BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7154
(385 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357628760|gb|EHJ77963.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor [Danaus
plexippus]
Length = 466
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/279 (75%), Positives = 238/279 (85%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 176 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 235
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL+DDIY F S F RLDEVED+LT NR+W+QRTKDVG+V+A+DALNYGFSGVM
Sbjct: 236 SLDMPLGLMDDIYEFASKFGERLDEVEDVLTTNRIWVQRTKDVGVVTAQDALNYGFSGVM 295
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y+ EFD+PIGT+G+ +I ++EMRQSLRI++Q +N+MP
Sbjct: 296 LRGSGIKWDLRKTQPYDAYDKVEFDVPIGTNGDCYDRYLIRVEEMRQSLRIIDQCLNQMP 355
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEV+TDD K++ PSR EMK GY VPPGATYTAVEAPKGEFGVYLV
Sbjct: 356 PGEVKTDDAKLTPPSREEMKTSMEALIHHFKLFTQGYAVPPGATYTAVEAPKGEFGVYLV 415
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG SKPYRCKIKAPGFAHLAALEKIGK S LADIVAII
Sbjct: 416 SDGGSKPYRCKIKAPGFAHLAALEKIGKNSMLADIVAII 454
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/66 (92%), Positives = 63/66 (95%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE P+RAKY
Sbjct: 113 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEAPIRAKY 172
Query: 370 IRVMFT 375
IR +F
Sbjct: 173 IRTLFA 178
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VLY D K +N + P EKQ++NM++NFGPQHPAAHGVL L E+
Sbjct: 54 VLYSDGRPELMKHPPYNSIVAPAEKQVKNMILNFGPQHPAAHGVLRLVLEL 104
>gi|195402219|ref|XP_002059704.1| GJ13840 [Drosophila virilis]
gi|194155918|gb|EDW71102.1| GJ13840 [Drosophila virilis]
gi|263359639|gb|ACY70475.1| hypothetical protein DVIR88_6g0012 [Drosophila virilis]
Length = 468
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 204/279 (73%), Positives = 239/279 (85%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 178 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL++DIY F S F+ RLDEVED+L+ NR+W+QRT+D+GIVSAE+ALNYGFSGVM
Sbjct: 238 SLDMPLGLMNDIYEFASKFAERLDEVEDVLSTNRIWVQRTEDIGIVSAEEALNYGFSGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y +FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 298 LRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQMP 357
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD K++TP+RSEMK GYPVPPGATYTA+EAPKGEFGVYL+
Sbjct: 358 AGEIKTDDAKVTTPTRSEMKTSMEALIHHFKLFSQGYPVPPGATYTAIEAPKGEFGVYLI 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 418 SDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 456
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 64/66 (96%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY
Sbjct: 115 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 174
Query: 370 IRVMFT 375
IR +F
Sbjct: 175 IRTLFA 180
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + WK+ WN +VPVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 56 VMYPDQVTSLWKVPPWNSKMVPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 106
>gi|114051447|ref|NP_001040366.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 [Bombyx mori]
gi|95102646|gb|ABF51261.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor [Bombyx
mori]
Length = 466
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/279 (74%), Positives = 236/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITR+LNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 176 LFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 235
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL+DDIY F S F+ R+DEVED+LT NR+W+QRTKD+G+V+A+DALNYGFSGVM
Sbjct: 236 SLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVM 295
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y EFD+PIGTHG+ + ++EMRQSLRI+EQ +N MP
Sbjct: 296 LRGSGIKWDLRKTQPYDAYPFVEFDVPIGTHGDCYDRYLCRVEEMRQSLRIIEQCLNDMP 355
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEV+TDD K++ PSR EMK GY VPPG+TYTAVEAPKGEFG+YLV
Sbjct: 356 PGEVKTDDAKLTPPSREEMKTSMEALIHHFKLFTQGYQVPPGSTYTAVEAPKGEFGIYLV 415
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG SKPYRCKIKAPGFAHLAALEKIG+ S LADIVAII
Sbjct: 416 SDGGSKPYRCKIKAPGFAHLAALEKIGRNSMLADIVAII 454
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 66/73 (90%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+
Sbjct: 106 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 165
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIR +F
Sbjct: 166 VPLRAKYIRTLFA 178
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ K + +N + P EK++RNM++NFGPQHPAAHGVL L E+
Sbjct: 54 VMYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLEL 104
>gi|170051629|ref|XP_001861851.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial [Culex
quinquefasciatus]
gi|167872807|gb|EDS36190.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial [Culex
quinquefasciatus]
Length = 469
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/285 (72%), Positives = 238/285 (83%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNHIMA+GTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY
Sbjct: 173 AKYIRVLFAEITRILNHIMAIGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAY 232
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV+ D+P+GLLDDIY F S F RLDEVED+LT NR+W+QRT+D+GIVSAEDALNY
Sbjct: 233 VRPGGVSQDMPLGLLDDIYEFASKFGERLDEVEDVLTTNRIWVQRTQDIGIVSAEDALNY 292
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGIKWDLRK QPYD Y+ EFD+PIGT G+ + ++EMRQSLRI++Q
Sbjct: 293 GFSGVMLRGSGIKWDLRKSQPYDAYDQVEFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQ 352
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G+V+TDD K+ TPSRSEMK GY VPPG+TYTA+EAPKGE
Sbjct: 353 CLNKMPAGDVKTDDAKLCTPSRSEMKTSMEALIHHFKLFTQGYQVPPGSTYTAIEAPKGE 412
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+S+PYRCKIKAPGFAHLAAL+ +GK LADIVAII
Sbjct: 413 FGVYLVADGSSRPYRCKIKAPGFAHLAALDMVGKHHMLADIVAII 457
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/66 (92%), Positives = 65/66 (98%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI++P+RAKY
Sbjct: 116 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDIPMRAKY 175
Query: 370 IRVMFT 375
IRV+F
Sbjct: 176 IRVLFA 181
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ +KWKI WN + PVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 57 VMYPDEVTSKWKIPPWNSKIAPVEKTVRNVKLNFGPQHPAAHGVLRLVLEL 107
>gi|332373630|gb|AEE61956.1| unknown [Dendroctonus ponderosae]
Length = 461
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/282 (73%), Positives = 236/282 (83%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAE+TRILNHIM + THALD+GA+TPFFWLFEEREKMMEFYER SGARMHAAYVRP
Sbjct: 168 IRVLFAELTRILNHIMGICTHALDIGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRP 227
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGVALD+P+GL+DDI+ F S F+ RLDEVED+LT NRLW+QRT+D+GIV+AEDALNYGFS
Sbjct: 228 GGVALDMPLGLMDDIFEFASKFNERLDEVEDLLTSNRLWVQRTEDIGIVTAEDALNYGFS 287
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRK QPYD Y+ EFDIPIGT G+ + ++EMRQSLRI+ Q +N
Sbjct: 288 GVMLRGSGIKWDLRKTQPYDAYDKVEFDIPIGTKGDCYDRYLCRLEEMRQSLRIIHQCLN 347
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP GE++TDD K+S PSR EMK GY VPPG+TYTAVEAPKGEFGV
Sbjct: 348 QMPPGEIKTDDAKVSPPSRGEMKTSMEALIHHFKLFTQGYQVPPGSTYTAVEAPKGEFGV 407
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDGTSKPYRCKIKAPGFAHLAAL+K+GK LADIVAII
Sbjct: 408 YLVSDGTSKPYRCKIKAPGFAHLAALDKVGKNHMLADIVAII 449
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 68/73 (93%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQC+SLAVEKLLNI+
Sbjct: 101 GEIVRRSDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCFSLAVEKLLNID 160
Query: 363 VPLRAKYIRVMFT 375
VP+RAKYIRV+F
Sbjct: 161 VPIRAKYIRVLFA 173
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ W + W++ PVEK+++N+ INFGPQHPAAHGVL L E+
Sbjct: 49 VMYPDETTKHWALPGWHNEKAPVEKEVKNVTINFGPQHPAAHGVLRLVLEL 99
>gi|158286683|ref|XP_308864.3| AGAP006891-PA [Anopheles gambiae str. PEST]
gi|157020586|gb|EAA03959.4| AGAP006891-PA [Anopheles gambiae str. PEST]
Length = 471
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/287 (72%), Positives = 239/287 (83%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LFAEITRILNHIMA+GTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHA
Sbjct: 173 PRAKYIRVLFAEITRILNHIMAIGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHA 232
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGVA DIP+GLLDDIY F F RLDEVED+LT NR+W+QRT ++G+V+AEDAL
Sbjct: 233 AYVRPGGVAQDIPLGLLDDIYDFAVRFGERLDEVEDVLTSNRIWVQRTVNIGVVTAEDAL 292
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYGFSGVMLRGSGIKWDLRKVQPYD Y+ EFD+PIGT G+ + ++EMRQSLRI+
Sbjct: 293 NYGFSGVMLRGSGIKWDLRKVQPYDAYDQMEFDVPIGTKGDCYDRYLCRIEEMRQSLRII 352
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+Q +N+MP GE++TDD KIS PSR+EMK GY VPPG+TYTAVEAPK
Sbjct: 353 DQCLNRMPAGEIKTDDGKISPPSRTEMKQSMEALIHHFKLFTQGYQVPPGSTYTAVEAPK 412
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKIKAPGFAHLAAL+KIG+ LAD+VAII
Sbjct: 413 GEFGVYLVSDGSSQPYRCKIKAPGFAHLAALDKIGRHHMLADVVAII 459
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/66 (92%), Positives = 63/66 (95%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE+P RAKY
Sbjct: 118 DPHIGLLHRGTEKLIEYKTYVQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEIPPRAKY 177
Query: 370 IRVMFT 375
IRV+F
Sbjct: 178 IRVLFA 183
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD +WK+ WN + PVEKQ+RN+ INFGPQHPAAHGVL L E+
Sbjct: 59 VMYPDHVTARWKLPPWNSKIAPVEKQVRNLKINFGPQHPAAHGVLRLVLEL 109
>gi|193632011|ref|XP_001947632.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Acyrthosiphon pisum]
Length = 462
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/279 (73%), Positives = 232/279 (83%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITR+LNHIMA+GTHALD+GAMTPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 172 LFAEITRLLNHIMAIGTHALDIGAMTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 231
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ DIP+GL+DDIY F S F R+DE EDMLT N +WI RT+D+G+VSAEDALN GFSGVM
Sbjct: 232 SQDIPLGLMDDIYQFSSKFGERIDETEDMLTNNGIWIARTRDIGVVSAEDALNLGFSGVM 291
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLR+ QPYD Y +FD+PIG G+ + + EMRQSLRI+EQ +N+MP
Sbjct: 292 LRGSGIKWDLRQTQPYDAYHLVDFDVPIGARGDCYDRYLCRVAEMRQSLRIIEQCLNQMP 351
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDDMK+STPSRSEMK GY VPPGATYTA+EAPKGEFGVYLV
Sbjct: 352 AGEIKTDDMKVSTPSRSEMKNSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLV 411
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGTSKPYRCKIKAPGFAHLAAL+KIGK FLADIVAII
Sbjct: 412 SDGTSKPYRCKIKAPGFAHLAALDKIGKKHFLADIVAII 450
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 67/73 (91%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+
Sbjct: 102 GEVVIRADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 161
Query: 363 VPLRAKYIRVMFT 375
+PLRAKYIR +F
Sbjct: 162 IPLRAKYIRTLFA 174
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+Y +E WK+ WN N P+E++++NM INFGPQHPAAHGVL L E+
Sbjct: 50 VMYVPEEAGDWKVEAWNSNPQPIEREVKNMTINFGPQHPAAHGVLRLVLELA 101
>gi|312383663|gb|EFR28661.1| hypothetical protein AND_03103 [Anopheles darlingi]
Length = 473
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/282 (72%), Positives = 237/282 (84%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RP
Sbjct: 180 IRVLFGEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRP 239
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+ D+P+GLLDDIY F S F+ RLDEVED+LT NR+W+QRT D+GIVSAEDALNYGFS
Sbjct: 240 GGVSQDLPLGLLDDIYEFASKFAERLDEVEDVLTTNRIWVQRTVDIGIVSAEDALNYGFS 299
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRK QPYD Y+ EFD+PIGT G+ + ++EMRQSLRI++Q +N
Sbjct: 300 GVMLRGSGIKWDLRKAQPYDAYDRVEFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLN 359
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP GE++TDD K++ PSR+EMK GY VPPGATYTAVEAPKGEFG+
Sbjct: 360 QMPAGEIKTDDAKLTPPSRAEMKHSMEALIHHFKLFTQGYQVPPGATYTAVEAPKGEFGI 419
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDG+SKPYRCKIKAPGFAHLAAL+K+G+ LAD+VAII
Sbjct: 420 YLVSDGSSKPYRCKIKAPGFAHLAALDKVGRHHMLADVVAII 461
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/65 (95%), Positives = 65/65 (100%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI++PLRAKY
Sbjct: 120 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKY 179
Query: 370 IRVMF 374
IRV+F
Sbjct: 180 IRVLF 184
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ ++WK+ WN + PVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 61 VMYPDEVTSRWKLPPWNSKIAPVEKTVRNLSLNFGPQHPAAHGVLRLVLEL 111
>gi|405961731|gb|EKC27484.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Crassostrea gigas]
Length = 1645
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/375 (57%), Positives = 258/375 (68%), Gaps = 71/375 (18%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVL-------------- 49
VLYPD E + + +D ++ ++ N +NFGPQHPAAHGVL
Sbjct: 57 TVLYPDPEISNYYPPELSDE--EIDLKVSNFTLNFGPQHPAAHGVLRLIATLQNEALPYF 114
Query: 50 -----------------------------------LLFAEITRILNHIMAVGTHALDVGA 74
LF EITRILNH+M++GTHALDVGA
Sbjct: 115 DRLDYVSMMCNEQAYSLAVEKLLNIDVPIRAKYIRTLFGEITRILNHLMSIGTHALDVGA 174
Query: 75 MTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLD 134
++PFFWLFEEREK+MEFYERASGARMHAAYVRPGGVALD+P+GL+DDIY FI+ F+ RL+
Sbjct: 175 LSPFFWLFEEREKLMEFYERASGARMHAAYVRPGGVALDLPLGLMDDIYDFITKFNLRLE 234
Query: 135 EVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEF 194
E+E++LTENR+W+ RT D+G+V+A+DAL +GFSGVMLRGSGI WDLRK QPYD Y+ EF
Sbjct: 235 ELENVLTENRIWVMRTIDIGVVTAQDALAWGFSGVMLRGSGIMWDLRKTQPYDAYDRVEF 294
Query: 195 DIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---- 245
D+PIG HG+ + M+EMRQS+RI+ Q +N MP GEVR DD KI P R+EMK
Sbjct: 295 DVPIGIHGDCYDRYLCRMEEMRQSVRIIHQCLNDMPPGEVRADDNKIVPPKRAEMKESME 354
Query: 246 -----------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALE 294
GY VPPG+TYTAVEAPKGEFGVYLVSDGT+KPYRCKIKAPGFAHLAAL+
Sbjct: 355 ALIHHFKLYTEGYNVPPGSTYTAVEAPKGEFGVYLVSDGTNKPYRCKIKAPGFAHLAALD 414
Query: 295 KIGKGSFLADIVAII 309
I K LAD+VAII
Sbjct: 415 HIAKNHMLADLVAII 429
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 42/44 (95%)
Query: 331 QALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMF 374
+ALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+VP+RAKYIR +F
Sbjct: 109 EALPYFDRLDYVSMMCNEQAYSLAVEKLLNIDVPIRAKYIRTLF 152
>gi|24638644|ref|NP_651926.1| CG1970, isoform A [Drosophila melanogaster]
gi|442614419|ref|NP_001259064.1| CG1970, isoform B [Drosophila melanogaster]
gi|22759353|gb|AAF59336.2| CG1970, isoform A [Drosophila melanogaster]
gi|189182170|gb|ACD81861.1| LD47962p [Drosophila melanogaster]
gi|440218151|gb|AGB96554.1| CG1970, isoform B [Drosophila melanogaster]
Length = 468
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/279 (73%), Positives = 236/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 178 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL+DDIY F S F+ RLDEVED+LT NR+W+QRT+D+GIV+AE+ALNYGFSGVM
Sbjct: 238 SLDMPLGLMDDIYEFASKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 298 LRGSGIKWDLRKQQPYDAYNLVNFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMP 357
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD K++ PSRSEMK GY VPPGATYTA+EAPKGEFGVYL+
Sbjct: 358 AGEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLI 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 418 SDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 456
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/65 (95%), Positives = 64/65 (98%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+VPLRAKY
Sbjct: 115 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 174
Query: 370 IRVMF 374
IR +F
Sbjct: 175 IRTLF 179
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + W + WN + PVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 56 VMYPDEVTSLWTVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 106
>gi|194913546|ref|XP_001982722.1| GG16443 [Drosophila erecta]
gi|190647938|gb|EDV45241.1| GG16443 [Drosophila erecta]
Length = 468
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/279 (72%), Positives = 237/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 178 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL+DDIY F S F+ RLDEVED+LT NR+W+QRT+D+GIV+AE+ALNYGFSGVM
Sbjct: 238 SLDMPLGLMDDIYEFASKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y +FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 298 LRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMP 357
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE+++DD K++ PSRSEMK GY VPPGATYTA+EAPKGEFGVYL+
Sbjct: 358 AGEIKSDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLI 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 418 SDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 456
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/65 (95%), Positives = 64/65 (98%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+VPLRAKY
Sbjct: 115 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 174
Query: 370 IRVMF 374
IR +F
Sbjct: 175 IRTLF 179
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + WK+ WN + PVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 56 VMYPDEVTSLWKVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 106
>gi|195133988|ref|XP_002011420.1| GI14091 [Drosophila mojavensis]
gi|193912043|gb|EDW10910.1| GI14091 [Drosophila mojavensis]
Length = 449
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/279 (73%), Positives = 236/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 159 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 218
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GLLDDIY F S F RLDEVED+L+ NR+W+QRT+D+GIVSAE+ALNYGFSGVM
Sbjct: 219 SLDMPLGLLDDIYEFASKFGERLDEVEDVLSTNRIWVQRTEDIGIVSAEEALNYGFSGVM 278
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y +FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 279 LRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQMP 338
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEV+TDD K++ PSRSEMK GY VPPGATYTA+EAPKGEFGVYL+
Sbjct: 339 PGEVKTDDAKVTPPSRSEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLI 398
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 399 SDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 437
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/66 (93%), Positives = 64/66 (96%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+VPLRAKY
Sbjct: 96 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 155
Query: 370 IRVMFT 375
IR +F
Sbjct: 156 IRTLFA 161
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + WK+ WN +VPVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 37 VMYPDEVTSLWKVPPWNSKVVPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 87
>gi|195064427|ref|XP_001996567.1| GH23924 [Drosophila grimshawi]
gi|193892113|gb|EDV90979.1| GH23924 [Drosophila grimshawi]
Length = 469
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/279 (72%), Positives = 237/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNHIMA+GTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 179 LFGEITRILNHIMAIGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 238
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL+DDIY F S F+ RLDEVED+L+ NR+W+QRT+D+GIVSAE+ALNYGFSGVM
Sbjct: 239 SLDMPLGLMDDIYEFASKFAERLDEVEDVLSTNRIWVQRTEDIGIVSAEEALNYGFSGVM 298
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y+ +FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 299 LRGSGIKWDLRKQQPYDAYDLVDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQMP 358
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD K++ P+RSEMK GY VPPGATYTA+EAPKGEFGVYLV
Sbjct: 359 AGEIKTDDAKVTPPTRSEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLV 418
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 419 SDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 457
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/65 (96%), Positives = 64/65 (98%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY
Sbjct: 116 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 175
Query: 370 IRVMF 374
IR +F
Sbjct: 176 IRTLF 180
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + WK+ WN +VPVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 57 VMYPDEVTSLWKVPPWNSKVVPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 107
>gi|195469361|ref|XP_002099606.1| GE14510 [Drosophila yakuba]
gi|194185707|gb|EDW99318.1| GE14510 [Drosophila yakuba]
Length = 468
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/279 (73%), Positives = 236/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 178 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+PIGL+DDIY F F+ RLDEVED+LT NR+W+QRT+D+GIV+AE+ALNYGFSGVM
Sbjct: 238 SLDMPIGLMDDIYEFALKFAERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNYGFSGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y +FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 298 LRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMP 357
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD K++ PSRSEMK GY VPPGATYTA+EAPKGEFGVYL+
Sbjct: 358 AGEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLI 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 418 SDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 456
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/65 (95%), Positives = 64/65 (98%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+VPLRAKY
Sbjct: 115 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 174
Query: 370 IRVMF 374
IR +F
Sbjct: 175 IRTLF 179
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + WK+ WN + PVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 56 VMYPDEVTSLWKVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 106
>gi|195172536|ref|XP_002027053.1| GL18172 [Drosophila persimilis]
gi|194112831|gb|EDW34874.1| GL18172 [Drosophila persimilis]
Length = 452
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/279 (73%), Positives = 237/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 162 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 221
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+PIGL+DDIY F S F+ RLDEVED+L+ NR+W+QRT+D+GIV+AE+ALNYGFSGVM
Sbjct: 222 SLDMPIGLMDDIYEFASKFAERLDEVEDVLSTNRIWVQRTEDIGIVTAEEALNYGFSGVM 281
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y +FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 282 LRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQMP 341
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD K++ PSRSEMK G+ VPPGATYTA+EAPKGEFGVYLV
Sbjct: 342 AGEIKTDDAKVTPPSRSEMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGVYLV 401
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 402 SDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 440
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/66 (93%), Positives = 64/66 (96%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+VPLRAKY
Sbjct: 99 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 158
Query: 370 IRVMFT 375
IR +F
Sbjct: 159 IRTLFA 164
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + WK+ WN + PVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 40 VMYPDEITSLWKVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 90
>gi|198458678|ref|XP_002136151.1| GA25154 [Drosophila pseudoobscura pseudoobscura]
gi|198142383|gb|EDY71141.1| GA25154 [Drosophila pseudoobscura pseudoobscura]
Length = 440
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/279 (73%), Positives = 237/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 150 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 209
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+PIGL+DDIY F S F+ RLDEVED+L+ NR+W+QRT+D+GIV+AE+ALNYGFSGVM
Sbjct: 210 SLDMPIGLMDDIYEFASKFAERLDEVEDVLSTNRIWVQRTEDIGIVTAEEALNYGFSGVM 269
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y +FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 270 LRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRIEEMRQSLRIIDQCLNQMP 329
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD K++ PSRSEMK G+ VPPGATYTA+EAPKGEFGVYLV
Sbjct: 330 AGEIKTDDAKVTPPSRSEMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGVYLV 389
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 390 SDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 428
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/66 (93%), Positives = 64/66 (96%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+VPLRAKY
Sbjct: 87 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 146
Query: 370 IRVMFT 375
IR +F
Sbjct: 147 IRTLFA 152
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + WK+ WN + PVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 28 VMYPDEITSLWKVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 78
>gi|194769679|ref|XP_001966929.1| GF19015 [Drosophila ananassae]
gi|190618028|gb|EDV33552.1| GF19015 [Drosophila ananassae]
Length = 470
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/279 (73%), Positives = 236/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 180 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 239
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LDIP+GLLDDIY F S FS RLDEVED+LT NR+W+QRT+D+GIV+AE+ALN+GFSGVM
Sbjct: 240 SLDIPLGLLDDIYEFSSKFSERLDEVEDVLTTNRIWVQRTEDIGIVTAEEALNFGFSGVM 299
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y +FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 300 LRGSGIKWDLRKQQPYDAYNLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMP 359
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD K++ PSR EMK GY VPPGATYTA+EAPKGEFGVY+V
Sbjct: 360 SGEIKTDDAKVAPPSRFEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYIV 419
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 420 SDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 458
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 64/66 (96%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY
Sbjct: 117 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 176
Query: 370 IRVMFT 375
IR +F
Sbjct: 177 IRTLFA 182
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD + WK+ WN ++PVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 58 VMYPDDITSLWKVPPWNSKVIPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 108
>gi|195354391|ref|XP_002043681.1| GM26777 [Drosophila sechellia]
gi|194128869|gb|EDW50912.1| GM26777 [Drosophila sechellia]
Length = 468
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/279 (72%), Positives = 235/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 178 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL+DDIY F S FS RLDEVED+LT NR+W+QRT+D+GIV+A++ALNYGFSGVM
Sbjct: 238 SLDMPLGLMDDIYEFASKFSERLDEVEDVLTTNRIWVQRTEDIGIVTADEALNYGFSGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 298 LRGSGIKWDLRKQQPYDAYHLVNFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMP 357
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD K++ PSRSEMK GY VPPG TYTA+EAPKGEFGVYL+
Sbjct: 358 AGEIKTDDAKVAPPSRSEMKTSMEALIHHFKLFTQGYQVPPGTTYTAIEAPKGEFGVYLI 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 418 SDGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 456
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/65 (95%), Positives = 64/65 (98%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+VPLRAKY
Sbjct: 115 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 174
Query: 370 IRVMF 374
IR +F
Sbjct: 175 IRTLF 179
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + W++ WN + PVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 56 VMYPDEVTSLWRVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 106
>gi|91084535|ref|XP_972884.1| PREDICTED: similar to CG1970 CG1970-PA [Tribolium castaneum]
gi|270009249|gb|EFA05697.1| hypothetical protein TcasGA2_TC015217 [Tribolium castaneum]
Length = 466
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/279 (73%), Positives = 234/279 (83%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 176 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 235
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL+DDIY F S F RLDEVED+LT NR+W+QRT+D+G+VSAEDALN GFSGVM
Sbjct: 236 SLDMPLGLMDDIYEFASKFGERLDEVEDVLTTNRIWVQRTQDIGVVSAEDALNLGFSGVM 295
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRKVQPYD Y+ +FD+PIG G+ + ++EMRQSLRI++Q +N MP
Sbjct: 296 LRGSGIKWDLRKVQPYDAYDLVDFDVPIGVKGDCYDRYLCRVEEMRQSLRIIDQCLNNMP 355
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD K++ PSR+EMK GY VPPGATYTA+EAPKGEFGVYLV
Sbjct: 356 PGEIKTDDAKLTPPSRAEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLV 415
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG SKPYRCKIKAPGFAHLAALEK+GK LADIVAII
Sbjct: 416 SDGGSKPYRCKIKAPGFAHLAALEKVGKNHMLADIVAII 454
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 67/73 (91%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+
Sbjct: 106 GEMVRRADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 165
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIR +F
Sbjct: 166 VPLRAKYIRTLFA 178
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ +KW + WN PVE+ ++N+ +NFGPQHPAAHGVL L E+
Sbjct: 54 VMYPDEVTSKWVLPPWNAQKAPVERSVKNLTLNFGPQHPAAHGVLRLVIEL 104
>gi|195450785|ref|XP_002072632.1| GK13585 [Drosophila willistoni]
gi|194168717|gb|EDW83618.1| GK13585 [Drosophila willistoni]
Length = 469
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/279 (72%), Positives = 237/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RPGGV
Sbjct: 179 LFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 238
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL+DDIY F S F+ RLDEVED+L+ NR+W+QRT+D+GIV+AE+ALNYGFSGVM
Sbjct: 239 SLDMPLGLMDDIYEFASKFAERLDEVEDVLSTNRIWVQRTEDIGIVTAEEALNYGFSGVM 298
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y +FD+PIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 299 LRGSGIKWDLRKQQPYDAYHLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMP 358
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD K++ PSR+EMK GY VPPGATYTA+EAPKGEFGVYLV
Sbjct: 359 AGEIKTDDAKVTPPSRAEMKTSMEALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLV 418
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+DG+S+PYRCKIKAPGFAHLAALEKIGK LAD+VAII
Sbjct: 419 ADGSSRPYRCKIKAPGFAHLAALEKIGKQHMLADVVAII 457
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/66 (93%), Positives = 64/66 (96%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+VPLRAKY
Sbjct: 116 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 175
Query: 370 IRVMFT 375
IR +F
Sbjct: 176 IRTLFA 181
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + WK+ WN + PVEK +RN+ +NFGPQHPAAHGVL L E+
Sbjct: 57 VMYPDEVTSLWKVPPWNSKVTPVEKSVRNLTLNFGPQHPAAHGVLRLVLEL 107
>gi|157129189|ref|XP_001655316.1| NADH-ubiquinone oxidoreductase fe-s protein 2 (ndufs2) [Aedes
aegypti]
gi|108872313|gb|EAT36538.1| AAEL011381-PA [Aedes aegypti]
Length = 468
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/285 (70%), Positives = 238/285 (83%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNHIMA+GTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY
Sbjct: 172 AKYIRVLFGEITRILNHIMAIGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAY 231
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV+ D+P+GLLDDIY F S F+ RLDEVED+LT NR+W+QRT+D+GIV+AEDALNY
Sbjct: 232 IRPGGVSQDLPLGLLDDIYEFASKFAERLDEVEDVLTTNRIWVQRTQDIGIVTAEDALNY 291
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGIKWDLRK QPYD Y +FD+PIGT G+ + ++EMRQSLRI++Q
Sbjct: 292 GFSGVMLRGSGIKWDLRKSQPYDAYHLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQ 351
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G+++TDD K++ PSRSEMK GY VPPG+TYTA+EAPKGE
Sbjct: 352 CLNQMPAGDIKTDDAKLTPPSRSEMKTSMEALIHHFKLFTQGYQVPPGSTYTAIEAPKGE 411
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+S+PYRCKIKAPGFAHLAAL+K+GK LAD+VAII
Sbjct: 412 FGVYLVSDGSSRPYRCKIKAPGFAHLAALDKVGKHHMLADVVAII 456
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/65 (95%), Positives = 65/65 (100%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI++PLRAKY
Sbjct: 115 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKY 174
Query: 370 IRVMF 374
IRV+F
Sbjct: 175 IRVLF 179
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ +KWKI WN + PVEK +RN+ INFGPQHPAAHGVL L E+
Sbjct: 56 VMYPDEVTSKWKIPPWNSKIAPVEKTVRNVKINFGPQHPAAHGVLRLVLEL 106
>gi|158289654|ref|XP_311336.3| AGAP000794-PA [Anopheles gambiae str. PEST]
gi|347964516|ref|XP_003437099.1| AGAP000794-PB [Anopheles gambiae str. PEST]
gi|347964518|ref|XP_003437100.1| AGAP000794-PC [Anopheles gambiae str. PEST]
gi|157018621|gb|EAA06952.3| AGAP000794-PA [Anopheles gambiae str. PEST]
gi|333467568|gb|EGK96602.1| AGAP000794-PB [Anopheles gambiae str. PEST]
gi|333467569|gb|EGK96603.1| AGAP000794-PC [Anopheles gambiae str. PEST]
Length = 468
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/282 (71%), Positives = 236/282 (83%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNHIMAVGTHALDVGA+TPFFWLFEEREKMMEFYER SGARMHAAY+RP
Sbjct: 175 IRVLFAEITRILNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRP 234
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+ D+P+GLLDDIY F S F RLDEVED+LT NR+W+QRT D+G+VSAEDALNYGFS
Sbjct: 235 GGVSQDLPLGLLDDIYEFASKFGERLDEVEDVLTTNRIWVQRTVDIGVVSAEDALNYGFS 294
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRK QPYD Y+ EFD+PIGT G+ + ++EMRQSLRI++Q +N
Sbjct: 295 GVMLRGSGIKWDLRKSQPYDAYDLVEFDVPIGTKGDCYDRYLCRVEEMRQSLRIIDQCLN 354
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP GE++TDD K++ PSR EMK GY VPPGATYTAVEAPKGEFG+
Sbjct: 355 QMPAGEIKTDDAKLTPPSRGEMKHSMEALIHHFKLFTQGYQVPPGATYTAVEAPKGEFGL 414
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
Y+VSDG+S+PYRCKIKAPGFAHLAAL+KIG+ LAD+VAII
Sbjct: 415 YVVSDGSSRPYRCKIKAPGFAHLAALDKIGRHHMLADVVAII 456
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/66 (92%), Positives = 64/66 (96%), Gaps = 1/66 (1%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGT KLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI++PLRAKY
Sbjct: 116 DPHIGLLHRGT-KLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDIPLRAKY 174
Query: 370 IRVMFT 375
IRV+F
Sbjct: 175 IRVLFA 180
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ ++WK+ WN + PVEK +RN +NFGPQHPAAHGVL L E+
Sbjct: 58 VMYPDEVTSRWKLPPWNSKIAPVEKTVRNS-LNFGPQHPAAHGVLRLVLEL 107
>gi|389611867|dbj|BAM19491.1| NADH-ubiquinone oxidoreductase fe-s protein 2 [Papilio xuthus]
Length = 426
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/279 (72%), Positives = 230/279 (82%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF E+TRI NHIMAV THALD+GA+TP FWLFEEREK+ME YER SGARMHAAY+RPGGV
Sbjct: 136 LFCELTRIRNHIMAVATHALDIGALTPLFWLFEEREKLMELYERVSGARMHAAYIRPGGV 195
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
ALD+P+GL+DDIY F FS RLDEVED+LT NR+W+QRTKD+G+V+AEDALNYGFSGVM
Sbjct: 196 ALDMPLGLMDDIYEFAIKFSERLDEVEDVLTTNRIWVQRTKDIGVVTAEDALNYGFSGVM 255
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y +FD+PIGT G+ + ++EMRQSLRIV+Q +NKMP
Sbjct: 256 LRGSGIKWDLRKAQPYDAYHLVDFDVPIGTKGDCYDRYLCRVEEMRQSLRIVDQCLNKMP 315
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEV+TDD K++ PSR EMK GY VPPG+TYTA+EAPKGEFGVYLV
Sbjct: 316 PGEVKTDDAKLTPPSREEMKTSMEALIHHFKLFSQGYQVPPGSTYTAIEAPKGEFGVYLV 375
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG SKPYRCKIKAPGFAHLAALEK+GK S LADIVAII
Sbjct: 376 SDGGSKPYRCKIKAPGFAHLAALEKVGKNSMLADIVAII 414
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 66/73 (90%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQC+SLAVEKLLNI+
Sbjct: 66 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCFSLAVEKLLNID 125
Query: 363 VPLRAKYIRVMFT 375
+P+RAKYIR +F
Sbjct: 126 IPIRAKYIRTLFC 138
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ + K + +N + P EKQ+RNMV+NFGPQHPAAHGVL L E+
Sbjct: 14 VMYPDEVTSLMKHLPYNSIIAPTEKQVRNMVLNFGPQHPAAHGVLRLVLEL 64
>gi|268370122|ref|NP_001161242.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Nasonia vitripennis]
Length = 467
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 197/279 (70%), Positives = 235/279 (84%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L+ EITRILNHIM +GTHALDVGA+TPFFWLFEEREK+MEFYERASGARMH AYVRPGGV
Sbjct: 177 LYGEITRILNHIMGIGTHALDVGALTPFFWLFEEREKLMEFYERASGARMHTAYVRPGGV 236
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
ALD+P+GL+DDIY + S ++ R+DE+ED+LTENR+WIQRT+D+G++SAEDALNYGFSGVM
Sbjct: 237 ALDLPLGLMDDIYEWASKYAERIDEIEDVLTENRIWIQRTRDIGVISAEDALNYGFSGVM 296
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
+RGSGIKWD+RK +PYD Y +FD+PIG +G+ +I ++EMRQSLRI+EQ +N+MP
Sbjct: 297 VRGSGIKWDIRKSEPYDAYNLVDFDVPIGKNGDCYDRYLIRIEEMRQSLRIIEQCLNQMP 356
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEVRTDD KI+ P+R EMK GY VPPGATYT +EAPKGEFGVYLV
Sbjct: 357 AGEVRTDDAKIAPPNRKEMKTSMEALIHHFKLFTQGYQVPPGATYTCIEAPKGEFGVYLV 416
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+SKPYRCKIKAPGFAHLAAL+K+G G LAD+VAII
Sbjct: 417 SDGSSKPYRCKIKAPGFAHLAALQKMGPGHMLADVVAII 455
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 64/69 (92%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQCYSLA+EKLLNIEVPL
Sbjct: 110 VVSADPHIGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMCNEQCYSLAIEKLLNIEVPL 169
Query: 366 RAKYIRVMF 374
RAKYIR ++
Sbjct: 170 RAKYIRTLY 178
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+ P + + KWK + P K I+N+ +NFGPQHPAAHGVL L E+
Sbjct: 55 VIGPAEGKPKWKFPPYEQEEPPPPKTIKNIKVNFGPQHPAAHGVLRLVLEL 105
>gi|321463599|gb|EFX74614.1| hypothetical protein DAPPUDRAFT_307186 [Daphnia pulex]
Length = 469
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/282 (71%), Positives = 231/282 (81%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAE+TRILNH+M +GTHALD+GA+TPFFWLFEEREKMMEFYER SGARMHAAYVRP
Sbjct: 176 IRVLFAELTRILNHLMQIGTHALDIGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRP 235
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGVALD+P+GL+DDIY F S F R+DE+ED+LT NR+W QRT D+GIVSAEDALNYGFS
Sbjct: 236 GGVALDLPLGLMDDIYEFCSKFGERIDEMEDVLTANRIWKQRTVDIGIVSAEDALNYGFS 295
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRK QPYD Y+ EFD+P+G G+ + ++EMR+SLRI++Q +N
Sbjct: 296 GVMLRGSGIKWDLRKTQPYDAYDLVEFDVPVGLKGDCYDRYLCRVEEMRESLRIIDQCLN 355
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
KMP GEVR DD KI P RSEMK GY VPPGATYTAVE PKGEFGV
Sbjct: 356 KMPAGEVRVDDAKIMAPKRSEMKTSMEALIHHFKLFTQGYNVPPGATYTAVENPKGEFGV 415
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDG+S+PYRCKIKAPGFAHLAALEK+G+ LADIVAII
Sbjct: 416 YLVSDGSSRPYRCKIKAPGFAHLAALEKVGRNHMLADIVAII 457
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 66/73 (90%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NEQCYSLAVEKLLNI+
Sbjct: 109 GETVVRADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMGNEQCYSLAVEKLLNID 168
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIRV+F
Sbjct: 169 VPLRAKYIRVLFA 181
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
L P + WK+ N PVEK + N+ +NFGPQHPAAHGVL L E+
Sbjct: 57 CLIPQTKANVWKMPPLNHYEAPVEKSVTNINLNFGPQHPAAHGVLRLVLEL 107
>gi|289742785|gb|ADD20140.1| NADH-ubiquinone oxidoreductase NDUFS2/49 kDa subunit [Glossina
morsitans morsitans]
Length = 461
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/279 (70%), Positives = 233/279 (83%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAE+TR+LNHIMA+GTHALDVGA+TPFFWLFEEREKMMEFYERASGARMHAAY+RPGGV
Sbjct: 171 LFAELTRLLNHIMAIGTHALDVGALTPFFWLFEEREKMMEFYERASGARMHAAYIRPGGV 230
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+PIGL+DDIY F S F RLDEVED+LT NR+W+QRT D+G V+AE+ALNYGFSGVM
Sbjct: 231 SLDMPIGLMDDIYEFASKFGERLDEVEDVLTTNRIWVQRTVDIGTVTAEEALNYGFSGVM 290
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y+ EFDIPIGT G+ + ++EMRQSLRI++Q +N+MP
Sbjct: 291 LRGSGIKWDLRKQQPYDAYDLVEFDIPIGTKGDCYDRYLCRLEEMRQSLRIIDQCLNQMP 350
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++TDD KI+ PSR+EMK G+ VPPG TYTA+EAPKGEFGVYLV
Sbjct: 351 EGEIKTDDAKIAPPSRAEMKVSMEALIHHFKLFSQGFQVPPGTTYTAIEAPKGEFGVYLV 410
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+DG+S+PYRCKIKAPGFAHLAAL +G+ LAD+VAII
Sbjct: 411 ADGSSRPYRCKIKAPGFAHLAALNHVGRQHMLADVVAII 449
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 66/73 (90%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS+AVEKLLNIE
Sbjct: 101 GETVTRCDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSMAVEKLLNIE 160
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIR +F
Sbjct: 161 VPLRAKYIRTLFA 173
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRIL 59
V+YPD ++W + WN ++PVEK+IRN+ INFGPQHPAAHGVL L E +TR
Sbjct: 49 VMYPDAVTSQWTLPPWNHQMLPVEKKIRNLTINFGPQHPAAHGVLRLVMELDGETVTRCD 108
Query: 60 NHI 62
HI
Sbjct: 109 PHI 111
>gi|82658272|ref|NP_001032494.1| uncharacterized protein LOC641476 [Danio rerio]
Length = 462
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/279 (72%), Positives = 228/279 (81%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M VGTHALD+GA+TPFFWLFEEREKMMEFYER SGARMHAAYVRPGGV
Sbjct: 172 MFAEITRILNHLMQVGTHALDIGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRPGGV 231
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
LD+P+GL+DDIY FI F RLDEVED+LTENR+W QRT D+G+VSAEDALN+GFSGVM
Sbjct: 232 YLDLPLGLMDDIYTFIKQFGQRLDEVEDVLTENRIWKQRTVDIGVVSAEDALNWGFSGVM 291
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK QPYD Y+ +FDIPIGT G+ + M+EMRQSLRI+EQ +NKMP
Sbjct: 292 LRGSGIKWDLRKSQPYDAYDVVDFDIPIGTKGDCYDRYLCRMEEMRQSLRIIEQCLNKMP 351
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE+R DD K+ P R EMK G+ VPPG TYTA+EAPKGEFGVYLV
Sbjct: 352 AGEIRADDSKVVPPKRGEMKSSMESLIHHFKLYTEGFNVPPGQTYTAIEAPKGEFGVYLV 411
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAAL+ IG+ LADIVAII
Sbjct: 412 SDGSSRPYRCKIKAPGFAHLAALDYIGRNHMLADIVAII 450
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/66 (93%), Positives = 63/66 (95%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQCYSLAVEKLLN+EVPLRAKY
Sbjct: 109 DPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMCNEQCYSLAVEKLLNLEVPLRAKY 168
Query: 370 IRVMFT 375
IR MF
Sbjct: 169 IRTMFA 174
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 9 DKEETKWKI-INWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ E TKW + I PVEK++ N+ +NFGPQHPAAHGVL L E+
Sbjct: 53 EAEGTKWTLPIESVRYEPPVEKKVANLQLNFGPQHPAAHGVLRLVLEL 100
>gi|322799190|gb|EFZ20620.1| hypothetical protein SINV_09347 [Solenopsis invicta]
Length = 470
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/282 (71%), Positives = 230/282 (81%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNHIM VGTHALD+GA+TPFFWLFEEREKMMEFYER SGARMHAAYVRP
Sbjct: 177 IRVLFAEITRILNHIMGVGTHALDIGALTPFFWLFEEREKMMEFYERVSGARMHAAYVRP 236
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY + S +S RLDEVED+LTENR+W QRT D+G VSAEDALN+GFS
Sbjct: 237 GGVSLDMPLGLMDDIYDWASKYSERLDEVEDLLTENRIWKQRTIDIGCVSAEDALNWGFS 296
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRKV PYD Y +FDIP+GT+G+ + ++EMRQSLRI+ Q +N
Sbjct: 297 GVMLRGSGIKWDLRKVAPYDAYHLVDFDIPVGTNGDCYDRYLCRVEEMRQSLRIIHQCLN 356
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP GEVR DD KI P R EMK G+ VPPGATYTA+EAPKGEFGV
Sbjct: 357 QMPAGEVRCDDAKIVPPRREEMKSSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGV 416
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDG+SKPYRCKIKAPGFAHLA L++ G FLADIVAII
Sbjct: 417 YLVSDGSSKPYRCKIKAPGFAHLAGLQRFGPKHFLADIVAII 458
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 67/73 (91%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQC+SLA+EKLLNI+
Sbjct: 110 GEIVLSADPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMCNEQCFSLAIEKLLNID 169
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIRV+F
Sbjct: 170 VPLRAKYIRVLFA 182
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+ I+N+ +NFGPQHPAAHGVL L E+
Sbjct: 80 AEQTIQNVKLNFGPQHPAAHGVLRLILEL 108
>gi|58865384|ref|NP_001011907.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Rattus norvegicus]
gi|392352848|ref|XP_003751325.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Rattus norvegicus]
gi|81890431|sp|Q641Y2.1|NDUS2_RAT RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|51980672|gb|AAH82067.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Rattus norvegicus]
Length = 463
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/295 (67%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+VSAEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 VVSAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND V EK + N+ +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPSKETAHWKPPPWNDVDVLKEKVVTNVTLNFGPQHPAAHGVLRLVLELS 102
>gi|148707168|gb|EDL39115.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, isoform CRA_a [Mus
musculus]
Length = 436
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/295 (67%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 131 LLNIQPP-PRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 189
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GLLDDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 190 VSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 249
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 250 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 309
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 310 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 369
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 370 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 424
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YS+AVEKLLNI+
Sbjct: 76 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQ 135
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 136 PPPRAQWIRVLF 147
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND + EK + NM +NFGPQHPAAHGVL L E++
Sbjct: 24 VMYPSKETAHWKPPPWNDVDILKEKAVTNMTLNFGPQHPAAHGVLRLVLELS 75
>gi|74142353|dbj|BAE31936.1| unnamed protein product [Mus musculus]
gi|74198865|dbj|BAE30656.1| unnamed protein product [Mus musculus]
Length = 462
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/295 (67%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 157 LLNIQPP-PRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 215
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GLLDDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 216 VSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 275
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 276 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 335
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 336 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 395
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 396 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 450
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YS+AVEKLLNI+
Sbjct: 102 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQ 161
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 162 PPPRAQWIRVLF 173
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND + EK + NM +NFGPQHPAAHGVL L E++
Sbjct: 49 AVMYPSKETAHWKPPPWNDVDILKEKAVTNMTLNFGPQHPAAHGVLRLVLELS 101
>gi|23346461|ref|NP_694704.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Mus musculus]
gi|47117273|sp|Q91WD5.1|NDUS2_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|16359270|gb|AAH16097.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Mus musculus]
gi|26347289|dbj|BAC37293.1| unnamed protein product [Mus musculus]
gi|74219567|dbj|BAE29554.1| unnamed protein product [Mus musculus]
gi|74224918|dbj|BAE38181.1| unnamed protein product [Mus musculus]
gi|148707169|gb|EDL39116.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, isoform CRA_b [Mus
musculus]
Length = 463
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/295 (67%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GLLDDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YS+AVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND + EK + NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDILKEKAVTNMTLNFGPQHPAAHGVLRLVLELS 102
>gi|13278096|gb|AAH03898.1| Ndufs2 protein, partial [Mus musculus]
Length = 470
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/295 (67%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 165 LLNIQPP-PRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 223
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GLLDDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 224 VSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 283
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 284 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 343
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 344 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 403
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 404 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 458
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YS+AVEKLLNI+
Sbjct: 110 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQ 169
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 170 PPPRAQWIRVLF 181
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND + EK + NM +NFGPQHPAAHGVL L E++
Sbjct: 57 AVMYPSKETAHWKPPPWNDVDILKEKAVTNMTLNFGPQHPAAHGVLRLVLELS 109
>gi|391330562|ref|XP_003739727.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Metaseiulus occidentalis]
Length = 456
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/282 (69%), Positives = 231/282 (81%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNHIM V TH LD+G MTPFFWLFEEREK+MEFYERASGARMHAAYVRP
Sbjct: 163 IRVLFAEITRILNHIMGVTTHCLDIGGMTPFFWLFEEREKLMEFYERASGARMHAAYVRP 222
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+ DIPIGL+DDI+ + + + RLDE+ED+LTENR+W QRT D+G++SAEDALN+G S
Sbjct: 223 GGVSQDIPIGLMDDIHDWATKYGERLDEMEDLLTENRIWKQRTVDIGVISAEDALNWGCS 282
