGAALRVVRIAPLGDP-IQVETRQ 56 (75)
T ss_dssp HHHTCCTTCEEEEEECCTTSCC-CEEESSS
T ss_pred HHcCCCCCCEEEEEEECCCCCC-EEEEECC
Confidence 5577777777789999999997 7788754
No 41
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.59 E-value=21 Score=24.05 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.0
Q ss_pred ccchHHHHHHHHHcCCChhhhc
Q psy7153 62 DFHKDEVRKLGLDLGLTPEVVM 83 (131)
Q Consensus 62 ~L~KdEVR~Lg~~LGlP~~Ii~ 83 (131)
.-...|..+||..+|||.+.|.
T Consensus 29 ~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 29 EPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp SCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHH
Confidence 4567899999999999999874
No 42
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=34.14 E-value=13 Score=25.28 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=15.4
Q ss_pred HHHHHHHcCCChhhhccC
Q psy7153 68 VRKLGLDLGLTPEVVMRH 85 (131)
Q Consensus 68 VR~Lg~~LGlP~~Ii~k~ 85 (131)
..+||+.||++..-|+|+
T Consensus 32 a~~IAkkLg~sK~~vNr~ 49 (75)
T 1sfu_A 32 AISLSNRLKINKKKINQQ 49 (75)
T ss_dssp HHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 477999999999988874
No 43
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=33.28 E-value=12 Score=24.45 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=24.3
Q ss_pred HHHHHHHcCCChhhhccCCCCCCCceeeeccC
Q psy7153 68 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICG 99 (131)
Q Consensus 68 VR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~ 99 (131)
..++|-..|-.=+++.+.||.|| +.||+-|.
T Consensus 31 L~~mGl~pG~~V~V~~~~p~~gp-i~v~v~g~ 61 (86)
T 2k4y_A 31 IMDMGIVRGTEIYIEGKAPMGDP-IALRLRGY 61 (86)
T ss_dssp HHHHTCCTTCEEEEEEECTTSCS-EEEEETTE
T ss_pred HHHCCCCCCCEEEEEEeCCCCCC-EEEEECCE
Confidence 35677777777789999999997 88888543
No 44
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=32.66 E-value=27 Score=26.89 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=26.6
Q ss_pred ccccccccchHHHHHHHHHcCCChhhhccC
Q psy7153 56 VIEPLKDFHKDEVRKLGLDLGLTPEVVMRH 85 (131)
Q Consensus 56 diePL~~L~KdEVR~Lg~~LGlP~~Ii~k~ 85 (131)
.+.||.+..+.||++..+..|||-.-++..
T Consensus 183 ki~PL~~wt~~dV~~Yi~~~~lp~~pLy~~ 212 (261)
T 2oq2_A 183 KINPLINWTFEQVKQYIDANNVPYNELLDL 212 (261)
T ss_dssp EECTTTTCCHHHHHHHHHHHTCCCCGGGGG
T ss_pred EEechHhCCHHHHHHHHHHcCCCCCchhhC
Confidence 489999999999999999999997766554
No 45
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile}
Probab=32.55 E-value=18 Score=28.38 Aligned_cols=42 Identities=10% Similarity=0.062 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccc
Q psy7153 62 DFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIE 105 (131)
Q Consensus 62 ~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~ 105 (131)
.|..+++++||+++|+++-..-.++ +....+||--.+ |..+|
T Consensus 30 ~l~~~~mq~iA~e~~~sET~Fv~~~--~~d~~lR~Ftp~~Ev~~C 72 (263)
T 4dun_A 30 RIPLELMQKIAEENNLPETAFVVKG--KGNYELRWFTPKAEIDLC 72 (263)
T ss_dssp CCCHHHHHHHHHHHCSSEEEEEEEE--TTEEEEEEECSSCEESCC
T ss_pred CCCHHHHHHHHHHhCCCeEEEEEeC--CCcEEEEEEeCCcEeccC
Confidence 5788999999999999987654443 557899999887 44443
No 46
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=30.29 E-value=26 Score=27.88 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=27.7
Q ss_pred ccccccccchHHHHHHHHHcCCChhhhccCCC
Q psy7153 56 VIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPF 87 (131)
Q Consensus 56 diePL~~L~KdEVR~Lg~~LGlP~~Ii~k~Pf 87 (131)
-+.||.+..+.||+...+..|||-.-++..=|
T Consensus 190 ri~PL~dWt~~DVw~Yi~~~~lpy~pLYd~GY 221 (306)
T 2wsi_A 190 RLQPLLHWDLTNIWSFLLYSNEPICGLYGKGF 221 (306)
T ss_dssp EECTTTTCCHHHHHHHHHHHCCCBCHHHHTTC
T ss_pred EEeChHHCCHHHHHHHHHHcCCCCChhHhcCC
Confidence 48999999999999999999999877666533
No 47
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=30.07 E-value=15 Score=23.63 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=23.5
Q ss_pred HHHHHHcCCChhhhccCCCCCCCceeeeccC
Q psy7153 69 RKLGLDLGLTPEVVMRHPFPGPGLAIRVICG 99 (131)
Q Consensus 69 R~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~ 99 (131)
.++|-..|-.=+++.+.||.|| +.|++-|.
