RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7153
(131 letters)
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 189 bits (483), Expect = 4e-58
Identities = 84/127 (66%), Positives = 100/127 (78%)
Query: 1 MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
+ E+ L P + L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPL
Sbjct: 356 IGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPL 415
Query: 61 KDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVE 120
KDFHKDEVR LG +LGL E+V RHPFPGPGLAIRVIC EE YI KD+ ET ++KI+ +
Sbjct: 416 KDFHKDEVRILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVAD 475
Query: 121 YDQMFKK 127
+ KK
Sbjct: 476 FSASVKK 482
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine
nucleotide biosy process, ligase; HET: XMP; 2.72A
{Plasmodium falciparum}
Length = 556
Score = 124 bits (313), Expect = 1e-34
Identities = 50/99 (50%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 2 EELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLK 61
+ +D N+T L QGTL PD+IES + N +D IKTHHN L + L + K+ EP K
Sbjct: 353 NNIDIDINKTFLLQGTLYPDIIESKC--SKNLSDTIKTHHNVGGLPKNL--KFKLFEPFK 408
Query: 62 DFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 100
KD+V+ L +L L E+ RHPFPGPGLAIRVI GE
Sbjct: 409 YLFKDDVKTLSRELNLPEEITNRHPFPGPGLAIRVI-GE 446
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella
burnetii}
Length = 527
Score = 119 bits (301), Expect = 7e-33
Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 4/88 (4%)
Query: 13 LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLG 72
L QGT+ PD+IESA + K +IKTHHN L + + K+IEPL++ KDEVRKLG
Sbjct: 334 LGQGTIYPDVIESAKT-KTGKGHIIKTHHNVGGLPLNM--ELKLIEPLRELFKDEVRKLG 390
Query: 73 LDLGLTPEVVMRHPFPGPGLAIRVICGE 100
L+LGL +++ RHPFPGPGLAIR++ GE
Sbjct: 391 LELGLPADLIYRHPFPGPGLAIRIL-GE 417
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding,
ATP binding, purine nucleotide biosynthetic pathway,
structural genomics; 2.10A {Thermus thermophilus} PDB:
2ywc_A*
Length = 503
Score = 118 bits (298), Expect = 1e-32
Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 6/88 (6%)
Query: 13 LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLG 72
L QGTL PD+IESA + A IK+HHN L L + +++EP + KDEVR+L
Sbjct: 312 LAQGTLYPDVIESAG---GHGAAKIKSHHNVGGLPEDL--EFELLEPFRLLFKDEVRELA 366
Query: 73 LDLGLTPEVVMRHPFPGPGLAIRVICGE 100
L LGL + +RHPFPGPGLA+RV+ GE
Sbjct: 367 LLLGLPDTLRLRHPFPGPGLAVRVL-GE 393
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphata transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia
coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 118 bits (298), Expect = 2e-32
Identities = 47/94 (50%), Positives = 64/94 (68%), Gaps = 16/94 (17%)
Query: 13 LCQGTLRPDLIESASHLASNKADVIKTHHN------DSPLIRALREQGKVIEPLKDFHKD 66
L QGT+ PD+IESA+ A+ KA VIK+HHN + + ++EPLK+ KD
Sbjct: 332 LAQGTIYPDVIESAAS-ATGKAHVIKSHHNVGGLPKEMKM--------GLVEPLKELFKD 382
Query: 67 EVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 100
EVRK+GL+LGL +++ RHPFPGPGL +RV+ GE
Sbjct: 383 EVRKIGLELGLPYDMLYRHPFPGPGLGVRVL-GE 415
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
pyrococcus horikoshii OT3, structural genomics, NPPSFA;
1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Length = 308
Score = 110 bits (278), Expect = 9e-31
Identities = 45/90 (50%), Positives = 55/90 (61%), Gaps = 15/90 (16%)
Query: 13 LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE--QGKVIEPLKDFHKDEVRK 70
L QGT+ PD IES IK+HHN + L E K+IEPL+D +KDEVR+
Sbjct: 124 LIQGTIAPDWIESQG--------KIKSHHN----VGGLPEKLNLKLIEPLRDLYKDEVRE 171
Query: 71 LGLDLGLTPEVVMRHPFPGPGLAIRVICGE 100
L LGL ++ R PFPGPGLA+RVI GE
Sbjct: 172 LAKFLGLPEKIYNRMPFPGPGLAVRVI-GE 200
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.010
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 65 KDEVRKLGLDLGL-TPEVVMRHPFPGPGLAIR 95
K ++KL L L + P LAI+
Sbjct: 19 KQALKKLQASLKLYADD-------SAPALAIK 43
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics,
PAT89, PSI-2, protein structure initiative; NMR
{Pseudomonas aeruginosa} SCOP: b.34.1.2
Length = 75
Score = 28.7 bits (65), Expect = 0.17
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 52 EQGKVIEPLKDFHKDEVRKLGLDLGLTP----EVVMRHPFPGPGLAIRV 96
++ ++L +GL P VV P P + +