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGIKWDLRK QPYD YE+F+FD+PIG G+ + ++EMRQSLRI+EQ +N
Sbjct: 283 GVILRGSGIKWDLRKTQPYDNYEDFDFDVPIGKKGDCYDRYLCRVEEMRQSLRIIEQCLN 342
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
KMP GEVRTDD K+ PSR EMK GY VPPGATYTAVEAPKGEFG+
Sbjct: 343 KMPSGEVRTDDNKVCPPSREEMKTSMEALIHHFKLFSEGYQVPPGATYTAVEAPKGEFGL 402
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
Y+VSDG+SKPYRCKIKAPGFAHL+AL+ IG+ LADIVAII
Sbjct: 403 YMVSDGSSKPYRCKIKAPGFAHLSALDFIGRNHMLADIVAII 444
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/72 (86%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKLIEYKTYTQALPY DRLDYVSMMCNEQCYSLAVEKLLNIE
Sbjct: 96 GETVVRCDPHIGLLHRGTEKLIEYKTYTQALPYMDRLDYVSMMCNEQCYSLAVEKLLNIE 155
Query: 363 VPLRAKYIRVMF 374
VP R KYIRV+F
Sbjct: 156 VPKRGKYIRVLF 167
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VE+ N INFGPQHPAAHGVL L ++
Sbjct: 66 VERTASNTFINFGPQHPAAHGVLRLILQL 94
>gi|74226763|dbj|BAE27028.1| unnamed protein product [Mus musculus]
Length = 463
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/295 (67%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIM+V THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRILNHIMSVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GLLDDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YS+AVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND + EK + NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDILKEKAVTNMALNFGPQHPAAHGVLRLVLELS 102
>gi|260790071|ref|XP_002590067.1| hypothetical protein BRAFLDRAFT_114745 [Branchiostoma floridae]
gi|229275255|gb|EEN46078.1| hypothetical protein BRAFLDRAFT_114745 [Branchiostoma floridae]
Length = 469
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/282 (68%), Positives = 230/282 (81%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++F EITRILNHIM VGTHALDVGAMTPFFW+FEEREKMMEFYER SGARMHAAYVRP
Sbjct: 176 IRVMFGEITRILNHIMGVGTHALDVGAMTPFFWMFEEREKMMEFYERVSGARMHAAYVRP 235
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P+GL+DDIY FI+ F+ R+DEVE+MLT NR+W RT D+G++SAEDA+NYGFS
Sbjct: 236 GGVQQDLPLGLMDDIYDFITKFAQRVDEVEEMLTNNRIWRNRTIDIGVISAEDAINYGFS 295
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRKVQPYD Y+ EFD+PIG G+ +I ++EMRQSL I+ Q +N
Sbjct: 296 GVMLRGSGIKWDLRKVQPYDAYDQVEFDVPIGRKGDCYDRYLIRVEEMRQSLHIIHQCLN 355
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
KMP GE++ DD KI+ P R+EMK GY VPPG+TYTA+EAPKGEFGV
Sbjct: 356 KMPEGEIKVDDAKITPPRRAEMKESMEALIHHFKLYTEGYMVPPGSTYTAIEAPKGEFGV 415
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDG+S+PYRCKIKAPGFAHLA L+K+ +G LAD+VAII
Sbjct: 416 YLVSDGSSRPYRCKIKAPGFAHLAGLDKVSQGHMLADVVAII 457
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 63/69 (91%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQCYSLAVEKLL IE+P
Sbjct: 112 VKRCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQCYSLAVEKLLGIEIPE 171
Query: 366 RAKYIRVMF 374
RAK+IRVMF
Sbjct: 172 RAKFIRVMF 180
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 5 VLYPD-KEETKW--KIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
VLY D KE +W I W+ + ++ N+ +NFGPQHPAAHGVL L E++
Sbjct: 54 VLYTDPKEPNRWAKDIKPWSSRDPTPDIEVSNLTVNFGPQHPAAHGVLRLVMELS 108
>gi|291397570|ref|XP_002715203.1| PREDICTED: NADH dehydrogenase (ubiquinone) Fe-S protein 2
[Oryctolagus cuniculus]
Length = 463
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+++AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 VITAEDALNYGFSGVMLRGSGIQWDLRKTQPYDAYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V++P KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMFPTKETAHWKPPPWNDVDPPKDTMVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|307209286|gb|EFN86377.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Harpegnathos saltator]
Length = 469
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/282 (69%), Positives = 231/282 (81%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNHIM +GTHALD+GAMTPFFWLFEEREK+MEFYER SGARMHAAYVRP
Sbjct: 176 IRVLFAEITRILNHIMGIGTHALDIGAMTPFFWLFEEREKLMEFYERVSGARMHAAYVRP 235
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY + + ++ RLDEVEDMLTENR+W QRT ++G+VSAEDALN+GFS
Sbjct: 236 GGVSLDMPLGLMDDIYDWATKYTERLDEVEDMLTENRIWKQRTTNIGVVSAEDALNFGFS 295
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSGIKWDLRK PYD Y+ +FD+P+G +G+ + M+EMRQSLRI+ Q +N
Sbjct: 296 GVMVRGSGIKWDLRKTAPYDAYDLVDFDVPVGINGDCYDRYLCRMEEMRQSLRIIHQCLN 355
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP GEVR DD KI P R EMK G+ VPPGATYTA+EAPKGEFGV
Sbjct: 356 QMPAGEVRCDDAKIVPPRREEMKTSMEALIHHFKLYSQGFQVPPGATYTAIEAPKGEFGV 415
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDG+SKPYRCKIKAPGFAHLAAL+ +G FLAD+VAII
Sbjct: 416 YLVSDGSSKPYRCKIKAPGFAHLAALQYMGTKHFLADVVAII 457
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 66/73 (90%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQC+SLA+EKLLNI+
Sbjct: 109 GEIVLNADPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMCNEQCFSLAIEKLLNID 168
Query: 363 VPLRAKYIRVMFT 375
VPLR KYIRV+F
Sbjct: 169 VPLRGKYIRVLFA 181
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+ I+N+ INFGPQHPAAHGVL L E+
Sbjct: 80 EQTIQNIKINFGPQHPAAHGVLRLILEL 107
>gi|281352149|gb|EFB27733.1| hypothetical protein PANDA_018833 [Ailuropoda melanoleuca]
Length = 432
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/295 (66%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 127 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 185
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GLLDDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 186 VSGARMHAAYVRPGGVHQDLPLGLLDDIYEFSKNFSLRVDELEEMLTNNRIWRNRTVDIG 245
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 246 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 305
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 306 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 365
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 366 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 420
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 72 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 131
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 132 PPPRAQWIRVLF 143
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 19 AVMYPTKETAHWKPPPWNDVDPPKDTMVTNLTLNFGPQHPAAHGVLRLVMELS 71
>gi|301786741|ref|XP_002928779.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 463
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/295 (66%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GLLDDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYVRPGGVHQDLPLGLLDDIYEFSKNFSLRVDELEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPTKETAHWKPPPWNDVDPPKDTMVTNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|354489525|ref|XP_003506912.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Cricetulus griseus]
gi|344252460|gb|EGW08564.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Cricetulus griseus]
Length = 463
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LFAEITRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFAEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GLLDDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLLDDIYEFTKNFSLRIDEVEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+++AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VITAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQ+LRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQALRIILQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 64/73 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMFT 375
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLFA 175
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++YP KE WK +ND + +K + N+ +NFGPQHPAAHGVL L E++
Sbjct: 51 IMYPSKETAHWKPPPFNDVDIVKDKVVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|417401373|gb|JAA47575.1| Putative nadh:ubiquinone oxidoreductase ndufs2/49 kda subunit
[Desmodus rotundus]
Length = 463
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/285 (67%), Positives = 230/285 (80%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER SGARMHAAY
Sbjct: 167 AQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAY 226
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G+V+AEDALNY
Sbjct: 227 IRPGGVHQDLPLGLMDDIYQFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNY 286
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI+WDLRK QPYD Y+ +FD+PIG+HG+ + ++EMRQSLRI+EQ
Sbjct: 287 GFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSHGDCYDRYLCRVEEMRQSLRIIEQ 346
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP GE++ DD K+S P R+EMK GY VPPGATYTA+EAPKGE
Sbjct: 347 CLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGE 406
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 407 FGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 65/72 (90%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRRCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
PLRA++IRV+F
Sbjct: 163 PPLRAQWIRVLF 174
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPTKETAHWKPPPWNDVDPPKDTMVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|45361573|ref|NP_989363.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Xenopus (Silurana)
tropicalis]
gi|39850016|gb|AAH64276.1| hypothetical protein MGC76312 [Xenopus (Silurana) tropicalis]
gi|89273935|emb|CAJ81740.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Xenopus (Silurana)
tropicalis]
Length = 459
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/295 (67%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIMAV HALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 154 LLNIQPP-PRAQWIRVLFGEITRILNHIMAVTCHALDIGAMTPFFWMFEEREKMFEFYER 212
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY FI FS R+DEVE+MLT NR+W RT D+G
Sbjct: 213 VSGARMHAAYVRPGGVHQDMPLGLMDDIYEFIKNFSIRVDEVEEMLTNNRIWKNRTVDIG 272
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+VSAEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 273 VVSAEDALNYGFSGVMLRGSGIQWDLRKSQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 332
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQS+RI+ Q +NKMP GE++ DD K+S P RSEMK GY VPPGAT
Sbjct: 333 MRQSMRIILQCLNKMPEGEIKVDDAKVSPPKRSEMKRSMESLIHHFKLYTEGYQVPPGAT 392
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ +G LAD+VAII
Sbjct: 393 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSQGHMLADVVAII 447
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 62/69 (89%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+ P
Sbjct: 102 VKRCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPP 161
Query: 366 RAKYIRVMF 374
RA++IRV+F
Sbjct: 162 RAQWIRVLF 170
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 34/52 (65%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KW WND PVEK + N+ INFGPQHPAAHGVL L E++
Sbjct: 47 VMYPSPITEKWVPAPWNDKDPPVEKTVSNLTINFGPQHPAAHGVLRLVMELS 98
>gi|348525767|ref|XP_003450393.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Oreochromis niloticus]
Length = 466
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/287 (67%), Positives = 231/287 (80%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +L+ E+TRILNHIMA+ THALD+GAMTPFFW+FEEREKM EFYER SGARMHA
Sbjct: 168 PRAQWIRVLYGEMTRILNHIMAITTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHA 227
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV D+P+GL+DDIY + FS R+DEVE+MLT NR+W RT D+G+VSAE+AL
Sbjct: 228 AYVRPGGVHQDMPLGLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVDIGVVSAEEAL 287
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYGFSGVMLRGSGIKWDLRK QPYD Y+ EFD+PIG++G+ + ++EMRQSLRI+
Sbjct: 288 NYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDVPIGSNGDCYDRYLCRVEEMRQSLRIM 347
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
QA+NKMP GE++ DD K++ P RSEMK GY VPPGATYTAVEAPK
Sbjct: 348 HQALNKMPEGEIKVDDAKVAPPKRSEMKMSMESLIHHFKLYTEGYQVPPGATYTAVEAPK 407
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 408 GEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMAKGHMLADVVAII 454
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 62/69 (89%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+ P
Sbjct: 109 VKKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPP 168
Query: 366 RAKYIRVMF 374
RA++IRV++
Sbjct: 169 RAQWIRVLY 177
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 33/53 (62%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KW WND P EK + N+ INFGPQHPAAHGVL L E++
Sbjct: 53 AVMYPTAVNEKWTPPPWNDKDPPAEKDVSNLTINFGPQHPAAHGVLRLVMELS 105
>gi|395825183|ref|XP_003785820.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Otolemur garnettii]
Length = 463
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY F FS RLDE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P +K + N+ +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPSKETAHWKPPPWNDVDPPKDKMVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|74006138|ref|XP_536138.2| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 [Canis lupus familiaris]
Length = 463
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRVDELEEMLTNNRIWKNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+PIG+ G+ + ++E
Sbjct: 277 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPTKETAHWKPPPWNDVDPPKDTMVTNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|444522045|gb|ELV13286.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Tupaia chinensis]
Length = 510
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 205 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 263
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GLLDDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 264 VSGARMHAAYVRPGGVHQDLPLGLLDDIYEFSKNFSIRIDELEEMLTNNRIWRNRTIDIG 323
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 324 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 383
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 384 MRQSLRIIFQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 443
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 444 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 498
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 150 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 209
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 210 PPPRAQWIRVLF 221
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 97 AVMYPTKETAHWKPPPWNDVDSPKDTVVSNLTLNFGPQHPAAHGVLRLVMELS 149
>gi|351710722|gb|EHB13641.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Heterocephalus glaber]
Length = 463
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 232/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALDVGAMTPFFW+FEEREK+ EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDVGAMTPFFWMFEEREKLFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEVEEMLTNNRIWQNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVKAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P RSEMK GY VPPGAT
Sbjct: 337 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRSEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+ + KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDMMSKGHMLADVVAII 451
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVQKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P E+ + N+ +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPTKETAHWKPPPWNDVDPPKEQTVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|311253960|ref|XP_001927701.2| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Sus scrofa]
Length = 473
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 168 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 226
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GLLDDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 227 VSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIG 286
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 287 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 346
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 347 MRQSLRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 406
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 407 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 461
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 113 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 172
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 173 PPPRAQWIRVLF 184
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 60 AVMYPTKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELS 112
>gi|440893883|gb|ELR46499.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial, partial [Bos grunniens mutus]
Length = 471
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 166 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 224
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 225 VSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIG 284
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
IV+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 285 IVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 344
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQS+RI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 345 MRQSIRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 404
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 405 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 459
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 111 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 170
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 171 PPPRAQWIRVLF 182
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 58 AVMYPTKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELS 110
>gi|431916116|gb|ELK16370.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Pteropus alecto]
Length = 463
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/287 (67%), Positives = 230/287 (80%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER SGARMHA
Sbjct: 165 PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHA 224
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G+V+AEDAL
Sbjct: 225 AYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDAL 284
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+PIG+HG+ + ++EMRQSLRI+
Sbjct: 285 NYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSHGDCYDRYLCRVEEMRQSLRII 344
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +NKMP GE++ DD K+S P R+EMK GY VPPGATYTA+EAPK
Sbjct: 345 LQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPK 404
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 405 GEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 APPRAQWIRVLF 174
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPTKETAHWKPPPWNDVDRPKDTMVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|348561674|ref|XP_003466637.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Cavia porcellus]
Length = 463
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 232/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GLLDDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLLDDIYQFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 VVKAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+ + +G LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDMMSQGHMLADVVAII 451
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 34/52 (65%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P E + N+ +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPTKETAHWKPPPWNDVDPPKENIVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|209154116|gb|ACI33290.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Salmo salar]
Length = 466
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/287 (67%), Positives = 230/287 (80%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LF E+TRILNHIMA+ THALD+GAMTPFFW+FE+REKM EFYER SGARMHA
Sbjct: 168 PRAQWIRVLFGELTRILNHIMAITTHALDIGAMTPFFWMFEQREKMFEFYERVSGARMHA 227
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV D+P+GL+DDIY + FS R+DEVE+MLT NR+W RT D+G+VSAEDAL
Sbjct: 228 AYVRPGGVHQDMPLGLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVDIGVVSAEDAL 287
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYGFSGVMLRGSGIKWDLRK QPYD Y+ EFD+PIG+ G+ + ++EMRQSLRI+
Sbjct: 288 NYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDVPIGSKGDCYDRYLCRVEEMRQSLRIM 347
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+A+NKMP GE++ DD K++ P RSEMK GY VPPG+TYTAVEAPK
Sbjct: 348 IEALNKMPAGEIKVDDAKVAPPKRSEMKMSMESLIHHFKLYTEGYQVPPGSTYTAVEAPK 407
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKIKAPGFAHLAAL+ + KG LAD+VAII
Sbjct: 408 GEFGVYLVSDGSSRPYRCKIKAPGFAHLAALDMMAKGHMLADVVAII 454
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 62/69 (89%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+ P
Sbjct: 109 VKKCDPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPP 168
Query: 366 RAKYIRVMF 374
RA++IRV+F
Sbjct: 169 RAQWIRVLF 177
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KW WND P+EK++ N+ INFGPQHPAAHGVL L E++
Sbjct: 54 VMYPSAITEKWVPPPWNDKDAPMEKEVSNLTINFGPQHPAAHGVLRLVLELS 105
>gi|115495721|ref|NP_001068605.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Bos taurus]
gi|116242673|sp|P17694.2|NDUS2_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|112362375|gb|AAI19925.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Bos taurus]
gi|296489840|tpg|DAA31953.1| TPA: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Bos taurus]
Length = 463
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
IV+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 IVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQS+RI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSIRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPTKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|47209375|emb|CAF91411.1| unnamed protein product [Tetraodon nigroviridis]
Length = 462
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/287 (67%), Positives = 231/287 (80%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +L+ E+TRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER SGARMHA
Sbjct: 164 PRAQWIRVLYGELTRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHA 223
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV D+P+GL+DDIY + FS R+DEVE+MLT NR+W RT D+G+V++E+AL
Sbjct: 224 AYVRPGGVHQDLPLGLMDDIYEWCQNFSIRIDEVEEMLTNNRIWKNRTVDIGVVTSEEAL 283
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYGFSGVMLRGSGIKWDLRK QPYD Y+ EFDIPIG++G+ + ++EMRQSLRI+
Sbjct: 284 NYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDIPIGSNGDCYDRYLCRVEEMRQSLRIM 343
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
QA+NKMP GE++ DD K++ P RSEMK GY VPPGATYTAVEAPK
Sbjct: 344 HQALNKMPEGEIKIDDAKVAPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAVEAPK 403
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ +G LAD+VAII
Sbjct: 404 GEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSQGHMLADVVAII 450
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/69 (81%), Positives = 62/69 (89%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLN++ P
Sbjct: 105 VKKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNVQAPP 164
Query: 366 RAKYIRVMF 374
RA++IRV++
Sbjct: 165 RAQWIRVLY 173
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KW WND P EK++ N+ INFGPQHPAAHGVL L E++
Sbjct: 49 AVMYPTAFNEKWAPPPWNDKDPPAEKEVSNLTINFGPQHPAAHGVLRLVMELS 101
>gi|833783|emb|CAA32523.1| NADH:ubiquinone oxidoreductase (428 AA) [Bos taurus]
Length = 428
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 123 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 181
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 182 VSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIG 241
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
IV+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 242 IVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 301
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQS+RI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 302 MRQSIRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 361
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 362 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 416
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 68 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 127
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 128 PPPRAQWIRVLF 139
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 15 AVMYPTKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELS 67
>gi|432101257|gb|ELK29495.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial, partial [Myotis davidii]
Length = 436
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 131 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 189
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 190 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 249
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+PIG+ G+ + ++E
Sbjct: 250 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEE 309
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 310 MRQSLRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 369
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 370 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 424
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 76 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 135
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 136 PPPRAQWIRVLF 147
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WN P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 23 AVMYPTKETAHWKPPPWNAVDPPKDTMVSNLTLNFGPQHPAAHGVLRLVMELS 75
>gi|339241679|ref|XP_003376765.1| NADH dehydrogenase I, D subunit [Trichinella spiralis]
gi|316974504|gb|EFV57990.1| NADH dehydrogenase I, D subunit [Trichinella spiralis]
Length = 1482
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/287 (66%), Positives = 230/287 (80%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LFAE+TRILNHI+ + THALDVGAMTP FWLFEEREK+MEFYER+SGARMHA
Sbjct: 180 PRAKWIRVLFAELTRILNHILGITTHALDVGAMTPLFWLFEEREKLMEFYERSSGARMHA 239
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
Y+RPGGVA+DIP+GLLDDI+ + S FSARLDEVED+LTE+RLW QRT D+G+V+AE+AL
Sbjct: 240 NYIRPGGVAVDIPLGLLDDIHAWASGFSARLDEVEDVLTESRLWKQRTIDIGVVTAENAL 299
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
N+GFSGVMLRGSGIKWD+RK +PY+ Y+ EFD+PIGT G+ ++ M+EMRQSLRI+
Sbjct: 300 NWGFSGVMLRGSGIKWDIRKTEPYEVYDQIEFDVPIGTKGDCYDRYLVRMEEMRQSLRII 359
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+Q +N+MP GEV+ DD K+ P RSEMK GY VPPG TY EAPK
Sbjct: 360 DQCLNRMPAGEVKVDDHKLVPPKRSEMKRDMESLIHHFKFFTEGYSVPPGCTYVPTEAPK 419
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+SKPYRC I+APGFAHL+ +E I K F+AD+VAII
Sbjct: 420 GEFGVYLVSDGSSKPYRCYIRAPGFAHLSMVEPISKYHFIADLVAII 466
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
A+I+ PHIGLLHR TEKLIEYKTYTQALPYFDRLDYVSMMCNE +SLAVEKLL +E
Sbjct: 118 AEIILRAVPHIGLLHRATEKLIEYKTYTQALPYFDRLDYVSMMCNEHAFSLAVEKLLAVE 177
Query: 363 VPLRAKYIRVMF 374
VP RAK+IRV+F
Sbjct: 178 VPPRAKWIRVLF 189
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 28/35 (80%), Gaps = 2/35 (5%)
Query: 23 NLVP--VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
NL P VE+++ NM++NFGPQHPAAHGVL L E+
Sbjct: 82 NLTPDLVERKVENMILNFGPQHPAAHGVLRLMLEL 116
>gi|332025397|gb|EGI65564.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Acromyrmex echinatior]
Length = 470
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/282 (69%), Positives = 230/282 (81%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNHIM +GTHALD+GA+TPFFWLFEEREKMMEFYER SGARMHAAY+RP
Sbjct: 177 IRVLFAEITRILNHIMGIGTHALDIGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRP 236
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDI+ + S +SARLDEVED+LT+NR+W QRT ++G V+AEDALN+GFS
Sbjct: 237 GGVSLDLPLGLMDDIHDWASKYSARLDEVEDLLTDNRIWRQRTVNIGTVTAEDALNWGFS 296
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRKV PYD Y +FD+PIGT+G+ + + EMRQSLRI+ Q +N
Sbjct: 297 GVMLRGSGIKWDLRKVAPYDVYHLMDFDVPIGTNGDCYDRYLCRVAEMRQSLRIIHQCLN 356
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP GEVR DD KI P R EMK G+ VPPGATYTA+EAPKGEFGV
Sbjct: 357 EMPEGEVRCDDAKIVPPRREEMKNSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGV 416
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDG+SKPYRCKIKAPGFAHLA L+ IG FLADIVAI+
Sbjct: 417 YLVSDGSSKPYRCKIKAPGFAHLACLQHIGPKHFLADIVAIV 458
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 66/73 (90%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQC+SLA+EKLLNI+
Sbjct: 110 GEIVLNADPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMCNEQCFSLAIEKLLNID 169
Query: 363 VPLRAKYIRVMFT 375
VPLR KYIRV+F
Sbjct: 170 VPLRGKYIRVLFA 182
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VE+ I+N+ +NFGPQHPAAHGVL L E+
Sbjct: 80 VEQTIQNIKLNFGPQHPAAHGVLRLILEL 108
>gi|426216997|ref|XP_004002740.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial [Ovis aries]
Length = 463
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQS+RI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSIRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPTKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|410906711|ref|XP_003966835.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Takifugu rubripes]
Length = 466
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/287 (67%), Positives = 230/287 (80%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LF E+TRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER SGARMHA
Sbjct: 168 PRAQWIRVLFGELTRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHA 227
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV D+P+GL+DDIY + FS R+DEVE+MLT NR+W RT D+G+V++E+AL
Sbjct: 228 AYVRPGGVHQDMPLGLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTLDIGVVTSEEAL 287
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYGFSGVMLRGSGIKWDLRK QPYD Y EFDIPIG++G+ + ++EMRQSLRI+
Sbjct: 288 NYGFSGVMLRGSGIKWDLRKSQPYDKYGEVEFDIPIGSNGDCYDRYLCRVEEMRQSLRIM 347
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
QA+NKMP GE++ DD K++ P RSEMK GY VPPGATYTAVEAPK
Sbjct: 348 HQALNKMPEGEIKVDDAKVAPPKRSEMKMSMESLIHHFKLYTEGYQVPPGATYTAVEAPK 407
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ +G LAD+VAII
Sbjct: 408 GEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSQGHMLADVVAII 454
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 62/69 (89%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLN++ P
Sbjct: 109 VKKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNVQAPP 168
Query: 366 RAKYIRVMF 374
RA++IRV+F
Sbjct: 169 RAQWIRVLF 177
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KWK WND P +K + N+ +NFGPQHPAAHGVL L E++
Sbjct: 53 AVMYPTAFNDKWKPPPWNDKDPPADKDVSNLTLNFGPQHPAAHGVLRLVMELS 105
>gi|156379389|ref|XP_001631440.1| predicted protein [Nematostella vectensis]
gi|156218480|gb|EDO39377.1| predicted protein [Nematostella vectensis]
Length = 412
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/285 (68%), Positives = 227/285 (79%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNHIM V THALDVGAMTPFFW+FEEREK+MEFYER SGARMHAAY
Sbjct: 116 AKWIRVLFGEITRLLNHIMGVTTHALDVGAMTPFFWMFEEREKLMEFYERVSGARMHAAY 175
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV+ D+P+GL+DDIY FI TF RLD+VE+MLT NR+W QRT D+G+VS EDALNY
Sbjct: 176 VRPGGVSQDMPLGLMDDIYQFIQTFPQRLDDVEEMLTNNRIWKQRTVDIGVVSVEDALNY 235
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGIKWDLRK QPYD Y+ EFD+PIG +G+ + M+EMR+SL+I+ Q
Sbjct: 236 GFSGVMLRGSGIKWDLRKAQPYDRYDQVEFDVPIGKNGDCYDRYLCRMEEMRESLKIILQ 295
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP GE++ DD KIS P RSEMK GY VPPG TYTA+EAPKGE
Sbjct: 296 CLNKMPPGEIKVDDAKISPPKRSEMKDSMESLIHHFKLYTEGYQVPPGGTYTAIEAPKGE 355
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGTSKPYRCKIKAPGFAHLA + I KG LAD+VA+I
Sbjct: 356 FGVYLVADGTSKPYRCKIKAPGFAHLAGTDFITKGHMLADVVAVI 400
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQ YSLAVEKLLNI+
Sbjct: 52 GEVVVRADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQAYSLAVEKLLNID 111
Query: 363 VPLRAKYIRVMF 374
+P RAK+IRV+F
Sbjct: 112 IPERAKWIRVLF 123
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 1 MKYVVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
M V+YPD+ KW I D +P EK + NM INFGPQHPAAHGVL L E+
Sbjct: 1 MTGTVMYPDENSAKWDI----DEPIP-EKGVTNMTINFGPQHPAAHGVLRLVLEL 50
>gi|410986790|ref|XP_003999692.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Felis catus]
Length = 447
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 142 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 200
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 201 VSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIG 260
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+PIG+ G+ + ++E
Sbjct: 261 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEE 320
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 321 MRQSLRIILQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 380
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 381 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 435
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 87 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 146
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 147 PPPRAQWIRVLF 158
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 35 VMYPTKETAHWKPPPWNDVDPPKDTMVTNLTLNFGPQHPAAHGVLRLVMELS 86
>gi|307183938|gb|EFN70526.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Camponotus floridanus]
Length = 470
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/282 (68%), Positives = 231/282 (81%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNHIM +GTHALD+GA+TPFFW+FEEREK+MEFYER SGARMHAAY+RP
Sbjct: 177 IRVLFAEITRILNHIMGIGTHALDIGALTPFFWMFEEREKLMEFYERVSGARMHAAYIRP 236
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY++ S +S +DE+ED+LTENR+W QRT D+G+VSAEDALN+GFS
Sbjct: 237 GGVSLDLPLGLMDDIYNWASKYSGIIDEIEDLLTENRIWRQRTIDIGVVSAEDALNWGFS 296
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRKV PYD Y+ +FD+P+GT+G+ + ++EMR+SLRI+ Q +N
Sbjct: 297 GVMLRGSGIKWDLRKVAPYDAYDLIDFDVPVGTNGDCYDRYLCRIQEMRESLRIIHQCLN 356
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
MP GEVR DD KI P R EMK G+ VPPGATYTA+EAPKGEFGV
Sbjct: 357 NMPAGEVRCDDAKIVPPRREEMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGV 416
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDG+SKPYRCKIKAPGFAHLA L+ +G FLADIVAII
Sbjct: 417 YLVSDGSSKPYRCKIKAPGFAHLAGLQYMGPKHFLADIVAII 458
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 67/73 (91%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQC+SLA+EKLLNI+
Sbjct: 110 GEIVVSADPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMCNEQCFSLAIEKLLNID 169
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIRV+F
Sbjct: 170 VPLRAKYIRVLFA 182
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ I N+ INFGPQHPAAHGVL L E+
Sbjct: 81 QQTIENIKINFGPQHPAAHGVLRLILEL 108
>gi|225708390|gb|ACO10041.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Osmerus mordax]
Length = 462
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/285 (68%), Positives = 229/285 (80%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF E+TRILNHIMA+ THALD+GAMTPFFWLFEEREKM EFYER SGARMHAAY
Sbjct: 166 AQWIRVLFGELTRILNHIMAITTHALDIGAMTPFFWLFEEREKMFEFYERVSGARMHAAY 225
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV D+P+GL+DDIY + FS R+DEVE+MLT NR+W RT D+GIV+AE+ALNY
Sbjct: 226 VRPGGVHQDMPLGLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVDIGIVTAEEALNY 285
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGIKWDLRK QPYD Y+ EFD+PIGT+G+ + ++EMRQSLRI+ +
Sbjct: 286 GFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDVPIGTNGDCYDRYLCRVEEMRQSLRIMLE 345
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A+NKMP GE++ DD K++ P R EMK GY VPPGATYTAVEAPKGE
Sbjct: 346 ALNKMPAGEIKVDDAKVAPPKRFEMKMSMESLIHHFKLYTEGYQVPPGATYTAVEAPKGE 405
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 406 FGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMAKGHMLADVVAII 450
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 63/69 (91%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+ PL
Sbjct: 105 VKKCDPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPL 164
Query: 366 RAKYIRVMF 374
RA++IRV+F
Sbjct: 165 RAQWIRVLF 173
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KW WND P+EK++ N+ INFGPQHPAAHGVL L E++
Sbjct: 50 VMYPSAITAKWTPPPWNDIDPPMEKEVSNLTINFGPQHPAAHGVLRLVLELS 101
>gi|148225797|ref|NP_001089829.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Xenopus laevis]
gi|80479245|gb|AAI08511.1| MGC130896 protein [Xenopus laevis]
Length = 459
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 231/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIMAV HALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 154 LLNIQPP-PRAQWIRVLFGEITRILNHIMAVTCHALDIGAMTPFFWMFEEREKMFEFYER 212
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY FI FS R+DEVE+MLT NR+W RT D+G
Sbjct: 213 VSGARMHAAYVRPGGVHQDMPLGLMDDIYEFIKNFSIRVDEVEEMLTNNRIWKNRTVDIG 272
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+VSAEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 273 VVSAEDALNYGFSGVMLRGSGIQWDLRKSQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 332
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P RSEMK GY VPPG T
Sbjct: 333 MRQSLRIILQCLNKMPEGEIKVDDAKVSPPKRSEMKHSMESLIHHFKLYTEGYQVPPGTT 392
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+++PYRCKIKAPGFAHLA L+ + +G LAD+VAII
Sbjct: 393 YTAIEAPKGEFGVYLVSDGSTRPYRCKIKAPGFAHLAGLDMMSQGHMLADVVAII 447
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 62/69 (89%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYF+RLDYVSMMCNEQ YSLAVEKLLNI+ P
Sbjct: 102 VKRCDPHIGLLHRGTEKLIEYKTYLQALPYFNRLDYVSMMCNEQAYSLAVEKLLNIQPPP 161
Query: 366 RAKYIRVMF 374
RA++IRV+F
Sbjct: 162 RAQWIRVLF 170
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KW WND P++K + N+ INFGPQHPAAHGVL L E++
Sbjct: 47 VMYPSTITEKWVPAPWNDKDPPIQKAVSNLTINFGPQHPAAHGVLRLVMELS 98
>gi|149759791|ref|XP_001503853.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like isoform 1 [Equus caballus]
Length = 463
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQS+RI+ Q +N+MP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSVRIISQCLNRMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPTKETAHWKPPPWNDVDPPKDTMVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|350646857|emb|CCD58578.1| NADH-ubiquinone oxidoreductase fe-s protein 2 (ndufs2), putative
[Schistosoma mansoni]
Length = 664
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/334 (58%), Positives = 240/334 (71%), Gaps = 21/334 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L++EITRI+NH +AVG+ LD+G +TP FWLFEEREKM EFYER SGARMHA
Sbjct: 162 PRAKYIRTLYSEITRIMNHCLAVGSTVLDIGGITPIFWLFEEREKMFEFYERVSGARMHA 221
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGGV LD+P+GL+DDIY FI F RLDE+ D+L +N +WI RTKDVGIVSAEDAL
Sbjct: 222 AYIRPGGVYLDMPLGLMDDIYQFIQKFPQRLDEISDLLFDNPIWITRTKDVGIVSAEDAL 281
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
+ GFSGVMLRGSGIKWDLRK QPYD YE+ +FD+P+G HG+ ++ M+EMRQSLRI+
Sbjct: 282 DLGFSGVMLRGSGIKWDLRKTQPYDAYEDMDFDVPVGVHGDCYDRFIVRMEEMRQSLRIM 341
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
EQ +NKMP GE++ DD KI P R+EMK GY VPPG+TYTAVEAPK
Sbjct: 342 EQCLNKMPKGEIKVDDAKICPPKRAEMKSSMEALIHHFKLFSEGYLVPPGSTYTAVEAPK 401
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA-IIDPHIGLLHRGTE 321
GEFGVYLVSDGT+KPYRCKIKAPGFAH+AA++K+ +G L D+VA I+ IG L
Sbjct: 402 GEFGVYLVSDGTNKPYRCKIKAPGFAHMAAIDKLCRGFMLPDVVAVIVSESIGQLESMIH 461
Query: 322 KLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAV 355
L + + RL+ N C L+
Sbjct: 462 SLKSSLELDEINKLYHRLNQDIQNINSNCDRLST 495
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/67 (89%), Positives = 64/67 (95%)
Query: 309 IDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAK 368
+DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY SMMCNEQCYSLAVEKLLNIEVP RAK
Sbjct: 106 LDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYASMMCNEQCYSLAVEKLLNIEVPPRAK 165
Query: 369 YIRVMFT 375
YIR +++
Sbjct: 166 YIRTLYS 172
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 6/45 (13%)
Query: 17 IINWNDNLVPVE------KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ N + P++ ++++++ +NFGPQHPAAHGVL L E+
Sbjct: 54 VVKANTTVQPIDFFNVSHQEVQSVHLNFGPQHPAAHGVLRLIMEL 98
>gi|432921327|ref|XP_004080103.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Oryzias latipes]
Length = 466
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/287 (67%), Positives = 230/287 (80%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +L+ E+TRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER SGARMHA
Sbjct: 168 PRAQWIRVLYGELTRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHA 227
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV D+P+GL+DDIY + FS R+DEVE+MLT NR+W RT +G+V+AE+AL
Sbjct: 228 AYVRPGGVHQDMPLGLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVGIGVVTAEEAL 287
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYGFSGVMLRGSGIKWDLRK QPYD Y+ EFD+PIG++G+ + ++EMRQSLRI+
Sbjct: 288 NYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDVPIGSNGDCYDRYLCRVEEMRQSLRIM 347
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+A+NKMP GE++ DD K++ P RSEMK GY VPPGATYTAVEAPK
Sbjct: 348 HEALNKMPEGEIKVDDAKVAPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAVEAPK 407
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 408 GEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMAKGHMLADVVAII 454
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 62/69 (89%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+ P
Sbjct: 109 VKKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPP 168
Query: 366 RAKYIRVMF 374
RA++IRV++
Sbjct: 169 RAQWIRVLY 177
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 33/53 (62%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KW WND P EK + N+ INFGPQHPAAHGVL L E++
Sbjct: 53 AVMYPTAVNEKWVPPPWNDKDPPAEKDVSNLTINFGPQHPAAHGVLRLVMELS 105
>gi|350418792|ref|XP_003491968.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Bombus impatiens]
Length = 478
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/279 (68%), Positives = 227/279 (81%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITR+LNH M +GTHALD+GAMTPFFWLFEEREK+MEFYER SGARMHAAY+RPGGV
Sbjct: 188 LFAEITRVLNHTMNIGTHALDIGAMTPFFWLFEEREKLMEFYERVSGARMHAAYIRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
ALDIP+GL+DDIY + + F+ARLDEVED+L+ENR+W+ RTKD+G V+ + AL++GFSGVM
Sbjct: 248 ALDIPLGLMDDIYEWSTKFAARLDEVEDLLSENRIWVSRTKDIGTVTMQQALDWGFSGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQAINKMP 225
LRGSG+KWD+R+ PYD Y+ EFD+P+G +G+ + M+EMRQSLRI+ Q +N+MP
Sbjct: 308 LRGSGVKWDIREKAPYDAYDLVEFDVPVGVNGDCLDRYLCRMEEMRQSLRIIYQCLNQMP 367
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEV+ DD KI P R EMK G+ VPPGATYTA+EAPKGEFGVYLV
Sbjct: 368 EGEVKVDDAKIVPPKREEMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGVYLV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+SKPYRCKIKAPGFAHLAAL +G G FLADIVAII
Sbjct: 428 SDGSSKPYRCKIKAPGFAHLAALRHMGPGCFLADIVAII 466
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 66/73 (90%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
A+ V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQC+S+A+EKLLNIE
Sbjct: 118 AEYVLRADPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMCNEQCFSIAIEKLLNIE 177
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIR +F
Sbjct: 178 VPLRAKYIRTLFA 190
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
RN V+NFGPQHPAAHGVL L E+
Sbjct: 93 RNTVLNFGPQHPAAHGVLRLILEL 116
>gi|229366982|gb|ACQ58471.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Anoplopoma fimbria]
Length = 467
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/287 (67%), Positives = 229/287 (79%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +L+ E+TRILNHIMA+ THALD+GAMTPFFWLFEEREKM EFYER SGARMHA
Sbjct: 169 PRAQWIRVLYGEMTRILNHIMAITTHALDIGAMTPFFWLFEEREKMFEFYERVSGARMHA 228
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV D+P+GL+DDIY + FS R+DEVE+MLT NR+W RT D+G+V++E+AL
Sbjct: 229 AYVRPGGVHQDLPLGLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVDIGVVTSEEAL 288
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYGFSGVMLRGSGIKWDLRK QPYD Y+ EFD+PIG G+ + ++EMRQSLRI+
Sbjct: 289 NYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDVPIGIKGDCYDRYLCRVEEMRQSLRIM 348
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q++NKMP GE++ DD K++ P RSEMK GY VPPGATYTAVEAPK
Sbjct: 349 LQSLNKMPEGEIKVDDAKVAPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAVEAPK 408
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 409 GEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMAKGHMLADVVAII 455
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/69 (82%), Positives = 62/69 (89%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+ P
Sbjct: 110 VKKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPP 169
Query: 366 RAKYIRVMF 374
RA++IRV++
Sbjct: 170 RAQWIRVLY 178
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 33/53 (62%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KW WND P EK + N+ INFGPQHPAAHGVL L E++
Sbjct: 54 AVMYPTAINEKWTPPPWNDKDPPAEKDVSNLTINFGPQHPAAHGVLRLVLELS 106
>gi|344287004|ref|XP_003415246.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Loxodonta africana]
Length = 463
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 232/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEVEEMLTNNRIWKNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
++++E ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 VITSEHALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIILQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE W WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPTKETAHWAPPPWNDMDPPKDTMVSNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|225709630|gb|ACO10661.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Caligus rogercresseyi]
Length = 475
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/282 (68%), Positives = 228/282 (80%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF E+TRILNH+M +GTH LD+G +TPFFW+FEEREKMMEFYERASGARMHAAYVRP
Sbjct: 182 IRVLFGELTRILNHLMGIGTHILDLGGITPFFWMFEEREKMMEFYERASGARMHAAYVRP 241
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DIPIGLLDDIY FIS F RLDEVED++T NR+++ RT D+G+VS+EDALNYGFS
Sbjct: 242 GGVHRDIPIGLLDDIYEFISKFPQRLDEVEDLVTNNRIFVSRTTDIGVVSSEDALNYGFS 301
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRK QPYD Y+ +FD+PIG G+ +I M+EMRQS+RI++Q +N
Sbjct: 302 GVMLRGSGIKWDLRKSQPYDAYDLVDFDVPIGRKGDCYDRYMIRMEEMRQSVRIIQQCLN 361
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
MP GEVRTDD K P+R+EMK GY VP G+TYTA+EAPKGEFGV
Sbjct: 362 DMPEGEVRTDDAKCIPPTRAEMKSSMEALIHHFKLFTQGYTVPAGSTYTAIEAPKGEFGV 421
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDG+S+PYRCKIKAPGFAHLAA++ + K FLAD+VAII
Sbjct: 422 YLVSDGSSRPYRCKIKAPGFAHLAAMDHMSKNGFLADVVAII 463
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 66/72 (91%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSM+CNEQ YSLAVEKLLNI+
Sbjct: 115 GELVREADPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMVCNEQAYSLAVEKLLNID 174
Query: 363 VPLRAKYIRVMF 374
VPLRAKYIRV+F
Sbjct: 175 VPLRAKYIRVLF 186
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 19 NWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ N P+EK +RN+ +NFGPQHPAAHGVL L ++
Sbjct: 77 DLNHYAEPIEKTVRNIQVNFGPQHPAAHGVLRLVLQL 113
>gi|340722990|ref|XP_003399882.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Bombus terrestris]
Length = 492
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/279 (69%), Positives = 225/279 (80%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIM +GTHALD+GAMTPFFWLFEEREK+MEFYER SGARMHAAY+RPGGV
Sbjct: 202 LFAEITRILNHIMNIGTHALDIGAMTPFFWLFEEREKLMEFYERVSGARMHAAYIRPGGV 261
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
ALD+P+GL+DDIY + S F RLDEVEDML+ENR+W+ RTKD+G V+ + AL++GFSGVM
Sbjct: 262 ALDMPLGLMDDIYEWASKFGERLDEVEDMLSENRIWVGRTKDIGTVTMQQALDWGFSGVM 321
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQAINKMP 225
LRGSGIKWD+RK PYD Y+ EFD+PIG +G+ + M+EMRQSLRI+ Q +N+MP
Sbjct: 322 LRGSGIKWDIRKKAPYDAYDLVEFDVPIGVNGDCLDRYLCRMEEMRQSLRIIYQCLNQMP 381
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEV+ DD KI P R EMK G+ VPPGATYTA+EAPKGEFGVYLV
Sbjct: 382 EGEVKVDDAKIVPPRREEMKTSMEALIHHFKLFTQGFQVPPGATYTAIEAPKGEFGVYLV 441
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+SKPYRCKIKAPGFAHLAA+ + G FLADIVAII
Sbjct: 442 SDGSSKPYRCKIKAPGFAHLAAMRHMAPGCFLADIVAII 480
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/66 (89%), Positives = 63/66 (95%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQC+S+A+EKLLNIEVPLRAKY
Sbjct: 139 DPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMCNEQCFSMAIEKLLNIEVPLRAKY 198
Query: 370 IRVMFT 375
IR +F
Sbjct: 199 IRTLFA 204
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
RN+VINFGPQHPAAHGVL L E+
Sbjct: 107 RNVVINFGPQHPAAHGVLRLILEL 130
>gi|320163618|gb|EFW40517.1| NADH dehydrogenase iron-sulfur protein 2 [Capsaspora owczarzaki
ATCC 30864]
Length = 472
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/287 (66%), Positives = 233/287 (81%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LF EITR+LNHIMAV THA+DVGA+TPF W+FEEREKMMEFYERASGAR+HA
Sbjct: 174 PRAQYIRVLFGEITRLLNHIMAVTTHAMDVGALTPFLWMFEEREKMMEFYERASGARLHA 233
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGVALD+P+GL++DIY+FI FS+R+DE+EDMLTENR+W QR D+GIV+A AL
Sbjct: 234 AYVRPGGVALDLPLGLMEDIYNFIKPFSSRIDEMEDMLTENRIWKQRLVDIGIVTARQAL 293
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GFSGVMLRGSGI WDLRKVQPYDGYE F+FD+P+G G+ + ++EMRQS+RI+