T Consensus 29 ~~lGl~pG~~v~V~~~~p~~gp-i~v~v~g~ 58 (81)
T 2k5l_A 29 MDMGITRGCEIYIRKVAPLGDP-IQINVRGY 58 (81)
T ss_dssp HHHTCCTTCEEEEEEECTTSCC-EEEEETTE
T ss_pred HHCCCCCCCEEEEEEeCCCCCC-EEEEECCE
Confidence 5577777777789999999987 77888543
No 48
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=29.14 E-value=11 Score=24.87 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=23.2
Q ss_pred HHHHHHcCCChhhhccCCCCCCCceeeeccC
Q psy7153 69 RKLGLDLGLTPEVVMRHPFPGPGLAIRVICG 99 (131)
Q Consensus 69 R~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~ 99 (131)
.++|-..|-.=+++.+.||.|| +.||+-|.
T Consensus 27 ~~mGl~pG~~V~Vi~~ap~ggP-i~v~v~g~ 56 (83)
T 2lx9_A 27 LSLGMLPGSSFNVVRVAPLGDP-IHIETRRV 56 (83)
T ss_dssp HHSSCCSSSEEEEEEECTTTCC-EEEECSSC
T ss_pred HHCCCCCCCEEEEEEeCCCCCc-EEEEECCE
Confidence 4466666777789999999998 77888664
No 49
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=29.01 E-value=28 Score=28.08 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=25.6
Q ss_pred ccccccccchHHHHHHHHHcCCChhhhc
Q psy7153 56 VIEPLKDFHKDEVRKLGLDLGLTPEVVM 83 (131)
Q Consensus 56 diePL~~L~KdEVR~Lg~~LGlP~~Ii~ 83 (131)
.+.||.+..+.||++.++..|||-.-++
T Consensus 201 ~i~PLl~wt~~dIw~Yi~~~~lp~~~LY 228 (325)
T 1zun_A 201 RVFPLSNWTELDIWQYIYLEGIPIVPLY 228 (325)
T ss_dssp EECTTTTCCHHHHHHHHHHHTCCCCSCC
T ss_pred EEEchhhCCHHHHHHHHHHhCCCcchhh
Confidence 4899999999999999999999987666
No 50
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=28.92 E-value=23 Score=21.07 Aligned_cols=17 Identities=6% Similarity=0.120 Sum_probs=14.3
Q ss_pred HHHHHHHcCCChhhhcc
Q psy7153 68 VRKLGLDLGLTPEVVMR 84 (131)
Q Consensus 68 VR~Lg~~LGlP~~Ii~k 84 (131)
++++|+.+||+...|.+
T Consensus 28 ~~~vA~~~gIs~~tl~~ 44 (59)
T 2glo_A 28 QRATARKYNIHRRQIQK 44 (59)
T ss_dssp HHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 78999999999877654
No 51
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=28.33 E-value=22 Score=22.09 Aligned_cols=18 Identities=6% Similarity=-0.005 Sum_probs=15.0
Q ss_pred HHHHHHHcCCChhhhccC
Q psy7153 68 VRKLGLDLGLTPEVVMRH 85 (131)
Q Consensus 68 VR~Lg~~LGlP~~Ii~k~ 85 (131)
+.+||+.||+|..-|+|+
T Consensus 28 ~~eLA~~lglsr~tv~~~ 45 (67)
T 2heo_A 28 IFQLVKKCQVPKKTLNQV 45 (67)
T ss_dssp HHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH
Confidence 467999999999888763
No 52
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=28.02 E-value=17 Score=23.45 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=13.6
Q ss_pred HHHHHHHHcCCChhhhcc
Q psy7153 67 EVRKLGLDLGLTPEVVMR 84 (131)
Q Consensus 67 EVR~Lg~~LGlP~~Ii~k 84 (131)
-+.+||+.||++..-|+|
T Consensus 33 t~~eLA~~Lgvs~~tV~~ 50 (77)
T 1qgp_A 33 TAHDLSGKLGTPKKEINR 50 (77)
T ss_dssp EHHHHHHHHCCCHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHH
Confidence 347799999998876654
No 53
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=27.97 E-value=44 Score=25.97 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-cccccc
Q psy7153 62 DFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEK 106 (131)
Q Consensus 62 ~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~ 106 (131)
.|..+++++||+++|+++-++=. |..+-.+.+||-..+ |.++|-
T Consensus 39 ~l~~~~mq~iA~e~~~set~fv~-p~~~~d~~~R~Ftp~~E~~~CG 83 (307)
T 1qya_A 39 NLSEAQMQLIARELGHSETAFLL-HSDDSDVRIRYFTPTVEVPICG 83 (307)
T ss_dssp TCCHHHHHHHHHHHCCSCEEEEE-CCSSSSEEEEEECSSSEECC--
T ss_pred CCCHHHHHHHHHHhCCceEEEEE-ecCCCceEEEEECCCCEeCCCc
Confidence 46788999999999999876654 554445889999887 545543
No 54
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.61 E-value=97 Score=19.20 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=24.8
Q ss_pred hHHHHHHHHHcCCChhhhccCCCCCCCceeeec
Q psy7153 65 KDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 97 (131)
Q Consensus 65 KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~ 97 (131)
.+|+.+.++.+|.| +|-|+.+.+=|.+|+++
T Consensus 34 ~~~~~~~~~~~~~P--~vvKp~~~~~~~gv~~v 64 (108)
T 2cqy_A 34 AEEAVRIAREIGYP--VMIKASAGGGGKGMRIA 64 (108)
T ss_dssp HHHHHHHHHHHCSS--EEEEETTSCCTTTCEEE
T ss_pred HHHHHHHHHhcCCC--EEEEECCCCCCccEEEe
Confidence 46778888889988 78888888877877764
No 55
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=27.11 E-value=23 Score=19.20 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=14.0
Q ss_pred HHHHHHHcCCChhhhcc
Q psy7153 68 VRKLGLDLGLTPEVVMR 84 (131)
Q Consensus 68 VR~Lg~~LGlP~~Ii~k 84 (131)
++++|+.||++..-|.|
T Consensus 24 ~~~ia~~lgvs~~Tv~r 40 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYR 40 (52)
T ss_dssp HHHHHHTTSCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH
Confidence 57899999999877765
No 56
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=27.05 E-value=19 Score=24.50 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.1
Q ss_pred HHHHHHHcCCChhhhccC
Q psy7153 68 VRKLGLDLGLTPEVVMRH 85 (131)
Q Consensus 68 VR~Lg~~LGlP~~Ii~k~ 85 (131)
+.+||+.||++..-|+|+
T Consensus 33 a~eLAk~LgiSk~aVr~~ 50 (82)
T 1oyi_A 33 AAQLTRQLNMEKREVNKA 50 (82)
T ss_dssp HHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH
Confidence 577999999998766553
No 57
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=26.76 E-value=25 Score=23.85 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=19.4
Q ss_pred chHHHHHHHHHcCCChhhhc----cCCCCC
Q psy7153 64 HKDEVRKLGLDLGLTPEVVM----RHPFPG 89 (131)
Q Consensus 64 ~KdEVR~Lg~~LGlP~~Ii~----k~PfpG 89 (131)
.-.+++++||.|||.+.-|+ .+|-..