Sbjct: 8 RSYRITGYSPAISNGYRQRL-FSMGLLPGAALRVVRIAPLGDP-IQVET 54
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid,
center for structural genomics O infectious diseases,
alpha beta; 2.40A {Vibrio cholerae}
Length = 279
Score = 29.3 bits (66), Expect = 0.29
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 57 IEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPG 89
+ PL +K +VR L LG ++V + P
Sbjct: 190 LAPLFGLNKRQVRLLAKTLGAPEQLVYKTPTAD 222
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate,
helical B glycoprotein, membrane protein; HET: NAG;
2.55A {Homo sapiens} PDB: 4ad7_A*
Length = 478
Score = 28.6 bits (63), Expect = 0.54
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 13/87 (14%)
Query: 40 HHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICG 99
HH+ L L QGK+ K EVR++ G + V + G L IC
Sbjct: 6 HHHHHDLYENLYFQGKLDPASKSRSCGEVRQIYGAKGFSLSDVPQAEISGEHLR---ICP 62
Query: 100 ----------EERYIEKDYSETQVLVK 116
EE + ++E + ++
Sbjct: 63 QGYTCCTSEMEENLANRSHAELETALR 89
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei}
Length = 285
Score = 28.5 bits (64), Expect = 0.59
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 57 IEPLKDFHKDEVRKLGLDLGLTPEVVMRHP 86
+ PL K VR L LG +V++ P
Sbjct: 190 VLPLAGLTKRRVRALARMLGADEPLVLKTP 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.65
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 8 PNQTLLCQGTLR--PDLIESASHLASNKADVIKTHHNDSPLIRALREQ 53
NQ + G LR + + + K D+I+ S + +
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL--QKSLSLEEVEGH 1894
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP;
1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A
1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 28.1 bits (63), Expect = 0.71
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 57 IEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPG 89
I PL +K + ++L L + + P
Sbjct: 181 INPLYRLNKRQGKQLLAALACPEHLYKKAPTAD 213
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide
alpha hydrolase-like, ATP- binding, ligase,
nucleotide-binding; HET: AMP; 1.85A {Francisella
tularensis subsp}
Length = 249
Score = 27.9 bits (63), Expect = 0.77
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 57 IEPLKDFHKDEVRKLGLDLGLTPEVVMRHP 86
I PL + K +V +LG L + ++ + P
Sbjct: 163 ILPLVNLKKSQVFELGKYLDVPKNILDKAP 192
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 27.9 bits (63), Expect = 0.95
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 57 IEPLKDFHKDEVRKLGLDLGLTPEVVMRHP 86
+ PL K + R L +LG + ++ P
Sbjct: 178 LLPLTGLTKRQGRTLLKELGAPERLYLKEP 207
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat
methyltransferase; alpha-beta, beta barrel, structural
genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus
pneumoniae}
Length = 376
Score = 27.1 bits (61), Expect = 1.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 55 KVIEPLKDFHKDEVRKLGLDLGL 77
K + PL K EVR+L + GL
Sbjct: 169 KTMFPLGHLEKPEVRRLAEEAGL 191
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Length = 203
Score = 27.1 bits (60), Expect = 1.7
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 24 ESASHLASNKADVIKTHHN--------DSPLIRAL--REQGKVIEPLKDFHKDEVRKL 71
++ + +++ ++ I++L R+ + I PL F +R L
Sbjct: 92 KTVLEILADEYSILADGTRRDDRVPKLSYSEIQSLEMRKNIQYITPLMGFGYKTLRHL 149
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
transferase/RNA complex; 3.10A {Escherichia coli} PDB:
2det_A 2deu_A*
Length = 380
Score = 27.1 bits (61), Expect = 1.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 55 KVIEPLKDFHKDEVRKLGLDLGL 77
+ + P+ + K +VRK+ DLGL
Sbjct: 177 QSLFPVGELEKPQVRKIAEDLGL 199
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 2.5
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 35/132 (26%)
Query: 1 MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKT-----HHNDSPLIRALREQGK 55
L P + P + S +A + D + T H N L +
Sbjct: 313 CRPQDL-PREV--LTTN--PRRL---SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 56 VIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLV 115
V+EP E RK+ L + P P L++ + + S+ V+V
Sbjct: 365 VLEP------AEYRKMFDRLSVFPPSA---HIPTILLSL-------IWFDVIKSDVMVVV 408
Query: 116 KIIVEYDQMFKK 127
+++ K
Sbjct: 409 ------NKLHKY 414
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 26.3 bits (58), Expect = 3.0