Sbjct: 294 DWGFSGVMLRGSGIAWDLRKVQPYDGYEKFKFDVPVGKRGDSYDRYLCRVEEMRQSIRII 353
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
QA+N MP GEVR DD KI+ P R+EMK GY VP GATYTAVEAPK
Sbjct: 354 MQALNDMPTGEVRIDDNKITPPRRAEMKESMEALIHHFKLFTEGYVVPAGATYTAVEAPK 413
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKI+APGFAHLA L+ + +G +AD+VA+I
Sbjct: 414 GEFGVYLVSDGSSRPYRCKIRAPGFAHLAGLDFMSRGHMIADVVALI 460
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NEQ YSLAVEKLLNI+
Sbjct: 112 GEVVHRADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMANEQAYSLAVEKLLNIQ 171
Query: 363 VPLRAKYIRVMF 374
P RA+YIRV+F
Sbjct: 172 APPRAQYIRVLF 183
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+ + N +NFGPQHPAAHGVL L E+
Sbjct: 83 ERHVSNYTMNFGPQHPAAHGVLRLVLEL 110
>gi|395535371|ref|XP_003769700.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Sarcophilus harrisii]
Length = 592
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/285 (66%), Positives = 228/285 (80%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNHIMA+ THALD+GAMTPFFW+FEEREKM EFYER SGARMHAAY
Sbjct: 296 AQWIRVLFGEITRLLNHIMALTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAY 355
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G+V+AE+ALNY
Sbjct: 356 IRPGGVHQDLPLGLMDDIYEFAKNFSIRIDELEEMLTNNRIWRNRTVDIGVVTAEEALNY 415
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++EMRQSLRI+ Q
Sbjct: 416 GFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIIHQ 475
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP GE++ DD K+S P R+EMK GY VPPGATYTA+EAPKGE
Sbjct: 476 CLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGE 535
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 536 FGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 580
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/72 (83%), Positives = 66/72 (91%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+
Sbjct: 232 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIQ 291
Query: 363 VPLRAKYIRVMF 374
PLRA++IRV+F
Sbjct: 292 PPLRAQWIRVLF 303
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP+KE WK WND P + ++ N+ +NFGPQHPAAHGVL L E++
Sbjct: 179 AVMYPNKETALWKPAPWNDVDPPKDIKVANVTLNFGPQHPAAHGVLRLVMELS 231
>gi|402856878|ref|XP_003893006.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 [Papio anubis]
gi|402856880|ref|XP_003893007.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 [Papio anubis]
Length = 463
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 232/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTP FWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+PIG+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIITQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDPPKDTMVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|226482320|emb|CAX73759.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Schistosoma
japonicum]
Length = 460
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/287 (66%), Positives = 228/287 (79%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LFAEITRI+NH +AVG+ LD+GA+TP FWLFEEREKM EFYER SGARMHA
Sbjct: 162 PRAKYIRTLFAEITRIMNHCLAVGSTILDIGAITPIFWLFEEREKMFEFYERVSGARMHA 221
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGGV LD+P+GL+DDIY FI F RLDE+ D+L +N +WI RTKDVG+VSAEDAL
Sbjct: 222 AYIRPGGVYLDMPLGLMDDIYRFIQKFPQRLDEISDLLLDNPIWITRTKDVGVVSAEDAL 281
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
+ GFSGVMLRGSGIKWDLRK QPYD Y + +FD+PIG HG+ +I M+EMRQSLRI+
Sbjct: 282 DLGFSGVMLRGSGIKWDLRKTQPYDAYADMDFDVPIGVHGDCYDRFMIRMEEMRQSLRII 341
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
EQ +NKMP GE+R DD KI P R+EMK GY VPPG+TYTA+EAPK
Sbjct: 342 EQCLNKMPKGEIRVDDAKICPPKRAEMKHSMEALIHHFKLFSEGYLVPPGSTYTAIEAPK 401
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDGT+KPYRCKIKAPGF+HLAA++K+ +G +AD+VA+I
Sbjct: 402 GEFGVYLVSDGTNKPYRCKIKAPGFSHLAAIDKMCRGFLIADVVAVI 448
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/67 (89%), Positives = 63/67 (94%)
Query: 309 IDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAK 368
+DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY SMMCNEQCY+LAVEKLLNIEVP RAK
Sbjct: 106 LDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYASMMCNEQCYALAVEKLLNIEVPPRAK 165
Query: 369 YIRVMFT 375
YIR +F
Sbjct: 166 YIRTLFA 172
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 16 KIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+II +D +++++ +NFGPQHPAAHGVL L E+
Sbjct: 59 EIIPPSDFFKGTHYEVQSVHLNFGPQHPAAHGVLRLIMEL 98
>gi|241256858|ref|XP_002404495.1| NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit, putative
[Ixodes scapularis]
gi|215496653|gb|EEC06293.1| NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit, putative
[Ixodes scapularis]
Length = 462
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/285 (68%), Positives = 227/285 (79%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNHIMAVGTH LD+G +TPFFWLFEEREK+MEFYER SGARMHAAY
Sbjct: 166 AKYIRVLFGEITRILNHIMAVGTHCLDIGGLTPFFWLFEEREKLMEFYERVSGARMHAAY 225
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P+GLLDDIY + FS RLDEVED+LT NR+W QRT D+G++SAEDAL++
Sbjct: 226 VRPGGVAQDMPLGLLDDIYDWAQKFSQRLDEVEDLLTGNRIWRQRTIDIGVISAEDALDW 285
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G SGVMLRGSGIKWDLRK QPYD YE+FEF++P+G G+ + M+EMRQSL I+ Q
Sbjct: 286 GCSGVMLRGSGIKWDLRKTQPYDSYEDFEFEVPVGLKGDCYDRYLCRMEEMRQSLLIIHQ 345
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G VRTDD K PSR EMK GY VPPGATYTAVEAPKGE
Sbjct: 346 CLNKMPPGPVRTDDNKCVPPSREEMKTSMEALIHHFKLFTEGYQVPPGATYTAVEAPKGE 405
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG+Y++SDG+S+PYRCKIKAPGFAHL+AL+ IG+ LADIVAII
Sbjct: 406 FGLYMISDGSSRPYRCKIKAPGFAHLSALDFIGRNHMLADIVAII 450
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKL+EYKTYTQALPY DRLDYVSMM NEQCYSLAVEKLLNI+
Sbjct: 102 GETVVRADPHIGLLHRGTEKLMEYKTYTQALPYMDRLDYVSMMANEQCYSLAVEKLLNID 161
Query: 363 VPLRAKYIRVMF 374
+P RAKYIRV+F
Sbjct: 162 IPKRAKYIRVLF 173
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VV YPD+ +++ + N N+ P+EK++RNM INFGPQHPAAHGVL L E+
Sbjct: 49 VVFYPDEVSSQFVKLPRNRNIPPIEKKVRNMQINFGPQHPAAHGVLRLVLEL 100
>gi|126310813|ref|XP_001371966.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Monodelphis domestica]
Length = 463
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/285 (67%), Positives = 228/285 (80%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNHIMA+ THALD+GAMTPFFW+FEEREKM EFYER SGARMHAAY
Sbjct: 167 AQWIRVLFGEITRLLNHIMALTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAY 226
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G+V+AE+ALNY
Sbjct: 227 VRPGGVHQDMPLGLMDDIYEFAKNFSIRIDELEEMLTNNRIWRNRTIDIGVVTAEEALNY 286
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++EMRQSLRI+ Q
Sbjct: 287 GFSGVMLRGSGIQWDLRKTQPYDAYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSLRIILQ 346
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP GE++ DD K+S P R+EMK GY VPPGATYTA+EAPKGE
Sbjct: 347 CLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGE 406
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 407 FGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 66/72 (91%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P+RA++IRV+F
Sbjct: 163 PPIRAQWIRVLF 174
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP+KE WK WND P + ++ N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPNKETALWKPAPWNDVDPPKDTKVANVTLNFGPQHPAAHGVLRLVMELS 102
>gi|355745838|gb|EHH50463.1| hypothetical protein EGM_01296 [Macaca fascicularis]
Length = 463
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMA+ THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAMTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDMDPPKDTMVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|380813052|gb|AFE78400.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 precursor [Macaca mulatta]
gi|384947236|gb|AFI37223.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 precursor [Macaca mulatta]
Length = 457
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/295 (65%), Positives = 232/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTP FWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPSKETAHWKPPPWNDMDPPKDTMVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|384475937|ref|NP_001245114.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Macaca mulatta]
gi|380788983|gb|AFE66367.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Macaca mulatta]
gi|380807979|gb|AFE75865.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Macaca mulatta]
gi|380813050|gb|AFE78399.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Macaca mulatta]
gi|384942342|gb|AFI34776.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Macaca mulatta]
Length = 463
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/295 (65%), Positives = 232/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTP FWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPSKETAHWKPPPWNDMDPPKDTMVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|380014344|ref|XP_003691195.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Apis florea]
Length = 478
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/279 (69%), Positives = 225/279 (80%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIM +GTHALD+GA+TPFFWLFEEREK+MEFYER SGARMHAAY+RPGGV
Sbjct: 188 LFAEITRILNHIMNIGTHALDIGALTPFFWLFEEREKLMEFYERVSGARMHAAYIRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL+DDIY + S F+ RLDEVED+LTENR+W RTKDVGIV+AE A+ +GFSGVM
Sbjct: 248 SLDMPLGLMDDIYEWASKFAFRLDEVEDLLTENRVWTGRTKDVGIVTAEQAIEWGFSGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI+WD+RK PYD Y+ EFD+PIG G+ + M+EMRQSLRI+ Q +N+MP
Sbjct: 308 LRGSGIQWDIRKKTPYDAYDLVEFDVPIGLKGDCYDRYLCRMEEMRQSLRIIYQCLNQMP 367
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEVR DD KI P R EMK G+ VPPG+TYTA+EAPKGEFGVYLV
Sbjct: 368 EGEVRIDDAKIVPPRREEMKTSMEALIHHFKLYTQGFQVPPGSTYTAIEAPKGEFGVYLV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+SKPYRCKIKAPGFAHLAA+ +G G LADIVAII
Sbjct: 428 SDGSSKPYRCKIKAPGFAHLAAMRHMGPGCLLADIVAII 466
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++ V DPHIGLLHRGTEKL+EYKTY QALPYFDRLDYVSMMCNEQC+S+A+EKLLNI+
Sbjct: 118 SEYVTRADPHIGLLHRGTEKLVEYKTYMQALPYFDRLDYVSMMCNEQCFSMAIEKLLNID 177
Query: 363 VPLRAKYIRVMFT 375
+PLRAKYIR +F
Sbjct: 178 IPLRAKYIRTLFA 190
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 11 EETKWKII--NWND---NLVPVEKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILN 60
+E W I +WN+ V + + RN+VINFGPQHPAAHGVL L E +TR
Sbjct: 67 KEKSWPFIKPSWNEPQTTSVQLAPEFRNVVINFGPQHPAAHGVLRLLIEMNSEYVTRADP 126
Query: 61 HI 62
HI
Sbjct: 127 HI 128
>gi|225719850|gb|ACO15771.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Caligus clemensi]
Length = 477
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/282 (67%), Positives = 227/282 (80%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF E+TRILNH+M +GTH LD+G +TPFFWLFEEREKMMEFYERASGARMHAAYVRP
Sbjct: 184 IRVLFGELTRILNHLMGIGTHILDLGGITPFFWLFEEREKMMEFYERASGARMHAAYVRP 243
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DIPIGLLDDIY FIS F R+DEVED++T NR++I RT+D+G++S+EDALNYGFS
Sbjct: 244 GGVHRDIPIGLLDDIYEFISKFPQRMDEVEDLVTTNRIFISRTEDIGVISSEDALNYGFS 303
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRK QPYD Y+ +FD+P+G G+ +I M+EMRQS+RI+ Q +N
Sbjct: 304 GVMLRGSGIKWDLRKSQPYDAYDLVDFDVPVGRKGDCYDRYLIRMEEMRQSVRIIHQCLN 363
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
MP GEVRTDD K PSR+EMK GY VP GATYTA+EAPKGEFGV
Sbjct: 364 DMPEGEVRTDDAKCIPPSRAEMKSSMEALIHHFKLFTQGYTVPAGATYTAIEAPKGEFGV 423
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLV DG+S+PYRCKIKAPGFAHLAA++ + K +LAD+VAII
Sbjct: 424 YLVFDGSSRPYRCKIKAPGFAHLAAMDHMSKNGYLADVVAII 465
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/72 (87%), Positives = 67/72 (93%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 117 GELVREADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQAYSLAVEKLLNID 176
Query: 363 VPLRAKYIRVMF 374
VPLRAKYIRV+F
Sbjct: 177 VPLRAKYIRVLF 188
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 26 PVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
P EK ++N+ +NFGPQHPAAHGVL L ++
Sbjct: 86 PYEKNVKNVQVNFGPQHPAAHGVLRLVLQL 115
>gi|226467736|emb|CAX69744.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Schistosoma
japonicum]
Length = 460
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/287 (66%), Positives = 227/287 (79%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LFAEITRI+NH +AVG+ LD+G +TP FWLFEEREKM EFYER SGARMHA
Sbjct: 162 PRAKYIRTLFAEITRIMNHCLAVGSTILDIGVITPIFWLFEEREKMFEFYERVSGARMHA 221
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGGV LD+P+GL+DDIY FI F RLDE+ D+L +N +WI RTKDVG+VSAEDAL
Sbjct: 222 AYIRPGGVYLDMPLGLMDDIYRFIQKFPQRLDEISDLLLDNPIWITRTKDVGVVSAEDAL 281
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
+ GFSGVMLRGSGIKWDLRK QPYD Y + +FD+PIG HG+ +I M+EMRQSLRI+
Sbjct: 282 DLGFSGVMLRGSGIKWDLRKTQPYDAYADMDFDVPIGVHGDCYDRFMIRMEEMRQSLRII 341
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
EQ +NKMP GE+R DD KI P R+EMK GY VPPG+TYTA+EAPK
Sbjct: 342 EQCLNKMPKGEIRVDDAKICPPKRAEMKHSMEALIHHFKLFSEGYLVPPGSTYTAIEAPK 401
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDGT+KPYRCKIKAPGF+HLAA++K+ +G +AD+VA+I
Sbjct: 402 GEFGVYLVSDGTNKPYRCKIKAPGFSHLAAIDKMCRGFLIADVVAVI 448
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/67 (89%), Positives = 63/67 (94%)
Query: 309 IDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAK 368
+DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY SMMCNEQCY+LAVEKLLNIEVP RAK
Sbjct: 106 LDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYASMMCNEQCYALAVEKLLNIEVPPRAK 165
Query: 369 YIRVMFT 375
YIR +F
Sbjct: 166 YIRTLFA 172
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 16 KIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+II +D +++++ +NFGPQHPAAHGVL L E+
Sbjct: 59 EIIPPSDFFKGTHYEVQSVHLNFGPQHPAAHGVLRLIMEL 98
>gi|390338714|ref|XP_786922.3| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Strongylocentrotus purpuratus]
Length = 465
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/282 (67%), Positives = 224/282 (79%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++ E+TRI NHIMAVGTHALD+GAMTPFFWLFEEREK E YER GARMHAAYVRP
Sbjct: 172 IRVMMGELTRIANHIMAVGTHALDIGAMTPFFWLFEEREKTFELYERVCGARMHAAYVRP 231
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+ D+P+G LDD+Y FI FS R+DE+E+MLT NR+W RT D+G+V+AEDALNYGFS
Sbjct: 232 GGVSQDLPLGFLDDMYDFIKNFSIRIDELEEMLTNNRIWKDRTVDIGVVTAEDALNYGFS 291
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGIKWDLRKVQPYDGYE FDIPIG+ G+ + ++EMRQSLRIV Q +N
Sbjct: 292 GVMLRGSGIKWDLRKVQPYDGYEKMNFDIPIGSKGDCYDRYLCRVEEMRQSLRIVHQCLN 351
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP GE++ DD KIS P R+EMK G+ VPPGATYTA+EAPKGEFGV
Sbjct: 352 EMPEGEIKVDDHKISPPGRAEMKDSMESLIHHFKHFTQGFQVPPGATYTAIEAPKGEFGV 411
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
Y+VSDG+SKPYRCKI+APGF HLA L+K+ KG LAD+VAII
Sbjct: 412 YMVSDGSSKPYRCKIRAPGFLHLAGLDKVCKGHMLADVVAII 453
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/66 (89%), Positives = 60/66 (90%)
Query: 309 IDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAK 368
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEK+LNI VP RAK
Sbjct: 111 CDPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMCNEQAYSLAVEKMLNITVPERAK 170
Query: 369 YIRVMF 374
YIRVM
Sbjct: 171 YIRVMM 176
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YPD+ KW W+D EK + N+VINFGPQHPAAHGVL L E++
Sbjct: 53 VMYPDENTAKWPSPPWDDRDPIAEKDVANLVINFGPQHPAAHGVLRLVLELS 104
>gi|328775921|ref|XP_397330.3| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 [Apis mellifera]
Length = 480
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/279 (68%), Positives = 225/279 (80%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNHIM +GTHALD+GA+TPFFWLFEEREK+MEFYER SGARMHAAY+RPGGV
Sbjct: 190 LFAEITRILNHIMNIGTHALDIGALTPFFWLFEEREKLMEFYERVSGARMHAAYIRPGGV 249
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GLLDDIY + S F+ RLDE+ED+LTENR+W RTKD+G+V+AE A+ +GFSGVM
Sbjct: 250 SLDMPLGLLDDIYEWSSKFTLRLDEIEDLLTENRVWTGRTKDIGVVTAEQAIEWGFSGVM 309
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI+WD+RK PYD Y+ EFD+PIG G+ + M+EMRQSLRI+ Q +N+MP
Sbjct: 310 LRGSGIQWDIRKKTPYDAYDLVEFDVPIGLKGDCYDRYLCRMEEMRQSLRIIYQCLNQMP 369
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEVR DD KI P R EMK G+ VPPG+TYTA+EAPKGEFGVYLV
Sbjct: 370 EGEVRIDDAKIVPPRREEMKTSMEALIHHFKLYTQGFQVPPGSTYTAIEAPKGEFGVYLV 429
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYRCKIKAPGFAHLAAL +G G LADIVAII
Sbjct: 430 SDGSSRPYRCKIKAPGFAHLAALRHMGPGCLLADIVAII 468
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 66/72 (91%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++ V DPHIGLLHRGTEKL+EYKTY QALPYFDRLDYVSMMCNEQC+S+A+EKLLNI+
Sbjct: 120 SEYVTRADPHIGLLHRGTEKLVEYKTYMQALPYFDRLDYVSMMCNEQCFSMAIEKLLNID 179
Query: 363 VPLRAKYIRVMF 374
+PLRAKYIR +F
Sbjct: 180 IPLRAKYIRTLF 191
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Query: 11 EETKWKII--NWND--NLVPVEKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNH 61
+E W I +WN+ + + + RN+VINFGPQHPAAHGVL L E +TR H
Sbjct: 70 KEKIWPYIKPSWNEPQTVSQLTPEFRNVVINFGPQHPAAHGVLRLLIEMNSEYVTRADPH 129
Query: 62 I 62
I
Sbjct: 130 I 130
>gi|442757571|gb|JAA70944.1| Putative nadh:ubiquinone oxidoreductase ndufs2/49 kda subunit
[Ixodes ricinus]
Length = 462
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/285 (67%), Positives = 227/285 (79%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNHIMAVGTH LD+G +TPFFWLFEEREK+MEFYER SGARMHAAY
Sbjct: 166 AKYIRVLFGEITRILNHIMAVGTHCLDIGGLTPFFWLFEEREKLMEFYERVSGARMHAAY 225
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P+GLLDDIY + FS RLDEVED+LT NR+W QRT D+G+++AEDAL++
Sbjct: 226 VRPGGVAQDMPLGLLDDIYDWAQKFSQRLDEVEDLLTGNRIWKQRTIDIGVITAEDALDW 285
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G SGVMLRGSGIKWDLRK QPYD YE+F+F++P+G G+ + M+EMRQSL I+ Q
Sbjct: 286 GCSGVMLRGSGIKWDLRKTQPYDSYEDFDFEVPVGLKGDCYDRYLCRMEEMRQSLLIIHQ 345
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G VRTDD K PSR EMK GY VPPGATYTAVEAPKGE
Sbjct: 346 CLNKMPPGPVRTDDNKCVPPSREEMKTSMEALIHHFKLFTEGYQVPPGATYTAVEAPKGE 405
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG+Y++SDG+S+PYRCKIKAPGFAHL+AL+ IG+ LADIVAII
Sbjct: 406 FGLYMISDGSSRPYRCKIKAPGFAHLSALDFIGRNHMLADIVAII 450
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKL+EYKTYTQALPY DRLDYVSMM NEQCYSLAVEKLLNI+
Sbjct: 102 GETVVRADPHIGLLHRGTEKLMEYKTYTQALPYMDRLDYVSMMANEQCYSLAVEKLLNID 161
Query: 363 VPLRAKYIRVMF 374
+P RAKYIRV+F
Sbjct: 162 IPKRAKYIRVLF 173
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VV YPD+ +++ + N N+ P+EK++RNM INFGPQHPAAHGVL L E+
Sbjct: 49 VVFYPDEVSSQFVKLPRNRNIPPIEKKVRNMQINFGPQHPAAHGVLRLVLEL 100
>gi|355558662|gb|EHH15442.1| hypothetical protein EGK_01532 [Macaca mulatta]
Length = 463
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/295 (65%), Positives = 231/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THA D+GAMTP FWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHAPDLGAMTPLFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVQKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AAMYPSKETAHWKPPPWNDMDPPKDTMVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|427779543|gb|JAA55223.1| Putative nadh:ubiquinone oxidoreductase ndufs2/49 kda subunit
[Rhipicephalus pulchellus]
Length = 486
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/285 (67%), Positives = 228/285 (80%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNHIMA+GTH LD+G +TPFFWLFEEREK+MEFYER SGARMHAAY
Sbjct: 190 AKYIRVLFGEITRILNHIMAIGTHCLDIGGLTPFFWLFEEREKLMEFYERVSGARMHAAY 249
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV+ D+P+GL+DDIY + + FS RLDEVED+LT NR+W QRT D+GI++AE+AL++
Sbjct: 250 VRPGGVSQDMPLGLMDDIYDWATKFSERLDEVEDLLTGNRIWKQRTVDIGIITAENALDW 309
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G SGVMLRGSGIKWDLRK QPYD YE+FEFD+PIG G+ + M+EMRQSL I+ Q
Sbjct: 310 GCSGVMLRGSGIKWDLRKTQPYDSYEDFEFDVPIGLKGDCYDRYLCRMEEMRQSLNIIYQ 369
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A+NKMP G V+TDD K PSR EMK GY VPPG TYTAVEAPKGE
Sbjct: 370 ALNKMPPGPVKTDDNKCVPPSREEMKTSMEALIHHFKLFTEGYQVPPGVTYTAVEAPKGE 429
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG+Y++SDG+S+PYRCKIKAPGFAHL+AL+ IGK LADIVAII
Sbjct: 430 FGLYMISDGSSRPYRCKIKAPGFAHLSALDFIGKNHMLADIVAII 474
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKL+EYKTYTQALPY DRLDYVSMM NEQCYSLAVEKLLNI+
Sbjct: 126 GETVVRADPHIGLLHRGTEKLMEYKTYTQALPYMDRLDYVSMMANEQCYSLAVEKLLNID 185
Query: 363 VPLRAKYIRVMF 374
+P RAKYIRV+F
Sbjct: 186 IPKRAKYIRVLF 197
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%)
Query: 1 MKYVVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
M + PD++ K + + ND L EKQ+RNM INFGPQHPAAHGVL L E+
Sbjct: 70 MSGLYFAPDEDMKKIQPLPPNDYLEGPEKQVRNMQINFGPQHPAAHGVLRLVLEL 124
>gi|90086245|dbj|BAE91675.1| unnamed protein product [Macaca fascicularis]
Length = 395
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/295 (65%), Positives = 231/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTP FWLFEEREKM EFYER
Sbjct: 90 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPLFWLFEEREKMFEFYER 148
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E+MLT NR+W RT D+G
Sbjct: 149 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEEMLTNNRIWRNRTIDIG 208
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+P+G+ G+ + ++E
Sbjct: 209 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPVGSRGDCYDRYLCRVEE 268
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 269 MRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 328
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFA LA L+K+ KG LAD+VAII
Sbjct: 329 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAPLAGLDKMSKGHMLADVVAII 383
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 35 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 94
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 95 PPPRAQWIRVLF 106
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 26 PVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 4 PKDTMVKNMTLNFGPQHPAAHGVLRLVMELS 34
>gi|346471997|gb|AEO35843.1| hypothetical protein [Amblyomma maculatum]
gi|346471999|gb|AEO35844.1| hypothetical protein [Amblyomma maculatum]
Length = 461
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/285 (65%), Positives = 228/285 (80%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNHIMA+GTH LD+G +TPFFWLFEEREK+MEFYER SGARMHAAY
Sbjct: 165 AKYIRVLFGEITRILNHIMAIGTHCLDIGGLTPFFWLFEEREKLMEFYERVSGARMHAAY 224
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV+ D+P+GL+DDIY + + FS RLDEVED+LT NR+W QRT D+G+++AE+AL++
Sbjct: 225 VRPGGVSQDMPLGLMDDIYDWATKFSQRLDEVEDLLTNNRIWKQRTVDIGVITAENALDW 284
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G SGVMLRGSGIKWDLRK QPYD YE+F+F++P+G +G+ + M+EMRQSLRI+ Q
Sbjct: 285 GCSGVMLRGSGIKWDLRKSQPYDSYEDFDFEVPVGLNGDCYDRYLCRMEEMRQSLRIIYQ 344
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N MP G V+TDD K PSR EMK GY VPPG TYTAVEAPKGE
Sbjct: 345 CLNNMPTGPVKTDDNKCVPPSREEMKTSMEALIHHFKLFTEGYQVPPGVTYTAVEAPKGE 404
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG+Y++SDG+S+PYRCKIKAPGFAHL+AL+ IGK LADIVAII
Sbjct: 405 FGLYMISDGSSRPYRCKIKAPGFAHLSALDFIGKNHMLADIVAII 449
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKL+EYKTYTQALPY DRLDYVSMM NEQCYSLAVEKLLNI+
Sbjct: 101 GETVVRADPHIGLLHRGTEKLMEYKTYTQALPYMDRLDYVSMMANEQCYSLAVEKLLNID 160
Query: 363 VPLRAKYIRVMF 374
+P RAKYIRV+F
Sbjct: 161 IPKRAKYIRVLF 172
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 33/55 (60%)
Query: 1 MKYVVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ V PD+ + ND EKQ+RNM INFGPQHPAAHGVL L E+
Sbjct: 45 LRGTVFIPDEISAQITESPPNDYYEKTEKQVRNMQINFGPQHPAAHGVLRLVLEL 99
>gi|383849689|ref|XP_003700477.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Megachile rotundata]
Length = 471
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/279 (67%), Positives = 224/279 (80%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNHIM VGTHALD+GA+TPFFWLFEEREK+MEFYER SGARMHAAY+RPGGV
Sbjct: 181 MFAELTRILNHIMGVGTHALDIGAITPFFWLFEEREKLMEFYERVSGARMHAAYIRPGGV 240
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+LD+P+GL+DDIY + + + RLDEVED+LT NR+W+ RT+++G VSAEDALN+G SGVM
Sbjct: 241 SLDLPLGLMDDIYDWCTKYGERLDEVEDLLTGNRIWVGRTQNIGTVSAEDALNWGCSGVM 300
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWDLRK PYD Y+ EFD+PIG +G+ + ++EMRQSLRI+ Q +N+MP
Sbjct: 301 LRGSGIKWDLRKAMPYDAYDLVEFDVPIGVNGDCYDRYLCRVEEMRQSLRIIYQCLNQMP 360
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEVR DD KI P R EMK G+ VPPG+TYTA+EAPKGEFGVYLV
Sbjct: 361 AGEVRIDDAKIVPPRREEMKTSMEALIHHFKLYTQGFQVPPGSTYTAIEAPKGEFGVYLV 420
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGTSKPYRCKIKAPGFAHLAAL +G LAD+VAII
Sbjct: 421 SDGTSKPYRCKIKAPGFAHLAALRHMGPSCMLADVVAII 459
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/66 (90%), Positives = 63/66 (95%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQC+SLA+EKLLNI+VPLRAKY
Sbjct: 118 DPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMCNEQCFSLAIEKLLNIDVPLRAKY 177
Query: 370 IRVMFT 375
IR MF
Sbjct: 178 IRTMFA 183
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N+ NFGPQHPAAHGVL L E+
Sbjct: 85 IKNVSFNFGPQHPAAHGVLRLILEM 109
>gi|358335119|dbj|GAA31968.2| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Clonorchis
sinensis]
Length = 609
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/295 (64%), Positives = 228/295 (77%), Gaps = 24/295 (8%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LFAE+TR++NH +AVG+H LDVGA+TP FWLFEEREKM EFYER SGARMHA
Sbjct: 105 PRAKYIRTLFAELTRLMNHCLAVGSHILDVGAITPIFWLFEEREKMFEFYERVSGARMHA 164
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGGV LD+P+GL+DD+Y F+ F R+DE+ D+L N +WI RTKDVG+VSAEDAL
Sbjct: 165 AYIRPGGVYLDLPLGLMDDMYQFLEKFVQRIDELCDLLLNNPIWINRTKDVGVVSAEDAL 224
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIV 217
+ GFSG MLRGSGIKWDLRK QPYD Y + EFD+PIG G+ + ++EMRQS+RI+
Sbjct: 225 DLGFSGPMLRGSGIKWDLRKAQPYDAYADMEFDVPIGLRGDCYDRFALRLEEMRQSVRIM 284
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+Q +NKMP GEV+ DD KI+ P R+EMK GY VPPGATYTAVEAPK
Sbjct: 285 QQCLNKMPPGEVKVDDAKITPPKRAEMKDSMEALIHHFKLFSEGYLVPPGATYTAVEAPK 344
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIGLLH 317
GEFGVYLVSDGT++PYRCKIKAPGFAHLAA++K+ G LAD+VA+ I LLH
Sbjct: 345 GEFGVYLVSDGTNRPYRCKIKAPGFAHLAAIDKLCHGFLLADVVAV----IALLH 395
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 63/67 (94%)
Query: 309 IDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAK 368
+DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY SMMCNEQCY+LAVEKLLN+E+P RAK
Sbjct: 49 LDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYASMMCNEQCYALAVEKLLNVEIPPRAK 108
Query: 369 YIRVMFT 375
YIR +F
Sbjct: 109 YIRTLFA 115
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N+ +NFGPQHPAAHGVL L E+
Sbjct: 17 EIQNVQLNFGPQHPAAHGVLRLIMEL 42
>gi|326434726|gb|EGD80296.1| NADH dehydrogenase iron-sulfur protein 2 [Salpingoeca sp. ATCC
50818]
Length = 457
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 188/282 (66%), Positives = 225/282 (79%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF E+TRILNHIM V THALDVGA+TPF WLFEEREKMMEFYER SGARMHAAYVRP
Sbjct: 164 IRVLFGELTRILNHIMGVTTHALDVGALTPFLWLFEEREKMMEFYERVSGARMHAAYVRP 223
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+PIGL++DIY + F AR+DEVE++LT NR+W QR DVG+V+A+DAL++GFS
Sbjct: 224 GGVSLDMPIGLMEDIYQWAQAFPARIDEVEELLTGNRIWKQRLVDVGVVTAKDALDWGFS 283
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGI WDLRK QPYD Y+ EFD+P+G+ G+ +I +EMRQS+RI+ Q +N
Sbjct: 284 GVMLRGSGIPWDLRKSQPYDAYDKVEFDVPVGSRGDSYDRYLIRCEEMRQSVRIINQCLN 343
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
MP GEVR DD K++ P R+EMK GY VPPG+TYTA+EAPKGEFGV
Sbjct: 344 DMPDGEVRVDDAKVAPPRRAEMKESMEALIHHFKLYTEGYQVPPGSTYTAIEAPKGEFGV 403
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDGTSKPYRCKIKAPGFAHLA L+ + KG LAD+VA+I
Sbjct: 404 YLVSDGTSKPYRCKIKAPGFAHLAGLDMMAKGHMLADVVALI 445
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/72 (84%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKLIEYK Y QALPYFDRLDYVSMMCNEQ YSLAVEKLLNIE
Sbjct: 97 GEIVRHADPHVGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIE 156
Query: 363 VPLRAKYIRVMF 374
VP RAKYIRV+F
Sbjct: 157 VPERAKYIRVLF 168
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 10 KEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ ++ I + + VP E+++ N+ +NFGPQHPAAHGVL L E+
Sbjct: 51 RKHKEFDIQHPTRDYVP-EQEVSNLTVNFGPQHPAAHGVLRLVLEL 95
>gi|225543453|ref|NP_001018481.2| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Danio rerio]
Length = 464
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/287 (65%), Positives = 226/287 (78%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LF E+TRI+NHIM + THALD+GAMTPFFW+FEEREK+ EFYER SGARMHA
Sbjct: 166 PRAQWIRVLFGEMTRIMNHIMGITTHALDIGAMTPFFWMFEEREKLFEFYERVSGARMHA 225
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV D+P+GL+DDIY + FS R+DEVE+MLT NR+W RT +G++ AE+AL
Sbjct: 226 AYVRPGGVHQDMPLGLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVGIGVIGAEEAL 285
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYGFSGVMLRGSGIKWDLRK QPYD Y+ EFD+ IGT+G+ + ++EMRQSLRI+
Sbjct: 286 NYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDMAIGTNGDCYDRYLCRVEEMRQSLRIM 345
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +NKMP GE++ DD KI+ P RSEMK GY VPPGATYTA+EAPK
Sbjct: 346 HQCLNKMPPGEIKVDDAKIAPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPK 405
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+++ +G LAD+VAII
Sbjct: 406 GEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDRMSQGHMLADVVAII 452
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 62/69 (89%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+ P
Sbjct: 107 VKKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQAPP 166
Query: 366 RAKYIRVMF 374
RA++IRV+F
Sbjct: 167 RAQWIRVLF 175
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
VV+YP KW WND P +K + N+ INFGPQHPAAHGVL L E++
Sbjct: 51 VVMYPSPSVAKWTPPPWNDKDPPAQKDLSNLTINFGPQHPAAHGVLRLVMELS 103
>gi|63100877|gb|AAH95651.1| Zgc:112036 [Danio rerio]
gi|182890580|gb|AAI64772.1| Zgc:112036 protein [Danio rerio]
Length = 370
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/287 (65%), Positives = 226/287 (78%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LF E+TRI+NHIM + THALD+GAMTPFFW+FEEREK+ EFYER SGARMHA
Sbjct: 72 PRAQWIRVLFGEMTRIMNHIMGITTHALDIGAMTPFFWMFEEREKLFEFYERVSGARMHA 131
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV D+P+GL+DDIY + FS R+DEVE+MLT NR+W RT +G++ AE+AL
Sbjct: 132 AYVRPGGVHQDMPLGLMDDIYEWCKNFSIRIDEVEEMLTNNRIWKNRTVGIGVIGAEEAL 191
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYGFSGVMLRGSGIKWDLRK QPYD Y+ EFD+ IGT+G+ + ++EMRQSLRI+
Sbjct: 192 NYGFSGVMLRGSGIKWDLRKSQPYDKYDEVEFDMAIGTNGDCYDRYLCRVEEMRQSLRIM 251
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +NKMP GE++ DD KI+ P RSEMK GY VPPGATYTA+EAPK
Sbjct: 252 HQCLNKMPPGEIKVDDAKIAPPKRSEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPK 311
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+++ +G LAD+VAII
Sbjct: 312 GEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDRMSQGHMLADVVAII 358
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 55/62 (88%)
Query: 313 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRV 372
+ LHRGTEKLIEYKTY QALPYFDRLDYVS MCNEQ YSLAVEKLLNI+ P RA++IRV
Sbjct: 20 LSTLHRGTEKLIEYKTYLQALPYFDRLDYVSTMCNEQAYSLAVEKLLNIQAPPRAQWIRV 79
Query: 373 MF 374
+F
Sbjct: 80 LF 81
>gi|195995589|ref|XP_002107663.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190588439|gb|EDV28461.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 418
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/285 (66%), Positives = 227/285 (79%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEI+R+LNHIMAV THALDVGAMTPFFW+FEEREKMMEFYER SGAR+HAAY
Sbjct: 122 AKFIRVLFAEISRLLNHIMAVTTHALDVGAMTPFFWMFEEREKMMEFYERVSGARLHAAY 181
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+GIV+A +AL+
Sbjct: 182 VRPGGVAQDLPLGLMDDIYSFCKNFSQRIDELEEMLTNNRIWRDRTVDIGIVTAREALDN 241
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVMLRGSGIKWDLRKVQPYD Y+ EFDIPIGT+G+ + ++EMRQSLRI+ Q
Sbjct: 242 SFSGVMLRGSGIKWDLRKVQPYDAYDKVEFDIPIGTNGDCYDRYLCRVEEMRQSLRIIMQ 301
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP GEVR DD KIS P R+EMK GY VPPGATYTA E+PKGE
Sbjct: 302 CLNQMPEGEVRVDDAKISPPRRAEMKDSMESLIHHFKLFTEGYNVPPGATYTATESPKGE 361
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VY+VSDG+SKPYR +I+APGFAHLAA++K+ + FLAD+VAI+
Sbjct: 362 LAVYVVSDGSSKPYRVRIRAPGFAHLAAVDKVARNHFLADVVAIL 406
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 64/73 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKL EYKTY QALPYFDRLDYVSMMCNEQCYSLAVEKLLNI+
Sbjct: 58 GETVKRCDPHIGLLHRGTEKLCEYKTYLQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIQ 117
Query: 363 VPLRAKYIRVMFT 375
+P RAK+IRV+F
Sbjct: 118 IPERAKFIRVLFA 130
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
VLYP++ W D + I + +NFGPQHPAAHGVL L E+
Sbjct: 15 VLYPNEISEIWD----KDGVY-----IGSYTVNFGPQHPAAHGVLRLVMELN 57
>gi|340375066|ref|XP_003386058.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Amphimedon queenslandica]
Length = 468
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/279 (67%), Positives = 221/279 (79%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNHIM+V +H LDVGA TPF WLFEEREKMMEFYER SGAR+HAAYVRPGGV
Sbjct: 178 MFGEITRILNHIMSVTSHILDVGANTPFLWLFEEREKMMEFYERVSGARLHAAYVRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P+GL+DDIY FIS FS RLDEVE++LT NR+W QR D+G+V + AL+YGFSGVM
Sbjct: 238 AQDLPLGLMDDIYDFISNFSVRLDEVEELLTNNRIWKQRVVDIGVVPVQTALDYGFSGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+KWDLRKVQPYD Y+ +FD+PIG +G+ + M+EMRQSLRI+ Q +N+MP
Sbjct: 298 LRGSGVKWDLRKVQPYDAYDEVDFDVPIGPNGDCYDRYLCRMEEMRQSLRIILQCMNQMP 357
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEV+ DD KI+ P R+EMK GY VPPG+TYTA+EAPKGEFGVYLV
Sbjct: 358 EGEVKVDDAKITPPKRAEMKDSMEALIHHFKLFTEGYNVPPGSTYTAIEAPKGEFGVYLV 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+SKPYRCKI+APGF HLA L + KG LAD+VAII
Sbjct: 418 SDGSSKPYRCKIRAPGFYHLAGLHMMSKGHMLADVVAII 456
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/72 (83%), Positives = 62/72 (86%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQC+SLAVE LL IE
Sbjct: 108 GETVVKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQCFSLAVENLLGIE 167
Query: 363 VPLRAKYIRVMF 374
VP RAKYIR MF
Sbjct: 168 VPKRAKYIRTMF 179
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 5/52 (9%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
VLYP+++ W + N+ VP K I N+ +NFGPQHPAAHGVL L E++
Sbjct: 61 VLYPNEDSAIWDVTNF----VPT-KPITNLTMNFGPQHPAAHGVLRLVMELS 107
>gi|335775948|gb|AEH58742.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein
2-like protein [Equus caballus]
Length = 272
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/272 (67%), Positives = 219/272 (80%), Gaps = 20/272 (7%)
Query: 57 RILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPI 116
R+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER SGARMHAAY+RPGGV D+P+
Sbjct: 1 RLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPL 60
Query: 117 GLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGI 176
GL+DDIY F FS R+DE+E+MLT NR+W RT D+G+V+AEDALNYGFSGVMLRGSGI
Sbjct: 61 GLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGI 120
Query: 177 KWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMPGGEVRT 231
+WDLRK QPYD Y+ EFD+PIG+ G+ + ++EMRQS+RI+ Q +N+MP GE++
Sbjct: 121 QWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSVRIISQCLNRMPPGEIKV 180
Query: 232 DDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSK 276
DD K+S P R+EMK GY VPPGATYTA+EAPKGEFGVYLVSDG+S+
Sbjct: 181 DDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSR 240
Query: 277 PYRCKIKAPGFAHLAALEKIGKGSFLADIVAI 308
PYRCKIKAPGFAHLA L+K+ KG LAD+VAI
Sbjct: 241 PYRCKIKAPGFAHLAGLDKMSKGHMLADVVAI 272
>gi|403294071|ref|XP_003938028.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Saimiri boliviensis boliviensis]
Length = 462
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/285 (67%), Positives = 230/285 (80%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR++NH+MAV THALD+GAMTPFFWLFEEREKM EFYER SGARMHAAY
Sbjct: 166 AQWIRVLFGEITRLMNHVMAVTTHALDIGAMTPFFWLFEEREKMFEFYERVSGARMHAAY 225
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G+V+AE+ALNY
Sbjct: 226 VRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEELLTNNRIWKNRTVDIGVVTAEEALNY 285
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+HG+ + ++EMRQSLRI+ Q
Sbjct: 286 GFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSHGDCYDRYLCRVEEMRQSLRIIVQ 345
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP GE++ DD K+S P R+EMK GY VPPGATYTA+EAPKGE
Sbjct: 346 CLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGE 405
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+S+PYRCKIKAPGFAHLAAL+++ KG LAD+VAII
Sbjct: 406 FGVYLVSDGSSRPYRCKIKAPGFAHLAALDRMSKGHMLADVVAII 450
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 62/69 (89%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI PL
Sbjct: 105 VRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPL 164
Query: 366 RAKYIRVMF 374
RA++IRV+F
Sbjct: 165 RAQWIRVLF 173
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP EE++WK WND EK ++NM +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYP-TEESQWKPPPWNDVDPIKEKIVKNMKLNFGPQHPAAHGVLRLVMELS 101
>gi|441635044|ref|XP_004089888.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial [Nomascus
leucogenys]
Length = 460
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/304 (64%), Positives = 236/304 (77%), Gaps = 21/304 (6%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIITQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIG 314
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ G LAD+VAII P I
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSXGHMLADVVAIIVPKIL 456
Query: 315 LLHR 318
L +
Sbjct: 457 YLEK 460
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPSKETAHWKPPPWNDVDPPNDTIVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|443731498|gb|ELU16603.1| hypothetical protein CAPTEDRAFT_170088 [Capitella teleta]
Length = 463
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/285 (64%), Positives = 224/285 (78%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR++NH M +G HALDVGAMTPFFWLFEEREK+ EFYER SG+RMHAAY
Sbjct: 167 AQFIRVLFGEITRLMNHTMGIGCHALDVGAMTPFFWLFEEREKLCEFYERVSGSRMHAAY 226
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV D+P+GL+DDI+ +I+ F +DEV+++LT NR+W +RT +G V++EDALNY
Sbjct: 227 VRPGGVDRDLPLGLMDDIHEWITKFGTIVDEVDNLLTNNRIWRERTIGIGTVTSEDALNY 286
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGIKWDLRK QPYD Y+ EFD+PIG +G+ +I M+EMRQS+RI+EQ
Sbjct: 287 GFSGVMLRGSGIKWDLRKTQPYDAYDKVEFDVPIGVNGDTYDRYLIRMEEMRQSVRIIEQ 346
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP GE++ DD K+ P R EMK GY VPPG+TYTA+EAPKGE
Sbjct: 347 CLNKMPPGEIKCDDAKVVPPKRVEMKNSMEALIHHFKLYSEGYNVPPGSTYTAIEAPKGE 406
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG++KPYRCKIKAPGFAHLAAL + KG LAD+VAII
Sbjct: 407 FGVYLVSDGSNKPYRCKIKAPGFAHLAALHHMSKGHMLADVVAII 451
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 61/72 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHR TEKLIE KT+ QALPYFDRLDY SMMCNEQ YSLAVEKLLNIE
Sbjct: 103 GETVVRADPHIGLLHRATEKLIENKTFLQALPYFDRLDYCSMMCNEQAYSLAVEKLLNIE 162
Query: 363 VPLRAKYIRVMF 374
VP RA++IRV+F
Sbjct: 163 VPDRAQFIRVLF 174
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLL 51
V+YP+++ + + +N + P EK ++N+ INFGPQHPAAHGVL L
Sbjct: 54 VMYPNEKTSDFV---FNTKVFPEEKDVQNITINFGPQHPAAHGVLRL 97
>gi|296229450|ref|XP_002760241.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Callithrix jacchus]
Length = 463
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/295 (65%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR++NHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLMNHIMAVTTHALDIGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRLDELEELLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+++AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+HG+ + ++E
Sbjct: 277 VITAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSHGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIVQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+++ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDRMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPTKETAHWKPPPWNDVDPPKDNIVKNMKLNFGPQHPAAHGVLRLVMELS 102
>gi|397481298|ref|XP_003811885.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 [Pan paniscus]
gi|397481300|ref|XP_003811886.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 [Pan paniscus]
Length = 463
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPAGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|198423297|ref|XP_002122965.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
2 [Ciona intestinalis]
Length = 471
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/287 (64%), Positives = 226/287 (78%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + + FAE TRILNHIM + THALDVGAMTPFFWL EEREKMMEFYER SGARMHA
Sbjct: 173 PRAQWIRVFFAEQTRILNHIMGITTHALDVGAMTPFFWLMEEREKMMEFYERVSGARMHA 232
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV+ D+P+GL+DD+Y + FSAR+DE+E+ML+ENR+W RT DVG+++AE AL
Sbjct: 233 AYVRPGGVSQDLPLGLMDDVYDWAIRFSARVDELEEMLSENRIWRTRTVDVGLITAEQAL 292
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
N+G SGV+LRGSGIKWDLRK QPYD Y+ EFD+PIGT G+ + ++EMRQSLRI+
Sbjct: 293 NWGCSGVVLRGSGIKWDLRKTQPYDAYDQVEFDVPIGTRGDTYDRYLCRVEEMRQSLRII 352
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+Q +NKMP GE++ DD K++ P+RS+MK G+ VP G+TYTAVEAPK
Sbjct: 353 QQCLNKMPEGEIKVDDNKLNPPTRSQMKDSMEAVIHHFKLFTEGFQVPAGSTYTAVEAPK 412
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDGTSKPYRCKIKAPGFAHLA +E + G L D+VA+I
Sbjct: 413 GEFGVYLVSDGTSKPYRCKIKAPGFAHLATIEHVAPGLQLPDVVALI 459
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHR TEKL+EYKTY Q LPYFDRLDYVSMM NEQCYSLA+E+L+ I
Sbjct: 111 GEVVIRADPHIGLLHRATEKLMEYKTYIQGLPYFDRLDYVSMMVNEQCYSLAIERLMGIT 170
Query: 363 VPLRAKYIRVMFT 375
P RA++IRV F
Sbjct: 171 APPRAQWIRVFFA 183
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++ + +NFGPQHPAAHGVL L E+
Sbjct: 83 NKLDTLTLNFGPQHPAAHGVLRLILELA 110
>gi|297662927|ref|XP_002809936.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 [Pongo abelii]
gi|395729512|ref|XP_003775560.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 [Pongo abelii]
gi|115502343|sp|Q0MQG3.1|NDUS2_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|111661934|gb|ABH12180.1| mitochondrial complex I subunit NDUFS2 [Pongo pygmaeus]
Length = 463
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA+L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLASLDKMSKGHMLADVVAII 451
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVEPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|221043702|dbj|BAH13528.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 107 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 165
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 166 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 225
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 226 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 285
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 286 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 345
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 346 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 400
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 52 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 111
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 112 PPPRAQWIRVLF 123
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 6 LYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+YP KE WK WND P + ++N+ +NFGPQHPAAHGVL L E++
Sbjct: 1 MYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELS 51
>gi|260898743|ref|NP_001159631.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 precursor [Homo sapiens]
Length = 457
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELS 102
>gi|115502341|sp|Q0MQG4.1|NDUS2_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|111661932|gb|ABH12179.1| mitochondrial complex I subunit NDUFS2 [Gorilla gorilla]
Length = 463
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPSKETAHWKPPPWNDVDPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|410221796|gb|JAA08117.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410301254|gb|JAA29227.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410348764|gb|JAA40986.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
Length = 457
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|426332419|ref|XP_004027803.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Gorilla gorilla gorilla]
Length = 457
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPSKETAHWKPPPWNDVDPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|115392079|ref|NP_001065294.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Pan troglodytes]
gi|115502342|sp|Q0MQG5.1|NDUS2_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|111661930|gb|ABH12178.1| mitochondrial complex I subunit NDUFS2 [Pan troglodytes]
gi|410221792|gb|JAA08115.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410221794|gb|JAA08116.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410265062|gb|JAA20497.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410301248|gb|JAA29224.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410301250|gb|JAA29225.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410301252|gb|JAA29226.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410348760|gb|JAA40984.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410348762|gb|JAA40985.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
gi|410348766|gb|JAA40987.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Pan troglodytes]
Length = 463
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELS 102
>gi|4758786|ref|NP_004541.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Homo sapiens]
gi|20178314|sp|O75306.2|NDUS2_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|3337443|gb|AAC27453.1| NADH-ubiquinone oxidoreductase NDUFS2 subunit [Homo sapiens]
gi|12652835|gb|AAH00170.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|12655197|gb|AAH01456.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|14250796|gb|AAH08868.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|119573010|gb|EAW52625.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), isoform CRA_a [Homo
sapiens]
gi|119573011|gb|EAW52626.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), isoform CRA_a [Homo
sapiens]
gi|123994823|gb|ABM85013.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) [synthetic construct]
Length = 463
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELS 102
>gi|3540239|gb|AAC34362.1| NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor [Homo
sapiens]
Length = 463
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELS 102
>gi|62896795|dbj|BAD96338.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase) variant [Homo sapiens]
Length = 463
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/295 (65%), Positives = 232/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAH A L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHQAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELS 102
>gi|11466533|ref|NP_044782.1| NADH dehydrogenase subunit 7 (mitochondrion) [Reclinomonas
americana]
gi|6647647|sp|O21270.1|NDUS2_RECAM RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|2258363|gb|AAD11897.1| NADH dehydrogenase subunit 7 (mitochondrion) [Reclinomonas
americana]
Length = 396
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/285 (63%), Positives = 219/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH+MAV THALDVGAMTPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 100 AQYIRVLFCEITRILNHLMAVTTHALDVGAMTPFLWGFEEREKLMEFYERVSGARMHAAY 159
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV+ D+P+GL +DIY F F +R+DE+ED+L+ NR+W QR D+G VSAE+AL++
Sbjct: 160 IRPGGVSQDMPMGLSEDIYKFAKQFGSRIDEIEDVLSSNRIWKQRLVDIGTVSAEEALDW 219
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPYD Y+ EFDIP+GT G+ +I ++EMRQSL+++ Q
Sbjct: 220 GFSGVMLRGSGIAWDLRKTQPYDVYDELEFDIPVGTKGDCYDRYLIRVEEMRQSLKLIMQ 279
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD KIS PSR +MK GY VP G TYTAVEAPKGE
Sbjct: 280 CLNKMPTGVIKVDDKKISPPSRVDMKDSMEALIHHFKLYTEGYSVPIGETYTAVEAPKGE 339
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+SKPYRCKIKAPGF+HL L + KG +AD+V II
Sbjct: 340 FGVYLVSDGSSKPYRCKIKAPGFSHLQGLNFMSKGHMIADVVTII 384
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMM E YSLAVEKLL E
Sbjct: 36 GEVVNRADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEKLLGCE 95
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV+F
Sbjct: 96 VPKRAQYIRVLFC 108
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+++N +NFGPQHPAAHGVL L E+
Sbjct: 8 KKLKNFTMNFGPQHPAAHGVLRLVLELN 35
>gi|330921705|ref|XP_003299535.1| hypothetical protein PTT_10543 [Pyrenophora teres f. teres 0-1]
gi|311326760|gb|EFQ92374.1| hypothetical protein PTT_10543 [Pyrenophora teres f. teres 0-1]
Length = 475
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/279 (62%), Positives = 216/279 (77%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 185 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 244