T Consensus 11 ~~~~wK~~~R~LGlse~~Id~I~~~~~~d~ 40 (86)
T 3oq9_A 11 TIQEAKKFARENNIKEGKIDEIMHDSIQDT 40 (86)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHHHTCTTCC
T ss_pred CHHHHHHHHHHcCCCHhHHHHHHHhCCCCh
Confidence 34688999999999986655 555543
No 58
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=25.62 E-value=55 Score=25.29 Aligned_cols=43 Identities=9% Similarity=0.185 Sum_probs=31.6
Q ss_pred ccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccc
Q psy7153 62 DFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIE 105 (131)
Q Consensus 62 ~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~ 105 (131)
.|..+++++||+++|+++-++=.+|. .....+||-... |.++|
T Consensus 30 ~l~~~~mq~iA~~~~~~et~fv~~~~-~ad~~~R~FnpgsE~~~C 73 (299)
T 3edn_A 30 GLTEEEMQRIAEKVGFNETSFVLSSE-VADIRMRYFTPGYEMDLC 73 (299)
T ss_dssp TCCHHHHHHHHHHHCSSCEEEEECCS-SSSEEEEEECSSCEESCC
T ss_pred CCCHHHHHHHHHHhCCCeEEEEecCC-CCCEEEEEECCCCccccC
Confidence 46678999999999999887655443 345889998873 44443
No 59
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=23.70 E-value=28 Score=23.97 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=30.1
Q ss_pred HHHHHHcCCChhhhccCCCCCCCceeeeccCcccccccChHHHHHH
Q psy7153 69 RKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVL 114 (131)
Q Consensus 69 R~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~e~~l~~~y~~~d~i 114 (131)
.++|-..|-.=+++.+.||.|| +.|++-| ..+....++.+.|
T Consensus 28 ~~lGl~pG~~V~Vv~~~P~ggp-i~V~v~g---~~iaL~~~~A~~I 69 (105)
T 2k5f_A 28 MDLGLVRGAKLKVLRFAPLGDP-IEVNCNG---MLLTMRRNEAEGI 69 (105)
T ss_dssp HHHTCSTTCEEEEEEECSSSCS-EEEEETT---EEEEECHHHHHHE
T ss_pred HHcCCCCCCEEEEEEECCCCCC-EEEEECC---EEEEeCHHHhCce
Confidence 5566667777789999999987 8888854 3355666666655
No 60
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Probab=23.57 E-value=47 Score=25.28 Aligned_cols=45 Identities=16% Similarity=0.371 Sum_probs=33.8
Q ss_pred ccchHHHHHHHHH---cCCChhhhccCC-CCCCCceeeeccCccccccc
Q psy7153 62 DFHKDEVRKLGLD---LGLTPEVVMRHP-FPGPGLAIRVICGEERYIEK 106 (131)
Q Consensus 62 ~L~KdEVR~Lg~~---LGlP~~Ii~k~P-fpGPGLaiR~~g~~e~~l~~ 106 (131)
.|..+++++||++ +|+.+-++-.+| .++-...+||...+..|+.+
T Consensus 24 ~l~~~~~q~ia~e~~G~g~~et~fv~~~~~~~~d~~~r~F~pdG~E~~~ 72 (274)
T 2gke_A 24 FFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQ 72 (274)
T ss_dssp CCCHHHHHHHHCTTTSCCCSEEEEEECCSSTTSSEEEEEEETTSCEESC
T ss_pred CCCHHHHHHhhCcCCCcccceEEEECCCCCCCCCEEEEEECCCCChHHh
Confidence 4678889999999 999998865544 55666899999887344433
No 61
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2
Probab=23.42 E-value=47 Score=25.60 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=32.9
Q ss_pred ccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-cccccc
Q psy7153 62 DFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIEK 106 (131)
Q Consensus 62 ~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~~ 106 (131)
.|..+++++||+++|+++-++=.+|..+-.+.+||-..+ |.++|-
T Consensus 31 ~l~~~~mq~ia~~~~~set~fv~~~~~~~d~~~R~Ftp~~E~~~CG 76 (288)
T 1u0k_A 31 ALDDAAMQAWTRELRQFESIFLLPGDDPRAFRARIFTLEEELPFAG 76 (288)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEEEECSCTTEEEEEEEESSCBCCSCC
T ss_pred CCCHHHHHHHHHHhCCCeEEEEecCCCCCcEEEEEECCCCeeCcCc
Confidence 356788999999999998775554432445889999887 555543
No 62
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=23.00 E-value=54 Score=21.25 Aligned_cols=23 Identities=9% Similarity=0.359 Sum_probs=18.9
