RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7153
         (131 letters)



>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
           {Escherichia coli [TaxId: 562]}
          Length = 197

 Score = 58.2 bits (139), Expect = 5e-12
 Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 28  HLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPF 87
             A+ KA VIK+HHN   L + +  +  ++EPLK+  KDEVRK+GL+LGL  +++ RHPF
Sbjct: 139 ASATGKAHVIKSHHNVGGLPKEM--KMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPF 196

Query: 88  P 88
           P
Sbjct: 197 P 197


>d2h3ja1 b.34.1.2 (A:1-75) Hypothetical protein PA4359
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 75

 Score = 25.8 bits (57), Expect = 0.75
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 6/49 (12%)

Query: 52 EQGKVIEPLKDFHKDEVRKLGLDLGLTP----EVVMRHPFPGPGLAIRV 96
             ++            ++L   +GL P     VV   P   P + +  
Sbjct: 8  RSYRITGYSPAISNGYRQRL-FSMGLLPGAALRVVRIAPLGDP-IQVET 54


>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
          module {Pseudomonas putida [TaxId: 303]}
          Length = 407

 Score = 26.0 bits (56), Expect = 1.7
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 38 KTHHNDSPLIRALREQGKVIEPLK-DFHKDEVRKL 71
           T      L+R L EQG    P   D     +R+ 
Sbjct: 45 DTADLSYSLVRVLDEQGDAQGPWAEDIDPQILRQG 79


>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation
           domain {Escherichia coli [TaxId: 562]}
          Length = 121

 Score = 25.1 bits (55), Expect = 2.3
 Identities = 8/12 (66%), Positives = 10/12 (83%), Gaps = 1/12 (8%)

Query: 89  GPGLAIRVICGE 100
           GPGL +RV+ GE
Sbjct: 1   GPGLGVRVL-GE 11


>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
           domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 168

 Score = 24.4 bits (52), Expect = 4.4
 Identities = 6/30 (20%), Positives = 16/30 (53%)

Query: 23  IESASHLASNKADVIKTHHNDSPLIRALRE 52
           + S + +A   ++++    N S ++ A+ E
Sbjct: 138 MGSGTAVAKTASEMVLADDNFSTIVAAVEE 167


>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
           C-terminal domain {Bacillus anthracis [TaxId: 1392]}
          Length = 218

 Score = 24.1 bits (51), Expect = 6.7
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 55  KVIEPLKDFHKDEVRKLGLDLGLTPEVVMRHPFPGPGL 92
            VI PL    K E+ K+  ++G   ++ +R       +
Sbjct: 138 PVIRPLITMDKLEIIKIAEEIGT-YDISIRPYEDCCTV 174


>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 23.1 bits (49), Expect = 8.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 40 HHNDSPLIRALREQGKVIEPLKDFHKDEVRK 70
          HH+  P    L+E   V+E      + E +K
Sbjct: 5  HHHLVPRGSILKEVTSVVEQAWKLPESERKK 35


>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14,
           HRV-14 [TaxId: 12131]}
          Length = 460

 Score = 23.8 bits (51), Expect = 9.7
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 33  KADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDEVRKL 71
           K D++     D+  ++   ++  +  PL  + KDE+R +
Sbjct: 127 KRDILNKETQDTEKMKFYLDKYGIDLPLVTYIKDELRSV 165


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 521,803
Number of extensions: 23733
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 9
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.3 bits)