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+PIGLLDDIY + + F R+DE E+MLT+NR+WI RTK VG+VSA DA+NY FSGVM
Sbjct: 245 SQDLPIGLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGVGVVSAADAINYSFSGVM 304
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 305 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 364
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KI+ P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 365 AGPVKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMGVFLV 424
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHLA +++I +G LAD VAII
Sbjct: 425 SDGSERPYRCKIRAPGFAHLACMDQISRGHLLADAVAII 463
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 62/65 (95%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEY+TY QALPYFDRLDYVSMM NEQC+SLAVEKLLNI++P+RAKY
Sbjct: 122 DPHVGLLHRGTEKLIEYRTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIDIPIRAKY 181
Query: 370 IRVMF 374
IR +F
Sbjct: 182 IRTLF 186
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 87 RKIRHYTVNFGPQHPAAHGVLRLILELN 114
>gi|156541952|ref|XP_001600518.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Nasonia vitripennis]
Length = 478
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 220/279 (78%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F E++R++NH+M++ H LD GA++PFFW+FEEREK+ EF+ERASGARMHA YVRPGGV
Sbjct: 188 MFVELSRLMNHMMSIACHCLDTGALSPFFWVFEEREKIYEFHERASGARMHACYVRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A+D+P+GLLDDI+ F++ FS R+DEVED+LTENR+W QRT +G++SAE+ALNYG SG+M
Sbjct: 248 AVDLPLGLLDDIHDFVAKFSERMDEVEDLLTENRIWKQRTVGIGVLSAEEALNYGCSGMM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
+R GIKWDLRK PYD Y+ +FD+P+ +G+ ++ M EMRQSLRI+EQ +N+MP
Sbjct: 308 IRACGIKWDLRKSMPYDAYDCVDFDVPVAWNGDTYDRYLVRMHEMRQSLRIIEQCLNQMP 367
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GEVR DD KIS P R+EMK GY VPPGATYTAVEAPKGEFGVYLV
Sbjct: 368 AGEVRVDDFKISPPPRAEMKLSMEALIHHFKLFSEGYHVPPGATYTAVEAPKGEFGVYLV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+S+PYR +++APGF HLA L+K+ G LAD+V+++
Sbjct: 428 SDGSSRPYRLRVRAPGFPHLALLKKLAPGLMLADVVSVL 466
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 63/70 (90%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRG+EKL+EYKTYTQALPYFDR DYVS++ NEQC++LAVEKLLNI++PL
Sbjct: 121 VVSADPHIGLLHRGSEKLMEYKTYTQALPYFDRFDYVSVLSNEQCFALAVEKLLNIDIPL 180
Query: 366 RAKYIRVMFT 375
RAKYIR MF
Sbjct: 181 RAKYIRTMFV 190
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 16/65 (24%)
Query: 7 YPDKE----------------ETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLL 50
YPDKE KWK + P K+I+N+ +NFGPQHP+AHG L
Sbjct: 52 YPDKEYADQFIGPTVAPCPEDAPKWKFPPYEQEQPPPVKRIKNVRVNFGPQHPSAHGCLR 111
Query: 51 LFAEI 55
L E+
Sbjct: 112 LVLEL 116
>gi|17555284|ref|NP_498423.1| Protein NDUF-2.2 [Caenorhabditis elegans]
gi|351047528|emb|CCD63209.1| Protein NDUF-2.2 [Caenorhabditis elegans]
Length = 474
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/287 (62%), Positives = 218/287 (75%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LF E+TRI NHIM + THALDVGAMTPFFW+FEEREK+ EF ER SGARMHA
Sbjct: 176 PRAKYIRILFGELTRIQNHIMGITTHALDVGAMTPFFWMFEEREKLFEFSERVSGARMHA 235
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+P+GL+DDIY + F AR+DE+EDMLTENR+W RT D+G+VSA DAL
Sbjct: 236 NYVRPGGVAWDLPVGLMDDIYDWAVKFPARIDELEDMLTENRIWKARTVDIGLVSASDAL 295
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
N+GFSGVM+RGSGIK D+RK +PYD Y + EFD+PIGT G+ + ++EMRQSL IV
Sbjct: 296 NWGFSGVMVRGSGIKQDVRKTEPYDAYADMEFDVPIGTKGDCYDRYLCRVEEMRQSLNIV 355
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +NKMP GE+++DD K+ P R+EMK G+ VPPGATY +EAPK
Sbjct: 356 HQCLNKMPTGEIKSDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPK 415
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLV+DGT KPYRC I+APGFAHLAA+ + S +ADIVA+I
Sbjct: 416 GEFGVYLVADGTGKPYRCFIRAPGFAHLAAIHDVCYMSLIADIVAVI 462
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 60/64 (93%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHR TEKLIE+KTYTQALPYFDRLDYVSMMCNEQ +SLA+EKLL I+VP RAKYI
Sbjct: 122 PHIGLLHRATEKLIEHKTYTQALPYFDRLDYVSMMCNEQAFSLAIEKLLGIDVPPRAKYI 181
Query: 371 RVMF 374
R++F
Sbjct: 182 RILF 185
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + NM++NFGPQHPAAHGVL L ++
Sbjct: 85 EKNLENMILNFGPQHPAAHGVLRLVLKL 112
>gi|189203211|ref|XP_001937941.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187985040|gb|EDU50528.1| NADH dehydrogenase iron-sulfur protein 2, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 475
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 172/279 (61%), Positives = 216/279 (77%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 185 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 244
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+PIGLLDDIY + + F R+DE E+MLT+NR+WI RTK VG+VSA DA+NY FSGVM
Sbjct: 245 SQDLPIGLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGVGVVSAADAINYSFSGVM 304
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 305 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 364
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KI+ P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 365 AGPVKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMGVFLV 424
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHLA +++I +G LAD VAII
Sbjct: 425 SDGSERPYRCKIRAPGFAHLACMDQISRGHLLADAVAII 463
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 62/65 (95%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEY+TY QALPYFDRLDYVSMM NEQC+SLAVEKLLNI++P+RAKY
Sbjct: 122 DPHVGLLHRGTEKLIEYRTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIDIPIRAKY 181
Query: 370 IRVMF 374
IR MF
Sbjct: 182 IRTMF 186
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 87 RKIRHYTVNFGPQHPAAHGVLRLILELN 114
>gi|268553423|ref|XP_002634697.1| C. briggsae CBR-TAG-99 protein [Caenorhabditis briggsae]
Length = 474
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/287 (62%), Positives = 217/287 (75%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LF E+TRI NHIM + THALD+GAMTPFFW+FEEREK+ EF ER SGARMHA
Sbjct: 176 PRAKYIRTLFGELTRIQNHIMGITTHALDIGAMTPFFWMFEEREKLFEFSERVSGARMHA 235
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+PIGL+DDIY + + F AR+DE+EDMLTENR+W RT D+G+VSA DAL
Sbjct: 236 NYVRPGGVAWDLPIGLMDDIYDWATKFPARIDELEDMLTENRIWKARTVDIGLVSAADAL 295
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
N+GFSGVM+RGSGIK D+RK QPYD Y + EFD+PIGT G+ + ++EMRQSL I+
Sbjct: 296 NWGFSGVMVRGSGIKQDVRKTQPYDAYADMEFDVPIGTKGDCYDRYLCRVEEMRQSLNII 355
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +NKMP GE++ DD K+ P R+EMK G+ VPPGATY +EAPK
Sbjct: 356 IQCLNKMPTGEIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPK 415
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLV+DGT KPYRC I+APGFAHLAA+ + S +ADIVA+I
Sbjct: 416 GEFGVYLVADGTGKPYRCFIRAPGFAHLAAIHDVCYMSLIADIVAVI 462
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 59/64 (92%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHR TEKLIE+KTYTQALPYFDRLDYVSMMCNEQ ++LA+EKLL I++P RAKYI
Sbjct: 122 PHIGLLHRATEKLIEHKTYTQALPYFDRLDYVSMMCNEQAFALAIEKLLGIDIPPRAKYI 181
Query: 371 RVMF 374
R +F
Sbjct: 182 RTLF 185
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + NM++NFGPQHPAAHGVL L ++
Sbjct: 85 EKNLENMILNFGPQHPAAHGVLRLVLKL 112
>gi|452001562|gb|EMD94021.1| hypothetical protein COCHEDRAFT_1222624 [Cochliobolus
heterostrophus C5]
Length = 474
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/279 (61%), Positives = 216/279 (77%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY+RPGGV
Sbjct: 184 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ DIP+GLLDDIY + + F R+DE E+MLT+NR+WI RTK VG+V A DA+NY FSGVM
Sbjct: 244 SQDIPLGLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGVGVVPAADAINYSFSGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 304 LRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KI+ P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 364 AGPVKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMGVFLV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHLA +++I +G LAD VAII
Sbjct: 424 SDGSERPYRCKIRAPGFAHLACMDQISRGHLLADAVAII 462
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEY+TY QALPYFDRLDYVSMM NEQCYSLAVEKLLNI++P+RAKY
Sbjct: 121 DPHVGLLHRGTEKLIEYRTYLQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIDIPIRAKY 180
Query: 370 IRVMFT 375
IR MF
Sbjct: 181 IRTMFA 186
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 86 RKIRHYTVNFGPQHPAAHGVLRLILELN 113
>gi|150406473|ref|YP_001315124.1| NADH dehydrogenase subunit 7 [Chlorokybus atmophyticus]
gi|126507710|gb|ABO15107.1| NADH dehydrogenase subunit 7 [Chlorokybus atmophyticus]
Length = 398
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/285 (60%), Positives = 222/285 (77%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITR+LNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 102 AQYIRVLFSEITRLLNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV+ D+PIGL +DIY F FS+R+DE+E+MLT NR+W QR D+G+V+AEDA+N+
Sbjct: 162 IRPGGVSQDLPIGLSEDIYKFAQQFSSRVDEIEEMLTNNRIWKQRLVDIGVVTAEDAMNW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPYD Y+ +FD+P+GT G+ +I ++EMRQS+RI+ Q
Sbjct: 222 GFSGVMLRGSGISWDLRKAQPYDVYDKVDFDVPVGTRGDCYDRYLIRVEEMRQSIRIIMQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
IN+MP G +++DD KI+ PSR +MK G+ VP TYTAVEAPKGE
Sbjct: 282 CINQMPTGMIKSDDRKITPPSRLQMKQSMESLIHHFKLYTEGFSVPSAETYTAVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+ T++PYRCKI+APGFAHL +L+ + K LAD+V II
Sbjct: 342 FGVYLVSNNTNRPYRCKIRAPGFAHLQSLDFMSKNHMLADVVTII 386
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVEKLL E
Sbjct: 38 GEVVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLLGCE 97
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F+
Sbjct: 98 VPLRAQYIRVLFS 110
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+I+N +NFGPQHPAAHGVL L E+
Sbjct: 10 KKIKNFTLNFGPQHPAAHGVLRLVLEMN 37
>gi|169603301|ref|XP_001795072.1| hypothetical protein SNOG_04659 [Phaeosphaeria nodorum SN15]
gi|111067299|gb|EAT88419.1| hypothetical protein SNOG_04659 [Phaeosphaeria nodorum SN15]
Length = 477
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/279 (61%), Positives = 216/279 (77%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 187 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 246
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+PIGLLDDIY + + F R+DE E+MLT+NR+WI RTK VG+VSA DA+NY FSGVM
Sbjct: 247 SQDLPIGLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGVGVVSAADAINYSFSGVM 306
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 307 LRGSGVPWDVRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 366
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KI+ P R+ M KGY VPPG TY+A+EAPKGE GV++V
Sbjct: 367 AGPVKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMGVFVV 426
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHLA +++I +G LAD VAII
Sbjct: 427 SDGSERPYRCKIRAPGFAHLACMDQISRGHLLADAVAII 465
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEY+TY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAKY
Sbjct: 124 DPHVGLLHRGTEKLIEYRTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKY 183
Query: 370 IRVMF 374
IR MF
Sbjct: 184 IRTMF 188
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 89 RKIRHYTVNFGPQHPAAHGVLRLILELN 116
>gi|341879749|gb|EGT35684.1| CBN-NDUF-2.2 protein [Caenorhabditis brenneri]
Length = 474
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/287 (62%), Positives = 217/287 (75%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L AE+TRI NHIM + THALD+GAMTPFFW+FEEREK+ EF ERASGARMHA
Sbjct: 176 PRAKYIRTLMAELTRIQNHIMGITTHALDIGAMTPFFWMFEEREKLFEFSERASGARMHA 235
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+PIGL+DDIY + F AR+DE+EDMLTENR+W RT D+G+VSA DAL
Sbjct: 236 NYVRPGGVAWDLPIGLMDDIYDWAVKFPARIDELEDMLTENRIWKARTIDIGLVSAADAL 295
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GFSGVM+RGSGIK D+RK QPYD Y + EFD+PIGT G+ + ++EMRQSL I+
Sbjct: 296 SWGFSGVMVRGSGIKQDVRKTQPYDAYADMEFDVPIGTKGDCYDRYLCRVEEMRQSLNII 355
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +NKMP GE++ DD K+ P R+EMK G+ VPPGATY +EAPK
Sbjct: 356 VQCLNKMPAGEIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPK 415
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLV+DGT KPYRC I+APGFAHLAA+ + S +ADIVA+I
Sbjct: 416 GEFGVYLVADGTGKPYRCFIRAPGFAHLAAIHDVCYMSLIADIVAVI 462
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 58/65 (89%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHR TEKLIE+KTYTQALPYFDRLDYVSMMCNEQ ++LA+EKLL I++P RAKYI
Sbjct: 122 PHIGLLHRATEKLIEHKTYTQALPYFDRLDYVSMMCNEQAFALAIEKLLGIDIPPRAKYI 181
Query: 371 RVMFT 375
R +
Sbjct: 182 RTLMA 186
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + NM++NFGPQHPAAHGVL L ++
Sbjct: 85 EKSLENMILNFGPQHPAAHGVLRLVLKL 112
>gi|22550346|ref|NP_689365.1| NADH dehydrogenase subunit 7 [Chaetosphaeridium globosum]
gi|22417012|gb|AAM96611.1|AF494279_16 NADH dehydrogenase subunit 7 [Chaetosphaeridium globosum]
Length = 393
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/285 (60%), Positives = 219/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++A+ THA+DVGA+TPF W FEERE++MEFYER SGARMHAAY
Sbjct: 97 AQYIRVMFCEITRILNHLLALTTHAMDVGALTPFLWAFEERERLMEFYERVSGARMHAAY 156
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL +DIY F F++R+DE+E+MLT NR+W QR D+G+V+A+DAL++
Sbjct: 157 IRPGGVAQDLPLGLSEDIYKFTQQFASRIDELEEMLTNNRIWKQRLVDIGVVTAQDALDW 216
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK PYD Y+ +FD+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 217 GFSGVMLRGSGINWDLRKAAPYDVYQQLDFDVPVGTRGDCYDRYCIRVEEMRQSLRIIAQ 276
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N MP G V+ DD KI+ PSRS+MK G VP G+TYTAVEAPKGE
Sbjct: 277 CLNAMPTGMVKVDDRKITPPSRSQMKQSMESLIHHFKLYTEGVSVPEGSTYTAVEAPKGE 336
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT++PYRCKI+APGF HL AL+ + K LAD+V II
Sbjct: 337 FGVFLVSNGTNRPYRCKIRAPGFVHLQALDFMSKHHMLADVVTII 381
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVEKLLN E
Sbjct: 33 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLLNCE 92
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRVMF
Sbjct: 93 VPLRAQYIRVMFC 105
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
KQI+N +NFGPQHPAAHGVL L E+
Sbjct: 5 KQIKNFTLNFGPQHPAAHGVLRLVLEMN 32
>gi|440635103|gb|ELR05022.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
[Geomyces destructans 20631-21]
Length = 475
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/279 (61%), Positives = 213/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 185 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 244
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIPIGLLDDIY + + F+ R+DE E++LT+NR+WI RTK VG+VSA DALN F+GVM
Sbjct: 245 HQDIPIGLLDDIYQWATQFADRIDETEELLTDNRIWIGRTKGVGVVSAADALNLSFTGVM 304
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 305 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 364
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G +R +D K+S P R+ M KGY VPPG TY+A+EAPKGE GVYLV
Sbjct: 365 AGPIRVEDYKVSPPPRAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMGVYLV 424
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 425 SDGSERPYRCKIRAPGFAHLGGFDQVSRGHLLADAVAII 463
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 122 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKW 181
Query: 370 IRVMF 374
IR +F
Sbjct: 182 IRTLF 186
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 87 RKIRHYTVNFGPQHPAAHGVLRLILELN 114
>gi|452979633|gb|EME79395.1| hypothetical protein MYCFIDRAFT_167272 [Pseudocercospora fijiensis
CIRAD86]
Length = 491
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/285 (61%), Positives = 216/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 195 AKWIRTMFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 254
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV+ DIP+GLLDDIY + + F R+DE E+MLT+NR+WI RTK +G+V A DALN
Sbjct: 255 VRPGGVSQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGIGVVPAADALNM 314
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVMLRGSGI WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 315 SFSGVMLRGSGIPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQ 374
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+NKMP G V+ +D KIS P R+ M KGY VPPG TY+A+EAPKGE
Sbjct: 375 CLNKMPAGPVKFEDYKISPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGE 434
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVY+VSDG+ +PYRCKI+APGFAHL+ ++I +G LAD VAII
Sbjct: 435 MGVYVVSDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAII 479
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 61/66 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 138 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 197
Query: 370 IRVMFT 375
IR MF
Sbjct: 198 IRTMFA 203
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 25 VPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
P E++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 99 TPEERKIRHYTVNFGPQHPAAHGVLRLILELN 130
>gi|406866168|gb|EKD19208.1| NADH dehydrogenase I, D subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 476
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/279 (61%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNH+M+V +H++DVGA+TPF W FEEREK+MEFYER SGAR+HAAY+RPGGV
Sbjct: 186 LFAEITRILNHLMSVLSHSMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGV 245
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + FS R+DE E++LT+NR+WI RT+ +G+VSA DALNY FSGVM
Sbjct: 246 HQDIPVGLLDDIYQWATQFSDRIDETEELLTDNRIWIGRTRGIGVVSAADALNYSFSGVM 305
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 306 LRGSGVPWDVRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 365
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D K+S P R+ M KGY VPPG TY+A+EAPKGE GV++V
Sbjct: 366 AGPVRVEDYKVSPPPRAAMKENMEALIHHFLLFTKGYSVPPGETYSAIEAPKGEMGVFVV 425
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 426 SDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAII 464
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 61/66 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 123 DPHVGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 182
Query: 370 IRVMFT 375
IR +F
Sbjct: 183 IRTLFA 188
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 19 NWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
N D ++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 78 NLPDGEAVENRKIRHYTVNFGPQHPAAHGVLRLILELN 115
>gi|308498626|ref|XP_003111499.1| CRE-NDUF-2.2 protein [Caenorhabditis remanei]
gi|308239408|gb|EFO83360.1| CRE-NDUF-2.2 protein [Caenorhabditis remanei]
Length = 487
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/287 (62%), Positives = 216/287 (75%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LF E+TRI NHIM + THALD+GAMTPFFW+FEEREK+ EF ER SGARMHA
Sbjct: 189 PRAKYIRTLFGELTRIQNHIMGITTHALDIGAMTPFFWMFEEREKLFEFSERVSGARMHA 248
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+PIGL+DDIY + F AR+DE+EDMLTENR+W RT D+G+VSA DAL
Sbjct: 249 NYVRPGGVAWDLPIGLMDDIYDWAVKFPARIDELEDMLTENRIWKARTIDIGLVSAADAL 308
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
N+GFSGVM+RGSGIK D+RK +PYD Y + EFD+PIGT G+ + ++EMRQSL IV
Sbjct: 309 NWGFSGVMVRGSGIKQDVRKTEPYDAYADMEFDVPIGTKGDCYDRYLCRVEEMRQSLNIV 368
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +N+MP GE++ DD K+ P R EMK G+ VPPGATY +EAPK
Sbjct: 369 HQCLNRMPTGEIKVDDHKVVPPKRGEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPK 428
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLV+DGT KPYRC I+APGFAHLAA++ + S +ADIVA+I
Sbjct: 429 GEFGVYLVADGTGKPYRCFIRAPGFAHLAAIQDVCYMSLIADIVAVI 475
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 59/77 (76%), Gaps = 13/77 (16%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQ-------------ALPYFDRLDYVSMMCNEQCYSLAVEK 357
PHIGLLHR TEKLIE+KTYTQ ALPYFDRLDYVSMMCNEQ ++LA+EK
Sbjct: 122 PHIGLLHRATEKLIEHKTYTQVKEINPFLGYLKIALPYFDRLDYVSMMCNEQAFALAIEK 181
Query: 358 LLNIEVPLRAKYIRVMF 374
LL I++P RAKYIR +F
Sbjct: 182 LLGIDIPPRAKYIRTLF 198
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + NM++NFGPQHPAAHGVL L ++
Sbjct: 85 EKSLENMILNFGPQHPAAHGVLRLVLKL 112
>gi|313217537|emb|CBY38614.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/285 (62%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +FAEITRILNH + VG ALD+GAMTPFFWLFEEREK+ EFYER GARMHAAY
Sbjct: 180 AKYIRTMFAEITRILNHTVFVGCGALDLGAMTPFFWLFEEREKLYEFYERVCGARMHAAY 239
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV LD+PIGL DDIY + FS+RLDEVE+MLTENR+W R DVGIVS + A +
Sbjct: 240 VRPGGVNLDLPIGLCDDIYDWAKRFSSRLDEVEEMLTENRVWRARNVDVGIVSYDSAQEW 299
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQ 219
G SG MLRGSGIKWD+RKV PYD Y+ EFD+PIGT G+ M+EMR+S+RI+ Q
Sbjct: 300 GMSGCMLRGSGIKWDIRKVAPYDAYDLVEFDVPIGTRGDCFDRYLCRMEEMRESIRIIHQ 359
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G+++ DD K + P+R MK GY VPPGATYTAVEAPKGE
Sbjct: 360 CLNQMPEGDIKADDRKFTPPNRLSMKNDMEAVIHHFKFWTEGYQVPPGATYTAVEAPKGE 419
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGTS+PYRCKIKAPGFAHL A++ + G+ L DI I+
Sbjct: 420 FGVYLVSDGTSRPYRCKIKAPGFAHLGAIDHVATGNNLPDICGIV 464
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 61/70 (87%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDY SMM NEQC+SLAVEKL NI+VPL
Sbjct: 119 VMRCDPHIGLLHRGTEKLIEYKTYNQALPYFDRLDYCSMMINEQCFSLAVEKLCNIDVPL 178
Query: 366 RAKYIRVMFT 375
RAKYIR MF
Sbjct: 179 RAKYIRTMFA 188
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K++ M +NFGPQHPAAHGVL L E+
Sbjct: 88 KKLETMQLNFGPQHPAAHGVLRLILEL 114
>gi|74325199|ref|YP_316619.1| NADH dehydrogenase subunit 7 [Thalassiosira pseudonana]
gi|74100265|gb|AAZ99426.1| NADH dehydrogenase subunit 7 [Thalassiosira pseudonana]
Length = 398
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/285 (62%), Positives = 215/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 102 AQYIRVLFAEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGG+ +DIP GLLDDIY FI F+ RL E+EDMLTENR+W QR D+G+V+A+DA +
Sbjct: 162 FRPGGLQVDIPKGLLDDIYMFIEQFTLRLTEMEDMLTENRIWKQRLVDIGVVTAKDACQW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ YE EFDIP+GT+G+ +I + EM++SL+I+EQ
Sbjct: 222 GFSGVMLRGSGINWDLRKSQPYEVYEKLEFDIPVGTNGDCYDRYLIRVFEMKESLKIIEQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N MP G V+T+D KIS P+R EMK G +P TY EAPKGE
Sbjct: 282 CLNLMPAGYVKTNDFKISPPTRVEMKQSMEALIHHFKMYTQGVIIPSNETYIGTEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+SD T++PYRCKIKAPGF HL AL+ + KG +AD+V II
Sbjct: 342 FGVYLISDNTNRPYRCKIKAPGFNHLQALDFMSKGHLIADVVTII 386
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMM E Y LA+EKL N +
Sbjct: 38 GEIVNRADPHIGLLHRGTEKLIEYKNYVQALPYFDRLDYVSMMAQEHSYCLAIEKLFNCK 97
Query: 363 VPLRAKYIRVMFT 375
+P RA+YIRV+F
Sbjct: 98 IPERAQYIRVLFA 110
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 35 VINFGPQHPAAHGVLLLFAEIT 56
INFGPQHPAAHGVL L E+
Sbjct: 16 TINFGPQHPAAHGVLRLVLELN 37
>gi|224925492|gb|ACN69494.1| NADH-ubiquinone oxidoreductase [Paecilomyces sp. J18]
Length = 474
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/279 (61%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 184 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ DIP+GLLDDIY + + FS R+DE E++LT+NR+W RT+ VG+VSA DALN F+GVM
Sbjct: 244 SQDIPLGLLDDIYQWATQFSDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 304 LRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P R+ M KGY VPPG TYTA+EAPKGE GVY+V
Sbjct: 364 PGPVKVEDYKISPPPRAAMKENMEALIHHFLLFAKGYSVPPGETYTAIEAPKGEMGVYIV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 424 SDGSERPYRCKIRAPGFAHLGGFDQVARGHLLADAVAII 462
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/66 (87%), Positives = 60/66 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQ YSLAVEKLLNIEVP RAK+
Sbjct: 121 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQVYSLAVEKLLNIEVPERAKW 180
Query: 370 IRVMFT 375
IR MF
Sbjct: 181 IRTMFA 186
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 86 RKIRHYTVNFGPQHPAAHGVLRLILELN 113
>gi|451849745|gb|EMD63048.1| hypothetical protein COCSADRAFT_182335 [Cochliobolus sativus
ND90Pr]
Length = 474
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 215/279 (77%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY+RPGGV
Sbjct: 184 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ DIP+GLLDDIY + + F R+DE E+MLT+NR+WI RTK +G+V A DA+NY FSGVM
Sbjct: 244 SQDIPLGLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGIGVVPAADAINYSFSGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 304 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G ++ +D KI+ P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 364 AGPIKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGEMGVFLV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHLA +++I +G LAD VAII
Sbjct: 424 SDGSERPYRCKIRAPGFAHLACMDQISRGHLLADAVAII 462
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 62/65 (95%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEY+TY QALPYFDRLDYVSMM NEQCYSLAVEKLLNI++P+RAKY
Sbjct: 121 DPHVGLLHRGTEKLIEYRTYLQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIDIPIRAKY 180
Query: 370 IRVMF 374
IR MF
Sbjct: 181 IRTMF 185
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 86 RKIRHYTVNFGPQHPAAHGVLRLILELN 113
>gi|156061625|ref|XP_001596735.1| NADH dehydrogenase I, D subunit [Sclerotinia sclerotiorum 1980]
gi|154700359|gb|EDO00098.1| NADH dehydrogenase I, D subunit [Sclerotinia sclerotiorum 1980
UF-70]
Length = 473
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/279 (62%), Positives = 213/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 183 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 242
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E++LT+NR+WI RTK VG+VSA DALN GF+GVM
Sbjct: 243 HQDIPVGLLDDIYQWATQFGDRIDETEELLTDNRIWIGRTKGVGVVSAADALNLGFTGVM 302
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 303 LRGSGVPWDVRKSQPYDAYGEVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 362
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 363 PGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMGVYVV 422
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL+ ++I +G LAD VAII
Sbjct: 423 SDGSERPYRCKIRAPGFAHLSGFDQISRGHLLADAVAII 461
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKW 179
Query: 370 IRVMF 374
IR +F
Sbjct: 180 IRTLF 184
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 84 KRKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|313238400|emb|CBY13477.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/285 (62%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +FAEITRILNH + VG ALD+GAMTPFFWLFEEREK+ EFYER GARMHAAY
Sbjct: 180 AKYIRTMFAEITRILNHTVFVGCGALDLGAMTPFFWLFEEREKLYEFYERVCGARMHAAY 239
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV LD+PIGL DDIY + FS+RLDEVE+MLTENR+W R DVGIVS + A +
Sbjct: 240 IRPGGVNLDLPIGLCDDIYDWAKRFSSRLDEVEEMLTENRVWRARNVDVGIVSYDSAQEW 299
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQ 219
G SG MLRGSGIKWD+RKV PYD Y+ EFD+PIGT G+ M+EMR+S+RI+ Q
Sbjct: 300 GMSGCMLRGSGIKWDIRKVAPYDAYDLVEFDVPIGTRGDCFDRYLCRMEEMRESIRIIHQ 359
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G+++ DD K + P+R MK GY VPPGATYTAVEAPKGE
Sbjct: 360 CLNQMPEGDIKADDRKFTPPNRLSMKNDMEAVIHHFKFWTEGYQVPPGATYTAVEAPKGE 419
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGTS+PYRCKIKAPGFAHL A++ + G+ L DI I+
Sbjct: 420 FGVYLVSDGTSRPYRCKIKAPGFAHLGAIDHVATGNNLPDICGIV 464
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/70 (84%), Positives = 61/70 (87%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDY SMM NEQC+SLAVEKL NI+VPL
Sbjct: 119 VMRCDPHIGLLHRGTEKLIEYKTYNQALPYFDRLDYCSMMINEQCFSLAVEKLCNIDVPL 178
Query: 366 RAKYIRVMFT 375
RAKYIR MF
Sbjct: 179 RAKYIRTMFA 188
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K++ M +NFGPQHPAAHGVL L E+
Sbjct: 88 KKLETMQLNFGPQHPAAHGVLRLILEL 114
>gi|452836264|gb|EME38208.1| hypothetical protein DOTSEDRAFT_75700 [Dothistroma septosporum
NZE10]
Length = 486
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 171/279 (61%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 196 LFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 255
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E+MLT+NR+WI RTK VG+V+A DALN FSGVM
Sbjct: 256 SQDLPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGVGVVNAADALNMSFSGVM 315
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 316 LRGSGIPWDVRKSQPYDAYDQVEFDVPVGQNGDCYDRYLCRMEEFRQSLRIMHQCLNKMP 375
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G ++ +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 376 AGPIKVEDYKISPPPRAAMKENMEALIHHFLLYSKGYTVPPGETYSAIEAPKGEMGVYVV 435
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHLA +++ +G LAD VAII
Sbjct: 436 SDGSERPYRCKIRAPGFAHLACFDQVSRGHLLADAVAII 474
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIEVP RAK+
Sbjct: 133 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEVPERAKW 192
Query: 370 IRVMF 374
IR +F
Sbjct: 193 IRTLF 197
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 8 PDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
PDK T + N D P E++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 80 PDK--TAMNMPN-EDAATPDERKIRHYTVNFGPQHPAAHGVLRLILELN 125
>gi|295663795|ref|XP_002792450.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279120|gb|EEH34686.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Paracoccidioides sp.
'lutzii' Pb01]
Length = 479
Score = 369 bits (948), Expect = e-99, Method: Compositional matrix adjust.
Identities = 171/279 (61%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY+RPGGV
Sbjct: 189 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGV 248
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E++LTENR+W RT+ +G+VSA +ALNY FSGVM
Sbjct: 249 HQDIPLGLLDDIYQWATQFGDRIDETEELLTENRIWKARTQGIGVVSAAEALNYSFSGVM 308
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 309 LRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 368
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 369 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLV 428
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL+ ++I +G LAD VAII
Sbjct: 429 SDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAII 467
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 61/66 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 126 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 185
Query: 370 IRVMFT 375
IR MF
Sbjct: 186 IRTMFA 191
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 91 RKIRHYTVNFGPQHPAAHGVLRLILELN 118
>gi|225562811|gb|EEH11090.1| NADH dehydrogenase I [Ajellomyces capsulatus G186AR]
Length = 479
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/279 (61%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 189 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 248
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + FS R+DE E++LT+NR+W RT+ VG+V+A +ALNYGF+GVM
Sbjct: 249 HQDIPLGLLDDIYQWATQFSDRIDETEELLTDNRIWKARTQGVGVVTAAEALNYGFTGVM 308
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 309 LRGSGVPWDIRKSQPYDAYGEVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 368
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 369 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVYVV 428
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL+ ++I +G LAD VAII
Sbjct: 429 SDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAII 467
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 126 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKW 185
Query: 370 IRVMF 374
IR +F
Sbjct: 186 IRTLF 190
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 91 RKIRHYTVNFGPQHPAAHGVLRLILELN 118
>gi|308487975|ref|XP_003106182.1| CRE-GAS-1 protein [Caenorhabditis remanei]
gi|308254172|gb|EFO98124.1| CRE-GAS-1 protein [Caenorhabditis remanei]
Length = 482
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 178/287 (62%), Positives = 214/287 (74%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L E+TRI NHIM + THALDVGAMTPFFW+FEEREK+ EF ER SGARMHA
Sbjct: 184 PRAKYIRTLMGELTRIQNHIMGITTHALDVGAMTPFFWMFEEREKLFEFSERVSGARMHA 243
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+PIGL+DDIY + F R+DE+EDMLTENR+W RT D+G+VSA DAL
Sbjct: 244 NYVRPGGVAWDMPIGLMDDIYDWAIKFPERIDELEDMLTENRIWKARTIDIGLVSAADAL 303
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
N+GF+GVM+RGSGIK D+RK QPYD Y+ EFD+PIGT G+ + ++EMRQSL IV
Sbjct: 304 NWGFTGVMVRGSGIKQDVRKTQPYDAYDQVEFDVPIGTKGDCYDRYLCRIEEMRQSLNIV 363
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +NKMP GE++ DD K+ P R+EMK G+ VPPGATY +EAPK
Sbjct: 364 HQCLNKMPAGEIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPK 423
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLV+DGT KPYRC I+APGFAHLAA+ + S +ADIVA+I
Sbjct: 424 GEFGVYLVADGTGKPYRCFIRAPGFAHLAAVHDVCYMSLIADIVAVI 470
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 58/63 (92%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHR TEKLIE+KTYTQALPYFDRLDYVSMMCNEQ +SLAVEKLL I++P RAKYI
Sbjct: 130 PHIGLLHRATEKLIEHKTYTQALPYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPPRAKYI 189
Query: 371 RVM 373
R +
Sbjct: 190 RTL 192
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + NM++NFGPQHPAAHGVL L ++
Sbjct: 93 EKNLENMILNFGPQHPAAHGVLRLVLKL 120
>gi|240279627|gb|EER43132.1| NADH dehydrogenase I [Ajellomyces capsulatus H143]
gi|325092756|gb|EGC46066.1| NADH dehydrogenase I [Ajellomyces capsulatus H88]
Length = 479
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/279 (61%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 189 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 248
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + FS R+DE E++LT+NR+W RT+ VG+V+A +ALNYGF+GVM
Sbjct: 249 HQDIPLGLLDDIYQWATQFSDRIDETEELLTDNRIWKARTQGVGVVTAAEALNYGFTGVM 308
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 309 LRGSGVPWDIRKSQPYDAYGEVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 368
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 369 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVYVV 428
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL+ ++I +G LAD VAII
Sbjct: 429 SDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAII 467
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 126 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKW 185
Query: 370 IRVMF 374
IR +F
Sbjct: 186 IRTLF 190
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 91 RKIRHYTVNFGPQHPAAHGVLRLILELN 118
>gi|154279940|ref|XP_001540783.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Ajellomyces capsulatus NAm1]
gi|150412726|gb|EDN08113.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Ajellomyces capsulatus NAm1]
Length = 479
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/279 (61%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 189 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 248
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + FS R+DE E++LT+NR+W RT+ VG+V+A +ALNYGF+GVM
Sbjct: 249 HQDIPLGLLDDIYQWATQFSDRIDETEELLTDNRIWKARTQGVGVVTAAEALNYGFTGVM 308
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 309 LRGSGVPWDIRKSQPYDAYGEVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 368
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 369 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVYVV 428
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL+ ++I +G LAD VAII
Sbjct: 429 SDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAII 467
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 126 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKW 185
Query: 370 IRVMF 374
IR +F
Sbjct: 186 IRTLF 190
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 91 RKIRHYTVNFGPQHPAAHGVLRLILELN 118
>gi|396471379|ref|XP_003838858.1| similar to NADH-ubiquinone oxidoreductase 49 kDa subunit
[Leptosphaeria maculans JN3]
gi|312215427|emb|CBX95379.1| similar to NADH-ubiquinone oxidoreductase 49 kDa subunit
[Leptosphaeria maculans JN3]
Length = 476
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 216/279 (77%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 186 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 245
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E+MLT+NR+W+ RTK +G+VSA DA+NY F+GVM
Sbjct: 246 SQDLPLGLLDDIYQWATQFGDRIDETEEMLTDNRIWLGRTKGIGVVSAADAINYSFTGVM 305
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 306 LRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 365
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KI+ P R+ M KGY VPPG TYT +EAPKGE GV+LV
Sbjct: 366 AGPVKVEDYKIAPPPRAAMKENMEALIHHFLLYSKGYNVPPGETYTCIEAPKGEMGVFLV 425
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL+ +++I +G +AD VAII
Sbjct: 426 SDGSERPYRCKIRAPGFAHLSCMDQISRGHLIADAVAII 464
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEY+TY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P+RAKY
Sbjct: 123 DPHVGLLHRGTEKLIEYRTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPIRAKY 182
Query: 370 IRVMFT 375
IR MF
Sbjct: 183 IRTMFA 188
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 88 RKIRHYTVNFGPQHPAAHGVLRLILELN 115
>gi|313223128|emb|CBY43377.1| unnamed protein product [Oikopleura dioica]
Length = 349
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 178/285 (62%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +FAEITRILNH + VG ALD+GAMTPFFWLFEEREK+ EFYER GARMHAAY
Sbjct: 53 AKYIRTMFAEITRILNHTVFVGCGALDLGAMTPFFWLFEEREKLYEFYERVCGARMHAAY 112
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV LD+PIGL DDIY + FS+RLDEVE+MLTENR+W R DVGIVS + A +
Sbjct: 113 IRPGGVNLDLPIGLCDDIYDWAKRFSSRLDEVEEMLTENRVWRARNVDVGIVSYDSAQEW 172
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQ 219
G SG MLRGSGIKWD+RKV PYD Y+ EFD+PIGT G+ M+EMR+S+RI+ Q
Sbjct: 173 GMSGCMLRGSGIKWDIRKVAPYDAYDLVEFDVPIGTRGDCFDRYLCRMEEMRESIRIIHQ 232
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G+++ DD K + P+R MK GY VPPGATYTAVEAPKGE
Sbjct: 233 CLNQMPEGDIKADDRKFTPPNRLSMKNDMEAVIHHFKFWTEGYQVPPGATYTAVEAPKGE 292
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGTS+PYRCKIKAPGFAHL A++ + G+ L DI I+
Sbjct: 293 FGVYLVSDGTSRPYRCKIKAPGFAHLGAIDHVATGNNLPDICGIV 337
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/61 (86%), Positives = 55/61 (90%)
Query: 315 LLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMF 374
LLHRGTEKLIEYKTY QALPYFDRLDY SMM NEQC+SLAVEKL NI+VPLRAKYIR MF
Sbjct: 1 LLHRGTEKLIEYKTYNQALPYFDRLDYCSMMINEQCFSLAVEKLCNIDVPLRAKYIRTMF 60
Query: 375 T 375
Sbjct: 61 A 61
>gi|119189171|ref|XP_001245192.1| hypothetical protein CIMG_04633 [Coccidioides immitis RS]
gi|303323291|ref|XP_003071637.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240111339|gb|EER29492.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|320035277|gb|EFW17219.1| NADH dehydrogenase subunit D [Coccidioides posadasii str. Silveira]
gi|392868090|gb|EAS33832.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
[Coccidioides immitis RS]
Length = 471
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 213/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 181 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 240
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E++LT+NR+W RT+ +G+VSA DALN+GF+GVM
Sbjct: 241 HQDIPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGIGVVSAADALNFGFTGVM 300
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 301 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 360
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KI+ P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 361 AGPVRVEDYKINPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVYIV 420
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 421 SDGSERPYRCKIRAPGFAHLGCFDQISRGHLLADAVAII 459
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQCYSLAVEKLLNIE+P RAK+
Sbjct: 118 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKW 177
Query: 370 IRVMF 374
IR +F
Sbjct: 178 IRTLF 182
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 83 RKIRHYTVNFGPQHPAAHGVLRLILELN 110
>gi|452822922|gb|EME29937.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Galdieria
sulphuraria]
Length = 490
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH++A+ THA+D+GAM+PF W FEEREK+MEFYERASGAR+H+AYVRPGGV
Sbjct: 200 LFGEITRLLNHLLAITTHAMDIGAMSPFLWAFEEREKLMEFYERASGARLHSAYVRPGGV 259
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GL DDIY F F AR+DE+E+MLT NR+W QRT D+GIV+A+DALN+GFSG M
Sbjct: 260 QYDIPLGLSDDIYRFCEQFPARVDEIEEMLTANRIWKQRTVDIGIVTAKDALNFGFSGPM 319
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WDLRK QPYD Y+ F IP+GTHG+ + ++EMRQS+ I+ Q +N+MP
Sbjct: 320 LRGSGIAWDLRKSQPYDAYDEVNFTIPVGTHGDSYDRYLCRIEEMRQSVAIIVQCLNQMP 379
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++ DD KIS PSR+ MK GY VP G TY AVEAPKGEFGVYL+
Sbjct: 380 EGEIKVDDRKISPPSRANMKQSMESLIHHFKLYSEGYAVPAGETYRAVEAPKGEFGVYLI 439
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
++GT++PYRC+I+ PGF HL+AL + +G +AD+V +I
Sbjct: 440 ANGTNRPYRCRIRPPGFYHLSALNHMCQGHMVADVVTMI 478
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 62/72 (86%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKT+ QALPYFDRLDYVSMM EQCYSLAVEKLL IE
Sbjct: 130 GELVKRADPHIGLLHRGTEKLIEYKTFLQALPYFDRLDYVSMMAQEQCYSLAVEKLLKIE 189
Query: 363 VPLRAKYIRVMF 374
VP RAKYIR +F
Sbjct: 190 VPRRAKYIRTLF 201
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 26 PVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
PVE +N +NFGPQHP+AHGVL L E+
Sbjct: 101 PVE--FKNFSLNFGPQHPSAHGVLRLVLEL 128
>gi|258576269|ref|XP_002542316.1| NADH dehydrogenase (quinone), D subunit [Uncinocarpus reesii 1704]
gi|237902582|gb|EEP76983.1| NADH dehydrogenase (quinone), D subunit [Uncinocarpus reesii 1704]
Length = 470
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 180 LFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 239
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
D+P+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+VSA DALN+GF+GVM
Sbjct: 240 HQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNFGFTGVM 299
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 300 LRGSGIPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 359
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KI+ P R+ M KGY VPPG TY+A+EAPKGE GV++V
Sbjct: 360 AGPVRVEDYKINPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFVV 419
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHLA ++I +G LAD VAII
Sbjct: 420 SDGSERPYRCKIRAPGFAHLACFDQISRGHLLADAVAII 458
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 117 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 176
Query: 370 IRVMF 374
IR +F
Sbjct: 177 IRTLF 181
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 82 RKIRHYTVNFGPQHPAAHGVLRLILELN 109
>gi|453085896|gb|EMF13939.1| NADH dehydrogenase I, D subunit [Mycosphaerella populorum SO2202]
Length = 482
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 216/279 (77%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 192 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 251
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E+MLT+NR+W+ RTK VG+VSA+DAL+ FSGVM
Sbjct: 252 SQDLPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWLGRTKGVGVVSAKDALDMSFSGVM 311
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 312 LRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 371
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G ++ +D KI+ P R+ M KGY VPPG TY+A+EAPKGE GV++V
Sbjct: 372 AGPIKVEDYKIAPPPRAAMKENMEALIHHFLLYSKGYTVPPGETYSAIEAPKGEMGVFVV 431
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHLA +++ +G LAD VAII
Sbjct: 432 SDGSERPYRCKIRAPGFAHLACFDQVSRGHLLADAVAII 470
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 61/66 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 129 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 188
Query: 370 IRVMFT 375
IR MF
Sbjct: 189 IRTMFA 194
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 26 PVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
P E++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 91 PDERKIRHYTVNFGPQHPAAHGVLRLILELN 121
>gi|268581941|ref|XP_002645954.1| C. briggsae CBR-GAS-1 protein [Caenorhabditis briggsae]
Length = 482
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 177/287 (61%), Positives = 214/287 (74%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L E+TRI NHIM + THALDVGAMTPFFW+FEEREK+ EF ER SGARMHA
Sbjct: 184 PRAKYIRTLMGELTRIQNHIMGITTHALDVGAMTPFFWMFEEREKLFEFSERVSGARMHA 243
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+PIGL+DDIY + F R+DE+EDMLTENR+W RT D+G+VSA DAL
Sbjct: 244 NYVRPGGVAWDMPIGLMDDIYDWAIKFPERIDELEDMLTENRIWKARTIDIGLVSAADAL 303
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
N+GF+GVM+RGSGIK D+RK QPYD Y+ EFD+PIGT G+ + ++EMRQSL I+
Sbjct: 304 NWGFTGVMVRGSGIKQDVRKTQPYDAYDQVEFDVPIGTKGDCYDRYLCRVEEMRQSLNII 363
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +NKMP GE++ DD K+ P R+EMK G+ VPPGATY +EAPK
Sbjct: 364 HQCLNKMPTGEIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPK 423
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLV+DGT KPYRC I+APGFAHLAA+ + S +ADIVA+I
Sbjct: 424 GEFGVYLVADGTGKPYRCFIRAPGFAHLAAIHDVCYMSLIADIVAVI 470
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 58/63 (92%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHR TEKLIE+KTYTQALPYFDRLDYVSMMCNEQ +SLAVEKLL I++P RAKYI
Sbjct: 130 PHIGLLHRATEKLIEHKTYTQALPYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPPRAKYI 189
Query: 371 RVM 373
R +
Sbjct: 190 RTL 192
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + NM++NFGPQHPAAHGVL L ++
Sbjct: 93 EKNLENMILNFGPQHPAAHGVLRLVLKL 120
>gi|11497462|ref|NP_042252.1| NADH dehydrogenase (ubiquinone), subunit 7 [Prototheca wickerhamii]
gi|6647672|sp|Q37619.1|NDUS2_PROWI RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|467853|gb|AAD12640.1| NADH dehydrogenase (ubiquinone), subunit 7 [Prototheca wickerhamii]
Length = 400
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 175/285 (61%), Positives = 219/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++AV HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 104 AQYIRVLFSEITRILNHLLAVTCHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAY 163
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVALD+P+GL +DIY F F++R+DE+E+MLT NR+W QR DVG+VSAE AL++
Sbjct: 164 IRPGGVALDLPLGLCEDIYKFSKQFASRIDEIEEMLTSNRIWKQRLVDVGVVSAEQALDW 223
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGV+LRGSGI WDLRK QPY+ Y+ +F+IP+GT G+ +I ++EMR+SLRIV Q
Sbjct: 224 SFSGVLLRGSGIAWDLRKTQPYEVYDRMKFNIPVGTRGDCYDRYLIRVQEMRESLRIVMQ 283
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
IN+M G +R DD KI+ P+R +MK G+ VP G TYTAVEAPKGE
Sbjct: 284 TINEMSKGIIRLDDRKITPPTRDQMKQSMESLIHHFKFYTGGFVVPAGETYTAVEAPKGE 343
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GTSKPYRCKI+APGFAHL L+ + + LAD+V II
Sbjct: 344 FGVYLVSNGTSKPYRCKIRAPGFAHLQGLDFMARNHMLADVVTII 388
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 64/75 (85%), Gaps = 2/75 (2%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI- 361
++V DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMMC E YSLAVEKLLNI
Sbjct: 38 GEVVQRSDPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMCQEHAYSLAVEKLLNIS 97
Query: 362 -EVPLRAKYIRVMFT 375
++PLRA+YIRV+F+
Sbjct: 98 KDIPLRAQYIRVLFS 112
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEIT 56
+N INFGPQHPAAHGVL L E+
Sbjct: 13 KNFTINFGPQHPAAHGVLRLVLEMN 37
>gi|341884803|gb|EGT40738.1| CBN-GAS-1 protein [Caenorhabditis brenneri]
Length = 384
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 177/287 (61%), Positives = 214/287 (74%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L E+TRI NHIM + THALDVGAMTPFFW+FEEREK+ EF ER SGARMHA
Sbjct: 86 PRAKYIRTLMGELTRIQNHIMGITTHALDVGAMTPFFWMFEEREKLFEFSERVSGARMHA 145
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+PIGL+DDIY + F R+DE+EDMLTENR+W RT D+G+VSA DAL
Sbjct: 146 NYVRPGGVAWDMPIGLMDDIYDWAIKFPERIDELEDMLTENRIWKARTIDIGLVSAADAL 205
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
N+GF+GVM+RGSGIK D+RK QPYD Y+ EFD+PIGT G+ + ++EMRQSL IV
Sbjct: 206 NWGFTGVMVRGSGIKQDVRKTQPYDAYDQVEFDVPIGTKGDCYDRYLCRIEEMRQSLNIV 265
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +NKMP GE++ DD K+ P R+EMK G+ VPPGA+Y +EAPK
Sbjct: 266 HQCLNKMPAGEIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGASYVPIEAPK 325
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLV+DGT KPYRC I+APGFAHLAA+ + S +ADIVA+I
Sbjct: 326 GEFGVYLVADGTGKPYRCYIRAPGFAHLAAIHDVCYMSLIADIVAVI 372
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 58/63 (92%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHR TEKLIE+KTYTQALPYFDRLDYVSMMCNEQ +SLAVEKLL I++P RAKYI
Sbjct: 32 PHIGLLHRATEKLIEHKTYTQALPYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPPRAKYI 91
Query: 371 RVM 373
R +
Sbjct: 92 RTL 94
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 34 MVINFGPQHPAAHGVLLLFAEI 55
M++NFGPQHPAAHGVL L ++
Sbjct: 1 MILNFGPQHPAAHGVLRLVLKL 22
>gi|226287321|gb|EEH42834.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Paracoccidioides
brasiliensis Pb18]
Length = 479
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 213/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY+RPGGV
Sbjct: 189 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGV 248
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E++LTENR+W RT+ +G+VSA +ALNY FSGVM
Sbjct: 249 HQDIPLGLLDDIYQWATQFGDRIDETEELLTENRIWKARTQGIGVVSAAEALNYSFSGVM 308
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 309 LRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 368
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 369 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLV 428
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL+ ++I +G LAD VAII