Q ss_pred ccccchHHHHHHHHHcCCChhhh
Q psy7153 60 LKDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 60 L~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
...+...+..+||..|||++.-|
T Consensus 43 ~~yp~~~~r~~La~~lgL~~~~V 65 (80)
T 1wh5_A 43 IQRQDDEVIQRFCQETGVPRQVL 65 (80)
T ss_dssp CCTTTHHHHHHHHHHSCCCHHHH
T ss_pred CCCcCHHHHHHHHHHhCCCcccc
Confidence 34567789999999999998765
No 63
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=22.88 E-value=53 Score=21.53 Aligned_cols=25 Identities=20% Similarity=0.013 Sum_probs=20.1
Q ss_pred ccccccchHHHHHHHHHcCCChhhh
Q psy7153 58 EPLKDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 58 ePL~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
+==..+...|..+||+.+||++.-|
T Consensus 24 ~~~~YPs~~er~eLA~~tgLt~~qV 48 (66)
T 3nau_A 24 LQSQFPDDAEVYRLIEVTGLARSEI 48 (66)
T ss_dssp HGGGSCCHHHHHHHHHHHCCCHHHH
T ss_pred hcCCCCCHHHHHHHHHHhCcCHHHh
Confidence 3334667899999999999998765
No 64
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=22.80 E-value=58 Score=19.14 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.1
Q ss_pred cccchHHHHHHHHHcCCChhhh
Q psy7153 61 KDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 61 ~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
......|..+||..|||++.-|
T Consensus 23 ~yp~~~~r~~La~~l~l~~~qV 44 (58)
T 1ig7_A 23 QYLSIAERAEFSSSLSLTETQV 44 (58)
T ss_dssp SCCCHHHHHHHHHHTTCCHHHH
T ss_pred CCcCHHHHHHHHHHHCcCHHHh
Confidence 3567788899999999998755
No 65
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=22.66 E-value=57 Score=19.31 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=17.8
Q ss_pred cccchHHHHHHHHHcCCChhhh
Q psy7153 61 KDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 61 ~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
......|..+||+.|||++.-|
T Consensus 20 ~yp~~~~r~~LA~~l~l~~~qV 41 (56)
T 3a03_A 20 KYLASAERAALAKALRMTDAQV 41 (56)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCcCHHHHHHHHHHhCcCHHHh
Confidence 3566778899999999998755
No 66
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=22.41 E-value=25 Score=23.21 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=13.4
Q ss_pred HHHHHHHcCCChhhhccC
Q psy7153 68 VRKLGLDLGLTPEVVMRH 85 (131)
Q Consensus 68 VR~Lg~~LGlP~~Ii~k~ 85 (131)
+.+||+.||++..-|+|+
T Consensus 30 ~~eLA~~Lgvsr~tV~~~ 47 (81)
T 1qbj_A 30 AHDLSGKLGTPKKEINRV 47 (81)
T ss_dssp HHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHH
Confidence 467999999998766543
No 67
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2
Probab=21.98 E-value=39 Score=25.75 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=31.5
Q ss_pred ccchHHHHHHHHHcCCChhhhccCCCCCCCceeeeccCc-ccccc
Q psy7153 62 DFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE-ERYIE 105 (131)
Q Consensus 62 ~L~KdEVR~Lg~~LGlP~~Ii~k~PfpGPGLaiR~~g~~-e~~l~ 105 (131)
.|..+++++||+++|+++-+.=.++ +-...+||-..+ |.++|
T Consensus 29 ~l~~~~~q~ia~~~~~set~fv~~~--~~d~~~R~Ftp~~E~~~C 71 (262)
T 1s7j_A 29 WLPEAVMQNIAIENNLSETAFTVKE--GQSYALRWFTPEREIDLC 71 (262)
T ss_dssp CCCHHHHHHHHHHHCCSCEEEEEEE--TTEEEEEEECSSSEESCC
T ss_pred CCCHHHHHHHHHHhCCCEEEEEEcC--CCCEEEEEECCCCccCcC
Confidence 4778899999999999987765433 345889999887 44443
No 68
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.86 E-value=54 Score=20.53 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=18.7
Q ss_pred cccchHHHHHHHHHcCCChhhh
Q psy7153 61 KDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 61 ~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