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 91 GLAIRVICGEERYIEKDYSETQVLVKIIVEYDQM 124
G RVI +E+ E++ +E ++VKI VE+
Sbjct: 154 GAVNRVIIYQEKQGEEEDAE--IIVKIFVEFSIA 185
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown
function; 2.60A {Thermus thermophilus}
Length = 242
Score = 25.7 bits (57), Expect = 4.3
Identities = 5/31 (16%), Positives = 8/31 (25%), Gaps = 6/31 (19%)
Query: 17 TLRPDLIESASHLASNKADVIKTHHNDSPLI 47
+ A + D + HH L
Sbjct: 44 DAGEAIFRKA---LEEEVDFLIVHH---GLF 68
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2
project, S2F, structural genomics, unknown function;
2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Length = 247
Score = 25.7 bits (57), Expect = 4.5
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 6/31 (19%)
Query: 17 TLRPDLIESASHLASNKADVIKTHHNDSPLI 47
T L++ A AD + HH
Sbjct: 43 TASQALLDEA---VRLGADAVIVHH---GYF 67
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding,
prokaryotic SH3 stenotrophomonus maltophilia, metal
transport; 1.70A {Stenotrophomonas maltophilia}
Length = 85
Score = 24.6 bits (54), Expect = 6.6
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 52 EQGKVIEPLKDFHKDEVRKLGLDLGLTP----EVVMRHPFPGPGLAIRV 96
V D + + +LG +V + P G L ++V
Sbjct: 11 TSAVVESVQDLHANDAIARRLRELGFVKGEEVRMVAKGPVGGEPLLVQV 59
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 25.2 bits (55), Expect = 6.7
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 36 VIKTHHNDSPL---IRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGL 92
++ +S L +E+ + + F +E+ L G V++ F P
Sbjct: 136 IVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSE 195
Query: 93 AIRVICGEERYIEKDY 108
+ +E Y E +
Sbjct: 196 LSEIEPVKEGYGEGAF 211
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA
binding and regulatory domai binding protein; 2.20A
{Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB:
1iz1_A
Length = 294
Score = 25.2 bits (56), Expect = 7.4
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 73 LDLGLTPEVVMRHPFPGPGLAIRVICGEERYI 104
+ +G R PG+ I I +E
Sbjct: 141 IHVGF-----SRFFPRHPGIEIVNI-AQEDLY 166
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer,
THDP cofactor, oxidoreductase; HET: TDP; 2.40A
{Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 25.4 bits (56), Expect = 7.5
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 34 ADVIKTHHNDSPLIRALREQGKVIEPL-KDFHKDEVRKL 71
D T L+R L EQG P +D +R+
Sbjct: 41 VDAADTADLSYSLVRVLDEQGDAQGPWAEDIDPQILRQG 79
>3epo_A Thiamine biosynthesis protein THIC; alpha-beta barrel, SAM
superfamily, biosynthetic protein; HET: MP5; 2.10A
{Caulobacter crescentus} PDB: 3epm_A* 3epn_A*
Length = 612
Score = 25.5 bits (56), Expect = 7.7
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 49 ALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMR 84
A+RE + + E + +TPE V +
Sbjct: 150 AIRENLRREQDRPCVRDGEDFGASIPDFVTPEFVRQ 185
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional
activator, LYSR-type transcripti regulator; 1.80A
{Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A
2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Length = 312
Score = 25.3 bits (56), Expect = 7.8
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 73 LDLGLTPEVVMRHPFPGPGLAIRVICGEERYI 104
+D G R P + ++ ER +
Sbjct: 140 IDAGF-----GRLKISDPAIKHSLL-RNERLM 165
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
NPPSFA, national project on Pro structural and
functional analyses; 2.10A {Pyrococcus horikoshii}
Length = 257
Score = 24.8 bits (55), Expect = 9.0
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 57 IEPLKDFHKDEVRKLGLDLGLTPEVVMRHP 86
P+ + +K EV ++ +G+ +V + P
Sbjct: 150 YAPIINLYKTEVWEIAKRIGVPERIVKKKP 179
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 24.8 bits (55), Expect = 9.5
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 57 IEPLKDFHKDEVRKLGLDLGLTPEVVMRHP 86
P+ +K E+ L L L + + P
Sbjct: 154 FNPIGSLYKSEIYALAKYLNLHENFIKKAP 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.404
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,168,872
Number of extensions: 128921
Number of successful extensions: 318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 43
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.6 bits)