Sbjct: 429 SDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAII 467
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 126 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 185
Query: 370 IRVMF 374
IR MF
Sbjct: 186 IRTMF 190
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 91 RKIRHYTVNFGPQHPAAHGVLRLILELN 118
>gi|407929548|gb|EKG22365.1| NADH-quinone oxidoreductase subunit D [Macrophomina phaseolina MS6]
Length = 471
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 213/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 181 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 240
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E++LT+NR+WI RTK +G+VSA DALNY F+GVM
Sbjct: 241 SQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWIGRTKGIGVVSAADALNYSFTGVM 300
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N MP
Sbjct: 301 LRGSGVPWDIRKSQPYDAYDKVEFDVPVGQNGDCYDRYLCRMEEFRQSLRIIHQCLNDMP 360
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KI+ P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 361 AGPVKVEDYKIAPPPRAAMKENMEALIHHFLLYSKGYSVPPGETYSAIEAPKGEMGVFLV 420
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 421 SDGSERPYRCKIRAPGFAHLGCFDQISRGHLLADAVAII 459
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEY+TY QALPYFDRLDYVSMM NEQCYSLAVEKLLNIE+P RAKY
Sbjct: 118 DPHVGLLHRGTEKLIEYRTYLQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKY 177
Query: 370 IRVMF 374
IR MF
Sbjct: 178 IRTMF 182
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 83 RKIRHYTVNFGPQHPAAHGVLRLILELN 110
>gi|328771729|gb|EGF81768.1| hypothetical protein BATDEDRAFT_16021 [Batrachochytrium
dendrobatidis JAM81]
Length = 483
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 172/287 (59%), Positives = 219/287 (76%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LF EITRILNHIMAV THALDVGA+TPF WLFEEREK+MEFYER SGARMHA
Sbjct: 185 PRAKYIRTLFGEITRILNHIMAVATHALDVGALTPFLWLFEEREKLMEFYERVSGARMHA 244
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGGV+LD+PIGL++DI+ + +S+R+DE+E+ L+ +R+W R ++VG+V+A++AL
Sbjct: 245 AYIRPGGVSLDLPIGLMEDIHKWALQYSSRIDELEEALSNSRIWKNRLREVGVVTAQEAL 304
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
+ FSGVMLRGSG++WDLRK QPYD Y+ +FDI +GT+G+ + ++EMRQSLRI+
Sbjct: 305 GFSFSGVMLRGSGVEWDLRKEQPYDAYDEVDFDIAVGTNGDCYDRYLCRVEEMRQSLRII 364
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+Q I +MP G V+ DD KI PSR+ MK GY VP G TYT +EAPK
Sbjct: 365 DQCIKQMPAGPVKVDDNKIVPPSRASMKESMEALIHHFKLYSEGYSVPAGETYTVIEAPK 424
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGV+LVSDGTS+PYRC I+APGF HLAA++ + KG LAD V II
Sbjct: 425 GEFGVFLVSDGTSRPYRCHIRAPGFPHLAAVDFMSKGHLLADAVTII 471
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI VP RAKY
Sbjct: 130 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIHVPPRAKY 189
Query: 370 IRVMF 374
IR +F
Sbjct: 190 IRTLF 194
>gi|113170488|ref|YP_717279.1| nad7 [Ostreococcus tauri]
gi|112806895|emb|CAL36401.1| unnamed protein product [Ostreococcus tauri]
Length = 394
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 218/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITR+LNH++A+ HA+DVGA+TPF W FEEREK+MEFYER SGAR+HA+Y
Sbjct: 98 AQYIRVLFSEITRLLNHLLALSCHAMDVGALTPFLWAFEEREKLMEFYERVSGARLHASY 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P GL DD++ F TF++R+DE+E+MLT+NR+W QR D+G VSA+DA++Y
Sbjct: 158 IRPGGVAQDLPQGLCDDMHTFCQTFASRIDEMEEMLTQNRIWKQRLVDIGTVSAKDAISY 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK QPY+ YE+ EFDIP+G+ G+ +I ++EMRQSLR++ Q
Sbjct: 218 GFSGVMLRGSGVAWDLRKTQPYEVYESLEFDIPVGSQGDCYDRYLIRIEEMRQSLRLIAQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NK+P G V+ DD KIS PSR MK G+ VP TY VEAPKGE
Sbjct: 278 CLNKLPQGLVKVDDKKISPPSRKHMKESMESLIHHFKLFTEGFIVPASETYVGVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT+KPYRCKI+APGF HL AL+ + K LAD+V II
Sbjct: 338 FGVYLVSNGTNKPYRCKIRAPGFVHLQALDFMSKHHLLADVVTII 382
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMM E YSLAVE LL+
Sbjct: 34 GEVVERADPHIGLLHRGTEKLIEYKNYIQALPYFDRLDYVSMMAQEHAYSLAVENLLHCP 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F+
Sbjct: 94 VPLRAQYIRVLFS 106
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+K+++N +NFGPQHPAAHGVL L E+
Sbjct: 5 QKKLKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|378727238|gb|EHY53697.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
[Exophiala dermatitidis NIH/UT8656]
Length = 480
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 171/279 (61%), Positives = 215/279 (77%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HA YVRPGGV
Sbjct: 190 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAGYVRPGGV 249
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
D+P+GLLDDIY + + F R+DE E++LT+NR+WI RTK VG+VSA DALNYGFSGVM
Sbjct: 250 KADLPLGLLDDIYAWATQFGDRIDETEELLTDNRIWIGRTKGVGVVSAADALNYGFSGVM 309
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPY+ Y+ EFD+P+G +G+ + M+E RQSLRI+ Q ++KMP
Sbjct: 310 LRGSGVPWDIRKSQPYEVYDKVEFDVPVGQNGDCYDRYLCRMEEFRQSLRIIHQCLDKMP 369
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KI+ P R+ M KGY VPPG TYTA+EAPKGE GVYLV
Sbjct: 370 PGPVKVEDYKIAPPPRAAMKENMEALIHHFLLFTKGYTVPPGDTYTAIEAPKGEMGVYLV 429
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCK++APGFAHL+ ++I +G LAD VAII
Sbjct: 430 SDGSERPYRCKVRAPGFAHLSCFDQISRGHLLADAVAII 468
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 58/66 (87%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDR DYVSMM NEQ Y LAVEKLLNIE+P RAK+
Sbjct: 127 DPHVGLLHRGTEKLIEYKTYLQALPYFDRFDYVSMMTNEQVYCLAVEKLLNIEIPERAKW 186
Query: 370 IRVMFT 375
IR MF
Sbjct: 187 IRTMFA 192
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 92 RKIRHYTVNFGPQHPAAHGVLRLILELN 119
>gi|347842399|emb|CCD56971.1| similar to NADH-ubiquinone oxidoreductase 49 kDa subunit
[Botryotinia fuckeliana]
Length = 473
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 171/279 (61%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 183 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 242
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E++LT+NR+WI RTK VG+VSA DALN F+GVM
Sbjct: 243 HQDIPVGLLDDIYQWATQFGDRIDETEELLTDNRIWIGRTKGVGVVSAADALNLSFTGVM 302
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ +D+RK QPYD Y+ +FD+P+G HG+ + M+E RQSLRI+ Q +NKMP
Sbjct: 303 LRGSGVPFDVRKSQPYDAYDQVDFDVPVGVHGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 362
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G +R +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 363 AGPIRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMGVYVV 422
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 423 SDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAII 461
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKW 179
Query: 370 IRVMF 374
IR +F
Sbjct: 180 IRTLF 184
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 84 KRKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|376403807|ref|YP_005090292.1| nad7 gene product (mitochondrion) [Heterosigma akashiwo]
gi|239811624|gb|ACS27111.1| NADH dehydrogenase subunit 7 [Heterosigma akashiwo]
gi|239811664|gb|ACS27150.1| NADH dehydrogenase subunit 7 [Heterosigma akashiwo]
gi|294610387|dbj|BAI70606.2| NADH dehydrogenase subunit 7 [Heterosigma akashiwo]
Length = 397
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 175/285 (61%), Positives = 217/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 101 AQYIRVLFCEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHAAY 160
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+P+G+LDDIY F F RLDE+E+MLT NR+W QR D+GIVS +DA ++
Sbjct: 161 FRPGGVSQDLPLGILDDIYLFSKQFVTRLDEMEEMLTSNRIWKQRLVDIGIVSKKDACDW 220
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGS I WDLRK QPY+ Y+ EF++P+G +G+ +I M+EMR+SL+I++Q
Sbjct: 221 GFSGVMLRGSTIPWDLRKNQPYEVYDKMEFEVPVGKNGDCYDRYLIRMQEMRESLKIIQQ 280
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N MP G V+ DD KI++PSRS+MK G VP G TYTA EAPKGE
Sbjct: 281 CLNNMPLGPVKLDDHKITSPSRSDMKQSMESLIHHFKLYTEGMVVPAGETYTATEAPKGE 340
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT++PYRCKIKAPGF HL AL+ + KG +AD+V II
Sbjct: 341 FGVYLVSNGTNRPYRCKIKAPGFGHLQALDFMAKGHMVADVVTII 385
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E Y L +EKLL +
Sbjct: 37 GEVVDRADPHIGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMTQEHTYVLGIEKLLGCD 96
Query: 363 VPLRAKYIRVMFT 375
+P+RA+YIRV+F
Sbjct: 97 IPVRAQYIRVLFC 109
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ ++I+N INFGPQHPAAHGVL L E+
Sbjct: 7 LSRKIKNFTINFGPQHPAAHGVLRLVLELN 36
>gi|17568379|ref|NP_510569.1| Protein GAS-1 [Caenorhabditis elegans]
gi|3183092|sp|Q93873.2|NDUS2_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
protein 2, mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; AltName: Full=NADH-ubiquinone
oxidoreductase 49 kDa subunit; Flags: Precursor
gi|3878424|emb|CAB01886.1| Protein GAS-1 [Caenorhabditis elegans]
Length = 482
Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 176/279 (63%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L E+TRI NHIM + THALDVGAMTPFFW+FEEREK+ EF ER SGARMHA YVRPGGV
Sbjct: 192 LMGELTRIQNHIMGITTHALDVGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGV 251
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+PIGL+DDIY + F R+DE+EDMLTENR+W RT D+G+VSA DALN+GFSGVM
Sbjct: 252 AWDLPIGLMDDIYDWAIKFPERIDELEDMLTENRIWKARTIDIGLVSAADALNWGFSGVM 311
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
+RGSGIK D+RK +PYD Y + EFD+PIGT G+ + ++EMRQSL IV Q +NKMP
Sbjct: 312 VRGSGIKQDVRKTEPYDAYADMEFDVPIGTKGDCYDRYLCRIEEMRQSLNIVHQCLNKMP 371
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++ DD K+ P R+EMK G+ VPPGATY +EAPKGEFGVYLV
Sbjct: 372 AGEIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLV 431
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+DGT KPYRC I+APGFAHLAA+ + S +ADIVA+I
Sbjct: 432 ADGTGKPYRCFIRAPGFAHLAAIHDVCYMSLIADIVAVI 470
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 58/63 (92%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHR TEKLIE+KTYTQALPYFDRLDYVSMMCNEQ +SLAVEKLL I++P RAKYI
Sbjct: 130 PHIGLLHRATEKLIEHKTYTQALPYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPTRAKYI 189
Query: 371 RVM 373
R +
Sbjct: 190 RTL 192
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + NM++NFGPQHPAAHGVL L ++
Sbjct: 93 EKNLENMILNFGPQHPAAHGVLRLVLKL 120
>gi|302655857|ref|XP_003019710.1| hypothetical protein TRV_06252 [Trichophyton verrucosum HKI 0517]
gi|291183452|gb|EFE39065.1| hypothetical protein TRV_06252 [Trichophyton verrucosum HKI 0517]
Length = 473
Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 171/290 (58%), Positives = 214/290 (73%), Gaps = 20/290 (6%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 177 AKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 236
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV DIP+GLLDDIY + + F+ R+DE E++LT+NR+W RT VG+V+A +ALNY
Sbjct: 237 VRPGGVHQDIPLGLLDDIYQWATQFADRIDETEELLTDNRIWKARTVGVGVVTAAEALNY 296
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 297 GFSGVMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQ 356
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+NKMP G VR +D KIS P R M KGY VPPG TY+A+EAPKGE
Sbjct: 357 CLNKMPAGPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGE 416
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIG 314
V+LVSDG+ +PYRCKI+APGFAHL +++ +G LAD VAII H+
Sbjct: 417 MAVFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAIIGTHVS 466
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 179
Query: 370 IRVMF 374
IR MF
Sbjct: 180 IRTMF 184
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|296811214|ref|XP_002845945.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma otae CBS
113480]
gi|238843333|gb|EEQ32995.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma otae CBS
113480]
Length = 473
Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 172/285 (60%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 177 AKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 236
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV DIP+GLLDDIY + + FS R+DE E++LT+NR+W RT VG+V+A +ALNY
Sbjct: 237 VRPGGVHQDIPVGLLDDIYQWATQFSDRIDETEELLTDNRIWKARTVGVGVVTAAEALNY 296
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 297 GFSGVMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQ 356
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+NKMP G VR +D KIS P R M KGY VPPG TY+A+EAPKGE
Sbjct: 357 CLNKMPAGPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGE 416
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+LVSDG+ +PYRCKI+APGFAHLA +++ +G LAD VAII
Sbjct: 417 MAVFLVSDGSERPYRCKIRAPGFAHLACFDQLSRGHLLADAVAII 461
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIEVP RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEVPERAKW 179
Query: 370 IRVMF 374
IR MF
Sbjct: 180 IRTMF 184
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|119481603|ref|XP_001260830.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119408984|gb|EAW18933.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 470
Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 180 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 239
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+V+A DALN F+GVM
Sbjct: 240 SQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVTAADALNMSFTGVM 299
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 300 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 359
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 360 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLV 419
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 420 SDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAII 458
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 117 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 176
Query: 370 IRVMF 374
IR +F
Sbjct: 177 IRTLF 181
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 80 VDRKIRHYTVNFGPQHPAAHGVLRLILELN 109
>gi|146322982|ref|XP_755704.2| NADH-ubiquinone oxidoreductase 49 kDa subunit [Aspergillus
fumigatus Af293]
gi|129558557|gb|EAL93666.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus fumigatus Af293]
gi|159129761|gb|EDP54875.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus fumigatus A1163]
Length = 470
Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 213/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 180 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 239
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+V+A DA+N F+GVM
Sbjct: 240 SQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVTAADAINMSFTGVM 299
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 300 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 359
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVYLV
Sbjct: 360 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVYLV 419
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL+ ++I +G LAD VAII
Sbjct: 420 SDGSERPYRCKIRAPGFAHLSGFDQISRGHLLADAVAII 458
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 117 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 176
Query: 370 IRVMF 374
IR MF
Sbjct: 177 IRTMF 181
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 24/30 (80%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 80 VDRKIRHYTVNFGPQHPAAHGVLRLILELN 109
>gi|361131999|gb|EHL03614.1| putative NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrial [Glarea lozoyensis 74030]
Length = 428
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 214/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 126 AKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 185
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV D+P+GLLDDIY + + F R+DE E++LT+NR+WI RTK +G+VSA DALN
Sbjct: 186 VRPGGVHQDMPVGLLDDIYQWATQFGDRIDETEELLTDNRIWIGRTKGIGVVSAADALNL 245
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
F+GVMLRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 246 SFTGVMLRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQ 305
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+NKMP G +R +D K+S P R+ M KGY VPPG TY+A+EAPKGE
Sbjct: 306 CLNKMPPGPIRVEDYKVSPPPRAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGE 365
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVY+VSDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 366 MGVYVVSDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAII 410
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 316 LHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMF 374
L TE+ + + YT ALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+IR +F
Sbjct: 76 LEHTTEEDRKIRHYT-ALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTLF 133
>gi|261196648|ref|XP_002624727.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|239595972|gb|EEQ78553.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|239609551|gb|EEQ86538.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis ER-3]
gi|327350213|gb|EGE79070.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 479
Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 189 LFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 248
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E++LT+NR+W RT+ +G+V+A +ALNYGF+GVM
Sbjct: 249 HQDIPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGIGVVTAAEALNYGFTGVM 308
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 309 LRGSGVPWDVRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 368
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P ++ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 369 AGPVRVEDYKISPPPKAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLV 428
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL+ +++ +G LAD VAII
Sbjct: 429 SDGSERPYRCKIRAPGFAHLSCFDQVARGHLLADAVAII 467
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 126 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKW 185
Query: 370 IRVMF 374
IR +F
Sbjct: 186 IRTLF 190
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 25 VPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V + +++R+ +NFGPQHPAAHGVL L E+
Sbjct: 87 VELGRKVRHYTVNFGPQHPAAHGVLRLILELN 118
>gi|145932347|ref|YP_001165395.1| NADH dehydrogenase subunit 7 [Phytophthora sojae]
gi|110169590|gb|ABG54056.1| NADH dehydrogenase subunit 7 [Phytophthora sojae]
Length = 392
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 172/285 (60%), Positives = 216/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++AV HALDVGAMTP+FW FEEREK+MEFYER SGARMHAAY
Sbjct: 96 AQYIRVLFSEITRILNHLLAVCCHALDVGAMTPYFWGFEEREKLMEFYERVSGARMHAAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DIY F F+ RLDE+E+MLT NR+W QR D+G+VSA+DALN
Sbjct: 156 FRPGGVNQDLPKGLLNDIYIFCDQFNTRLDEIEEMLTNNRIWKQRLVDIGVVSAKDALNL 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ Y+ EFD+P+GT+G+ +I ++EMRQS+RI+ Q
Sbjct: 216 GFSGVMLRGSGISWDLRKTQPYEIYDQLEFDVPVGTNGDCYDRYLIRIEEMRQSIRIILQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NK+P G ++ DD KI+ P+R+++K V G TYT +EAPKGE
Sbjct: 276 VLNKIPNGPIKLDDKKITNPNRTQIKNSMESLIHHFKYYSENISVNSGETYTVIEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+GVYLVSDGT+KPYRCKIK+PGF HL AL+ I + +AD+V II
Sbjct: 336 YGVYLVSDGTNKPYRCKIKSPGFLHLQALDFIAQNHMIADVVTII 380
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V D HIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMMC E Y LAVEKLLN +
Sbjct: 32 GEVVQKADSHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMCQEHAYVLAVEKLLNCD 91
Query: 363 VPLRAKYIRVMFT 375
+PLRA+YIRV+F+
Sbjct: 92 IPLRAQYIRVLFS 104
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+I+N INFGPQHPAAHGVL L E+
Sbjct: 4 KKIKNFSINFGPQHPAAHGVLRLILELN 31
>gi|146415140|ref|XP_001483540.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Meyerozyma guilliermondii ATCC 6260]
gi|146392013|gb|EDK40171.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Meyerozyma guilliermondii ATCC 6260]
Length = 476
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 174/279 (62%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH M+V +H +DVG +TPF W FEEREK+MEFYER SGAR+H+AYVRPGGV
Sbjct: 186 LFGEITRVLNHCMSVLSHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGV 245
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDIY + + F R+DEVE+++T+NR+W RTKDVG+VSAEDALNY SGVM
Sbjct: 246 AQDLPAGLLDDIYMWATQFGDRIDEVEELVTDNRIWQARTKDVGVVSAEDALNYSLSGVM 305
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD YE +FDIP+G +G+ +I M E RQSLRI+EQ IN MP
Sbjct: 306 LRGSGIAYDIRKAQPYDAYELVDFDIPVGQNGDCYDRYLIRMAEFRQSLRIIEQCINDMP 365
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P+R M KGY VPPG TYTA+EAPKGE VY+V
Sbjct: 366 EGPVKVEDFKISPPARQVMKEDMEALIHHFLLFTKGYAVPPGETYTAIEAPKGEMAVYVV 425
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G+ LAD VAII
Sbjct: 426 SDGSERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAII 464
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NE ++LAVEKLLN+EVPLRAKY
Sbjct: 123 DPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKY 182
Query: 370 IRVMF 374
IR +F
Sbjct: 183 IRTLF 187
Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 21 NDNLVPVEKQ---IRNMVINFGPQHPAAHGVLLLFAEI 55
+D+ V+KQ IR+ INFGPQHPAAHGVL L E+
Sbjct: 77 DDDPKHVDKQNTKIRHFTINFGPQHPAAHGVLRLILEL 114
>gi|320582439|gb|EFW96656.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor
[Ogataea parapolymorpha DL-1]
Length = 499
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 172/282 (60%), Positives = 214/282 (75%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRP
Sbjct: 206 IRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRP 265
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+ D+P GLLDDIY + + F R+DE E++LT+NR+W QRT D+G V+AEDALNYG S
Sbjct: 266 GGVSQDLPFGLLDDIYMWATQFGDRIDETEELLTDNRIWKQRTVDIGTVTAEDALNYGLS 325
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSG+ +D+RK QPYD YE +FD+P+GT G+ +I M E RQSLRI+EQ IN
Sbjct: 326 GVMLRGSGVPFDIRKSQPYDAYEYVDFDVPVGTRGDCYDRYLIRMAEFRQSLRIIEQCIN 385
Query: 223 KMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGV 267
MP G V+ +D KI+ P++S M KGY VPPG TYT +EAPKGE GV
Sbjct: 386 DMPAGPVKVEDFKIAPPAKSLMKTDMEALIHHFLVFTKGYQVPPGETYTVIEAPKGEMGV 445
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
Y+VSDG+ +PYRCKI+APGF+HLAA + I +G L D VAII
Sbjct: 446 YVVSDGSERPYRCKIRAPGFSHLAAFDHISRGHLLPDAVAII 487
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NEQ +SLAVEKLLNIEVP+RAKY
Sbjct: 146 DPHVGLLHRGTEKLIESKTYIQALPYFDRLDYVSMMTNEQVFSLAVEKLLNIEVPIRAKY 205
Query: 370 IRVMF 374
IR MF
Sbjct: 206 IRTMF 210
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 10 KEETKWKIINWNDNLVPVEK-QIRNMVINFGPQHPAAHGVLLLFAEI 55
K+ W + N + PV K +IR+ +NFGPQHPAAHGVL L E+
Sbjct: 91 KDWDTWNLYNEDSPDFPVRKNKIRHFTLNFGPQHPAAHGVLRLILEL 137
>gi|302923307|ref|XP_003053647.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734588|gb|EEU47934.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 468
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 178 LFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI+R + VG+V A +ALN F+GVM
Sbjct: 238 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVPASEALNLSFTGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+GT+G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 298 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 357
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D K+S P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 358 AGPVRVEDYKVSPPPRSAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVYVV 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRC I+APGFAHL + + KG LAD VA+I
Sbjct: 418 SDGSERPYRCHIRAPGFAHLGGFDHVSKGHLLADAVAVI 456
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC++LAVEKLLNIE+P RAK+
Sbjct: 115 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPERAKF 174
Query: 370 IRVMF 374
IR +F
Sbjct: 175 IRTLF 179
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++R+ +NFGPQHPAAHGVL L E+
Sbjct: 79 DRKVRHYTVNFGPQHPAAHGVLRLILELN 107
>gi|346324395|gb|EGX93992.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Cordyceps militaris
CM01]
Length = 474
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+H+AYVRPGGV
Sbjct: 184 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI+R + VG++ A +ALN F+GVM
Sbjct: 244 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVLPAREALNLSFTGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+GT+G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 304 LRGSGVPWDVRKSQPYDAYDKVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
GG VR +D KIS P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 364 GGPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVYVV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRC I+APGFAHL + + KG LAD VA+I
Sbjct: 424 SDGSERPYRCHIRAPGFAHLGGFDHVAKGHLLADAVAVI 462
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC++LAVEKLLNIE+P RAKY
Sbjct: 121 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKY 180
Query: 370 IRVMF 374
IR +F
Sbjct: 181 IRTLF 185
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++R+ +NFGPQHPAAHGVL L E+
Sbjct: 85 DRKVRHYTVNFGPQHPAAHGVLRLILELN 113
>gi|162134230|gb|ABX82551.1| NADH dehydrogenase subunit 7 [Trebouxia aggregata]
Length = 398
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/285 (58%), Positives = 220/285 (77%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+EITR+LNH++AV HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 102 AQYIRVIFSEITRLLNHLLAVTCHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P+GL +DIY F F++R+DE+E+MLT NR+W QR D+G+V+A+ A+++
Sbjct: 162 VRPGGVAQDLPVGLCEDIYKFAQQFASRIDEMEEMLTNNRIWKQRLVDIGVVTADQAMDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM RGSGI WDLRK QPYD Y+ FD+P+G G+ +I ++EMRQS+RI+ Q
Sbjct: 222 GFSGVMARGSGISWDLRKTQPYDVYDKMLFDVPVGRKGDCYDRYLIRIEEMRQSIRIITQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
AIN++P G +++DD KI+ PSRS++K G+ VP G TYTAVEAPKGE
Sbjct: 282 AINEIPNGMIKSDDRKITPPSRSQIKQSMESLIHHFKLYTEGFAVPSGETYTAVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT++PYRCKI+APGFAHL L+ + + LAD+V II
Sbjct: 342 FGVYLVSNGTNRPYRCKIRAPGFAHLQGLDFMARNHMLADVVTII 386
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMC E YSLAVEKLL +
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCQEHAYSLAVEKLLQCQ 97
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F+
Sbjct: 98 VPLRAQYIRVIFS 110
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+K+++N INFGPQHPAAHGVL L E+
Sbjct: 8 TQKKVKNFTINFGPQHPAAHGVLRLVLEMN 37
>gi|435856270|ref|YP_007317106.1| NADH dehydrogenase subunit 7 (mitochondrion) [Nannochloropsis
gaditana]
gi|429126169|gb|AFZ64339.1| NADH dehydrogenase subunit 7 (mitochondrion) [Nannochloropsis
gaditana]
Length = 398
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 218/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 102 AQHIRVLFLEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV+ DIP+GLLDDIY F F RLDE+E+MLT NR+W QR D+G+VSA+DA+++
Sbjct: 162 IRPGGVSQDIPLGLLDDIYIFAEQFGTRLDEMEEMLTANRIWKQRLVDIGVVSAKDAIDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ Y +F++P+G +G+ +I ++EMRQSL+++ Q
Sbjct: 222 GFSGVMLRGSGIPWDLRKSQPYEIYSKLDFEVPVGNNGDCFDRYLIRVEEMRQSLKLIWQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N +P G +++DD K++ PSR+ +K G +P G TYTA EAPKGE
Sbjct: 282 TLNTIPNGPIKSDDRKLTPPSRAHLKQSMESLIHHFKLYTEGMIIPAGETYTATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+++PYRCKIKAPGF HL AL+ + KG +AD+V II
Sbjct: 342 FGVYLVSDGSNRPYRCKIKAPGFGHLQALDFMAKGHMVADVVTII 386
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 61/72 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVSMM E YSLAVEKL N +
Sbjct: 38 GEIVERADPHIGLLHRGTEKLIEHKTYIQALPYFDRLDYVSMMAQEHTYSLAVEKLANTK 97
Query: 363 VPLRAKYIRVMF 374
+P+RA++IRV+F
Sbjct: 98 IPMRAQHIRVLF 109
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLL 51
+ K+I+N INFGPQHPAAHGVL L
Sbjct: 8 LSKKIKNFTINFGPQHPAAHGVLRL 32
>gi|302511157|ref|XP_003017530.1| hypothetical protein ARB_04412 [Arthroderma benhamiae CBS 112371]
gi|291181101|gb|EFE36885.1| hypothetical protein ARB_04412 [Arthroderma benhamiae CBS 112371]
Length = 493
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 170/290 (58%), Positives = 213/290 (73%), Gaps = 20/290 (6%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 177 AKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 236
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV DIP+GLLDDIY + + F+ R+DE E++LT+NR+W RT VG+V+A +ALNY
Sbjct: 237 VRPGGVHQDIPLGLLDDIYQWATQFADRIDETEELLTDNRIWKARTVGVGVVTAAEALNY 296
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 297 GFSGVMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQ 356
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+N MP G VR +D KIS P R M KGY VPPG TY+A+EAPKGE
Sbjct: 357 CLNNMPAGPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGE 416
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIG 314
V+LVSDG+ +PYRCKI+APGFAHL +++ +G LAD VAII H+
Sbjct: 417 MAVFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAIIGTHVS 466
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 179
Query: 370 IRVMF 374
IR MF
Sbjct: 180 IRTMF 184
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|409052449|ref|YP_006666408.1| NADH dehydrogenase subunit 7 (mitochondrion) [Trebouxiophyceae sp.
MX-AZ01]
gi|402746064|gb|AFQ93763.1| NADH dehydrogenase subunit 7 (mitochondrion) [Trebouxiophyceae sp.
MX-AZ01]
Length = 398
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 173/285 (60%), Positives = 218/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++A+ HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 102 AQHIRVLFAEITRILNHLLALTCHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+PIGL +DIY F F++R+DE+E+MLT NR+W QR DVG+VSA+ AL++
Sbjct: 162 IRPGGVAQDLPIGLSEDIYRFARQFASRIDEMEEMLTSNRIWKQRLVDVGVVSADQALDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPYD Y+ +F IP+G+ G+ +I ++EMRQSLRI+ Q
Sbjct: 222 GFSGVMLRGSGIGWDLRKTQPYDIYDKIDFQIPVGSRGDCYDRYLIRVEEMRQSLRIIMQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ MP G ++ DD KI+ PSRS+MK G+ VP G TYTAVEAPKGE
Sbjct: 282 CLQDMPQGVIKADDRKITPPSRSQMKGSMESLIHHFKLYTEGFVVPAGETYTAVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT++PYRCKI+APGFAHL L+ + + LAD+V II
Sbjct: 342 FGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMARNHMLADVVTII 386
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMC E YSLAVE+LL E
Sbjct: 38 GEVVKRADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCQEHGYSLAVERLLGSE 97
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F
Sbjct: 98 VPERAQHIRVLFA 110
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++N INFGPQHPAAHGVL L E+
Sbjct: 10 QKVKNFTINFGPQHPAAHGVLRLVLEMN 37
>gi|334701570|ref|YP_004563943.1| NADH dehydrogenase subunit 7 [Phytophthora mirabilis]
gi|301505297|gb|ADK76338.1| NADH dehydrogenase subunit 7 [Phytophthora mirabilis]
Length = 392
Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 173/285 (60%), Positives = 215/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++AV HALDVGAMTP+FW FEEREK+MEFYER SGARMHAAY
Sbjct: 96 AQYIRVLFSEITRILNHLLAVCCHALDVGAMTPYFWGFEEREKLMEFYERVSGARMHAAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DIY F F+ RLDE+E+MLT NR+W QR D+GIVSA+DALN
Sbjct: 156 FRPGGVNQDLPKGLLNDIYIFCDQFNTRLDEIEEMLTNNRIWKQRLVDIGIVSAKDALNL 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ Y+ +FDIP+GT+G+ +I M+EMRQS+RI+ Q
Sbjct: 216 GFSGVMLRGSGISWDLRKTQPYEIYDQLDFDIPVGTNGDCYDRYLIRMEEMRQSIRIILQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NK+P G ++ DD KI+ P+R ++K + G TYT +EAPKGE
Sbjct: 276 ILNKIPNGPIKLDDKKITNPNRIQIKNSMESLIHHFKYYSENISINSGETYTVIEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+GVYLVSDGT+KPYRCKIK+PGF HL AL+ + K +AD+V II
Sbjct: 336 YGVYLVSDGTNKPYRCKIKSPGFLHLQALDFLAKNHMIADVVTII 380
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V D HIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMMC E Y LA+EKLLN +
Sbjct: 32 GEVVQKADSHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMCQEHAYVLAIEKLLNCD 91
Query: 363 VPLRAKYIRVMFT 375
+PLRA+YIRV+F+
Sbjct: 92 IPLRAQYIRVLFS 104
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+I+N INFGPQHPAAHGVL L E+
Sbjct: 4 KKIKNFSINFGPQHPAAHGVLRLILELN 31
>gi|121716356|ref|XP_001275783.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119403940|gb|EAW14357.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 474
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 184 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+VSA DALN F+GVM
Sbjct: 244 SQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NK+P
Sbjct: 304 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKIP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 364 AGPVRVEDYKISPPPRVAMKENMEALIHHFLLFTKGYSVPPGETYSAIEAPKGEMGVFLV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 424 SDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAII 462
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNI++P RAK+
Sbjct: 121 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIDIPERAKW 180
Query: 370 IRVMF 374
IR +F
Sbjct: 181 IRTLF 185
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 84 TDRKIRHYTVNFGPQHPAAHGVLRLILELN 113
>gi|145932440|ref|YP_001165352.1| NADH dehydrogenase subunit 7 [Phytophthora ramorum]
gi|110169638|gb|ABG54103.1| NADH dehydrogenase subunit 7 [Phytophthora ramorum]
gi|188038002|gb|ACD46620.1| NADH dehydrogenase subunit 7 [Phytophthora ramorum]
Length = 392
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 173/285 (60%), Positives = 215/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++AV HALDVGAMTP+FW FEEREK+MEFYER SGARMHAAY
Sbjct: 96 AQYIRVLFSEITRILNHLLAVCCHALDVGAMTPYFWGFEEREKLMEFYERVSGARMHAAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DIY F F+ RLDE+E+MLT NR+W QR D+GIVSA+DALN
Sbjct: 156 FRPGGVNQDLPKGLLNDIYIFCEQFNTRLDEIEEMLTNNRIWKQRLVDIGIVSAKDALNL 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ Y+ +FDIP+GT+G+ +I ++EMRQS+RI+ Q
Sbjct: 216 GFSGVMLRGSGISWDLRKTQPYEIYDQLDFDIPVGTNGDCYDRYLIRIEEMRQSIRIILQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NK+P G ++ DD KI+ P+R ++K V G TYT +EAPKGE
Sbjct: 276 VLNKIPNGPIKLDDKKITNPNRIQIKNSMESLIHHFKYYSENISVNSGETYTVIEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+GVYL+SDGT+KPYRCKIK+PGF HL AL+ I K +AD+V II
Sbjct: 336 YGVYLISDGTNKPYRCKIKSPGFLHLQALDFIAKNHMIADVVTII 380
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V D HIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMMC E Y LA+EKLLN +
Sbjct: 32 GEVVQKADSHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMCQEHAYVLAIEKLLNCD 91
Query: 363 VPLRAKYIRVMFT 375
+PLRA+YIRV+F+
Sbjct: 92 IPLRAQYIRVLFS 104
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+I+N INFGPQHPAAHGVL L E+
Sbjct: 4 KKIKNFSINFGPQHPAAHGVLRLILELN 31
>gi|110225684|ref|YP_665689.1| NADH dehydrogenase subunit 7 [Mesostigma viride]
gi|17222555|gb|AAL36728.1|AF353999_8 NADH dehydrogenase subunit 7 [Mesostigma viride]
gi|315320220|gb|ADU04589.1| NADH dehydrogenase subunit 7 (mitochondrion) [Mesostigma viride]
Length = 399
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 171/285 (60%), Positives = 216/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITR+LNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHAAY
Sbjct: 103 AQYIRVLFSEITRLLNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHAAY 162
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA DIP GL DDIY F F++R+DE+E+MLT NR+W +R D+G+V+AE A+ +
Sbjct: 163 IRPGGVAQDIPQGLCDDIYQFTQQFASRIDEMEEMLTNNRIWKERLIDIGVVTAEKAMQW 222
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+GVMLRGSGI WDLRK +PY+ Y+ EFDIP+GT G+ ++ ++EMRQSLRI+ Q
Sbjct: 223 GFTGVMLRGSGIPWDLRKAEPYEVYDQLEFDIPVGTKGDCYDRYLVRVEEMRQSLRIIVQ 282
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G V+ DD KI PSR MK G+ VP G TYTA+EAPKGE
Sbjct: 283 CLNKMPLGIVQIDDRKIMPPSRFSMKHSMESLIHHFKNFTEGFSVPAGETYTAIEAPKGE 342
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGT++PYRCKI+APGF HL L+ + K LAD+V II
Sbjct: 343 FGVYLVSDGTNRPYRCKIRAPGFVHLQGLDMMSKKHMLADVVTII 387
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVEKLL I
Sbjct: 38 GEVVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLLGIR 97
Query: 363 -VPLRAKYIRVMFT 375
VPLRA+YIRV+F+
Sbjct: 98 SVPLRAQYIRVLFS 111
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+++N +NFGPQHPAAHGVL L E+
Sbjct: 10 KKVKNFQLNFGPQHPAAHGVLRLVLEMN 37
>gi|116180928|ref|XP_001220313.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Chaetomium globosum CBS 148.51]
gi|88185389|gb|EAQ92857.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Chaetomium globosum CBS 148.51]
Length = 485
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF E+TR+LNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 195 LFGELTRVLNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 254
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI R + VG+VSA DALN F+GVM
Sbjct: 255 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLQGVGVVSAADALNLSFTGVM 314
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+GT+G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 315 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIIQCLNKMP 374
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 375 AGPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVV 434
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHL+ + + +G LAD VA+I
Sbjct: 435 SDGSERPYRVSIRAPGFAHLSGFDHVSRGHLLADAVAVI 473
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 132 DPHVGLLHRGTEKLCEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKF 191
Query: 370 IRVMF 374
IR +F
Sbjct: 192 IRTLF 196
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++R+ +NFGPQHPAAHGVL L E+
Sbjct: 96 DRKVRHYTVNFGPQHPAAHGVLRLILELN 124
>gi|324505397|gb|ADY42321.1| NADH dehydrogenase ubiquinone iron-sulfur protein 2 [Ascaris suum]
Length = 480
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 173/287 (60%), Positives = 214/287 (74%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L E+TR+ NHIM + THALD+GAMTP FW+FEEREK+ EF ER SGARMHA
Sbjct: 182 PRAKFIRTLVYELTRLQNHIMGITTHALDIGAMTPLFWMFEEREKLFEFTERISGARMHA 241
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+P+G +DD+Y + F R+DE+EDMLTENR+W RT DVGIV+A DAL
Sbjct: 242 NYVRPGGVAWDLPLGWMDDVYDWAVKFPERIDELEDMLTENRIWKARTIDVGIVTASDAL 301
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
N+GFSGVMLRGSGIKWD+RK QPYD YE EFD+P+G +G+ + ++EMRQSLR+V
Sbjct: 302 NWGFSGVMLRGSGIKWDVRKTQPYDAYEELEFDVPVGKNGDCYDRYLCRVEEMRQSLRLV 361
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +NKMP GE++ DD K+ P RSEMK G+ VPPGATY VEAPK
Sbjct: 362 LQCLNKMPPGEIKVDDHKVVPPKRSEMKESMEALIHHFKFFTEGFQVPPGATYLPVEAPK 421
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYL++DGT+KPYRC ++APGFAHL+ + I S +AD+VA+I
Sbjct: 422 GEFGVYLLADGTTKPYRCFLRAPGFAHLSVIHDICYMSLIADMVAVI 468
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 61/71 (85%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ PHIGLLHRGTEKLIEYKTYTQALPYFDRLDY+SMMCNE ++LA+EKLL I+
Sbjct: 120 GEVIIKATPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYISMMCNEGAFALAIEKLLRID 179
Query: 363 VPLRAKYIRVM 373
VP RAK+IR +
Sbjct: 180 VPPRAKFIRTL 190
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + NMV+NFGPQHPAAHGVL L ++
Sbjct: 91 EKSLENMVLNFGPQHPAAHGVLRLVLKL 118
>gi|315044491|ref|XP_003171621.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
118893]
gi|311343964|gb|EFR03167.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
118893]
Length = 473
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 171/285 (60%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 177 AKWIRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 236
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV DIP+GLLDDIY + + FS R+DE E++LT+NR+W RT VG+V+A +ALNY
Sbjct: 237 VRPGGVHQDIPVGLLDDIYQWATQFSDRIDETEELLTDNRIWKARTVGVGVVTAAEALNY 296
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 297 GFSGVMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQ 356
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+NK+P G VR +D KIS P R M KGY VPPG TY+A+EAPKGE
Sbjct: 357 CLNKIPAGPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGE 416
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+LVSDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 417 MAVFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAII 461
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 179
Query: 370 IRVMF 374
IR +F
Sbjct: 180 IRTLF 184
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|449299412|gb|EMC95426.1| hypothetical protein BAUCODRAFT_123871 [Baudoinia compniacensis
UAMH 10762]
Length = 473
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 168/285 (58%), Positives = 216/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH+M++ +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 177 AKWIRTLFGEITRILNHLMSILSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 236
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P+GLLDDIY + + F R+DE E++LT+NR+WI RTK +G+VSA DALNY
Sbjct: 237 VRPGGVAQDLPMGLLDDIYQWATQFGDRIDETEELLTDNRIWIGRTKGIGVVSAADALNY 296
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
F+GVMLRGSG+ WD+RK QPYD Y +FD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 297 SFTGVMLRGSGVPWDVRKSQPYDAYGEVDFDVPVGVNGDCYDRYLCRMEEFRQSLRIIYQ 356
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+NKMP G ++ +D KI+ P R+ M KGY VPPG TY+A+EAPKGE
Sbjct: 357 CLNKMPPGPIKVEDYKIAPPPRAAMKENMEALIHHFLLFSKGYTVPPGETYSAIEAPKGE 416
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GV++VSDG+ +PYRCKI+APGFAHL+ ++I +G LAD VAII
Sbjct: 417 MGVFVVSDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAII 461
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEY+TY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYRTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKW 179
Query: 370 IRVMF 374
IR +F
Sbjct: 180 IRTLF 184
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 26 PVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
P +++IR+ +NFGPQHPAAHGVL L E++
Sbjct: 82 PSQRKIRHYTVNFGPQHPAAHGVLRLILELS 112
>gi|327195242|ref|YP_004339024.1| NADH dehydrogenase subunit 7 [Coccomyxa subellipsoidea C-169]
gi|325070738|gb|ADY75466.1| NADH dehydrogenase subunit 7 [Coccomyxa subellipsoidea C-169]
Length = 398
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 219/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++A+ HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 102 AQYIRVLFAEITRILNHLLALTCHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+PIGL +DIY F F++R+DE+E+MLT NR+W QR DVG+V+A+ AL++
Sbjct: 162 IRPGGVAQDLPIGLSEDIYRFARQFASRIDEMEEMLTNNRIWKQRLVDVGVVTADQALDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPYD Y +F +P+G+ G+ +I ++EMRQSLR++ Q
Sbjct: 222 GFSGVMLRGSGIGWDLRKTQPYDVYSKMDFQVPVGSRGDCYDRYLIRVEEMRQSLRMIMQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ +MP G +++DD KI+ PSRS+MK G+ VP G TYTAVEAPKGE
Sbjct: 282 CLQEMPQGLIKSDDRKITPPSRSQMKQSMESLIHHFKLYTEGFAVPAGETYTAVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT++PYRCKI+APGFAHL L+ + + LAD+V II
Sbjct: 342 FGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMARNHMLADVVTII 386
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMC E YSLAVE+LL E
Sbjct: 38 GEVVKRADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCQEHGYSLAVERLLGCE 97
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 98 VPLRAQYIRVLFA 110
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++I+N INFGPQHPAAHGVL L E+
Sbjct: 10 QKIKNFTINFGPQHPAAHGVLRLVLEMN 37
>gi|367044226|ref|XP_003652493.1| hypothetical protein THITE_2114055 [Thielavia terrestris NRRL 8126]
gi|346999755|gb|AEO66157.1| hypothetical protein THITE_2114055 [Thielavia terrestris NRRL 8126]
Length = 507
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 178/307 (57%), Positives = 218/307 (71%), Gaps = 30/307 (9%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 194 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 253
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIPIGLLDDIY + + F R+DE E+MLT+NR+WI R K VG+VSA DALN F+GVM
Sbjct: 254 HQDIPIGLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLKGVGVVSAADALNLSFTGVM 313
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK PYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 314 LRGSGVPWDIRKSAPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 373
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TYTA+EAPKGE GVY+V
Sbjct: 374 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLYTKGYAVPPGDTYTAIEAPKGEMGVYVV 433
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIGLLHRGTEKLIEYKTYT 330
SDG+ +PYR I+APGFAHLA + + KG LAD VA+I GT L+ + +
Sbjct: 434 SDGSERPYRVHIRAPGFAHLAGFDHVSKGHLLADAVAVI---------GTMDLV-FGKCS 483
Query: 331 QALPYFD 337
P+FD
Sbjct: 484 PLPPFFD 490
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 131 DPHVGLLHRGTEKLCEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKF 190
Query: 370 IRVMF 374
IR MF
Sbjct: 191 IRTMF 195
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++R+ +NFGPQHPAAHGVL L E+
Sbjct: 96 RKVRHYTVNFGPQHPAAHGVLRLILELN 123
>gi|328862441|gb|EGG11542.1| hypothetical protein MELLADRAFT_33293 [Melampsora larici-populina
98AG31]
Length = 469
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 173 LFGEITRVLNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 232
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + FS R+DE E++LTENR+W QRT +G V+ DALNYGFSGVM
Sbjct: 233 AFDLPHGLLDDIFTWATAFSHRIDEFEEVLTENRIWKQRTIGIGKVTVADALNYGFSGVM 292
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK +PYD Y+ EFDIP+G +G+ + ++E RQSLRI+ Q +NKMP
Sbjct: 293 LRGSGVPWDIRKSEPYDAYDQVEFDIPVGKNGDCYDRYLCRIEEFRQSLRIIHQCLNKMP 352
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G+++ DD K++ P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 353 AGQIKVDDYKLTPPPRASMKESMEALIHHFKLFSEGYNVPPGETYSAIEAPKGEMGVYLV 412
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PYRC+I+APGFAHLA + + + FL D+VAII
Sbjct: 413 SDGSNRPYRCRIRAPGFAHLAGADFMSRHHFLPDMVAII 451
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYK YTQALPYFDRLDYVSMM NE CYS AVEKLLNIEVP RAK+
Sbjct: 110 DPHVGLLHRGTEKLIEYKNYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPDRAKW 169
Query: 370 IRVMF 374
IR +F
Sbjct: 170 IRTLF 174
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+N +R+ +NFGPQHPAAHGVL L E+
Sbjct: 68 ENQTQKHGTMRHFTVNFGPQHPAAHGVLRLILEMN 102
>gi|326475647|gb|EGD99656.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Trichophyton
tonsurans CBS 112818]
Length = 473
Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 177 AKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 236
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV DIP+GLLDDIY + + F+ R+DE E++LT+NR+W RT VG+V+A +ALNY
Sbjct: 237 VRPGGVHQDIPLGLLDDIYQWATQFADRIDETEELLTDNRIWKARTVGVGVVTAAEALNY 296
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 297 GFSGVMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQ 356
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+NKMP G VR +D KIS P R M KGY VPPG TY+A+EAPKGE
Sbjct: 357 CLNKMPAGPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGE 416
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+LVSDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 417 MAVFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAII 461
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+ RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEISERAKW 179
Query: 370 IRVMF 374
IR MF
Sbjct: 180 IRTMF 184
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|367019636|ref|XP_003659103.1| hypothetical protein MYCTH_2295737 [Myceliophthora thermophila ATCC
42464]
gi|347006370|gb|AEO53858.1| hypothetical protein MYCTH_2295737 [Myceliophthora thermophila ATCC
42464]
Length = 489
Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 199 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 258
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI+R K VG+VSA DALN F+GVM
Sbjct: 259 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLKGVGVVSAADALNLSFTGVM 318
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 319 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 378
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 379 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVV 438
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHL + I +G LAD VA+I
Sbjct: 439 SDGSERPYRVHIRAPGFAHLGGFDHISRGHLLADAVAVI 477
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 60/66 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 136 DPHVGLLHRGTEKLCEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKF 195
Query: 370 IRVMFT 375
IR MF
Sbjct: 196 IRTMFA 201
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++R+ +NFGPQHPAAHGVL L E+
Sbjct: 100 DRKVRHYTVNFGPQHPAAHGVLRLILELN 128
>gi|326485519|gb|EGE09529.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Trichophyton equinum
CBS 127.97]
Length = 473
Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 177 AKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 236
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV DIP+GLLDDIY + + F+ R+DE E++LT+NR+W RT VG+V+A +ALNY
Sbjct: 237 VRPGGVHQDIPLGLLDDIYQWATQFADRIDETEELLTDNRIWKARTVGVGVVTAAEALNY 296
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 297 GFSGVMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQ 356
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+NKMP G VR +D KIS P R M KGY VPPG TY+A+EAPKGE
Sbjct: 357 CLNKMPAGPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGE 416
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+LVSDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 417 MAVFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAII 461