......|..+||+.|||++.-|
T Consensus 40 ~yp~~~~r~~La~~l~l~~~qV 61 (80)
T 2da3_A 40 SNPTRKMLDHIAHEVGLKKRVV 61 (80)
T ss_dssp SSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHh
Confidence 4667889999999999998765
No 69
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=21.42 E-value=37 Score=19.37 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.0
Q ss_pred HHHHHHHcCCChhhhcc
Q psy7153 68 VRKLGLDLGLTPEVVMR 84 (131)
Q Consensus 68 VR~Lg~~LGlP~~Ii~k 84 (131)
.+++|+.||++..-|.+
T Consensus 34 ~~eIA~~lgis~~TV~~ 50 (55)
T 2x48_A 34 VQQIANALGVSERKVRR 50 (55)
T ss_dssp HHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 56799999999887765
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.03 E-value=62 Score=20.13 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=20.6
Q ss_pred cccccccchHHHHHHHHHcCCChhhhc
Q psy7153 57 IEPLKDFHKDEVRKLGLDLGLTPEVVM 83 (131)
Q Consensus 57 iePL~~L~KdEVR~Lg~~LGlP~~Ii~ 83 (131)
++=-......+..+||+.|||++.-|.
T Consensus 22 F~~~~yp~~~~r~~LA~~l~L~e~qVq 48 (64)
T 2e19_A 22 YALNAQPSAEELSKIADSVNLPLDVVK 48 (64)
T ss_dssp HTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HhcCCCcCHHHHHHHHHHhCcChhhcC
Confidence 333456678888999999999987653
No 71
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.99 E-value=63 Score=20.30 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.2
Q ss_pred ccccchHHHHHHHHHcCCChhhh
Q psy7153 60 LKDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 60 L~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
-......|..+||+.|||++.-|
T Consensus 29 ~~yp~~~~r~~La~~l~l~~~qV 51 (80)
T 2dmq_A 29 NHNPDAKDLKQLAQKTGLTKRVL 51 (80)
T ss_dssp CSSCCHHHHHHHHHHTCCCHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCHHHh
Confidence 34678889999999999998765
No 72
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.97 E-value=62 Score=21.45 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.1
Q ss_pred cccchHHHHHHHHHcCCChhhh
Q psy7153 61 KDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 61 ~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
..+...|..+||+.+||++.-|
T Consensus 26 ~YPs~~er~~LA~~tgLte~qI 47 (76)
T 2ecc_A 26 QWARREDYQKLEQITGLPRPEI 47 (76)
T ss_dssp SSCCHHHHHHHHHHTCCCHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHh
Confidence 5678899999999999998765
No 73
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=20.91 E-value=62 Score=21.10 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=18.2
Q ss_pred cccchHHHHHHHHHcCCChhhh
Q psy7153 61 KDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 61 ~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
..+...+..+||+.|||++.-|
T Consensus 44 ~yp~~~~r~~La~~lgL~e~qV 65 (80)
T 1wh7_A 44 QKHDDVAVEQFCAETGVRRQVL 65 (80)
T ss_dssp CSSTTHHHHHHHHHSCCCHHHH
T ss_pred CCCCHHHHHHHHHHhCcCcCcc
Confidence 3556788999999999998865
No 74
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=20.86 E-value=61 Score=19.33 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=18.1
Q ss_pred cccchHHHHHHHHHcCCChhhh
Q psy7153 61 KDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 61 ~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
......|..+||..|||++.-|
T Consensus 24 ~yp~~~~r~~La~~l~l~~~qV 45 (60)
T 1jgg_A 24 NYVSRPRRCELAAQLNLPESTI 45 (60)
T ss_dssp SCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHH
Confidence 3567788899999999998755
No 75
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=20.70 E-value=63 Score=18.73 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=17.5
Q ss_pred ccchHHHHHHHHHcCCChhhh
Q psy7153 62 DFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 62 ~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
.....|..+||..|||++.-|
T Consensus 26 yp~~~~r~~La~~l~l~~~qV 46 (58)
T 3rkq_A 26 YLSAPERDQLASVLKLTSTQV 46 (58)
T ss_dssp SCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHHHhCcCHHHH
Confidence 566788899999999998654
No 76
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=20.68 E-value=63 Score=19.32 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=18.2
Q ss_pred cccchHHHHHHHHHcCCChhhh
Q psy7153 61 KDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 61 ~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
......|..+||..|||++.-|
T Consensus 26 ~yp~~~~r~~La~~l~l~~~qV 47 (61)
T 2hdd_A 26 RYLTERRRQQLSSELGLNEAQI 47 (61)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHH
Confidence 3567788899999999998755
No 77
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=20.65 E-value=64 Score=19.22 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=17.6
Q ss_pred ccchHHHHHHHHHcCCChhhh
Q psy7153 62 DFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 62 ~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
.....+..+||+.|||++.-|
T Consensus 23 yp~~~~r~~La~~l~l~~~qV 43 (60)
T 3a02_A 23 YPDVFTREELAMKIGLTEARI 43 (60)
T ss_dssp SCCHHHHHHHHHHHTSCHHHH
T ss_pred CcCHHHHHHHHHHHCcCHHHH
Confidence 566788899999999998755
No 78
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.32 E-value=63 Score=19.86 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=18.6
Q ss_pred cccchHHHHHHHHHcCCChhhh
Q psy7153 61 KDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 61 ~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
......|..+||+.|||++.-|
T Consensus 30 ~yp~~~~r~~LA~~l~l~~~qV 51 (70)
T 2dmu_A 30 KYPDVGTREQLARKVHLREEKV 51 (70)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHe
Confidence 4567889999999999998765
No 79
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=20.28 E-value=65 Score=22.85 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHcCCC-hhhhccCCCCCCCceeeeccCcccccccChHHHHHHHHHHHhhhhhhhhc
Q psy7153 63 FHKDEVRKLGLDLGLT-PEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKI 128 (131)
Q Consensus 63 L~KdEVR~Lg~~LGlP-~~Ii~k~PfpGPGLaiR~~g~~e~~l~~~y~~~d~iL~~~~~~~~~~~k~ 128 (131)
..++|++++...+|+| ++++++.-. ..|=++-... +. +.+.++..+++....+++|
T Consensus 39 ~~~~eL~~~~~~~g~p~~~l~n~~~~-----~yk~l~l~~~----~l-s~~~~~~lm~~~P~LikRP 95 (141)
T 1s3c_A 39 PSRDELVKLIADMGISVRALLRKNVE-----PYEQLGLAED----KF-TDDQLIDFMLQHPILINRP 95 (141)
T ss_dssp CCHHHHHHHHHHHTSCHHHHBCSSSH-----HHHHTTTTSS----CC-CHHHHHHHHHHSGGGBCSC
T ss_pred ccHHHHHHHhcccCCCHHHhccCCch-----hHHhcCCccc----cC-CHHHHHHHHHhCccceEcc
Confidence 5789999999999998 666654321 1111111111 11 3456777888777777766
No 80
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=20.09 E-value=64 Score=19.15 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.3
Q ss_pred cccchHHHHHHHHHcCCChhhh
Q psy7153 61 KDFHKDEVRKLGLDLGLTPEVV 82 (131)
Q Consensus 61 ~~L~KdEVR~Lg~~LGlP~~Ii 82 (131)
......|..+||..+||++.-|
T Consensus 28 ~yp~~~~r~~La~~~~l~~~qV 49 (61)
T 1akh_A 28 QSLNSKEKEEVAKKCGITPLQV 49 (61)
T ss_dssp SSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCcCHHHHHHHHHHHCcCHHHH
Confidence 4567888999999999998755
Done!