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 179
Query: 370 IRVMF 374
IR MF
Sbjct: 180 IRTMF 184
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|386800455|ref|YP_006280978.1| nad7 gene product (mitochondrion) [Helicosporidium sp. ex Simulium
jonesi]
gi|253807627|gb|ACT36205.1| NADH dehydrogenase subunit 7 [Helicosporidium sp. ex Simulium
jonesi]
Length = 398
Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 171/285 (60%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++A+ HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 102 AQYIRVLFAEITRILNHLLALTCHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV D+PIGL DIY F F++R+DE+E+MLT NR+W QR D+G+VSAE A+++
Sbjct: 162 VRPGGVTYDLPIGLSQDIYQFARQFASRIDEIEEMLTSNRIWKQRLVDIGVVSAEQAMSW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG +LR SGI WDLRK QPYD Y+ EFD+PIGT G+ +I ++EMRQSLRI+ Q
Sbjct: 222 GFSGALLRASGIAWDLRKTQPYDVYDQMEFDVPIGTRGDCYDRYLIRVEEMRQSLRIIMQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G +RTDD KI+ PSR EMK G+ VP G Y VEAPKGE
Sbjct: 282 CLNEMPNGIIRTDDHKITPPSRFEMKDSMEALIHHFKYYSQGFLVPAGEIYMGVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT +PYRCKI+APGFAHL L+ + + LAD+V I+
Sbjct: 342 FGVYLVSNGTHRPYRCKIRAPGFAHLQGLDFMARNHLLADVVTIV 386
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMMC EQ YSLAVE LLNIE
Sbjct: 38 GEVVQRCDPHIGLLHRGTEKLIEYKNYMQALPYFDRLDYVSMMCQEQAYSLAVENLLNIE 97
Query: 363 VPLRAKYIRVMFT 375
P RA+YIRV+F
Sbjct: 98 APKRAQYIRVLFA 110
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++N INFGPQHPAAHGVL L E+
Sbjct: 11 KLQNFTINFGPQHPAAHGVLRLVLEMN 37
>gi|9695385|ref|NP_037607.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|334701711|ref|YP_004564244.1| NADH dehydrogenase subunit 7 [Phytophthora phaseoli]
gi|334701752|ref|YP_004564310.1| NADH dehydrogenase subunit 7 [Phytophthora andina]
gi|336287224|ref|YP_004564449.1| NADH dehydrogenase subunit 7 [Phytophthora ipomoeae]
gi|6692638|gb|AAF24781.1|U17009_13 NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|58012143|gb|AAW62551.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|58201982|gb|AAW67037.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|58202029|gb|AAW67083.1| NADH dehydrogenase subunit 7 [Phytophthora infestans]
gi|301505174|gb|ADK76218.1| NADH dehydrogenase subunit 7 [Phytophthora phaseoli]
gi|301505215|gb|ADK76258.1| NADH dehydrogenase subunit 7 [Phytophthora andina]
gi|301505256|gb|ADK76298.1| NADH dehydrogenase subunit 7 [Phytophthora ipomoeae]
Length = 392
Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 172/285 (60%), Positives = 215/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++AV HALDVGAMTP+FW FEEREK+MEFYER SGARMHAAY
Sbjct: 96 AQYIRVLFSEITRILNHLLAVCCHALDVGAMTPYFWGFEEREKLMEFYERVSGARMHAAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DIY F F+ RLDE+E+MLT NR+W QR D+GIVSA+DALN
Sbjct: 156 FRPGGVNQDLPKGLLNDIYIFCDQFNTRLDEIEEMLTNNRIWKQRLVDIGIVSAKDALNL 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ Y+ +FDIP+GT+G+ +I ++EMRQS+RI+ Q
Sbjct: 216 GFSGVMLRGSGISWDLRKTQPYEIYDQLDFDIPVGTNGDCYDRYLIRIEEMRQSIRIILQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NK+P G ++ DD KI+ P+R ++K + G TYT +EAPKGE
Sbjct: 276 ILNKIPNGPIKLDDKKITNPNRIQIKNSMESLIHHFKYYSENISINSGETYTVIEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+GVYLVSDGT+KPYRCKIK+PGF HL AL+ + K +AD+V II
Sbjct: 336 YGVYLVSDGTNKPYRCKIKSPGFLHLQALDFLAKNHMIADVVTII 380
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V D HIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMMC E Y LA+EKLLN +
Sbjct: 32 GEVVQKADSHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMCQEHAYVLAIEKLLNCD 91
Query: 363 VPLRAKYIRVMFT 375
+PLRA+YIRV+F+
Sbjct: 92 IPLRAQYIRVLFS 104
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+I+N INFGPQHPAAHGVL L E+
Sbjct: 4 KKIKNFSINFGPQHPAAHGVLRLILELN 31
>gi|327297238|ref|XP_003233313.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
118892]
gi|326464619|gb|EGD90072.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Trichophyton rubrum
CBS 118892]
Length = 473
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 177 AKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 236
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV DIP+GLLDDIY + + F+ R+DE E++LT+NR+W RT VG+V+A +ALNY
Sbjct: 237 VRPGGVHQDIPLGLLDDIYQWATQFADRIDETEELLTDNRIWKARTVGVGVVTAAEALNY 296
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WD+RK QPYD Y EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 297 GFSGVMLRGSGVPWDIRKSQPYDAYGQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQ 356
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+NKMP G VR +D KIS P R M KGY VPPG TY+A+EAPKGE
Sbjct: 357 CLNKMPAGPVRVEDYKISPPPRIAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGE 416
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+LVSDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 417 MAVFLVSDGSERPYRCKIRAPGFAHLGCFDQLSRGHLLADAVAII 461
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 179
Query: 370 IRVMF 374
IR MF
Sbjct: 180 IRTMF 184
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 85 RKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|412994379|emb|CCO13955.1| NADH dehydrogenase subunit 7 [Bathycoccus prasinos]
Length = 398
Score = 363 bits (931), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 167/285 (58%), Positives = 217/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++A+ HA+DVGA+TPF W FEEREK+MEFYER SGAR HAAY
Sbjct: 102 AQYIRVLFAEITRILNHLLALSCHAMDVGALTPFLWAFEEREKLMEFYERVSGARFHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P GL DD++ F TF++R+DE+E+MLT NR+W QR D+G V+A++A+ +
Sbjct: 162 IRPGGVAQDLPQGLCDDLHKFCQTFASRIDEMEEMLTNNRIWKQRLVDIGTVTADEAIQW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK QPYD Y + +FDIP+GT G+ +I ++EMRQSL+++ +
Sbjct: 222 GFSGVMLRGSGVSWDLRKTQPYDVYSDLQFDIPVGTQGDCYDRYLIRIEEMRQSLKLIAE 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NK+P G ++ DD KI+ PS+S +K G+ VP TYTAVEAPKGE
Sbjct: 282 CLNKLPQGPIKVDDRKITPPSKSHVKESMESLIHHFKLYTEGFVVPASETYTAVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT+KPYRCKI+APGF HL AL+ + K LAD+V II
Sbjct: 342 FGVYLVSNGTNKPYRCKIRAPGFVHLQALDFMAKKHLLADVVTII 386
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVS M E YSL VEKLL+ +
Sbjct: 38 GEIVERADPHIGLLHRGTEKLIEYKNYMQALPYFDRLDYVSTMAQEHGYSLTVEKLLHCQ 97
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 98 VPLRAQYIRVLFA 110
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+ +N +NFGPQHPAAHGVL L E+
Sbjct: 10 KKFKNFTLNFGPQHPAAHGVLRLILEMN 37
>gi|317146852|ref|XP_001821713.2| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
Length = 521
Score = 363 bits (931), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F E+TRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 231 MFGEMTRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 290
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ DIP+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+VSA DALN F+GVM
Sbjct: 291 SQDIPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVM 350
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 351 LRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 410
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D K+S P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 411 AGPVKVEDYKLSPPPRAAMKENMEALIHHFLLFSKGYAVPPGETYSAIEAPKGEMGVFLV 470
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 471 SDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAII 509
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQCYSLAVEKLLNIE+P RAKY
Sbjct: 168 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIEIPDRAKY 227
Query: 370 IRVMF 374
IR MF
Sbjct: 228 IRTMF 232
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V ++IR+ +NFGPQHPAAHGVL L EI
Sbjct: 131 VGRKIRHYTVNFGPQHPAAHGVLRLILEIN 160
>gi|212530120|ref|XP_002145217.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210074615|gb|EEA28702.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 474
Score = 363 bits (931), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 184 LFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+VSA DALN F+GVM
Sbjct: 244 SQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 304 LRGSGVPWDVRKSQPYDAYDQVEFDVPVGMNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV++V
Sbjct: 364 AGPVKVEDYKISPPPRAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMGVFVV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 424 SDGSERPYRCKIRAPGFAHLGGFDQVARGHLLADAVAII 462
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNI++P RAK+
Sbjct: 121 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIDIPERAKW 180
Query: 370 IRVMF 374
IR +F
Sbjct: 181 IRTLF 185
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 86 RKIRHYTVNFGPQHPAAHGVLRLILELN 113
>gi|358391590|gb|EHK40994.1| hypothetical protein TRIATDRAFT_85167 [Trichoderma atroviride IMI
206040]
Length = 476
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/279 (61%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 186 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 245
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIPIGLLDDIY + + F R+DE E+MLT+NR+WI+R + VG+VSA DALN F+GVM
Sbjct: 246 HQDIPIGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVSAADALNLSFTGVM 305
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ EFD+P+GT+G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 306 LRGSGIPFDVRKNQPYDAYDKVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIFQCLNQMP 365
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 366 AGPVRVEDYKISPPPRTAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVYVV 425
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRC I+APGFAHL + + KG LAD VA+I
Sbjct: 426 SDGSERPYRCHIRAPGFAHLGGFDHVAKGHLLADAVALI 464
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC++LAVEKLLNIE+P RAKY
Sbjct: 123 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKY 182
Query: 370 IRVMF 374
IR +F
Sbjct: 183 IRTLF 187
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 7 YPDKEET---KWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+P K E+ + DN V +++R+ +NFGPQHPAAHGVL L E++
Sbjct: 64 FPSKSESGAPESTAQQPRDNSVE-HRKVRHYTVNFGPQHPAAHGVLRLILELS 115
>gi|145232479|ref|XP_001399684.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
513.88]
gi|134056601|emb|CAK47676.1| unnamed protein product [Aspergillus niger]
gi|350634565|gb|EHA22927.1| hypothetical protein ASPNIDRAFT_206795 [Aspergillus niger ATCC
1015]
Length = 476
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF E+TRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 186 LFGEMTRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 245
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+V A DALN F+GVM
Sbjct: 246 SQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVKAADALNMSFTGVM 305
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 306 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 365
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 366 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLV 425
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 426 SDGSERPYRCKIRAPGFAHLGGFDQVSRGHLLADAVAII 464
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYK+Y QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAKY
Sbjct: 123 DPHVGLLHRGTEKLIEYKSYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKY 182
Query: 370 IRVMF 374
IR +F
Sbjct: 183 IRTLF 187
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 88 RKIRHYTVNFGPQHPAAHGVLRLILELN 115
>gi|331217620|ref|XP_003321488.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
[Puccinia graminis f. sp. tritici CRL 75-36-700-3]
gi|309300478|gb|EFP77069.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
[Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 482
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 213/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+MA+ THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 192 MFGEITRILNHLMAILTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 251
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDIY + + FS R+DE E++LTENR+W +RT +G VS DALNYGFSGVM
Sbjct: 252 AFDLPHGLLDDIYIWATAFSDRVDEFEEVLTENRIWKERTIGIGKVSVNDALNYGFSGVM 311
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + +E RQSLRI+ Q +NKMP
Sbjct: 312 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGKNGDCYDRYLCRTEEFRQSLRIIHQCLNKMP 371
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G+++ DD K++ P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 372 AGQIKVDDYKLTPPPRATMKESMEALIHHFKLFSEGYNVPPGETYSAIEAPKGEMGVYLV 431
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PYRC+I+APGFAHLA + + + FL D+VAII
Sbjct: 432 SDGSNRPYRCRIRAPGFAHLAGADFMSRHHFLPDMVAII 470
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYK YTQALPYFDRLDYVSMM NE CYS AVEKLLNIEVP RAK+
Sbjct: 129 DPHIGLLHRGTEKLIEYKNYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPDRAKW 188
Query: 370 IRVMF 374
IR MF
Sbjct: 189 IRTMF 193
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEIT 56
+R+ +NFGPQHPAAHGVL + E+
Sbjct: 96 MRHFTVNFGPQHPAAHGVLRMILEMN 121
>gi|358365561|dbj|GAA82183.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Aspergillus kawachii
IFO 4308]
Length = 476
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF E+TRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 186 LFGEMTRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 245
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+V A DALN F+GVM
Sbjct: 246 SQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVKAADALNMSFTGVM 305
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 306 LRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 365
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 366 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLV 425
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 426 SDGSERPYRCKIRAPGFAHLGGFDQVSRGHLLADAVAII 464
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYK+Y QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAKY
Sbjct: 123 DPHVGLLHRGTEKLIEYKSYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKY 182
Query: 370 IRVMF 374
IR +F
Sbjct: 183 IRTLF 187
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 88 RKIRHYTVNFGPQHPAAHGVLRLILELN 115
>gi|340520517|gb|EGR50753.1| predicted protein [Trichoderma reesei QM6a]
Length = 474
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 184 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIPIGLLDDIY + + F R+DE E+MLT+NR+WI+R + VG+VSA DALN F+GVM
Sbjct: 244 HQDIPIGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVSAADALNLSFTGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ +D+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 304 LRGSGVPFDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 364 AGPVRVEDYKISPPPRTAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVYVV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRC I+APGFAHL + + KG LAD VA+I
Sbjct: 424 SDGSERPYRCHIRAPGFAHLGGFDHVAKGHLLADAVALI 462
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAKY
Sbjct: 121 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKY 180
Query: 370 IRVMF 374
IR +F
Sbjct: 181 IRTLF 185
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++R+ +NFGPQHPAAHGVL L E++
Sbjct: 86 RKVRHYTVNFGPQHPAAHGVLRLILELS 113
>gi|238496957|ref|XP_002379714.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus flavus NRRL3357]
gi|83769576|dbj|BAE59711.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694594|gb|EED50938.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Aspergillus flavus NRRL3357]
gi|391867774|gb|EIT77014.1| ubiquinone oxidoreductase, NDUFS2/49 kDa subunit [Aspergillus
oryzae 3.042]
Length = 476
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F E+TRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 186 MFGEMTRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 245
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ DIP+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+VSA DALN F+GVM
Sbjct: 246 SQDIPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVM 305
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 306 LRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 365
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D K+S P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 366 AGPVKVEDYKLSPPPRAAMKENMEALIHHFLLFSKGYAVPPGETYSAIEAPKGEMGVFLV 425
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 426 SDGSERPYRCKIRAPGFAHLGGFDQISRGHLLADAVAII 464
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQCYSLAVEKLLNIE+P RAKY
Sbjct: 123 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIEIPDRAKY 182
Query: 370 IRVMF 374
IR MF
Sbjct: 183 IRTMF 187
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V ++IR+ +NFGPQHPAAHGVL L EI
Sbjct: 86 VGRKIRHYTVNFGPQHPAAHGVLRLILEIN 115
>gi|322693271|gb|EFY85137.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Metarhizium acridum
CQMa 102]
Length = 470
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 180 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 239
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI+R + VG+VSA DALN F+GVM
Sbjct: 240 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVSAADALNLSFTGVM 299
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 300 LRGSGVPWDIRKSQPYDAYDKVEFDVPVGKNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 359
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+ +EAPKGE GVY+V
Sbjct: 360 AGPVRVEDYKISPPPRTAMKENMEALIHHFLLYTKGYAVPPGETYSVIEAPKGEMGVYVV 419
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRC I+APGFAHL + + KG LAD VA+I
Sbjct: 420 SDGSERPYRCHIRAPGFAHLGGFDHVSKGHLLADAVAVI 458
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYK+Y QALPYFDRLDYVSMM NEQC++LAVEKLLNIE+P RAKY
Sbjct: 117 DPHVGLLHRGTEKLIEYKSYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKY 176
Query: 370 IRVMF 374
IR MF
Sbjct: 177 IRTMF 181
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++R+ +NFGPQHPAAHGVL L E+
Sbjct: 81 DRKVRHYTVNFGPQHPAAHGVLRLILELN 109
>gi|425767888|gb|EKV06439.1| hypothetical protein PDIP_78810 [Penicillium digitatum Pd1]
gi|425769701|gb|EKV08187.1| hypothetical protein PDIG_69520 [Penicillium digitatum PHI26]
Length = 473
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 213/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F+EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 183 MFSEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 242
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ DIPIGLLDDIY + + F R+DE E+MLT+NR+W RT+ VG+++A DALN F+GVM
Sbjct: 243 SQDIPIGLLDDIYQWATQFGDRIDETEEMLTDNRIWKARTQGVGVINATDALNMSFTGVM 302
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ +D+RK QPYD Y+ EFD+P+G +G+ + ++E RQSLRI+ Q +NKMP
Sbjct: 303 LRGSGVPFDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRIEEFRQSLRIIHQCLNKMP 362
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 363 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYSVPPGETYSAIEAPKGEMGVFLV 422
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 423 SDGSERPYRCKIRAPGFAHLGGFDQVSRGHLLADAVAII 461
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 179
Query: 370 IRVMFT 375
IR MF+
Sbjct: 180 IRTMFS 185
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ ++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 83 INRKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|255933141|ref|XP_002558041.1| Pc12g12260 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582660|emb|CAP80853.1| Pc12g12260 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 473
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF E+TR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 183 LFGEMTRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 242
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ DIPIGLLDDIY + + F R+DE E++LT+NR+W RT+ VG+V+A DALN F+GVM
Sbjct: 243 SQDIPIGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVNATDALNMSFTGVM 302
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ +D+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 303 LRGSGVPYDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 362
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 363 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLFTKGYSVPPGETYSAIEAPKGEMGVFLV 422
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 423 SDGSERPYRCKIRAPGFAHLGGFDQVSRGHLLADAVAII 461
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPDRAKW 179
Query: 370 IRVMF 374
IR +F
Sbjct: 180 IRTLF 184
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 83 IDRKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|259487822|tpe|CBF86800.1| TPA: hypothetical protein similar to NADH-ubiquinone oxidoreductase
49 kDa subunit, mitochondrial precursor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 475
Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 185 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 244
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+VSA DALN F+GVM
Sbjct: 245 SQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVM 304
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 305 LRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 364
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KI P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 365 AGPVRVEDYKIMPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFLV 424
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 425 SDGSERPYRCKIRAPGFAHLGGFDQIARGHLLADAVAII 463
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYK+Y QALPYFDRLDYVSMM NEQCYSLAVEKLLNIE+P RAKY
Sbjct: 122 DPHVGLLHRGTEKLIEYKSYFQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKY 181
Query: 370 IRVMF 374
IR MF
Sbjct: 182 IRTMF 186
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V ++IR+ +NFGPQHPAAHGVL L EI
Sbjct: 85 VGRKIRHYTVNFGPQHPAAHGVLRLILEIN 114
>gi|400599247|gb|EJP66951.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Beauveria bassiana
ARSEF 2860]
Length = 474
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+H+AYVRPGGV
Sbjct: 184 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI+R + VG++ A +A+N F+GVM
Sbjct: 244 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVLPAREAINLSFTGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+GT+G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 304 LRGSGVPWDIRKSQPYDAYDKVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 364 AGPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVYVV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRC I+APGFAHL + + KG LAD VA+I
Sbjct: 424 SDGSERPYRCHIRAPGFAHLGGFDHVAKGHLLADAVAVI 462
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC++LAVEKLLN+E+P RAKY
Sbjct: 121 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPDRAKY 180
Query: 370 IRVMF 374
IR +F
Sbjct: 181 IRTLF 185
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++R+ +NFGPQHPAAHGVL L E+
Sbjct: 85 DRKVRHYTVNFGPQHPAAHGVLRLILELN 113
>gi|67523917|ref|XP_660018.1| hypothetical protein AN2414.2 [Aspergillus nidulans FGSC A4]
gi|40745369|gb|EAA64525.1| hypothetical protein AN2414.2 [Aspergillus nidulans FGSC A4]
Length = 468
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 178 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+VSA DALN F+GVM
Sbjct: 238 SQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 298 LRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 357
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KI P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 358 AGPVRVEDYKIMPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFLV 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL ++I +G LAD VAII
Sbjct: 418 SDGSERPYRCKIRAPGFAHLGGFDQIARGHLLADAVAII 456
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYK+Y QALPYFDRLDYVSMM NEQCYSLAVEKLLNIE+P RAKY
Sbjct: 115 DPHVGLLHRGTEKLIEYKSYFQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKY 174
Query: 370 IRVMF 374
IR MF
Sbjct: 175 IRTMF 179
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V ++IR+ +NFGPQHPAAHGVL L EI
Sbjct: 78 VGRKIRHYTVNFGPQHPAAHGVLRLILEIN 107
>gi|322708966|gb|EFZ00543.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Metarhizium
anisopliae ARSEF 23]
Length = 468
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 180 LFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 239
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI+R + VG+VSA DALN F+GVM
Sbjct: 240 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVSAADALNLSFTGVM 299
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 300 LRGSGVPWDIRKSQPYDAYDKVEFDVPVGKNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 359
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D K+S P R+ M KGY VPPG TY+ +EAPKGE GVY+V
Sbjct: 360 AGPVRVEDYKVSPPPRTAMKENMEALIHHFLLYTKGYAVPPGETYSVIEAPKGEMGVYVV 419
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRC I+APGFAHL + + KG LAD VA+I
Sbjct: 420 SDGSERPYRCHIRAPGFAHLGGFDHVSKGHLLADAVAVI 458
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYK+Y QALPYFDRLDYVSMM NEQC++LAVEKLLNIE+P RAKY
Sbjct: 117 DPHVGLLHRGTEKLIEYKSYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKY 176
Query: 370 IRVMF 374
IR +F
Sbjct: 177 IRTLF 181
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++R+ +NFGPQHPAAHGVL L E+
Sbjct: 81 DRKVRHYTVNFGPQHPAAHGVLRLILELN 109
>gi|242819539|ref|XP_002487339.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218713804|gb|EED13228.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 474
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 184 MFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+VSA DALN F+GVM
Sbjct: 244 SQDLPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVSAADALNMSFTGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 304 LRGSGVPWDVRKSQPYDAYDQVEFDVPVGMNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV++V
Sbjct: 364 AGPVKVEDYKISPPPRAAMKENMEALIHHFLLFTKGYTVPPGETYSAIEAPKGEMGVFIV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI++PGFAHL +++ +G LAD VAII
Sbjct: 424 SDGSERPYRCKIRSPGFAHLGGFDQVSRGHLLADAVAII 462
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQCYSLAVEKLLNIE+P RAK+
Sbjct: 121 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIEIPERAKW 180
Query: 370 IRVMF 374
IR MF
Sbjct: 181 IRTMF 185
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 86 RKIRHYTVNFGPQHPAAHGVLRLILELN 113
>gi|342874389|gb|EGU76403.1| hypothetical protein FOXB_13081 [Fusarium oxysporum Fo5176]
Length = 468
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 178 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI+R + VG+V A +ALN F+GVM
Sbjct: 238 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVPATEALNLSFTGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ +D+RK QPYD Y+ EFD+P+GT+G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 298 LRGSGVPFDVRKNQPYDAYDQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 357
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D K+S P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 358 AGPVRVEDYKVSPPPRSAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVYVV 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRC I+APGFAHL + + KG LAD VA+I
Sbjct: 418 SDGSERPYRCHIRAPGFAHLGGFDHVSKGHLLADAVAVI 456
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 115 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKF 174
Query: 370 IRVMF 374
IR +F
Sbjct: 175 IRTLF 179
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++R+ +NFGPQHPAAHGVL L E+
Sbjct: 79 DRKVRHYTVNFGPQHPAAHGVLRLILELN 107
>gi|323398679|ref|YP_004222754.1| NADH dehydrogenase subunit 7 [Glaucocystis nostochinearum]
gi|321401372|gb|ADW83126.1| NADH dehydrogenase subunit 7 [Glaucocystis nostochinearum]
Length = 399
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 174/285 (61%), Positives = 216/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++AV HALDVGA+TP FEEREK+MEFYER SGARMHAAY
Sbjct: 103 AQWIRVIFLEITRILNHLLAVTCHALDVGALTPLLLGFEEREKLMEFYERVSGARMHAAY 162
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV+LD+PIGLLDDIY FI F+ ++DE+E++LT NR+W QR DVGIV+A++A +
Sbjct: 163 IRPGGVSLDVPIGLLDDIYLFIDQFTKKIDEIEELLTNNRIWKQRLVDVGIVTADEAQAW 222
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK QPY+ Y +F+IPIGT G+ +I M+EMRQS I+ Q
Sbjct: 223 GFSGVMLRGSGVVWDLRKSQPYETYNLTDFNIPIGTKGDCYDRYLIRMEEMRQSTSIINQ 282
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
AIN +P G ++ DD KI+ PSR+E+K GY VP G TYTAVEAPKGE
Sbjct: 283 AINLIPIGNIKVDDRKITPPSRTELKQSMESLIHHFKLYSEGYSVPFGETYTAVEAPKGE 342
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG+YL++DGT++PYRCKIKAPGFAHL L + KG LAD+V II
Sbjct: 343 FGIYLIADGTNRPYRCKIKAPGFAHLQGLNMMSKGHMLADVVTII 387
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 61/72 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+K+Y QALPYFDRLDYVSMM E YSLAVEKLL +
Sbjct: 39 GEVVERADPHIGLLHRGTEKLIEHKSYLQALPYFDRLDYVSMMAQEHAYSLAVEKLLGCK 98
Query: 363 VPLRAKYIRVMF 374
VPLRA++IRV+F
Sbjct: 99 VPLRAQWIRVIF 110
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+K+ +N +NFGPQHPAAHGVL L E+
Sbjct: 10 KKEFKNFTMNFGPQHPAAHGVLRLVLELN 38
>gi|380488326|emb|CCF37452.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Colletotrichum
higginsianum]
Length = 473
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 183 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 242
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WIQR + VG+VSA +ALN F+GVM
Sbjct: 243 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIQRLQGVGVVSAAEALNLSFTGVM 302
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 303 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVRGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 362
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV++V
Sbjct: 363 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLYTKGYTVPPGETYSAIEAPKGEMGVFVV 422
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHLA + + KG LAD VA+I
Sbjct: 423 SDGSERPYRVHIRAPGFAHLAGFDHVSKGHMLADAVAVI 461
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQC++LAVEKLLN+E+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLCEYKTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKW 179
Query: 370 IRVMF 374
IR +F
Sbjct: 180 IRTLF 184
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 84 DRKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|358378087|gb|EHK15770.1| hypothetical protein TRIVIDRAFT_82504 [Trichoderma virens Gv29-8]
Length = 472
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR HAAYVRPGGV
Sbjct: 182 LFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARFHAAYVRPGGV 241
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIPIGLLDDIY + + F R+DE E+MLT+NR+WI+R + VG+VSA DALN F+GVM
Sbjct: 242 HQDIPIGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVSAADALNLSFTGVM 301
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ EFD+P+GT+G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 302 LRGSGIPYDIRKNQPYDAYDKVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 361
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KI+ P R+ M KGY VPPG TY+ +EAPKGE GV+LV
Sbjct: 362 AGPVRVEDYKIAPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSVMEAPKGEMGVFLV 421
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRC I+APGFAHL + + KG LAD VA+I
Sbjct: 422 SDGSERPYRCHIRAPGFAHLGGFDHVAKGHLLADAVALI 460
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC++LAVEKLLNIE+P RAKY
Sbjct: 119 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKY 178
Query: 370 IRVMF 374
IR +F
Sbjct: 179 IRTLF 183
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 21 NDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
DN V ++++R+ +NFGPQHPAAHGVL L E+T
Sbjct: 77 RDNSVE-DRKVRHYTVNFGPQHPAAHGVLRLILELT 111
>gi|336263010|ref|XP_003346287.1| hypothetical protein SMAC_05824 [Sordaria macrospora k-hell]
gi|380093616|emb|CCC08580.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 478
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LFAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 188 LFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
D+P+GLLDDIY + + F R+DE E+MLT+NR+WI R + +G+VSA DALN F+GVM
Sbjct: 248 HQDLPLGLLDDIYQWATQFGDRIDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 308 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 367
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 368 AGPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT +PYR I+APGFAHL + + +G LAD VA+I
Sbjct: 428 SDGTERPYRVHIRAPGFAHLGGFDHLSRGHMLADAVAVI 466
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 60/66 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EY+TY QALPYFDRLDYVSMM NEQC++LAVEKLLN+E+P RAK+
Sbjct: 125 DPHVGLLHRGTEKLCEYRTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKW 184
Query: 370 IRVMFT 375
IR +F
Sbjct: 185 IRTLFA 190
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +++R+ +NFGPQHPAAHGVL L E+
Sbjct: 88 LARKVRHYTVNFGPQHPAAHGVLRLILEL 116
>gi|115384346|ref|XP_001208720.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Aspergillus terreus NIH2624]
gi|114196412|gb|EAU38112.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Aspergillus terreus NIH2624]
Length = 475
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F E+TRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 187 MFGEMTRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 246
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ DIP+GLLDDIY + + F R+DE E++LT+NR+W RT+ VG+V+A DALN F+GVM
Sbjct: 247 SQDIPLGLLDDIYQWATQFGDRIDETEELLTDNRIWKARTQGVGVVNAADALNMSFTGVM 306
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 307 LRGSGVPWDIRKSQPYDAYDKVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 366
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV+LV
Sbjct: 367 AGPVKVEDYKISPPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLV 426
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL +++ +G LAD VAII
Sbjct: 427 SDGSERPYRCKIRAPGFAHLGGFDQVARGHLLADAVAII 465
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 103/181 (56%), Gaps = 24/181 (13%)
Query: 212 QSLRIVEQAINKMPGGEVRTDDMKISTPSR-SEMKGY------PVPPGATYTA----VEA 260
+ L + +IN+ R+ + S P R +E Y P P T+ A EA
Sbjct: 14 KRLGLRPSSINRHTTAVPRSRSITTSLPRRYAEPTSYQATRLIPTDPTFTHLANKGTAEA 73
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAA-------LEKIGKGSFLADIVAIIDPHI 313
P+ G+ +G + R G H AA LE G+ +IV DPH+
Sbjct: 74 PEVAAGLESEDEGVGRKIRHYTVNFGPQHPAAHGVLRLILELNGE-----EIVRS-DPHV 127
Query: 314 GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVM 373
GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAKYIR M
Sbjct: 128 GLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKYIRTM 187
Query: 374 F 374
F
Sbjct: 188 F 188
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V ++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 87 VGRKIRHYTVNFGPQHPAAHGVLRLILELN 116
>gi|38638286|ref|NP_943678.1| NADH dehydrogenase subunit 7 [Chara vulgaris]
gi|385153414|ref|YP_006073014.1| nad7 gene product (mitochondrion) [Nitella hyalina]
gi|32966600|gb|AAP92183.1| NADH dehydrogenase subunit 7 [Chara vulgaris]
gi|335354145|gb|AEH42832.1| NADH dehydrogenase subunit 7 (mitochondrion) [Nitella hyalina]
Length = 393
Score = 361 bits (926), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 165/285 (57%), Positives = 215/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 97 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 156
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL +D++ F F++R+DEVE+MLT NR+W QR D+G V+A+ A+++
Sbjct: 157 IRPGGVAQDLPLGLSEDLFLFSQQFASRIDEVEEMLTNNRIWKQRLVDIGTVTAQQAMDW 216
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y+ EFD+P+GT G+ + ++EMRQSLRI+ Q
Sbjct: 217 GFSGVMLRGSGVSWDLRKAAPYDVYDKVEFDVPVGTRGDCYDRYCVRIEEMRQSLRIIVQ 276
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS+MK G VP +TYT VEAPKGE
Sbjct: 277 CLNQMPSGMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGVSVPASSTYTCVEAPKGE 336
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 337 FGVYLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 381
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVEKL N E
Sbjct: 33 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLCNCE 92
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 93 VPLRAQYIRVLFC 105
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
KQI+N+ NFGPQHPAAHGVL L E+
Sbjct: 5 KQIKNLTFNFGPQHPAAHGVLRLVLEMN 32
>gi|345566661|gb|EGX49603.1| hypothetical protein AOL_s00078g92 [Arthrobotrys oligospora ATCC
24927]
Length = 496
Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 214/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF E+TR+ NH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 197 AKWIRTLFGELTRVRNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAY 256
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV DIPIGLLDDIY + + F R+DEVE++LT++ +W RT+ VGIV A++ALNY
Sbjct: 257 VRPGGVHQDIPIGLLDDIYQWATQFGDRIDEVEELLTDSPIWKSRTQGVGIVGAQEALNY 316
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVMLRGSGI WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 317 SFSGVMLRGSGIPWDIRKSQPYDAYDQVEFDVPVGLNGDCYDRYLCRMEEFRQSLRIIHQ 376
Query: 220 AINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGE 264
+NKMP G VRT+D K++ P R+ M KGY VP G TYTA+EAPKGE
Sbjct: 377 CLNKMPPGPVRTEDYKVTPPPRAAMKENMEALIHHFLLYTKGYTVPAGETYTAIEAPKGE 436
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVY+VSDGT +PYRCKI+APGFAHL + +++ +G LAD VA+I
Sbjct: 437 MGVYVVSDGTERPYRCKIRAPGFAHLGSFDQVCRGHLLADAVAVI 481
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQ ++LAVEKLLNIEVP RAK+
Sbjct: 140 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQVFALAVEKLLNIEVPDRAKW 199
Query: 370 IRVMF 374
IR +F
Sbjct: 200 IRTLF 204
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 105 RKIRHYTVNFGPQHPAAHGVLRLILELN 132
>gi|320592151|gb|EFX04590.1| NADH-ubiquinone oxidoreductase [Grosmannia clavigera kw1407]
Length = 497
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 208/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 207 LFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 266
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIPIGLLDDIY + + F RLDE E+MLT+NR+WI R + VG+VSA +ALN F+GVM
Sbjct: 267 HQDIPIGLLDDIYQWATQFGDRLDETEEMLTDNRIWINRLQGVGVVSAAEALNLSFTGVM 326
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 327 LRGSGVPWDIRKAQPYDAYDQVEFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 386
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G +R +D K+S P R M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 387 AGPIRVEDYKVSPPPRVAMKENMEALIHHFLLFTKGYTVPPGDTYSAIEAPKGEMGVYVV 446
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHLA + I +G LAD VAII
Sbjct: 447 SDGSERPYRVHIRAPGFAHLAGFDHISRGHLLADAVAII 485
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQC++LAVEKLLNIE+P RAKY
Sbjct: 144 DPHVGLLHRGTEKLCEYKTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPQRAKY 203
Query: 370 IRVMF 374
IR +F
Sbjct: 204 IRTLF 208
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++IR+ +NFGPQHPAAHGVL L EI
Sbjct: 109 RKIRHYTVNFGPQHPAAHGVLRLILEIN 136
>gi|91208870|ref|YP_539031.1| NADH dehydrogenase subunit 7 [Physcomitrella patens]
gi|11559309|dbj|BAB18862.1| NADH dehydrogenase [Physcomitrella patens]
gi|90991410|dbj|BAE93102.1| NADH dehydrogenase subunit 7 (mitochondrion) [Physcomitrella
patens]
Length = 393
Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 165/285 (57%), Positives = 215/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 97 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 156
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL +DI+ F F++R+DE+E+MLT NR+W QR D+G V+A+ AL++
Sbjct: 157 IRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDW 216
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 217 GFSGVMLRGSGVCWDLRKSAPYDVYNQLSFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQ 276
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS+MK G+ VP +TYTAVEAPKGE
Sbjct: 277 CLNQMPSGMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKGE 336
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 337 FGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 381
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVEKL N E
Sbjct: 33 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLCNCE 92
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 93 VPLRAQYIRVLFC 105
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
KQI+N +NFGPQHPAAHGVL L E+
Sbjct: 5 KQIKNFTLNFGPQHPAAHGVLRLVLEMN 32
>gi|384491717|gb|EIE82913.1| NADH-ubiquinone oxidoreductase [Rhizopus delemar RA 99-880]
Length = 459
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNHIMAV THA+DVGA+TPF W+FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 169 MFGEITRILNHIMAVMTHAMDVGALTPFLWMFEEREKLMEFYERVSGARMHAAYVRPGGV 228
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
ALDIP GLL+DI+ + + F R+DEVE++L+ NR+W RT+DVG+V+A++A ++ FSGV+
Sbjct: 229 ALDIPHGLLEDIHDWSAQFGDRIDEVEELLSANRIWQVRTRDVGVVTAQEAQDWSFSGVL 288
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
+RGSGIKWD+RKV PYD Y+ EFD+P+G +G+ + M+EMRQSLRI+ Q +NKMP
Sbjct: 289 VRGSGIKWDIRKVAPYDAYDQVEFDVPVGQNGDCYDRYLCRMEEMRQSLRIINQCVNKMP 348
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G ++TDD K++ P R+ MK GY VP G TYT +EAPKGEFGVYLV
Sbjct: 349 EGVIKTDDWKVTPPPRAAMKENMEALIHHFKLYSEGYSVPAGDTYTVIEAPKGEFGVYLV 408
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PYRCKI+APGF HL + + + L D+V II
Sbjct: 409 SDGSNRPYRCKIRAPGFTHLQGSDFMSRNHLLPDMVTII 447
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQ YSLAVEKLLNIEVP RAKY
Sbjct: 106 DPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQAYSLAVEKLLNIEVPERAKY 165
Query: 370 IRVMF 374
IR MF
Sbjct: 166 IRTMF 170
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E ++RN +NFGPQHPAAHGVL L E+
Sbjct: 70 ESRLRNFTVNFGPQHPAAHGVLRLILELN 98
>gi|384490628|gb|EIE81850.1| NADH-ubiquinone oxidoreductase [Rhizopus delemar RA 99-880]
Length = 448
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNHIMAV THA+DVGA+TPF W+FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 158 MFGEITRILNHIMAVMTHAMDVGALTPFLWMFEEREKLMEFYERVSGARMHAAYVRPGGV 217
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
ALDIP GLL+DI+ + + F R+DEVE++L+ NR+W RT+DVG+V+A++A ++ FSGV+
Sbjct: 218 ALDIPHGLLEDIHDWSAQFGDRIDEVEELLSANRIWQVRTRDVGVVTAQEAQDWSFSGVL 277
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
+RGSGIKWD+RKV PYD Y+ EFD+P+G +G+ + M+EMRQSLRI+ Q +NKMP
Sbjct: 278 VRGSGIKWDIRKVAPYDAYDQVEFDVPVGQNGDCYDRYLCRMEEMRQSLRIINQCVNKMP 337
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G ++TDD K++ P R+ MK GY VP G TYT +EAPKGEFGVYLV
Sbjct: 338 EGVIKTDDWKVTPPPRAAMKENMEALIHHFKLYSEGYSVPAGDTYTVIEAPKGEFGVYLV 397
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PYRCKI+APGF HL + + + L D+V II
Sbjct: 398 SDGSNRPYRCKIRAPGFTHLQGSDFMSRNHLLPDMVTII 436
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQ YSLAVEKLLNIEVP RAKY
Sbjct: 95 DPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQAYSLAVEKLLNIEVPERAKY 154
Query: 370 IRVMF 374
IR MF
Sbjct: 155 IRTMF 159
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E ++RN +NFGPQHPAAHGVL L E+
Sbjct: 59 ESRLRNFTVNFGPQHPAAHGVLRLILELN 87
>gi|46105501|ref|XP_380552.1| NUCM_NEUCR NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrial precursor (Complex I-49KD) (CI-49KD)
[Gibberella zeae PH-1]
gi|408400680|gb|EKJ79757.1| hypothetical protein FPSE_00037 [Fusarium pseudograminearum CS3096]
Length = 468
Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 178 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI+R + VG+V A +ALN F+GVM
Sbjct: 238 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIERLRGVGVVPAAEALNLSFTGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ +D+RK QPYD Y+ EFD+P+GT+G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 298 LRGSGVPFDVRKNQPYDAYDQVEFDVPVGTNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 357
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D K+S P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 358 AGPVRVEDYKVSPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVYVV 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRC I+APGFAHL + + KG LAD VA+I
Sbjct: 418 SDGSERPYRCHIRAPGFAHLGGFDHVSKGHLLADAVAVI 456
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 115 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKW 174
Query: 370 IRVMF 374
IR +F
Sbjct: 175 IRTLF 179
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++++R+ +NFGPQHPAAHGVL L E+
Sbjct: 79 DRKVRHYTVNFGPQHPAAHGVLRLILELN 107
>gi|429853399|gb|ELA28474.1| nadh-ubiquinone oxidoreductase 49 kda subunit [Colletotrichum
gloeosporioides Nara gc5]
Length = 474
Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 208/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 184 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WIQR + VG++SA +ALN F+GVM
Sbjct: 244 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIQRLQGVGVISAAEALNLSFTGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 304 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVRGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G +R +D KIS P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 364 AGPIRCEDYKISPPPRSAMKENMEALIHHFLLYTKGYTVPPGETYSAIEAPKGEMGVYVV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHL + + KG LAD VA+I
Sbjct: 424 SDGSERPYRVHIRAPGFAHLGGFDHVCKGHMLADAVAVI 462
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTYTQALPYFDRLDYVSMM NEQC++LAVEKLLN+E+P RAK+
Sbjct: 121 DPHVGLLHRGTEKLCEYKTYTQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPDRAKW 180
Query: 370 IRVMF 374
IR +F
Sbjct: 181 IRTLF 185
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++IR+ +NFGPQHPAAHGVL L EI
Sbjct: 85 DRKIRHYTVNFGPQHPAAHGVLRLILEIN 113
>gi|289065193|ref|YP_003434245.1| NADH dehydrogenase subunit 7 [Chattonella marina]
gi|288871905|dbj|BAI70592.1| NADH dehydrogenase subunit 7 [Chattonella marina]
Length = 397
Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 169/282 (59%), Positives = 214/282 (75%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA Y RP
Sbjct: 104 IRVLFCEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHAGYFRP 163
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+ D+P+GLLDDIY F F RLDE+E+MLT NR+W QR D+GIV+ ++A ++GFS
Sbjct: 164 GGVSQDLPLGLLDDIYLFSKQFVTRLDEMEEMLTTNRIWKQRLVDIGIVTKKEACDWGFS 223
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGS I WDLRK QPY+ Y+ EFD+PIG +G+ +I ++EMR+SL+I++Q +N
Sbjct: 224 GVMLRGSTISWDLRKNQPYEVYDKMEFDVPIGKNGDCYDRYLIRVQEMRESLKIIQQCLN 283
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
MP G ++ DD KI++PSR +MK G VP G TYT+ EAPKGEFGV
Sbjct: 284 NMPLGPIKLDDHKITSPSRLDMKQSMESLIHHFKLYTEGMIVPAGETYTSTEAPKGEFGV 343
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YL+S+GT++PYRCKIKAPGF HL AL+ + KG +AD+V II
Sbjct: 344 YLISNGTNRPYRCKIKAPGFGHLQALDFMSKGHMIADVVTII 385
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E Y L +EKLL
Sbjct: 37 GEVVDRADPHIGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMTQEHTYVLGIEKLLGCN 96
Query: 363 VPLRAKYIRVMFT 375
VP+R++YIRV+F
Sbjct: 97 VPIRSQYIRVLFC 109
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ + I+N INFGPQHPAAHGVL L E+
Sbjct: 7 LSRNIKNFTINFGPQHPAAHGVLRLVLELN 36
>gi|336464896|gb|EGO53136.1| NADH/ubiquinone oxidoreductase [Neurospora tetrasperma FGSC 2508]
Length = 478
Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 188 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI R + +G+VSA DALN F+GVM
Sbjct: 248 HQDIPLGLLDDIYMWATQFGDRIDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E+RQSLRI+ Q +NKMP
Sbjct: 308 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGINGDCYDRYLCRMEELRQSLRIIHQCLNKMP 367
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 368 AGPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHL + + +G LAD VA+I
Sbjct: 428 SDGSERPYRVHIRAPGFAHLGGFDHLSRGHMLADAVAVI 466
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 60/66 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EY+TY QALPYFDRLDYVSMM NEQC++LAVEKLLN+E+P RAK+
Sbjct: 125 DPHVGLLHRGTEKLCEYRTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKW 184
Query: 370 IRVMFT 375
IR MF
Sbjct: 185 IRTMFA 190
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +++R+ +NFGPQHPAAHGVL L E+
Sbjct: 88 LARKVRHYTVNFGPQHPAAHGVLRLILEL 116
>gi|124647855|gb|ABM06162.1| NADH dehydrogenase subunit 7 [Haplomitrium mnioides]
Length = 305
Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 217/287 (75%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA
Sbjct: 15 PRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHA 74
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
+Y+RPGGVA D+P+GL +DI+ F F++R+DE+E+MLT NR+W QR D+G V+A+ A+
Sbjct: 75 SYIRPGGVAQDLPLGLSEDIFLFTQQFASRIDELEEMLTNNRIWKQRLVDIGTVTAQQAV 134
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GFSGVMLRGSG+ WDLRK PYD Y+ +FD+P+GT G+ I ++EMRQS+RI+
Sbjct: 135 DWGFSGVMLRGSGVCWDLRKSAPYDVYDRLDFDVPVGTRGDCYDRYCIRIEEMRQSIRII 194
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +N+MP G ++ DD K+ PSRS+MK G VP +TYTAVEAPK
Sbjct: 195 MQCLNQMPSGVIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGVSVPASSTYTAVEAPK 254
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGV+LVS+GT++PYRCKI+APGFAHL L+ + K LAD+V I+
Sbjct: 255 GEFGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIL 301
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 351 YSLAVEKLLNIEVPLRAKYIRVMFT 375
YSLAVE+L N EVP RA+YIRV+F
Sbjct: 1 YSLAVERLCNCEVPPRAQYIRVLFC 25
>gi|310800370|gb|EFQ35263.1| NADH dehydrogenase [Glomerella graminicola M1.001]
Length = 473
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 208/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 183 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 242
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WIQR + +G+VSA +ALN F+GVM
Sbjct: 243 HQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIQRLQGIGVVSAAEALNLSFTGVM 302
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 303 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVRGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 362
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GV++V
Sbjct: 363 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFVV 422
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHL + + KG LAD VA+I
Sbjct: 423 SDGSERPYRVHIRAPGFAHLGGFDHVSKGHMLADAVAVI 461
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQC++LAVEKLLNIE+P RAK+
Sbjct: 120 DPHVGLLHRGTEKLCEYKTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPDRAKW 179
Query: 370 IRVMF 374
IR +F
Sbjct: 180 IRTLF 184
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 84 DRKIRHYTVNFGPQHPAAHGVLRLILELN 112
>gi|328775171|gb|AEB39980.1| NADH dehydrogenase subunit 7 [Funaria hygrometrica]
Length = 393
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 164/285 (57%), Positives = 215/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 97 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 156
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL +DI+ F F++R+DE+E+MLT NR+W QR D+G V+A+ AL++
Sbjct: 157 IRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDW 216
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVML+GSG+ WDLRK PYD Y FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 217 GFSGVMLKGSGVCWDLRKSAPYDVYNQLSFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQ 276
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS+MK G+ VP +TYTAVEAPKGE
Sbjct: 277 CLNQMPSGMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKGE 336
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 337 FGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 381
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY +ALPYFDRLDYVSMM E YSLAVEKL N E
Sbjct: 33 GEVVERAEPHIGLLHRGTEKLIEYKTYLRALPYFDRLDYVSMMAQEHAYSLAVEKLCNCE 92
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 93 VPLRAQYIRVLFC 105
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
KQI+N +NFGPQHPAAHGVL L E+
Sbjct: 5 KQIKNFTLNFGPQHPAAHGVLRLVLEMN 32
>gi|164427900|ref|XP_965665.2| NADH:ubiquinone oxidoreductase 49kD subunit [Neurospora crassa
OR74A]
gi|166204145|sp|P22142.2|NDUS2_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrial; AltName: Full=Complex I-49kD;
Short=CI-49kD; Flags: Precursor
gi|157071928|gb|EAA36429.2| NADH:ubiquinone oxidoreductase 49kD subunit [Neurospora crassa
OR74A]
Length = 478
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 188 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI R + +G+VSA DALN F+GVM
Sbjct: 248 HQDIPLGLLDDIYMWATQFGDRIDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 308 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 367
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 368 AGPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHL + + +G LAD VA+I
Sbjct: 428 SDGSERPYRVHIRAPGFAHLGGFDHLSRGHMLADAVAVI 466
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 60/66 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EY+TY QALPYFDRLDYVSMM NEQC++LAVEKLLN+E+P RAK+
Sbjct: 125 DPHVGLLHRGTEKLCEYRTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKW 184
Query: 370 IRVMFT 375
IR MF
Sbjct: 185 IRTMFA 190
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +++R+ +NFGPQHPAAHGVL L E+
Sbjct: 88 LARKVRHYTVNFGPQHPAAHGVLRLILEL 116
>gi|350297000|gb|EGZ77977.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
[Neurospora tetrasperma FGSC 2509]
Length = 478
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 188 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI R + +G+VSA DALN F+GVM
Sbjct: 248 HQDIPLGLLDDIYMWATQFGDRIDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 308 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 367
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 368 AGPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHL + + +G LAD VA+I
Sbjct: 428 SDGSERPYRVHIRAPGFAHLGGFDHLSRGHMLADAVAVI 466
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 60/66 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EY+TY QALPYFDRLDYVSMM NEQC++LAVEKLLN+E+P RAK+
Sbjct: 125 DPHVGLLHRGTEKLCEYRTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKW 184
Query: 370 IRVMFT 375
IR MF
Sbjct: 185 IRTMFA 190
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +++R+ +NFGPQHPAAHGVL L E+
Sbjct: 88 LARKVRHYTVNFGPQHPAAHGVLRLILEL 116
>gi|229315929|ref|YP_002860155.1| NADH dehydrogenase subunit 7 [Micromonas sp. RCC299]
gi|226431214|gb|ACO55619.1| NADH dehydrogenase subunit 7 [Micromonas sp. RCC299]
Length = 398
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 164/285 (57%), Positives = 214/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 102 AQYIRVLFCEITRILNHLLALSCHAMDVGALTPFLWAFEEREKLMEFYERVSGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV+ D+P+G DD++ F F++R+DE+E+MLT NR+W QR D+G+V+A++A+ +
Sbjct: 162 IRPGGVSQDLPLGFCDDVHVFCQHFASRIDEMEEMLTNNRIWKQRLVDIGVVTADEAMQW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK QPYD Y FDIP+G+ G+ +I ++EMRQSLR++ +
Sbjct: 222 GFSGVMLRGSGVAWDLRKTQPYDVYNELAFDIPVGSRGDCYDRYLIRIEEMRQSLRLIME 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
IN +P G ++TDD KI+ PSR+ MK G+ VP TYTAVEAPKGE
Sbjct: 282 CINMLPEGTIKTDDRKITPPSRTHMKESMESLIHHFKLYTEGFVVPASETYTAVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+G++KPYRCKI+APGF HL L+ + K LAD+V II
Sbjct: 342 FGVYLVSNGSNKPYRCKIRAPGFVHLQGLDFMAKNHMLADVVTII 386
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMM E YSLAVEKLLN E
Sbjct: 38 GEVVERADPHIGLLHRGTEKLIEYKNYMQALPYFDRLDYVSMMAQEHAYSLAVEKLLNCE 97
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 98 VPLRAQYIRVLFC 110
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ K+++N +NFGPQHPAAHGVL L E+
Sbjct: 8 LSKKVKNFTLNFGPQHPAAHGVLRLVLEMN 37
>gi|15130888|emb|CAC48237.1| NADH dehydrogenase subunit 7 [Ulota crispa]
Length = 364
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 164/285 (57%), Positives = 215/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 76 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 135
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL +DI+ F F++R+DE+E+MLT NR+W QR D+G V+A+ AL++
Sbjct: 136 IRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDW 195
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 196 GFSGVMLRGSGVCWDLRKSAPYDVYNQLIFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQ 255
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS+MK G+ VP +TYTAVEAPKGE
Sbjct: 256 CLNQMPSGMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKGE 315
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT++PYRCKI+APGFAHL L+ + K L+D+V II
Sbjct: 316 FGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLSDVVTII 360
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLA EKL N E
Sbjct: 12 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAAEKLCNCE 71
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 72 VPLRAQYIRVLFC 84
>gi|346979357|gb|EGY22809.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Verticillium dahliae
VdLs.17]
Length = 472
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 182 LFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 241
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F RLDE E+MLT+NR+W+QR + VG+VSA +ALN F+G M
Sbjct: 242 HQDIPVGLLDDIYQWATQFGDRLDETEEMLTDNRIWLQRLQGVGVVSAAEALNLSFTGPM 301
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G G+ ++ M+E RQSLRI+ Q +NKMP
Sbjct: 302 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVRGDCYDRYLVRMEEFRQSLRIIHQCLNKMP 361
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D K+S P R+ M KGY VPPG TY+A+EAPKGE GV++V
Sbjct: 362 AGPVRVEDYKVSPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFVV 421
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHLA + + KG LAD VA+I
Sbjct: 422 SDGSERPYRVHIRAPGFAHLAGFDHVCKGHMLADAVAVI 460
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 119 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKW 178
Query: 370 IRVMF 374
IR +F
Sbjct: 179 IRTLF 183
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+K++R+ +NFGPQHPAAHGVL L EI
Sbjct: 83 DKKVRHYTVNFGPQHPAAHGVLRLILEIN 111
>gi|3048|emb|CAA38368.1| NADH dehydrogenase 49 kD subunit [Neurospora crassa]
Length = 478
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 208/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 188 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI R + +G+VSA DALN F+GVM
Sbjct: 248 HQDIPLGLLDDIYMWATQFGDRIDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 308 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 367
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P RS M KGY VPPG TY+A+E PKGE GVY+V
Sbjct: 368 AGPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEGPKGEMGVYVV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHL + + +G LAD VA+I
Sbjct: 428 SDGSERPYRVHIRAPGFAHLGGFDHLSRGHMLADAVAVI 466
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 60/66 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EY+TY QALPYFDRLDYVSMM NEQC++LAVEKLLN+E+P RAK+
Sbjct: 125 DPHVGLLHRGTEKLCEYRTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKW 184
Query: 370 IRVMFT 375
IR MF
Sbjct: 185 IRTMFA 190
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +++R+ +NFGPQHPAAHGVL L E+
Sbjct: 88 LARKVRHYTVNFGPQHPAAHGVLRLILEL 116
>gi|406606702|emb|CCH41926.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Wickerhamomyces
ciferrii]
Length = 474
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY RPGGV
Sbjct: 184 LFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYFRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F R+DE E++LT+NR+W QRT VGI++AEDA NYG SGVM
Sbjct: 244 SQDLPEGLLDDIYMWATQFGDRIDETEELLTDNRIWKQRTIGVGILTAEDAQNYGCSGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ +D+RK QPYD Y+ EFDIP+GT+G+ ++ M E RQSLRI+EQ N MP
Sbjct: 304 LRGSGVPYDIRKAQPYDAYDRVEFDIPVGTNGDCYDRYLVRMAEFRQSLRIIEQCCNDMP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P RS M KGY VP G Y +EAPKGE GVYLV
Sbjct: 364 PGAVKVEDYKISPPPRSLMKEDMEALIHHFLLFTKGYAVPQGEAYVPIEAPKGEMGVYLV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PY+CKI+APGFAHLAA + + +G+ LAD VAII
Sbjct: 424 SDGSERPYKCKIRAPGFAHLAAFDHVARGNLLADAVAII 462
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 57/65 (87%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHR TEKLIE KTY QALPYFDRLDYVSMM NE +++A EKLLN+E+PLRAKY
Sbjct: 121 DPHIGLLHRATEKLIESKTYLQALPYFDRLDYVSMMTNELSFAIATEKLLNVELPLRAKY 180
Query: 370 IRVMF 374
IR +F
Sbjct: 181 IRTLF 185
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IR+ +NFGPQHPAAHGVL L E+
Sbjct: 87 KIRHFTVNFGPQHPAAHGVLRLILEL 112
>gi|393213123|gb|EJC98620.1| NADH dehydrogenase I, D subunit [Fomitiporia mediterranea MF3/22]
Length = 477
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 187 LFGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 246
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DI+ + + FS+R+DE+E+++T NR+W QRT +G V+A++A++Y FSGVM
Sbjct: 247 AFDLPHGLLNDIFQWATQFSSRVDEIEEVVTGNRIWKQRTVGIGTVTAKEAMDYSFSGVM 306
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+KWDLRKV PYD Y+ EFDIP+G +G+ + ++E R+SLRI++Q +NKMP
Sbjct: 307 LRGSGVKWDLRKVAPYDKYDEVEFDIPVGKNGDCYDRYLCRVQEFRESLRIIDQCLNKMP 366
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G ++ DD K+ P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 367 TGAIKVDDHKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMGVYLV 426
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PYRCKI+APGFAHL + I + LAD VAII
Sbjct: 427 SDGSNRPYRCKIRAPGFAHLGGSDFIMRHHMLADAVAII 465
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE+KTYTQALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RAK+
Sbjct: 124 DPHIGLLHRGTEKLIEFKTYTQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKW 183
Query: 370 IRVMF 374
IR +F
Sbjct: 184 IRTLF 188
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
Q+R+ +NFGPQHPAAHGVL L E+
Sbjct: 89 SQMRHFTVNFGPQHPAAHGVLRLILELN 116
>gi|171696334|ref|XP_001913091.1| hypothetical protein [Podospora anserina S mat+]
gi|170948409|emb|CAP60573.1| unnamed protein product [Podospora anserina S mat+]
Length = 512
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 169/282 (59%), Positives = 209/282 (74%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ LF EITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRP
Sbjct: 219 IRTLFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRP 278
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DIP+GLLDDIY + + F R+DE E+MLT+NR+WI R K VG+VSA +A+N F+
Sbjct: 279 GGVHQDIPMGLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLKGVGVVSAAEAINLSFT 338
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSG+ +D+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +N
Sbjct: 339 GVMLRGSGVPFDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLN 398
Query: 223 KMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGV 267
KMP G VR +D KIS P RS M KGY VPPG TY+A+EAPKGE GV
Sbjct: 399 KMPAGPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGV 458
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
Y+VSDG+ +PYR I+APGFAHL + I KG LAD VA+I
Sbjct: 459 YVVSDGSERPYRVHIRAPGFAHLGGFDHISKGHLLADAVAVI 500
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLN+E+P RAK+
Sbjct: 159 DPHVGLLHRGTEKLCEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNVEIPERAKF 218
Query: 370 IRVMF 374
IR +F
Sbjct: 219 IRTLF 223
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 10 KEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+EE K+ +N V ++++R+ +NFGPQHPAAHGVL L E++
Sbjct: 106 REEAPSKVPLDTENSVD-DRKVRHYTVNFGPQHPAAHGVLRLILELS 151
>gi|353526568|ref|YP_004927637.1| NADH dehydrogenase subunit 7 (mitochondrion) [Anomodon rugelii]
gi|336089494|gb|AEH99684.1| NADH dehydrogenase subunit 7 [Anomodon rugelii]
Length = 393
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 164/285 (57%), Positives = 215/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 97 AQYIRVLFREITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 156
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL +DI+ F F++R+DE+E+MLT NR+W QR D+G V+A+ AL++
Sbjct: 157 IRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDW 216
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 217 GFSGVMLRGSGVCWDLRKSAPYDVYNQLIFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQ 276
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS+MK G+ VP +TYTAVEAPKGE
Sbjct: 277 CLNQMPSGMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKGE 336
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT++PYRCKI+APGFAHL L+ + K L+D+V II
Sbjct: 337 FGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLSDVVTII 381
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 61/72 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVEKL N E
Sbjct: 33 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLCNCE 92
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 93 VPLRAQYIRVLF 104
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
KQI+N +NFGPQHPAAHGVL L E+
Sbjct: 5 KQIKNFTLNFGPQHPAAHGVLRLVLEMN 32
>gi|226348818|gb|ACO50722.1| NADH dehydrogenase subunit 7 [Micromonas pusilla CCMP1545]
Length = 398
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 168/285 (58%), Positives = 210/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH++A+ HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 102 AQYIRVLFCEITRVLNHLLALSCHAMDVGALTPFLWAFEEREKLMEFYERVSGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DDI+ F F++R+DE+E+MLT NR+W QR ++G VSAEDAL +
Sbjct: 162 IRPGGVAQDLPLGLCDDIHTFCVHFASRIDEMEEMLTNNRIWKQRLVNIGTVSAEDALAW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK QP D Y+ FD+P+G++G+ VI ++EMRQSLRI+
Sbjct: 222 GFSGVMLRGSGVAWDLRKTQPTDAYDRVSFDVPVGSNGDCYDRYVIRIEEMRQSLRIILA 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N MP G ++ DD KI+ PSR+ MK G VP G Y VEAPKGE
Sbjct: 282 CVNAMPEGSIKVDDRKITPPSRTHMKASMESLIHHFKHYTEGVVVPAGEVYVGVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT KPYRCKI+APGF HL AL+ + K LAD+V II
Sbjct: 342 FGVYLVSNGTHKPYRCKIRAPGFVHLQALDFMAKHHMLADVVTII 386
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+EYK Y QALPYFDRLDYVSMM E YSLAVEKLL
Sbjct: 38 GEVVERADPHIGLLHRGTEKLVEYKNYMQALPYFDRLDYVSMMAQEHGYSLAVEKLLQCP 97
Query: 363 VPLRAKYIRVMFT 375
+PLRA+YIRV+F
Sbjct: 98 IPLRAQYIRVLFC 110
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ K+++N +NFGPQHPAAHGVL L E+
Sbjct: 8 MSKKVKNFTLNFGPQHPAAHGVLRLVLEMN 37
>gi|302414534|ref|XP_003005099.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Verticillium
albo-atrum VaMs.102]
gi|261356168|gb|EEY18596.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Verticillium
albo-atrum VaMs.102]
Length = 472
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF E+TR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 182 LFGELTRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 241
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F RLDE E+MLT+NR+W+QR + VG+VSA +ALN F+G M
Sbjct: 242 HQDIPVGLLDDIYQWATQFGDRLDETEEMLTDNRIWLQRLQGVGVVSAAEALNLSFTGPM 301
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G G+ ++ M+E RQSLRI+ Q +NKMP
Sbjct: 302 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGVRGDCYDRYLVRMEEFRQSLRIIHQCLNKMP 361
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D K+S P R+ M KGY VPPG TY+A+EAPKGE GV++V
Sbjct: 362 AGPVRVEDYKVSPPPRAAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFVV 421
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHLA + + KG LAD VA+I
Sbjct: 422 SDGSERPYRVHIRAPGFAHLAGFDHVCKGHMLADAVAVI 460
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 119 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPDRAKW 178
Query: 370 IRVMF 374
IR +F
Sbjct: 179 IRTLF 183
Score = 45.1 bits (105), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+K++R+ +NFGPQHPAAHGVL L EI
Sbjct: 83 DKKVRHYTVNFGPQHPAAHGVLRLILEIN 111
>gi|389751342|gb|EIM92415.1| NADH-ubiquinone oxidoreductase [Stereum hirsutum FP-91666 SS1]
Length = 465
Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 216/279 (77%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 175 LFGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 234
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DIY + + FS+R+DE+E+++T NR+W QRT +G V+A++AL+Y FSGVM
Sbjct: 235 AFDLPHGLLNDIYQWATQFSSRVDEIEEVVTGNRIWKQRTIGIGPVTAQEALDYSFSGVM 294
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+KWDLRK+ PYD Y+ EFD+PIG +G+ + ++E R+SLRI++Q +NK+
Sbjct: 295 LRGSGVKWDLRKIAPYDKYDEVEFDVPIGKNGDCYDRYLCRVQEFRESLRIIDQCLNKIT 354
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ DD K+ P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 355 TGPVKVDDHKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMGVYLV 414
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PYRCKI+APGFAHLA + + + ++AD+VAII
Sbjct: 415 SDGTNRPYRCKIRAPGFAHLAGADFMMRQHYIADVVAII 453
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RAK+
Sbjct: 112 DPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKW 171
Query: 370 IRVMF 374
IR +F
Sbjct: 172 IRTLF 176
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E +R+ +NFGPQHPAAHGVL L E+
Sbjct: 76 ESTMRHFTVNFGPQHPAAHGVLRLILELN 104
>gi|15130886|emb|CAC48191.1| NADH dehydrogenase subunit 7 [Leucobryum glaucum]
Length = 364
Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 215/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 76 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 135
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL +DI+ F F++R+DE+E+MLT NR+W QR D+G V+A+ AL++
Sbjct: 136 IRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDW 195
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 196 GFSGVMLRGSGVCWDLRKSAPYDVYNQLIFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQ 255
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ D+ K+ PSRS+MK G+ VP +TYTAVEAPKGE
Sbjct: 256 CLNQMPSGMIKADNRKLCPPSRSQMKQSMESLIHHFKLYTEGFSVPASSTYTAVEAPKGE 315
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT++PYRCKI+APGFAHL L+ + K L+D+V II
Sbjct: 316 FGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLSDVVTII 360
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVEKL N E
Sbjct: 12 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLCNCE 71
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 72 VPLRAQYIRVLFC 84
>gi|110225668|ref|YP_665674.1| NADH dehydrogenase subunit 7 [Nephroselmis olivacea]
gi|11134164|sp|Q9TC96.1|NDUS2_NEPOL RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2; AltName: Full=NADH dehydrogenase subunit 7
gi|6066183|gb|AAF03201.1|AF110138_33 NADH dehydrogenase subunit 7 [Nephroselmis olivacea]
Length = 398
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 164/285 (57%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SG+RMHAAY
Sbjct: 102 AQYIRVLFSEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLIEFYERVSGSRMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P L +DIY F F++R+DE+E+MLT NR+W QR D+GIV+AE+A +
Sbjct: 162 IRPGGVACDLPANLCEDIYLFCQQFASRIDEMEEMLTNNRIWKQRLVDIGIVTAENAFAW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGV+LRGSG+ WDLRK QPYD Y FD+P+GT G+ + ++EMRQS+ I+ Q
Sbjct: 222 GFSGVLLRGSGVAWDLRKTQPYDVYNRMIFDVPVGTQGDCYDRYLCRVEEMRQSIHIIMQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N++P G ++ DD KI+ PSRS+MK GY VP TYT+VEAPKGE
Sbjct: 282 CLNQLPKGMIKADDKKITPPSRSQMKQSMESLIHHFKLFTEGYTVPNSETYTSVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT++PYRCKI+APGF HL L+ + K LAD+V II
Sbjct: 342 FGVYLVSNGTNRPYRCKIRAPGFLHLQGLDMMSKNHMLADVVTII 386
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 65/73 (89%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMC E YSLAVEKLL+ E
Sbjct: 38 GEVVARADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCQEHAYSLAVEKLLHCE 97
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV+F+
Sbjct: 98 VPERAQYIRVLFS 110
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+++N +NFGPQHPAAHGVL L E+
Sbjct: 10 KKVKNFTLNFGPQHPAAHGVLRLVLELN 37
>gi|50424435|ref|XP_460805.1| DEHA2F10120p [Debaryomyces hansenii CBS767]
gi|49656474|emb|CAG89146.1| DEHA2F10120p [Debaryomyces hansenii CBS767]
Length = 482
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 208/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH M+V +H +DVG +TPF W FEEREK+MEFYER SGAR+H+ YVRPGGV
Sbjct: 192 LFGEITRILNHCMSVLSHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHSNYVRPGGV 251
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E+++T+NR+W RTKDVG+V+AEDALNY SGVM
Sbjct: 252 SQDMPVGLLDDIYMWATQFGDRIDETEELITDNRIWAARTKDVGVVTAEDALNYSLSGVM 311
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD YE +FD+ +G +G+ +I M E RQSLRI+ Q IN MP
Sbjct: 312 LRGSGIPYDIRKAQPYDAYELVDFDVAVGMNGDCYDRYLIRMAEFRQSLRIIYQCINDMP 371
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G ++T+D K+S P RS M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 372 NGPIKTEDFKVSAPPRSMMKEDMEALIHHFLLYTKGYAVPQGETYTAIEAPKGEMAVYVV 431
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G+ LAD VAII
Sbjct: 432 SDGSERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAII 470
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QA+PYFDRLDYVSMM NE ++LAVEKLLNIEVPLRAKY
Sbjct: 129 DPHVGLLHRGTEKLIESKTYMQAIPYFDRLDYVSMMTNELVFALAVEKLLNIEVPLRAKY 188
Query: 370 IRVMF 374
IR +F
Sbjct: 189 IRTLF 193
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 21 NDNLVPVEKQ---IRNMVINFGPQHPAAHGVLLLFAEI 55
+D+ VEKQ IR+ INFGPQHPAAHGVL L E+
Sbjct: 83 DDDPKHVEKQNTKIRHFTINFGPQHPAAHGVLRLILEL 120
>gi|299830470|ref|YP_003734841.1| NADH dehydrogenase subunit 7 [Pythium ultimum]
gi|269810847|gb|ACZ43876.1| NADH dehydrogenase subunit 7 [Pythium ultimum]
Length = 392
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 167/285 (58%), Positives = 218/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNHI+AV HALDVGAMTP FW FEEREK++EFYER SGARMH++Y
Sbjct: 96 AQYIRVLFSEITRILNHILAVVCHALDVGAMTPLFWGFEEREKLLEFYERVSGARMHSSY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DIY F + F+ RLDE+E++LT+NR+W QR D+G++SA+DAL++
Sbjct: 156 FRPGGVHQDLPKGLLNDIYIFCNQFNTRLDEIEELLTDNRIWKQRLVDIGVISAKDALDW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ Y+ +FDIPIGT+G+ +I ++EMRQS+RI+ Q
Sbjct: 216 GFSGVMLRGSGISWDLRKTQPYEVYDKLDFDIPIGTNGDCYDRYLIRIEEMRQSVRIILQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N++P G ++ DD KI+ P+R +MK V G TYT +EAPKGE
Sbjct: 276 VLNEIPEGLIKLDDKKITNPNRVQMKNSMESLIHHFKYYSENITVNSGETYTVIEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+GV+LVSDGT+KPYRCKI++PGFAHL AL+ + K +AD+V II
Sbjct: 336 YGVFLVSDGTNKPYRCKIRSPGFAHLQALDFMAKNHMIADVVTII 380
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMMC E Y LAVEKLLN +
Sbjct: 32 GEIVKKADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMCQEHAYVLAVEKLLNCD 91
Query: 363 VPLRAKYIRVMFT 375
+PLRA+YIRV+F+
Sbjct: 92 IPLRAQYIRVLFS 104
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+I+N INFGPQHPAAHGVL L E+
Sbjct: 4 KKIKNFSINFGPQHPAAHGVLRLILELN 31
>gi|269812160|gb|ACZ44458.1| NADH dehydrogenase subunit 7 [Pythium ultimum]
Length = 392
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 167/285 (58%), Positives = 218/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNHI+AV HALDVGAMTP FW FEEREK++EFYER SGARMH++Y
Sbjct: 96 AQYIRVLFSEITRILNHILAVVCHALDVGAMTPLFWGFEEREKLLEFYERVSGARMHSSY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DIY F + F+ RLDE+E++LT+NR+W QR D+G++SA+DAL++
Sbjct: 156 FRPGGVHQDLPKGLLNDIYIFCNQFNTRLDEIEELLTDNRIWKQRLVDIGVISAKDALDW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ Y+ +FDIPIGT+G+ +I ++EMRQS+RI+ Q
Sbjct: 216 GFSGVMLRGSGISWDLRKTQPYEVYDKLDFDIPIGTNGDCYDRYLIRIEEMRQSVRIILQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N++P G ++ DD KI+ P+R +MK V G TYT +EAPKGE
Sbjct: 276 VLNEIPEGLIKLDDKKITNPNRIQMKNSMESLIHHFKYYSENITVNSGETYTVIEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+GV+LVSDGT+KPYRCKI++PGFAHL AL+ + K +AD+V II
Sbjct: 336 YGVFLVSDGTNKPYRCKIRSPGFAHLQALDFMAKNHMIADVVTII 380
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMMC E Y LAVEKLLN +
Sbjct: 32 GEIVKKADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMCQEHAYVLAVEKLLNCD 91
Query: 363 VPLRAKYIRVMFT 375
+PLRA+YIRV+F+
Sbjct: 92 IPLRAQYIRVLFS 104
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+I+N INFGPQHPAAHGVL L E+
Sbjct: 4 KKIKNFSINFGPQHPAAHGVLRLILELN 31
>gi|302677172|ref|XP_003028269.1| hypothetical protein SCHCODRAFT_83235 [Schizophyllum commune H4-8]
gi|300101957|gb|EFI93366.1| hypothetical protein SCHCODRAFT_83235 [Schizophyllum commune H4-8]
Length = 387
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 97 LFGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 156
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + FS+R+DEVE+++T NR+W QRT +VG V+AEDA + FSGVM
Sbjct: 157 AFDLPHGLLDDIFKWATQFSSRVDEVEEVVTGNRIWKQRTINVGRVTAEDAQRFSFSGVM 216
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WDLRKV PYD Y+ EFDIP+G +G+ + ++EMR+SLRI+ Q +NKMP
Sbjct: 217 LRGSGVPWDLRKVSPYDAYDQVEFDIPVGKNGDCYDRYLCRVQEMRESLRIISQCLNKMP 276
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G + DD K+ P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 277 TGAYKVDDHKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMGVYLV 336
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PYRC I+APGFAHLA + I + LAD VA+I
Sbjct: 337 SDGSNRPYRCSIRAPGFAHLAGSDFILRNHMLADAVAVI 375
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE+KTYTQALPYFDRLDYVSMM NE CYS+AVEKLLNIEVP RAK+
Sbjct: 34 DPHIGLLHRGTEKLIEFKTYTQALPYFDRLDYVSMMTNELCYSMAVEKLLNIEVPARAKW 93
Query: 370 IRVMF 374
IR +F
Sbjct: 94 IRTLF 98
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEIT 56
+R+ +NFGPQHPAAHGVL + E+
Sbjct: 1 MRHFTVNFGPQHPAAHGVLRMILELN 26
>gi|343425804|emb|CBQ69337.1| probable NADH dehydrogenase (ubiquinone) 49K chain [Sporisorium
reilianum SRZ2]
Length = 470
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 165/285 (57%), Positives = 214/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH MAV +H +DVG +TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 174 AKWIRTMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAY 233
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GLLDDIY + + F +R+DE+E+++T NR+W RT +G V+A++AL+Y
Sbjct: 234 VRPGGVAYDLPPGLLDDIYKWATQFGSRIDEIEEVVTGNRIWKGRTIGIGKVTAQEALDY 293
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WD+RKV PYD Y+ EFD+P+G +G+ + ++E RQSLRI+EQ
Sbjct: 294 GFSGVMLRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYLCRVEEFRQSLRIIEQ 353
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G+++ DD K+ P R+ MK GY VPPG TY+A+EAPKGE
Sbjct: 354 CLNKMPAGQIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAVPPGETYSAIEAPKGE 413
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDGT++PYRCKI+APGFAHLA + + + ++ D+VAII
Sbjct: 414 MGVYLVSDGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDMVAII 458
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYS AVEKLLNIEVP RAK+
Sbjct: 117 DPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERAKW 176
Query: 370 IRVMF 374
IR MF
Sbjct: 177 IRTMF 181
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++ +R+ +NFGPQHPAAHGVL L E+
Sbjct: 81 DRSLRHFTVNFGPQHPAAHGVLRLILELN 109
>gi|402080746|gb|EJT75891.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 478
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 206/279 (73%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+H AYVRPGGV
Sbjct: 188 LFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHTAYVRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP GLLDDIY + + F R+DE E+MLT+NR+WI R + VG+VSA +ALN F+GVM
Sbjct: 248 HQDIPAGLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLQGVGVVSAAEALNLSFTGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK PYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 308 LRGSGVPWDVRKSAPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 367
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P R+ M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 368 AGPVRVEDYKISPPPRAAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHLA + + KG LAD VA+I
Sbjct: 428 SDGSERPYRVSIRAPGFAHLAGFDHVAKGHLLADAVAVI 466
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQC++LAVEKLLN+E+P RAK+
Sbjct: 125 DPHVGLLHRGTEKLCEYKTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKF 184
Query: 370 IRVMF 374
IR +F
Sbjct: 185 IRTLF 189
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++IR+ +NFGPQHPAAHGVL L E++
Sbjct: 89 DRKIRHYTVNFGPQHPAAHGVLRLILELS 117
>gi|15130884|emb|CAC48167.1| NADH dehydrogenase subunit 7 [Dichodontium pellucidum]
Length = 364
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 214/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 76 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 135
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL +DI+ F F++R+DE+E+MLT NR+W QR D+G V+A+ AL++
Sbjct: 136 IRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIWKQRLVDIGTVTAQQALDW 195
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y FD+P+G G+ I ++EMRQS+RI+ Q
Sbjct: 196 GFSGVMLRGSGVCWDLRKSAPYDVYNQLIFDVPVGIRGDCYDRYCIRIEEMRQSIRIIMQ 255
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS+MK G+ VP +TYTAVEAPKGE
Sbjct: 256 CLNQMPSGMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGFYVPASSTYTAVEAPKGE 315
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT++PYRCKI+APGFAHL L+ + K L+D+V II
Sbjct: 316 FGVFLVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLSDVVTII 360
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVEKL N E
Sbjct: 12 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLCNCE 71
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 72 VPLRAQYIRVLFC 84
>gi|392573491|gb|EIW66631.1| hypothetical protein TREMEDRAFT_45745 [Tremella mesenterica DSM
1558]
Length = 460
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 213/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 170 LFGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 229
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + FS+R+DE+E+++T NR+W RT D+G V+A+ AL+Y FSGVM
Sbjct: 230 AFDLPHGLLDDIFKWATQFSSRVDEIEEVVTGNRVWKGRTIDIGKVTAQQALDYSFSGVM 289
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EFD+P+G +G+ + ++E R+SLRI++Q +NKMP
Sbjct: 290 LRGSGIPWDIRKVAPYDSYDKVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIDQCLNKMP 349
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G ++ DD KI P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 350 TGAIKVDDHKIVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYSAIEAPKGEMGVYLV 409
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PY+CKI+APGFAHLA + + + FL D VAII
Sbjct: 410 SDGSNRPYKCKIRAPGFAHLAGSDFMMRHHFLPDAVAII 448
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYK YTQALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RAK+
Sbjct: 107 DPHIGLLHRGTEKLIEYKNYTQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKW 166
Query: 370 IRVMF 374
IR +F
Sbjct: 167 IRTLF 171
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E +R+ +NFGPQHPAAHGVL L E+
Sbjct: 71 EASMRHFTVNFGPQHPAAHGVLRLILELN 99
>gi|84508628|ref|YP_448675.1| NADH dehydrogenase subunit 7 [Desmarestia viridis]
gi|45925660|gb|AAS79061.1| NADH dehydrogenase subunit 7 (mitochondrion) [Desmarestia viridis]
Length = 398
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/285 (58%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQYIRVLFAEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ DI IGL+DDIY F F RLDE+E+MLTENR+W +R D+G+V+A++A+++
Sbjct: 162 FRPGGVSQDISIGLIDDIYSFAVQFGQRLDEMEEMLTENRIWQERLVDIGVVTAQEAIDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG++WDLRK +PY+ Y + +F +G G+ ++ ++EMRQSL ++ Q
Sbjct: 222 GFSGVMLRGSGVRWDLRKNEPYEVYSDLKFCEVVGKTGDCYDRYLVRVEEMRQSLSLIHQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G V+ DD KIS PSR+E+K G VP G TYTA EAPKGE
Sbjct: 282 CLNKMPQGSVKIDDAKISPPSRTEVKQSMESLIHHFKLYTEGVLVPAGETYTATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVSDG+++PYRCKIKAPGFAHL L + LAD+V II
Sbjct: 342 FGVFLVSDGSNRPYRCKIKAPGFAHLQGLNFMANSHMLADVVTII 386
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVSMMC E Y+LAVE LL +
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDYVSMMCQEHTYALAVENLLQVS 97
Query: 363 VPLRAKYIRVMFT 375
+P RA+YIRV+F
Sbjct: 98 IPKRAQYIRVLFA 110
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K++++ INFGPQHPAAHGVL L E+
Sbjct: 10 KKLQHFTINFGPQHPAAHGVLRLILELN 37
>gi|353526600|ref|YP_004927668.1| NADH dehydrogenase subunit 7 (mitochondrion) [Treubia lacunosa]
gi|336089526|gb|AEH99715.1| NADH dehydrogenase subunit 7 [Treubia lacunosa]
Length = 393
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 161/285 (56%), Positives = 216/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 97 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 156
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL +DI+ F F++R+DE+E+MLT NR+W QR ++G V+A+ A+++
Sbjct: 157 IRPGGVAQDLPLGLSEDIFLFTQQFASRIDELEEMLTNNRIWKQRLVNIGTVTAQQAVDW 216
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y+ +FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 217 GFSGVMLRGSGVCWDLRKSAPYDVYDRLDFDVPVGTRGDCYDRYCIRIEEMRQSIRIIMQ 276
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS+MK G +P +TYTAVEAPKGE
Sbjct: 277 CLNQMPSGMIKADDRKLCPPSRSQMKQSMESLIHHFKLYTEGVSIPASSTYTAVEAPKGE 336
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV++VS+GT++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 337 FGVFIVSNGTNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 381
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+L N E
Sbjct: 33 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLCNCE 92
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 93 VPLRAQYIRVLFC 105
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
KQI+N NFGPQHPAAHGVL L E+
Sbjct: 5 KQIKNFTFNFGPQHPAAHGVLRLVLEMN 32
>gi|358057556|dbj|GAA96554.1| hypothetical protein E5Q_03223 [Mixia osmundae IAM 14324]
Length = 473
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 183 LFGEITRVLNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 242
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + FS R+DE E++LTENR+W RT +G V+AE+AL YGF+GVM
Sbjct: 243 AFDLPHGLLDDIFKWATAFSNRVDEFEEVLTENRIWKARTVGIGRVTAEEALAYGFTGVM 302
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RK QPYD Y+ EFD+P+G +G+ + ++E RQSLRI+ Q + KMP
Sbjct: 303 LRGSGIPWDIRKSQPYDAYDQVEFDVPVGRNGDCYDRYLCRIEEFRQSLRIISQCLQKMP 362
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G+++ DD K+ P R+ MK GY VPPG TY+A+EAPKGE GV+LV
Sbjct: 363 PGQIKVDDHKLVAPPRAVMKQSMEATIHHFKLFSEGYSVPPGETYSAIEAPKGEMGVFLV 422
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PYRCKI+APGFAHL + + + FL D+VAII
Sbjct: 423 SDGSNRPYRCKIRAPGFAHLQGSDFMSRHHFLPDMVAII 461
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYS AVEKLLNIEVP RAK+
Sbjct: 120 DPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERAKW 179
Query: 370 IRVMF 374
IR +F
Sbjct: 180 IRTLF 184
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ +R+ +NFGPQHPAAHGVL L E+
Sbjct: 85 RSLRHFTVNFGPQHPAAHGVLRLILELN 112
>gi|371908008|emb|CAP18822.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Mischococcus
sphaerocephalus]
Length = 369
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 168/282 (59%), Positives = 214/282 (75%), Gaps = 22/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 87 IRVLFAEITRILNHLLAVGCHAIDVGAITPFLWSFEEREKLIEFYERVSGARIHAAYFRP 146
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+P+GLLDDI+ F FS RLDE+E++LT NR+W QR D+G+VSA+DAL +GFS
Sbjct: 147 GGVSIDLPLGLLDDIFIFARQFSTRLDEIEEILTNNRIWKQRLVDIGVVSAKDALAHGFS 206
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSG+ WDLR QPYD Y +F+ ++P GT G+ ++ ++EMRQSL+I+ +N
Sbjct: 207 GVMLRGSGLNWDLRVSQPYDVYSSFDIEVPSGTKGDCYDRYLVRIEEMRQSLKIIHTCLN 266
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P GE+R D IS PSR+ +K G+ VP G TYTA EAPKGEFGV
Sbjct: 267 NIPSGEIR--DENISAPSRASIKSSIESLIHHFKLYSEGFIVPCGETYTATEAPKGEFGV 324
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVS+G+++PYRCKIKAPGF HL AL I KG +AD+V II
Sbjct: 325 YLVSNGSNRPYRCKIKAPGFNHLQALNFISKGHIVADVVTII 366
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKT+ QALPYFDRLDYVS++ E Y+LAVE LLN +
Sbjct: 20 GEIVERADPHIGLLHRGTEKLIEYKTFIQALPYFDRLDYVSIIGQEHTYALAVENLLNCK 79
Query: 363 VPLRAKYIRVMFT 375
PLR+ YIRV+F
Sbjct: 80 APLRSIYIRVLFA 92
>gi|388509876|gb|AFK43004.1| unknown [Lotus japonicus]
gi|388517563|gb|AFK46843.1| unknown [Lotus japonicus]
Length = 320
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 24 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 83
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 84 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 143
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y+ +FD+P+GT G+ I M+EMRQSLRI+ Q
Sbjct: 144 GFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRMEEMRQSLRIILQ 203
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 204 CLNKMPSGMIKADDRKLCPPSRCRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 263
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 264 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 308
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 26/32 (81%)
Query: 344 MMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFT 375
MM E YSLAVE+LLN EVPLRA+YIRV+F
Sbjct: 1 MMAQEHAYSLAVERLLNCEVPLRAQYIRVLFC 32
>gi|390604951|gb|EIN14342.1| NADH dehydrogenase I D subunit [Punctularia strigosozonata
HHB-11173 SS5]
Length = 462
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF E+TR+LNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 172 LFGELTRVLNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 231
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DIY + + FS+R+DE+E+++T NR+W +RT VG+V+A++A++Y FSGVM
Sbjct: 232 AFDLPHGLLNDIYQWATQFSSRVDEIEEVVTGNRIWKERTIGVGVVTAKEAMDYSFSGVM 291
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+KWDLRKV PYD Y EFD+P+G +G+ + ++E R+SLRI+ Q +NKMP
Sbjct: 292 LRGSGVKWDLRKVAPYDKYAEVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIHQCLNKMP 351
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G ++ DD K+ P R+ MK G+ VPPG TYTA+EAPKGE VYLV
Sbjct: 352 TGVIKVDDYKLVPPPRATMKESMEALIHHFKIFSEGFSVPPGETYTAIEAPKGEMAVYLV 411
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PYRC I+APGFAHLA + + +G +AD+VAII
Sbjct: 412 SDGTNRPYRCSIRAPGFAHLAGSDFMMRGHTVADVVAII 450
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NE CYSLAVEKLLNI+VP RAK+
Sbjct: 109 DPHVGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMTNELCYSLAVEKLLNIDVPERAKW 168
Query: 370 IRVMF 374
IR +F
Sbjct: 169 IRTLF 173
>gi|388856264|emb|CCF50073.1| probable NADH dehydrogenase (ubiquinone) 49K chain [Ustilago
hordei]
Length = 470
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 164/279 (58%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F E+TRILNH MAV +H +DVG +TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 180 MFGEMTRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYVRPGGV 239
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDIY + + F +R+DE+E+++T NR+W RT +G V+A+ AL+YGFSGVM
Sbjct: 240 AYDLPPGLLDDIYKWATQFGSRVDEIEEVVTGNRIWKGRTIGIGKVTAQQALDYGFSGVM 299
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EFD+P+G +G+ + ++E RQSLRI+EQ +NKMP
Sbjct: 300 LRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYLCRVEEFRQSLRIIEQCLNKMP 359
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G+++ DD K+ P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 360 AGQIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAVPPGETYSAIEAPKGEMGVYLV 419
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PYRCKI+APGFAHLA + + + ++ DIVAII
Sbjct: 420 SDGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDIVAII 458
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYS AVEKLLNIEVP RAK+
Sbjct: 117 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERAKW 176
Query: 370 IRVMF 374
IR MF
Sbjct: 177 IRTMF 181
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++ +R+ +NFGPQHPAAHGVL L E+
Sbjct: 81 DRSLRHFTVNFGPQHPAAHGVLRLILELN 109
>gi|268053566|ref|YP_003288925.1| NADH dehydrogenase subunit 7 [Saccharina japonica]
gi|268053605|ref|YP_003288963.1| NADH dehydrogenase subunit 7 [Saccharina religiosa]
gi|268053644|ref|YP_003289001.1| NADH dehydrogenase subunit 7 [Saccharina ochotensis]
gi|268053683|ref|YP_003289078.1| NADH dehydrogenase subunit 7 [Saccharina diabolica]
gi|268053722|ref|YP_003289129.1| NADH dehydrogenase subunit 7 [Saccharina longipedalis]
gi|336251459|ref|YP_004599025.1| NADH dehydrogenase subunit 7 [Saccharina japonica x latissima]
gi|262318186|dbj|BAI48511.1| NADH dehydrogenase subunit 7 [Saccharina japonica]
gi|262318225|dbj|BAI48549.1| NADH dehydrogenase subunit 7 [Saccharina religiosa]
gi|262318264|dbj|BAI48587.1| NADH dehydrogenase subunit 7 [Saccharina ochotensis]
gi|262318303|dbj|BAI48625.1| NADH dehydrogenase subunit 7 [Saccharina diabolica]
gi|262318342|dbj|BAI48663.1| NADH dehydrogenase subunit 7 [Saccharina longipedalis]
gi|335354789|gb|AEH43394.1| NADH dehydrogenase subunit 7 [Saccharina japonica x latissima]
Length = 398
Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 167/285 (58%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQYIRVLFAEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ DI IGL+DDI+ F + F RLDE+E+MLT+NR+W +R D+G+V+A++A+++
Sbjct: 162 FRPGGVSQDITIGLIDDIFSFAAQFGQRLDEIEEMLTDNRIWQERLVDIGVVNAQEAIDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI+WDLRK +PYD Y F +G G+ ++ ++EMRQSL I+ Q
Sbjct: 222 GFSGVMLRGSGIRWDLRKNEPYDAYSELSFQGVVGKTGDCYDRYLVRVEEMRQSLSIIYQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G V+ DD KI+ PSR+++K G VP G TY A EAPKGE
Sbjct: 282 CLNKMPKGSVKVDDSKITPPSRADVKQSMEALIHHFKLYTEGVTVPSGETYIATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+++PYRCKIKAPGF+HL AL + LAD+V II
Sbjct: 342 FGVYLVSDGSNRPYRCKIKAPGFSHLQALNFMANSHMLADVVTII 386
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVSMMC E Y+LAVE LL I
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDYVSMMCQEHTYALAVENLLQIS 97
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV+F
Sbjct: 98 VPKRAQYIRVLFA 110
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 33 NMVINFGPQHPAAHGVLLLFAEIT 56
+ INFGPQHPAAHGVL L E+
Sbjct: 14 HFTINFGPQHPAAHGVLRLILELN 37
>gi|50556238|ref|XP_505527.1| YALI0F17248p [Yarrowia lipolytica]
gi|6689652|emb|CAB65521.1| NUCM protein [Yarrowia lipolytica]
gi|49651397|emb|CAG78336.1| YALI0F17248p [Yarrowia lipolytica CLIB122]
Length = 466
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 176 MFGEITRVLNHLMSVCSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 235
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F RLDE+E++LT+NR+W RT ++G V+A+DALN G SG M
Sbjct: 236 SQDLPAGLLDDIYMWATQFGDRLDEIEELLTDNRIWKLRTVNIGTVTAQDALNLGLSGPM 295
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK PYD Y+ +FD+P+G +G+ +I M E RQSLRI+EQ N MP
Sbjct: 296 LRGSGIPFDIRKNAPYDAYDKVDFDVPVGMNGDCYDRYLIRMAEFRQSLRIIEQCCNDMP 355
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KI++P R+ M KGY VPPG TYTA+EAPKGE GVY+V
Sbjct: 356 AGAVKVEDFKINSPPRNLMKEDMEALIHHFLLYTKGYSVPPGETYTAIEAPKGEMGVYVV 415
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PY+CKI+APGFAHL A + I +G FL D VAII
Sbjct: 416 SDGSERPYKCKIRAPGFAHLGAFDHIARGHFLPDAVAII 454
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQ +SLAVEKLLN+EVPLR KY
Sbjct: 113 DPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMTNEQVFSLAVEKLLNVEVPLRGKY 172
Query: 370 IRVMF 374
IR MF
Sbjct: 173 IRTMF 177
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 23 NLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
N +IR INFGPQHPAAHGVL L E++
Sbjct: 72 NTSDANTRIRAFTINFGPQHPAAHGVLRLILELS 105
>gi|409052002|gb|EKM61478.1| hypothetical protein PHACADRAFT_248119 [Phanerochaete carnosa
HHB-10118-sp]
Length = 474
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITR+LNH+MA+ THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 184 MFGEITRVLNHLMAILTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DIY + + FS+R+DE+E+++T NR+W RT D+G V+A+ AL+Y FSGVM
Sbjct: 244 AFDLPHGLLEDIYMWATQFSSRVDEIEEVVTGNRIWKSRTIDIGKVTAKQALDYSFSGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WDLRKVQPYD Y+ EFD+PIG +G+ + ++E R+SL I+ Q +NKMP
Sbjct: 304 LRGSGIPWDLRKVQPYDKYDEVEFDVPIGKNGDCYDRYLCRVQEFRESLHIIHQCLNKMP 363
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G + DD K+ P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 364 AGAFKVDDYKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMGVYLV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PYRCKI+APGFAHLA + + + +LAD VA+I
Sbjct: 424 SDGTNRPYRCKIRAPGFAHLAGADFMMRRHYLADAVAVI 462
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/65 (92%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RAK+
Sbjct: 121 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKW 180
Query: 370 IRVMF 374
IR MF
Sbjct: 181 IRTMF 185
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E Q+R+ +NFGPQHPAAHGVL L E+
Sbjct: 85 ESQMRHFTVNFGPQHPAAHGVLRLILELN 113
>gi|268164071|ref|YP_003288836.1| NADH dehydrogenase subunit 7 [Saccharina angustata]
gi|262318381|dbj|BAI48701.1| NADH dehydrogenase subunit 7 [Saccharina angustata]
Length = 398
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 167/285 (58%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQYIRVLFAEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ DI IGL+DDI+ F + F RLDE+E+MLT+NR+W +R D+G+V+A++A+++
Sbjct: 162 FRPGGVSQDITIGLIDDIFSFAAQFGQRLDEIEEMLTDNRIWQERLVDIGVVNAQEAIDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI+WDLRK +PYD Y F +G G+ ++ ++EMRQSL I+ Q
Sbjct: 222 GFSGVMLRGSGIRWDLRKNEPYDAYSELSFQGVVGKTGDCYDRYLVRVEEMRQSLSIIYQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G V+ DD KI+ PSR+++K G VP G TY A EAPKGE
Sbjct: 282 CLNKMPEGSVKVDDSKITPPSRADVKQSMEALIHHFKLYTEGVTVPSGETYIATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+++PYRCKIKAPGF+HL AL + LAD+V II
Sbjct: 342 FGVYLVSDGSNRPYRCKIKAPGFSHLQALNFMANSHMLADVVTII 386
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVSMMC E Y+LAVE LL I
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDYVSMMCQEHTYALAVENLLQIS 97
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV+F
Sbjct: 98 VPKRAQYIRVLFA 110
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 33 NMVINFGPQHPAAHGVLLLFAEIT 56
+ INFGPQHPAAHGVL L E+
Sbjct: 14 HFTINFGPQHPAAHGVLRLILELN 37
>gi|371908002|emb|CAP18819.1| NADH dehydrogenase subunit 7, partial (mitochondrion)
[Bumilleriopsis filiformis]
Length = 360
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 171/279 (61%), Positives = 208/279 (74%), Gaps = 22/279 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGARMHAAY RP
Sbjct: 84 IRVIFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARMHAAYFRP 143
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+P GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+VSA DA+ GFS
Sbjct: 144 GGVSIDLPYGLIDDIYVFIIQFSTRLDEIEEILTSNRIWKQRLVDIGVVSASDAIALGFS 203
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGI WDLR QPYD Y + FDIP+GT G+ ++ ++EMRQSL I+ Q +N
Sbjct: 204 GVMLRGSGINWDLRISQPYDIYSSLSFDIPVGTKGDCYDRYLLRVEEMRQSLSIIHQCLN 263
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
MP G V+ D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 264 NMPSGPVK--DENISPPSRTNLKSSIEALIHHFKLYTEGVVVPSGETYTATEAPKGEFGV 321
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIV 306
YLVS+GT++PYRCKIKAPGF HL AL I KG +AD+V
Sbjct: 322 YLVSNGTNRPYRCKIKAPGFNHLQALNFICKGHIVADVV 360
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E YSLAVE LL +
Sbjct: 17 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYSLAVENLLQCK 76
Query: 363 VPLRAKYIRVMFT 375
+P+R+ YIRV+F
Sbjct: 77 IPIRSIYIRVIFA 89
>gi|21450025|ref|NP_659287.1| NADH dehydrogenase subunit 7 [Laminaria digitata]
gi|21425350|emb|CAC87983.1| NADH dehydrogenase subunit 7 [Laminaria digitata]
Length = 398
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 166/285 (58%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQYIRILFAEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ DI IGL++DI+ F + F RLDE+E+MLT+NR+W +R D+G+VSA++A+++
Sbjct: 162 FRPGGVSQDISIGLINDIFSFAAQFGQRLDEMEEMLTDNRIWQERLVDIGVVSAQEAIDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG+G++WDLRK +PYD Y F +G G+ ++ ++EMRQSL I+ Q
Sbjct: 222 GFSGVMLRGTGVRWDLRKNEPYDAYSELSFQGVVGKTGDCYDRYLVRVEEMRQSLSIIYQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD KIS PSR+++K G VP G TYTA EAPKGE
Sbjct: 282 CLNKMPEGSIKIDDAKISPPSRADVKQSMEALIHHFKLYTEGVTVPLGETYTATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+++PYRCKIKAPGF+HL AL + LAD+V II
Sbjct: 342 FGVYLVSDGSNRPYRCKIKAPGFSHLQALNFMANSHMLADVVTII 386
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVSMMC E Y+LAVE LL I
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDYVSMMCQEHTYALAVENLLQIS 97
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIR++F
Sbjct: 98 VPKRAQYIRILFA 110
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 33 NMVINFGPQHPAAHGVLLLFAEIT 56
+ INFGPQHPAAHGVL L E+
Sbjct: 14 HFTINFGPQHPAAHGVLRLILELN 37
>gi|340924183|gb|EGS19086.1| NADH-ubiquinone oxidoreductase 49 kDa subunit-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 506
Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 170/294 (57%), Positives = 211/294 (71%), Gaps = 27/294 (9%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMM-------EFYERA 95
P A + +F EITRILNH+M+V +HA+DVGA+TPF W FEEREK+M EFYER
Sbjct: 201 PRAKFIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMKLTIAPKEFYERV 260
Query: 96 SGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGI 155
SGAR+HAAYVRPGGV DIP+GLLDDIY + + F R+DE E+MLT+NR+WI R K VG+
Sbjct: 261 SGARLHAAYVRPGGVHQDIPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLKGVGV 320
Query: 156 VSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEM 210
VSA DALN F+GVMLRGSG+ WD+RK PYD Y+ EFD+P+G +G+ + M+E
Sbjct: 321 VSAADALNLSFTGVMLRGSGVPWDVRKSSPYDAYDQVEFDVPVGINGDCYDRYLCRMEEF 380
Query: 211 RQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEM---------------KGYPVPPGATY 255
RQSLRI+ Q +NKMP G VR +D KI+ P R+ M KGY VPPG TY
Sbjct: 381 RQSLRIIHQCLNKMPAGPVRYEDYKITPPPRAAMKENMEALIHHFLLFTKGYAVPPGDTY 440
Query: 256 TAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
TA+EAPKGE GVY+VSDG+ +PYR I+APGFAHL+ + I +G LAD VA+I
Sbjct: 441 TAIEAPKGEMGVYVVSDGSERPYRVHIRAPGFAHLSGFDHITRGHLLADAVAVI 494
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQ +SLAVEKLLNIE+P RAK+
Sbjct: 146 DPHVGLLHRGTEKLCEYKTYMQALPYFDRLDYVSMMTNEQVFSLAVEKLLNIEIPPRAKF 205
Query: 370 IRVMF 374
IR MF
Sbjct: 206 IRTMF 210
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+++R+ +NFGPQHPAAHGVL L E+
Sbjct: 111 RKVRHYTVNFGPQHPAAHGVLRLILELN 138
>gi|319412287|gb|ADV41824.1| NADH dehydrogenase subunit 7 [Bigelowiella natans]
Length = 397
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 165/285 (57%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+E+TRILNH++++ THALDVGA+TPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 101 AQYIRVIFSELTRILNHLLSLTTHALDVGALTPFLWAFEEREKLMEFYERVSGARMHAAY 160
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV+ D+P GLL DI FI F +R+DE+E++LT+NR+W QR +G VSA AL +
Sbjct: 161 VRPGGVSQDLPAGLLSDISSFIEQFGSRVDEIEELLTDNRIWKQRLVGIGTVSARAALAH 220
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVMLRGSG++WDLR+ +PY+ Y FD+P+GT G+ +I ++EMRQS+RIVEQ
Sbjct: 221 SFSGVMLRGSGVRWDLRESRPYEVYNKLSFDVPVGTSGDCYDRYLIRIEEMRQSIRIVEQ 280
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I ++P G ++ DD K+ P+R +MK G+ VP G TY AVEAPKGE
Sbjct: 281 CIAQIPSGHIKVDDNKVVKPTRPQMKRSMESLIHHFKLFTEGFVVPKGDTYAAVEAPKGE 340
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+SDGTS+PYRCKIKAPGFAHL L+ + K +AD+VAII
Sbjct: 341 FGVYLISDGTSRPYRCKIKAPGFAHLGGLDFMSKEHMMADVVAII 385
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 58/66 (87%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVSMM E YSLAVE+LL VP+RA+Y
Sbjct: 44 DPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSMMAQEHGYSLAVERLLQKNVPIRAQY 103
Query: 370 IRVMFT 375
IRV+F+
Sbjct: 104 IRVIFS 109
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E ++ + +NFGPQHP+AHGVL L E+
Sbjct: 8 ETRMETLSLNFGPQHPSAHGVLRLVLEL 35
>gi|448089604|ref|XP_004196852.1| Piso0_004078 [Millerozyma farinosa CBS 7064]
gi|448093904|ref|XP_004197883.1| Piso0_004078 [Millerozyma farinosa CBS 7064]
gi|359378274|emb|CCE84533.1| Piso0_004078 [Millerozyma farinosa CBS 7064]
gi|359379305|emb|CCE83502.1| Piso0_004078 [Millerozyma farinosa CBS 7064]
Length = 479
Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 208/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH M+V +H +DVG +TPF W FEEREK+MEFYER SGAR+H+AYVRPGGV
Sbjct: 189 LFGEITRVLNHCMSVLSHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGV 248
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDIY + + F R+DEVE+++T+NR+W RT+DVG+V+AEDALNY +GVM
Sbjct: 249 AQDLPAGLLDDIYMWATQFGDRIDEVEELVTDNRIWKARTQDVGVVTAEDALNYSLTGVM 308
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD YE +FD+P+G +G+ +I M E RQSLRI+ Q IN MP
Sbjct: 309 LRGSGIPYDVRKAQPYDAYEYVDFDVPVGMNGDCYDRYLIRMAEFRQSLRIIFQCINDMP 368
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P RS M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 369 NGPVKVEDFKISPPPRSLMKEDMEALIHHFLLFTKGYCVPQGETYTAIEAPKGEMAVYVV 428
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+D T +PYRCKI+APGFAHL A + I +G+ LAD VAII
Sbjct: 429 ADNTERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAII 467
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NE ++LAVEKLLN+EVPLRAKY
Sbjct: 126 DPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKY 185
Query: 370 IRVMF 374
IR +F
Sbjct: 186 IRTLF 190
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 21 NDNLVPVEKQ---IRNMVINFGPQHPAAHGVLLLFAEI 55
+D+ VEKQ IR+ INFGPQHPAAHGVL L E+
Sbjct: 80 DDDPKKVEKQNTKIRHFTINFGPQHPAAHGVLRLILEL 117
>gi|268164110|ref|YP_003288887.1| NADH dehydrogenase subunit 7 [Saccharina coriacea]
gi|262318420|dbj|BAI48739.1| NADH dehydrogenase subunit 7 [Saccharina coriacea]
Length = 398
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/285 (58%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQYIRVLFAEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+ IGL+DDI+ F + F RLDE+E+MLT+NR+W +R D+G+V+A++A+++
Sbjct: 162 FRPGGVSQDLTIGLIDDIFSFAAQFGQRLDEIEEMLTDNRIWQERLVDIGVVNAQEAIDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI+WDLRK +PYD Y F +G G+ ++ ++EMRQSL I+ Q
Sbjct: 222 GFSGVMLRGSGIRWDLRKNEPYDAYSELSFQGVVGKTGDCYDRYLVRVEEMRQSLSIIYQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G V+ DD KI+ PSR+++K G VP G TY A EAPKGE
Sbjct: 282 CLNKMPEGSVKVDDSKITPPSRADVKQSMEALIHHFKLYTEGVTVPSGETYIATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+++PYRCKIKAPGF+HL AL + LAD+V II
Sbjct: 342 FGVYLVSDGSNRPYRCKIKAPGFSHLQALNFMANSHMLADVVTII 386
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVSMMC E Y+LAVE LL I
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDYVSMMCQEHTYALAVENLLQIS 97
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV+F
Sbjct: 98 VPKRAQYIRVLFA 110
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 33 NMVINFGPQHPAAHGVLLLFAEIT 56
+ INFGPQHPAAHGVL L E+
Sbjct: 14 HFTINFGPQHPAAHGVLRLILELN 37
>gi|50261301|ref|YP_052909.1| NADH dehydrogenase subunit 7 [Saprolegnia ferax]
gi|48237614|gb|AAT40663.1| NADH dehydrogenase subunit 7 [Saprolegnia ferax]
Length = 392
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 169/285 (59%), Positives = 214/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++A+ HALDVGAMTPFFW FEEREK+MEFYER SGARMH++Y
Sbjct: 96 AKYIRVLFSEITRILNHLLAITCHALDVGAMTPFFWGFEEREKLMEFYERVSGARMHSSY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P+GLL+DI+ F + F RLDE E+MLT NR+W QR D+GIV A+DAL+
Sbjct: 156 FRPGGVHQDLPLGLLNDIFIFCNQFPTRLDEFEEMLTGNRIWKQRLVDIGIVKAKDALDL 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ Y+ +F IPIGT+G+ +I ++EMRQS+ I+ Q
Sbjct: 216 GFSGVMLRGSGISWDLRKTQPYEIYDKLDFSIPIGTNGDCYDRYLIRIEEMRQSINIILQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD KIS+P+R ++K V G T+T +EAPKGE
Sbjct: 276 TLNQMPEGPIKIDDKKISSPNRVQIKQSMESLIHHFKYYSENITVNSGETFTVIEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVSDGT+KPYRCKIKAPGFAHL AL+ + K +AD+V II
Sbjct: 336 FGVFLVSDGTNKPYRCKIKAPGFAHLQALDFMCKDHMIADVVTII 380
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMM E Y LAVEKLLN
Sbjct: 32 GEIVQKADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMSQEHAYVLAVEKLLNCN 91
Query: 363 VPLRAKYIRVMFT 375
+PLRAKYIRV+F+
Sbjct: 92 IPLRAKYIRVLFS 104
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+I+N INFGPQHPAAHGVL L E+
Sbjct: 4 KKIKNFSINFGPQHPAAHGVLRLILELN 31
>gi|84508588|ref|YP_448636.1| NADH dehydrogenase subunit 7 [Fucus vesiculosus]
gi|39653311|gb|AAR29330.1| NADH dehydrogenase subunit 7 (mitochondrion) [Fucus vesiculosus]
Length = 398
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 168/285 (58%), Positives = 210/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQYIRVLFAEITRILNHLLAVGCHAMDVGAMTPFLWSFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ DI +G++DDIY F F RLDE+E+MLT+NR+W +R D+G+V+A++A+N+
Sbjct: 162 FRPGGVSQDISLGIVDDIYTFAGQFGQRLDEMEEMLTDNRIWQERLVDIGVVTAQEAVNW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG++WDLRK +PY+ Y F +G G+ + ++EMRQSL I+ Q
Sbjct: 222 GFSGVMLRGSGVRWDLRKNEPYEVYSELNFRGVVGKTGDCYDRYLARVEEMRQSLSIIHQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N MP G V+ DD KIS PSRSE+K G VP G TYTA EAPKGE
Sbjct: 282 CLNNMPKGSVKIDDAKISPPSRSEVKQNMESLIHHFKLYTEGVSVPSGETYTATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+++PYRCKIKAPGF+HL L + K LAD+V II
Sbjct: 342 FGVYLVSDGSNRPYRCKIKAPGFSHLQGLNFMAKSHMLADVVTII 386
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVSMMC E Y LAVE LL +
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIEAKTYVQALPYFDRLDYVSMMCQEHTYVLAVENLLQVS 97
Query: 363 VPLRAKYIRVMFT 375
+P RA+YIRV+F
Sbjct: 98 IPRRAQYIRVLFA 110
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEIT 56
++ INFGPQHPAAHGVL L E+
Sbjct: 13 QHFTINFGPQHPAAHGVLRLILELN 37
>gi|402222758|gb|EJU02824.1| NADH dehydrogenase I D subunit [Dacryopinax sp. DJM-731 SS1]
Length = 449
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHA YVRPGGV
Sbjct: 159 LFGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHANYVRPGGV 218
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLL+DI+ + + FS+R+DE E++LT NR+W RT +G V+A++AL+Y FSGVM
Sbjct: 219 SFDLPNGLLEDIFKWATQFSSRVDEFEEVLTANRIWKVRTIGIGPVTAQEALDYSFSGVM 278
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WDLRKVQPY+ Y+ EFD+P+G +G+ + ++EMR+SLRIV Q +NKMP
Sbjct: 279 LRGSGIAWDLRKVQPYECYDQVEFDVPVGKNGDSYDRYLCRVQEMRESLRIVGQCLNKMP 338
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G ++ DD KIS P R+ MK GY VPPG TY+A+EAPKGE VYLV
Sbjct: 339 TGVIKVDDHKISNPPRAMMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMAVYLV 398
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PYRCKI+APGFAHLA + + +G LAD V II
Sbjct: 399 SDGSNRPYRCKIRAPGFAHLAGADFMMRGHNLADAVTII 437
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHR TEKLIEYKTYTQA PYFDRLDYVSMM NEQC++LAVEKLLNI+VP+RAK+
Sbjct: 96 DPHIGLLHRATEKLIEYKTYTQAAPYFDRLDYVSMMTNEQCFALAVEKLLNIDVPIRAKW 155
Query: 370 IRVMF 374
IR +F
Sbjct: 156 IRTLF 160
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ +++ +NFGPQHPAAHGVL L E+
Sbjct: 60 DASLKHFTVNFGPQHPAAHGVLRLILELN 88
>gi|449541539|gb|EMD32522.1| hypothetical protein CERSUDRAFT_87840 [Ceriporiopsis subvermispora
B]
Length = 461
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 171 LFGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 230
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DIY + + FS+R+DE+E+++T NR+W +RT +G V+A+ AL+Y FSGVM
Sbjct: 231 AFDLPHGLLNDIYMWATQFSSRVDEIEEVVTGNRIWKERTIGIGKVTAQQALDYSFSGVM 290
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RKV PYD Y +FDIP+G +G+ + ++E R+SLRI++Q +NKMP
Sbjct: 291 LRGSGVPWDIRKVAPYDKYAEVDFDIPVGKNGDCYDRYLCRVQEFRESLRIIDQCLNKMP 350
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G + DD K+S P R+ MK GY VPPG TY A+EAPKGE GVYLV
Sbjct: 351 TGAYKVDDYKLSPPPRAAMKESMESLIHHFKLFSEGYSVPPGETYVAIEAPKGEMGVYLV 410
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PYRCKI+APGFAHLA + + + LAD+VAII
Sbjct: 411 SDGTNRPYRCKIRAPGFAHLAGADFMMRRHLLADVVAII 449
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RAK+
Sbjct: 108 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKW 167
Query: 370 IRVMF 374
IR +F
Sbjct: 168 IRTLF 172
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 15 WKIINWNDNLVP----VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
W+ + +D L + +R+ +NFGPQHPAAHGVL L E+
Sbjct: 55 WQGMTASDILAESGTRADAHMRHFTVNFGPQHPAAHGVLRLILELN 100
>gi|73667050|ref|YP_303066.1| NADH dehydrogenase subunit D [Ehrlichia canis str. Jake]
gi|123614938|sp|Q3YS37.1|NUOD_EHRCJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|72394191|gb|AAZ68468.1| NADH dehydrogenase subunit D [Ehrlichia canis str. Jake]
Length = 393
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 161/280 (57%), Positives = 215/280 (76%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++F E+TRILNH++ + + ALD+GAMTP W+FEEREK++ FYERASGAR H+AY+RPGG
Sbjct: 102 VIFCELTRILNHLLNISSQALDIGAMTPLLWMFEEREKILGFYERASGARFHSAYIRPGG 161
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA D+P L+DDI+ F+STFS +D+++D+LTENR+W QR D+G+VS + AL++GFSG
Sbjct: 162 VAADVPSDLIDDIFKFVSTFSKFMDDIDDLLTENRIWKQRNVDIGVVSKKQALDWGFSGP 221
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR GI WDLRK QPY+ YE+ EF+IP+G +G+ ++ M E+RQS++++EQ ++++
Sbjct: 222 MLRACGIPWDLRKSQPYEIYEDLEFEIPVGENGDCYDRYLVRMAEIRQSIKLLEQCLDRL 281
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+TDD KI+ P RSEMK GY VP G TY AVEAPKGEFGVY+
Sbjct: 282 PDGPVKTDDRKIAPPKRSEMKESMEALIHHFKLYSEGYSVPVGETYMAVEAPKGEFGVYI 341
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRC+I+APGFAHL A++ I KG LAD+ AII
Sbjct: 342 VSDGTNKPYRCRIRAPGFAHLQAIDIIAKGHMLADLTAII 381
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 33 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMAQEHAYSLCVEKLLKCE 92
Query: 363 VPLRAKYIRVMFT 375
+P+RAKY+RV+F
Sbjct: 93 IPIRAKYLRVIFC 105
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 6 KITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHI 43
>gi|71021681|ref|XP_761071.1| hypothetical protein UM04924.1 [Ustilago maydis 521]
gi|46100635|gb|EAK85868.1| hypothetical protein UM04924.1 [Ustilago maydis 521]
Length = 498
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 163/279 (58%), Positives = 212/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH MAV +H +DVG +TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 208 MFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYVRPGGV 267
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + F +R+DE+E+++T NR+W RT +G V+A++AL+YGFSGVM
Sbjct: 268 AYDLPPGLLDDIHKWATQFGSRVDEIEEVVTGNRIWKGRTIGIGKVTAQEALDYGFSGVM 327
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EFD+P+G +G+ + ++E RQSLRI+EQ +NKMP
Sbjct: 328 LRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYLCRVEEFRQSLRIIEQCLNKMP 387
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G+++ DD K+ P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 388 AGQIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAVPPGETYSAIEAPKGEMGVYLV 447
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PYRCKI+APGFAHLA + + + ++ D+VAII
Sbjct: 448 SDGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDMVAII 486
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 65/81 (80%)
Query: 294 EKIGKGSFLADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSL 353
+ I F V I+ PH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYS
Sbjct: 129 DSIQSCLFWPSGVCILQPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSR 188
Query: 354 AVEKLLNIEVPLRAKYIRVMF 374
AVEKLLNIEVP RAK+IR MF
Sbjct: 189 AVEKLLNIEVPERAKWIRTMF 209
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT--RILNHIMAVGTHALDVGAMTPFFW 80
++ +R+ +NFGPQHPAAHGVL L E+ IL +A+ + + FW
Sbjct: 83 DRSLRHFTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFW 137
>gi|91078082|ref|XP_972109.1| PREDICTED: similar to NADH dehydrogenase iron-sulfur protein 2,
mitochondrial [Tribolium castaneum]
gi|270002319|gb|EEZ98766.1| hypothetical protein TcasGA2_TC001330 [Tribolium castaneum]
Length = 455
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/285 (58%), Positives = 214/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR++NH+ A LDVG +TP FWLFEEREK+ME YER GAR+HA Y
Sbjct: 159 AKFIRVLFDEITRLMNHMAATSFLILDVGGITPLFWLFEEREKLMEVYERVCGARLHANY 218
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+PIGLLDDI++ +S F R+DEVED++T+NRL+I RTK++G V+A+DALN
Sbjct: 219 YRIGGVNQDLPIGLLDDIHNLVSKFGERIDEVEDLVTDNRLFIARTKNIGRVAAQDALNM 278
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLR SGIKWDLRK +PY+ Y EFD+P+G++G++ + ++EMRQS+RIVEQ
Sbjct: 279 GFSGCMLRASGIKWDLRKTRPYEIYSELEFDVPVGSNGDIYDRFRVRLEEMRQSVRIVEQ 338
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
IN+MP GEV+ DD KIS P+R EMK G+ VPPG+TYT++E PKGE
Sbjct: 339 VINQMPPGEVKLDDHKISPPNRREMKSSMEAIIHHFKIFSQGFQVPPGSTYTSIEHPKGE 398
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+S PYRCKI+ P F HL+A+ IGK +LAD+VAI+
Sbjct: 399 FGVYLVSDGSSVPYRCKIRTPSFIHLSAMNHIGKNHYLADVVAIL 443
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 62/72 (86%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYVS MC+E + LA EKLLNI+
Sbjct: 95 GEMVRHLDPHIGLLHRGTEKLIEYKTYNQAIPYFDRLDYVSPMCSEHAFCLAAEKLLNID 154
Query: 363 VPLRAKYIRVMF 374
+P RAK+IRV+F
Sbjct: 155 IPRRAKFIRVLF 166
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+YPD+ +K+K+ +N P E+++ N+V+NFGP HPAAHG L + E+
Sbjct: 43 VMYPDELTSKFKLPPFNAKCPPPERKVTNLVVNFGPCHPAAHGCLRMITEL 93
>gi|254571861|ref|XP_002493040.1| hypothetical protein [Komagataella pastoris GS115]
gi|238032838|emb|CAY70861.1| Hypothetical protein PAS_chr3_0808 [Komagataella pastoris GS115]
gi|308152240|emb|CBI83539.1| NUCM (49 kDa) subunit of mitochondrial NADH:ubiquinone
oxidoreductase (complex I) [Komagataella pastoris]
gi|328352948|emb|CCA39346.1| NADH dehydrogenase (ubiquinone) Fe-S protein 2 [Komagataella
pastoris CBS 7435]
Length = 482
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+H+AYVRPGGV
Sbjct: 192 LFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGV 251
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F RLDE E++LT++R+W QRT +G V+AEDALNYG SGVM
Sbjct: 252 SQDLPAGLLDDIYMWATQFGDRLDETEELLTDSRIWKQRTIGIGEVTAEDALNYGLSGVM 311
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ +D+RK QPYD Y+ +FDI +GT G+ +I M E RQSLRI+EQ N+MP
Sbjct: 312 LRGSGVPFDIRKSQPYDAYDKVDFDIAVGTKGDCYDRYLIRMTEFRQSLRIIEQCCNQMP 371
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D K++ P R+ M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 372 PGPVKVEDFKVAPPPRALMKEDMEALIHHFLLYTKGYAVPAGETYTAIEAPKGEMAVYVV 431
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G FL D VAII
Sbjct: 432 SDGSERPYRCKIRAPGFAHLGAFDHIARGHFLPDAVAII 470
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 58/65 (89%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NEQ +SLAVEKLLN+EVP R +Y
Sbjct: 129 DPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNEQVFSLAVEKLLNLEVPERGQY 188
Query: 370 IRVMF 374
IR +F
Sbjct: 189 IRTLF 193
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 2 KYVVLYPDKEE-TKWKIINWNDNLVPVEK-QIRNMVINFGPQHPAAHGVLLLFAEI 55
KY D E W + N + PV++ +IR+ +NFGPQHPAAHGVL L E+
Sbjct: 65 KYEEFAKDAHEWESWNLQNEDHPEYPVKRTKIRHFTLNFGPQHPAAHGVLRLILEL 120
>gi|197131010|gb|ACH47055.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
gi|205277649|gb|ACI02098.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
gi|205277651|gb|ACI02100.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
gi|217331576|gb|ACK38302.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
Length = 396
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 167/286 (58%), Positives = 215/286 (75%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK+ EFYER SGARMHA+Y
Sbjct: 99 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLFEFYERVSGARMHASY 158
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GL +DI+ F F++R+DE+E+MLT NR+W QR D+GIV+AE+AL++
Sbjct: 159 VRPGGVAQDLPSGLSEDIFLFTQEFASRIDELEEMLTNNRIWKQRLVDIGIVTAEEALDW 218
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y+ +FD+P+GT G+ I ++EMR+SLRI+ Q
Sbjct: 219 GFSGVMLRGSGVCWDLRKAAPYDVYDLLDFDVPVGTRGDCYDRYRIRIEEMRESLRIMVQ 278
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGA-TYTAVEAPKG 263
+NKMP G ++ DD K+ PSRSEMK + VP + TY AVEAPKG
Sbjct: 279 CLNKMPSGMIKADDCKLCPPSRSEMKQSMESLIHHFKHYTECFSVPASSPTYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVS+GT++PYRC+I+APGFAHL L+ + K LAD+V II
Sbjct: 339 EFGVFLVSNGTNRPYRCRIRAPGFAHLQGLDFMSKHHMLADVVTII 384
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+L N E
Sbjct: 35 GELVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLCNCE 94
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 95 VPLRAQYIRVLFC 107
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K+I N +NFGPQHPAAHGVL L E+
Sbjct: 7 KRIDNFTLNFGPQHPAAHGVLRLVLEM 33
>gi|371907966|emb|CAP18136.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
sp. 421]
Length = 373
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 168/282 (59%), Positives = 213/282 (75%), Gaps = 22/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TP W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 88 IRVIFAEITRILNHLLAVGCHAIDVGAITPILWSFEEREKLIEFYERVSGARIHAAYFRP 147
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+VSA +A+ +GFS
Sbjct: 148 GGVSLDLPLGLIDDIYVFIIQFSTRLDEIEELLTSNRIWKQRLVDIGVVSASEAIAHGFS 207
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ +I ++E+RQSL+I+ Q +N
Sbjct: 208 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLIRLEEIRQSLKIIHQCLN 267
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 268 NIPQGPVR--DENISPPSRTNLKSSIESLIHHFKLYTEGVVVPSGETYTATEAPKGEFGV 325
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVS+GT++PYRCKIK+PGF HL AL I KG +AD+V II
Sbjct: 326 YLVSNGTNRPYRCKIKSPGFNHLQALNHICKGHIIADVVTII 367
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL +
Sbjct: 21 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLQCK 80
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 81 VPIRSIYIRVIFA 93
>gi|316996031|dbj|BAD83554.2| NADH dehydrogenase subunit 7 (mitochondrion) [Nicotiana tabacum]
Length = 394
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCIDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y+ +FDIP+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRKAAPYDVYDQLDFDIPVGTRGDCYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRSRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+QI+N +NFGPQHPAAHGVL L E+
Sbjct: 6 RQIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|164655213|ref|XP_001728737.1| hypothetical protein MGL_4072 [Malassezia globosa CBS 7966]
gi|159102621|gb|EDP41523.1| hypothetical protein MGL_4072 [Malassezia globosa CBS 7966]
Length = 462
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 164/279 (58%), Positives = 208/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L+ E+TRI NH MAV +H +DVG +TPF W EEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 172 LYGELTRISNHCMAVLSHIMDVGGLTPFVWGLEEREKIMEFYERVSGARMHAAYVRPGGV 231
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
D+P GLLDDIYH+ + F+ R+DE+E+++T NR+W +RT +G VSA+DALNYGFSGVM
Sbjct: 232 TYDLPPGLLDDIYHWATQFAGRVDEIEELVTGNRVWRERTIGIGKVSAKDALNYGFSGVM 291
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EFD+P+G +G+ ++E RQSLRI+ Q +NKMP
Sbjct: 292 LRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCFDRYLCRIEEFRQSLRIIHQCLNKMP 351
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G+++ DD KI+ PSRS MK G+ VPPG TY+A+EAPKGE GVYLV
Sbjct: 352 AGQIKVDDHKIAPPSRSMMKESMESLIHHFKLFSEGFTVPPGETYSAIEAPKGEMGVYLV 411
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
S+GT++PYRC I APGF HLA + + + +L D+VAII
Sbjct: 412 SNGTNRPYRCSISAPGFRHLAGADFVARHHYLPDMVAII 450
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 60/66 (90%)
Query: 309 IDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAK 368
+DPH+GLLHRGTEKLIEYKTYTQALPYFDRLDY SMM NE C++ AVEKLLNIEVP RAK
Sbjct: 108 VDPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYSSMMTNELCFARAVEKLLNIEVPERAK 167
Query: 369 YIRVMF 374
+IR ++
Sbjct: 168 WIRTLY 173
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ +R+ +NFGPQHPAAHGVL L E+
Sbjct: 73 DANLRHFTVNFGPQHPAAHGVLRLIMELN 101
>gi|15150763|ref|NP_150429.1| NADH dehydrogenase subunit 7 [Pylaiella littoralis]
gi|3122570|sp|Q37720.1|NDUS2_PYLLI RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|728615|emb|CAA88557.1| NADH dehydrogenase (ubiquinone), subunit 7 [Pylaiella littoralis]
gi|15147769|emb|CAC50870.1| NADH dehydrogenase subunit 7 [Pylaiella littoralis]
Length = 398
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/285 (59%), Positives = 211/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQFIRVLFAEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ DI +GL+DDI+ F++ F RLDE+E+MLT+NR+W +R D+G+VSA++A+++
Sbjct: 162 FRPGGVSQDISVGLVDDIFAFVAQFGQRLDEIEEMLTDNRIWQERLVDIGVVSAQEAIDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQ 219
GFSGVMLRGSGI+WDLRK +PY+ Y + F +G G+ ++EMRQSL I+ Q
Sbjct: 222 GFSGVMLRGSGIRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G V+ DD KIS PSRSE+K G VP G TYTA EAPKGE
Sbjct: 282 CLNKMPRGSVKIDDAKISPPSRSEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS G+S+PYRCKIKAPGF+HL L + LAD+V II
Sbjct: 342 FGVYLVSKGSSRPYRCKIKAPGFSHLQGLNFMACSHMLADVVTII 386
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVSMMC E Y+L+VE LL +
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDYVSMMCQEHTYALSVENLLQVS 97
Query: 363 VPLRAKYIRVMFT 375
+P RA++IRV+F
Sbjct: 98 IPRRAQFIRVLFA 110
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 33 NMVINFGPQHPAAHGVLLLFAEIT 56
+ INFGPQHPAAHGVL L E+
Sbjct: 14 HFTINFGPQHPAAHGVLRLILELN 37
>gi|134118060|ref|XP_772411.1| hypothetical protein CNBL2770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255024|gb|EAL17764.1| hypothetical protein CNBL2770 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 452
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 162 LFGEITRVLNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 221
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + FS+R+DEVE+++T NR+W QRT +G V+A+ AL+Y FSGVM
Sbjct: 222 AFDLPHGLLDDIFKWATQFSSRVDEVEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSGVM 281
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EFD+P+G +G+ + ++E R+SLRI+ Q +NK+P
Sbjct: 282 LRGSGIPWDIRKVAPYDAYDKVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIGQCLNKIP 341
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G + DD KI P R+ MK GY VPPG TY A+EAPKGE GVYLV
Sbjct: 342 DGAYKVDDHKIVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMGVYLV 401
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PY+CKI+APGFAHLA + + + FL D VAII
Sbjct: 402 SDGTNRPYKCKIRAPGFAHLAGADFMMRHHFLPDAVAII 440
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYK YTQALPYFDRLDYVSMM NE YS+AVE+LLNIEVP RAK+
Sbjct: 99 DPHIGLLHRGTEKLIEYKNYTQALPYFDRLDYVSMMTNELSYSIAVERLLNIEVPERAKW 158
Query: 370 IRVMF 374
IR +F
Sbjct: 159 IRTLF 163
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E ++R+ +NFGPQHPAAHGVL L E+
Sbjct: 63 EAEMRHFTVNFGPQHPAAHGVLRLILELN 91
>gi|58270580|ref|XP_572446.1| NADH-ubiquinone oxidoreductase [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228704|gb|AAW45139.1| NADH-ubiquinone oxidoreductase, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 452
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 162 LFGEITRVLNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 221
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + FS+R+DEVE+++T NR+W QRT +G V+A+ AL+Y FSGVM
Sbjct: 222 AFDLPHGLLDDIFKWATQFSSRVDEVEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSGVM 281
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EFD+P+G +G+ + ++E R+SLRI+ Q +NK+P
Sbjct: 282 LRGSGIPWDIRKVAPYDAYDKVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIGQCLNKIP 341
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G + DD KI P R+ MK GY VPPG TY A+EAPKGE GVYLV
Sbjct: 342 DGAYKVDDHKIVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMGVYLV 401
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PY+CKI+APGFAHLA + + + FL D VAII
Sbjct: 402 SDGTNRPYKCKIRAPGFAHLAGADFMMRHHFLPDAVAII 440
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYK YTQALPYFDRLDYVSMM NE YS+AVE+LLNIEVP RAK+
Sbjct: 99 DPHIGLLHRGTEKLIEYKNYTQALPYFDRLDYVSMMTNELSYSIAVERLLNIEVPERAKW 158
Query: 370 IRVMF 374
IR +F
Sbjct: 159 IRTLF 163
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E ++R+ +NFGPQHPAAHGVL L E+
Sbjct: 63 EAEMRHFTVNFGPQHPAAHGVLRLILELN 91
>gi|371908012|emb|CAP18824.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Botrydium
cystosum]
Length = 362
Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/282 (59%), Positives = 213/282 (75%), Gaps = 22/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNH++AVG HA+D+GA+TPF W FEEREK++EFYER SGAR+HAAY+RP
Sbjct: 83 IRVLFAEITRILNHLLAVGCHAIDIGAITPFLWAFEEREKLIEFYERVSGARIHAAYIRP 142
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+P GL+DDIY F FS RLDE+E++LT NR+W QR D+G+V+A DAL GFS
Sbjct: 143 GGVSIDLPSGLIDDIYVFAMQFSTRLDEIEEILTSNRIWKQRLVDIGLVNASDALALGFS 202
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGI WDLR QPYD Y + +F++P+GT G+ +I ++E+RQSLRI+ Q +N
Sbjct: 203 GVMLRGSGINWDLRVSQPYDVYSSIDFEVPLGTKGDCYDRYLIRLEEIRQSLRIIHQCLN 262
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
K+P G V D IS PSR +K G+ VP G TYTA EAPKGEFGV
Sbjct: 263 KIPLGPVH--DENISPPSRVNLKSSIESLIHHFKLYSEGFVVPCGETYTATEAPKGEFGV 320
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVS+GT++PYRCKIKAPGF HL AL+ + KG +AD+V II
Sbjct: 321 YLVSNGTNRPYRCKIKAPGFNHLQALDFMCKGHIVADVVTII 362
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ EQ YSLAVEKLLN +
Sbjct: 16 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEQTYSLAVEKLLNCK 75
Query: 363 VPLRAKYIRVMFT 375
+P+R+ YIRV+F
Sbjct: 76 IPIRSIYIRVLFA 88
>gi|295311695|ref|YP_003587352.1| NADH dehydrogenase subunit 7 [Cucurbita pepo]
gi|259156823|gb|ACV96684.1| NADH dehydrogenase subunit 7 [Cucurbita pepo]
Length = 394
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 161/285 (56%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y+ +FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRSRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMAKHHMLADVVTII 382
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++QI N +NFGPQHPAAHGVL L E+
Sbjct: 5 KRQITNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|295311652|ref|YP_003587260.1| NADH dehydrogenase subunit 7 [Citrullus lanatus]
gi|259156780|gb|ACV96642.1| NADH dehydrogenase subunit 7 [Citrullus lanatus]
Length = 394
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 161/285 (56%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y+ +FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRSRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+QI+N +NFGPQHPAAHGVL L E+
Sbjct: 6 RQIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|260947394|ref|XP_002617994.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Clavispora lusitaniae ATCC 42720]
gi|238847866|gb|EEQ37330.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Clavispora lusitaniae ATCC 42720]
Length = 472
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 207/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH M+V +H +DVG +TPF W FEEREK+MEFYER SGAR+H AYVRPGGV
Sbjct: 182 MFGEITRILNHCMSVLSHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHTAYVRPGGV 241
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F R+DE E+++T+NR+W RT+DVG+V+AEDALNY SGVM
Sbjct: 242 SQDLPAGLLDDIYMWATQFGDRIDETEELVTDNRIWKNRTQDVGVVTAEDALNYSMSGVM 301
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ +D+RK QPYD YE +FD+ +G +G+ ++ M E RQSLRI+EQ IN MP
Sbjct: 302 LRGSGVPYDIRKAQPYDAYELVDFDVAVGLNGDCYDRYLVRMVEFRQSLRIIEQCINDMP 361
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P RS M KGY VP G TYT +EAPKGE GVY+V
Sbjct: 362 EGPVKVEDYKISPPPRSLMKEDMEALIHHFLLFTKGYAVPQGETYTVIEAPKGEMGVYVV 421
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + + +G+ LAD VAII
Sbjct: 422 SDGSERPYRCKIRAPGFAHLGAFDHVARGNLLADAVAII 460
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NE ++LAVEKLLN+EVPLRAKY
Sbjct: 119 DPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKY 178
Query: 370 IRVMF 374
IR MF
Sbjct: 179 IRTMF 183
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 27/38 (71%), Gaps = 3/38 (7%)
Query: 21 NDNLVPVEKQ---IRNMVINFGPQHPAAHGVLLLFAEI 55
+D+ VEKQ IR+ INFGPQHPAAHGVL L E+
Sbjct: 73 DDDPKKVEKQNTKIRHFTINFGPQHPAAHGVLRLILEL 110
>gi|112253844|ref|YP_717100.1| NADH dehydrogenase subunit 7 [Brassica napus]
gi|37591046|dbj|BAC98848.1| NADH dehydrogenase subunit 7 [Brassica napus]
Length = 394
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 161/285 (56%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y+ +FD+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVEKLLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++QI+N +NFGPQHPAAHGVL L E+
Sbjct: 5 KRQIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|395334717|gb|EJF67093.1| NADH-ubiquinone oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 475
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 163/279 (58%), Positives = 214/279 (76%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+MAV +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 185 LFGEITRILNHLMAVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 244
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DI+ + + FS+R+DE+E+++T NR+W +RT +G+V+A+ AL+Y FSGVM
Sbjct: 245 AFDLPHGLLEDIFKWATQFSSRVDEIEEVVTGNRIWKERTIGIGVVTAKQALDYSFSGVM 304
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RKV PYD Y+ EFD+P+G +G+ + ++E R+SLRI+ Q +NK+P
Sbjct: 305 LRGSGVPWDIRKVAPYDKYDEVEFDVPVGKNGDCYDRYLCRVQEFRESLRIISQCLNKIP 364
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ DD K+ P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 365 TGAVKVDDYKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMGVYLV 424
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PYRCKI+APGFAHLA + + + +AD+VAII
Sbjct: 425 SDGTNRPYRCKIRAPGFAHLAGADFMMRRHMIADVVAII 463
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RAK+
Sbjct: 122 DPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKW 181
Query: 370 IRVMF 374
IR +F
Sbjct: 182 IRTLF 186
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E Q+R+ +NFGPQHPAAHGVL L E+
Sbjct: 86 ETQLRHFTVNFGPQHPAAHGVLRLILELN 114
>gi|314908354|gb|ADT62124.1| NADH dehydrogenase subunit 7 [Isoetes engelmannii]
Length = 396
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 167/286 (58%), Positives = 214/286 (74%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK+ EFYER SGARMHA+Y
Sbjct: 99 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLFEFYERVSGARMHASY 158
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GL +DI+ F F++R+DE+E+MLT NR+W QR D+GIV+AE+AL++
Sbjct: 159 VRPGGVAQDLPSGLSEDIFLFTQEFASRIDELEEMLTNNRIWKQRLVDIGIVTAEEALDW 218
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y+ +FD+P+GT G+ I ++EMR+SLRI+ Q
Sbjct: 219 GFSGVMLRGSGVCWDLRKAAPYDVYDLLDFDVPVGTRGDCYDRYRIRIEEMRESLRIMVQ 278
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPG-ATYTAVEAPKG 263
+NKMP G ++ DD K+ PSRSEMK + VP TY AVEAPKG
Sbjct: 279 CLNKMPSGMIKADDCKLCPPSRSEMKQSMESLIHHFKHYTECFSVPASPPTYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVS+GT++PYRC+I+APGFAHL L+ + K LAD+V II
Sbjct: 339 EFGVFLVSNGTNRPYRCRIRAPGFAHLQGLDFMSKHHMLADVVTII 384
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+L N E
Sbjct: 35 GELVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLCNCE 94
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 95 VPLRAQYIRVLFC 107
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K+I N +NFGPQHPAAHGVL L E+
Sbjct: 7 KRIDNFTLNFGPQHPAAHGVLRLVLEM 33
>gi|389624553|ref|XP_003709930.1| hypothetical protein MGG_09285 [Magnaporthe oryzae 70-15]
gi|351649459|gb|EHA57318.1| hypothetical protein MGG_09285 [Magnaporthe oryzae 70-15]
gi|440471602|gb|ELQ40591.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Magnaporthe oryzae
Y34]
gi|440481960|gb|ELQ62490.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Magnaporthe oryzae
P131]
Length = 488
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 163/279 (58%), Positives = 207/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITR+LNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 198 MFGEITRVLNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 257
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP GLLDDIY + + F R+DE E+MLT+NR+WI R + VG+VSA++AL+ F+GVM
Sbjct: 258 HQDIPAGLLDDIYQWATQFGDRIDETEEMLTDNRIWINRLQGVGVVSAKEALDLSFTGVM 317
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK PYD Y+ EFDIP+G +G+ + M+E RQSLRI+ Q +N+MP
Sbjct: 318 LRGSGVPWDIRKSSPYDAYDKVEFDIPVGLNGDCYDRYLCRMEEFRQSLRIIHQCLNQMP 377
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D K+S P R+ M KGY VPPG TY+ +EAPKGE GVY+V
Sbjct: 378 AGPVRVEDYKVSPPPRAAMKENMEALIHHFLLYTKGYAVPPGDTYSVIEAPKGEMGVYVV 437
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHLA + + KG LAD VA+I
Sbjct: 438 SDGSERPYRVHIRAPGFAHLAGFDHVCKGHLLADAVAVI 476
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQC++LAVEKLLNIE+P RAKY
Sbjct: 135 DPHVGLLHRGTEKLCEYKTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNIEIPERAKY 194
Query: 370 IRVMF 374
IR MF
Sbjct: 195 IRTMF 199
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E++IR+ +NFGPQHPAAHGVL L E++
Sbjct: 99 ERKIRHYTVNFGPQHPAAHGVLRLILELS 127
>gi|430813138|emb|CCJ29482.1| unnamed protein product [Pneumocystis jirovecii]
Length = 426
Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITRILNH+MAV +HA+DVGA+TPF W EEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 136 MFGEITRILNHLMAVLSHAMDVGALTPFLWGLEEREKLMEFYERVSGARLHAAYVRPGGV 195
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+PIGLLDDIY + + F R+DE E++LT+NR+W RT +G V+A DALNY FSG M
Sbjct: 196 SQDLPIGLLDDIYAWATQFGDRIDETEELLTDNRIWKARTVGIGRVNAMDALNYSFSGPM 255
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EF +P+G +G+ +I ++E+R+SL I+ Q +NKMP
Sbjct: 256 LRGSGIPWDIRKVAPYDAYDKVEFGVPVGQNGDCYDRYLIRIQELRESLNIIYQCLNKMP 315
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ DD KIS P R+ M KGY VPPG TYTA+EAPKGE GVY+V
Sbjct: 316 EGPVKVDDWKISPPPRAAMKENMEAMIHHFLLFTKGYSVPPGETYTAIEAPKGEMGVYVV 375
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHLA + I + +L D+VAII
Sbjct: 376 SDGSERPYRCKIRAPGFAHLAGADMISRNHYLPDMVAII 414
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIEVP R ++
Sbjct: 73 DPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEVPERGQF 132
Query: 370 IRVMF 374
IR MF
Sbjct: 133 IRTMF 137
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++ +IR+ +NFGPQHPAAHGVL L E+
Sbjct: 36 IDSKIRHFTVNFGPQHPAAHGVLRLILELN 65
>gi|372450291|ref|YP_005090473.1| NADH dehydrogenase subunit 7 (mitochondrion) [Lotus japonicus]
gi|357197337|gb|AET62933.1| NADH dehydrogenase subunit 7 (mitochondrion) [Lotus japonicus]
Length = 394
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 162/285 (56%), Positives = 211/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TP W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPSLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y+ +FD+P+GT G+ I M+EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRMEEMRQSLRIILQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNKMPSGMIKADDRKLCPPSRCRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEIT 56
QI+N +NFGPQHPAAHGVL L E+
Sbjct: 7 QIQNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|88658000|ref|YP_507426.1| NADH dehydrogenase subunit D [Ehrlichia chaffeensis str. Arkansas]
gi|123493275|sp|Q2GGK7.1|NUOD_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88599457|gb|ABD44926.1| NADH dehydrogenase I, D subunit [Ehrlichia chaffeensis str.
Arkansas]
Length = 393
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 162/280 (57%), Positives = 212/280 (75%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++F E+TRILNH++ + + ALD+GAMTP W+FEEREK++ FYERASGAR H+AY+RPGG
Sbjct: 102 VIFCELTRILNHLLNISSQALDIGAMTPLLWMFEEREKILGFYERASGARFHSAYIRPGG 161
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA D+P L+DDI+ FI TF +D+V+++LTENR+W QR D+GIVS E AL++GFSG
Sbjct: 162 VAADVPDDLIDDIFKFIKTFPKFIDDVDELLTENRIWKQRNVDIGIVSKEQALDWGFSGP 221
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR GI WDLRK QPY+ YE+ EF+IPIG G+ ++ M E+RQS++++EQ +N++
Sbjct: 222 MLRACGIPWDLRKSQPYEIYEDLEFEIPIGKKGDCYDRYLVRMAEIRQSIKLLEQCLNRL 281
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G ++TDD KI+ P RSEMK GY VP G TY AVEAPKGEFGVY+
Sbjct: 282 PNGPIKTDDRKIAPPKRSEMKESMEALIHHFKLYSEGYSVPIGETYMAVEAPKGEFGVYI 341
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRC+I+APGFAHL A++ + KG LAD+ AII
Sbjct: 342 VSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAII 381
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS MC E YSL VEKLL E
Sbjct: 33 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMCQEHAYSLCVEKLLKCE 92
Query: 363 VPLRAKYIRVMFT 375
+P+RAKY+RV+F
Sbjct: 93 IPIRAKYLRVIFC 105
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 6 KITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHI 43
>gi|61097780|emb|CAI64462.1| NADH-Ubiquinone oxidoreductase subunit 7 [Nicotiana sylvestris]
Length = 394
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCIDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y+ +FDIP+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRKAAPYDVYDQLDFDIPVGTRGDCYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRSRMKLSMESLIHHFELYTEGFSVPALSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+QI+N +NFGPQHPAAHGVL L E+
Sbjct: 6 RQIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|371907996|emb|CAP18816.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Tribonema
minus]
Length = 353
Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 167/282 (59%), Positives = 212/282 (75%), Gaps = 22/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGARMHAAY RP
Sbjct: 74 IRVIFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARMHAAYFRP 133
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+P+GL+DDIY FI FS RLDE+E++L+ NR+W QR D+G+VSA A+ YGFS
Sbjct: 134 GGVSIDLPLGLIDDIYVFIMQFSTRLDEIEEILSTNRIWKQRLVDIGVVSAHHAIAYGFS 193
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ ++ ++E+RQSL I+ Q +N
Sbjct: 194 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLLRLEEIRQSLSIIHQCLN 253
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 254 NIPSGPVR--DENISPPSRTNLKSSIEGLIHHFKLYSEGLVVPSGETYTATEAPKGEFGV 311
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVS+G+++PYRCKIKAPGF HL +L I KG +AD+V II
Sbjct: 312 YLVSNGSNRPYRCKIKAPGFNHLQSLNFICKGHIIADVVTII 353
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y+LAVE LL +
Sbjct: 7 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYALAVENLLIAK 66
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 67 VPIRSIYIRVIFA 79
>gi|405124300|gb|AFR99062.1| NADH-ubiquinone oxidoreductase [Cryptococcus neoformans var. grubii
H99]
Length = 452
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 162 LFGEITRVLNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 221
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + FS+R+DEVE+++T NR+W QRT +G V+A+ AL+Y FSGVM
Sbjct: 222 AFDLPHGLLDDIFKWATQFSSRVDEVEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSGVM 281
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EFD+P+G +G+ + ++E R+SLRI+ Q +NK+P
Sbjct: 282 LRGSGIPWDIRKVAPYDAYDKVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIGQCLNKIP 341
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G + DD KI P R+ MK GY VPPG TY A+EAPKGE GVYLV
Sbjct: 342 DGAYKVDDHKIVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMGVYLV 401
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PY+CKI+APGFAHLA + + + FL D VAII
Sbjct: 402 SDGSNRPYKCKIRAPGFAHLAGADFMMRHHFLPDAVAII 440
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYK YTQALPYFDRLDYVSMM NE YS+AVE+LLNIEVP RAK+
Sbjct: 99 DPHIGLLHRGTEKLIEYKNYTQALPYFDRLDYVSMMTNELSYSIAVERLLNIEVPERAKW 158
Query: 370 IRVMF 374
IR +F
Sbjct: 159 IRTLF 163
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E ++R+ +NFGPQHPAAHGVL L E+
Sbjct: 63 EAEMRHFTVNFGPQHPAAHGVLRLILELN 91
>gi|11465869|ref|NP_066418.1| NADH dehydrogenase subunit 7 [Ochromonas danica]
gi|10505202|gb|AAG18384.1|AF287134_9 NADH dehydrogenase subunit 7 [Ochromonas danica]
Length = 398
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 169/301 (56%), Positives = 223/301 (74%), Gaps = 25/301 (8%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKM 88
++I N+VI P+ A + +FAEITR+LNH++AVG HA+DVGAMTPF W FEEREK+
Sbjct: 91 EKIGNIVI---PER--AKIIRTIFAEITRLLNHLLAVGCHAMDVGAMTPFLWAFEEREKL 145
Query: 89 MEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQ 148
MEFYER SGARMHAAY+RPGGV++DIP+GLLDD+Y F++ F+ RLDE+E+MLT++R+W +
Sbjct: 146 MEFYERVSGARMHAAYIRPGGVSMDIPLGLLDDLYIFVNQFNYRLDEMEEMLTKSRIWKE 205
Query: 149 RTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN----- 203
R D+G+VSA A+ +GFSGVMLRGSGI WDLRK QPY+ Y +F IP+G G+
Sbjct: 206 RLVDIGVVSAAKAIEWGFSGVMLRGSGISWDLRKNQPYEIYSEIDFSIPVGNSGDCYDRY 265
Query: 204 VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYP 248
++ ++EMRQS+ I+ + + K+ G +++++ KIS PSR EMK G+
Sbjct: 266 LVRVEEMRQSIYIISKCLTKIKEGPIKSNNYKISPPSRLEMKNSMEAVIHHFKYFSEGFV 325
Query: 249 VPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAI 308
+P G TYT+ EAPKGEFGVYLVS+ T KPYRCKIKAPGF HL AL + KG +AD+V I
Sbjct: 326 LPCGETYTSTEAPKGEFGVYLVSNNTEKPYRCKIKAPGFGHLQALNDMSKGHLIADVVTI 385
Query: 309 I 309
I
Sbjct: 386 I 386
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVSMM E YSLA+EK+ NI
Sbjct: 38 GEVVEKADPHIGLLHRGTEKLIEFKTYLQALPYFDRLDYVSMMAQEHTYSLAIEKIGNIV 97
Query: 363 VPLRAKYIRVMFT 375
+P RAK IR +F
Sbjct: 98 IPERAKIIRTIFA 110
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+++N INFGPQHPAAHGVL L E+
Sbjct: 11 ELKNFTINFGPQHPAAHGVLRLILEL 36
>gi|344233312|gb|EGV65185.1| NADH-ubiquinone oxidoreductase 49 kDa subunit mitochondrial
precursor [Candida tenuis ATCC 10573]
Length = 472
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 206/279 (73%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH M+V +H +DVG +TPF W FEEREK+MEFYER SGAR+H AY RPGGV
Sbjct: 182 LFGEITRILNHCMSVLSHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHTAYFRPGGV 241
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F R+DEVE++ T+NR+W RT+DVG+V+AEDALNY SGVM
Sbjct: 242 SQDLPAGLLDDIYMWATQFGDRIDEVEELCTDNRIWKSRTQDVGVVTAEDALNYALSGVM 301
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ +FD+ +G +G+ +I M E RQSLRI+EQ IN MP
Sbjct: 302 LRGSGIPFDIRKSQPYDAYDLVDFDVAVGINGDCYDRYLIRMVEFRQSLRIIEQCINDMP 361
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D IS PSR+ M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 362 EGPVKVEDFNISPPSRAMMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVV 421
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G+ LAD VAII
Sbjct: 422 SDGSERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAII 460
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/65 (80%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NE ++LAVEKLLN+++PLRAKY
Sbjct: 119 DPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNELVFALAVEKLLNVDIPLRAKY 178
Query: 370 IRVMF 374
IR +F
Sbjct: 179 IRTLF 183
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 21 NDNLVPVEKQ---IRNMVINFGPQHPAAHGVLLLFAEI 55
+D+ V KQ IR+ INFGPQHPAAHGVL L E+
Sbjct: 73 DDDPKKVAKQNSKIRHFTINFGPQHPAAHGVLRLILEL 110
>gi|402586627|gb|EJW80564.1| NADH dehydrogenase [Wuchereria bancrofti]
Length = 476
Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 167/287 (58%), Positives = 210/287 (73%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L E+TRI NH+M V THALD+GAMTP FW+FEEREKM EF ERA GARMH+
Sbjct: 178 PRAKFIRTLMNELTRIQNHLMGVTTHALDIGAMTPLFWMFEEREKMFEFTERACGARMHS 237
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+P+G +DD+Y + F RLD +ED+LT NR+++ RT D+G+V AEDAL
Sbjct: 238 NYVRPGGVAWDLPLGWMDDVYDWTLRFPQRLDMMEDLLTGNRIFMARTVDIGLVKAEDAL 297
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
+GFSGVMLRGSGIKWD+RK QPYD Y+ +FD+P+G G+ +I M+EMR+S+RI+
Sbjct: 298 LWGFSGVMLRGSGIKWDVRKAQPYDAYDQVDFDVPVGVKGDCYDRYLIRMEEMRESVRII 357
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+ +NKMP GE++ DD K+ P R+EMK GY VPPGATY VEAPK
Sbjct: 358 FECLNKMPAGEIKVDDHKVVPPKRAEMKQSMESLIHHFKYYTEGYQVPPGATYVPVEAPK 417
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVS G SKPYRC ++PGF HLAA++ I S L+D+VA+I
Sbjct: 418 GEFGVYLVSQGESKPYRCFARSPGFPHLAAIDDICHLSMLSDVVAVI 464
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 61/72 (84%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
++V PHIGLLHRGTEKLIEYKTYTQA+PYFDR+DYVSMMCNE ++LAVEKLL I++
Sbjct: 117 EMVMKATPHIGLLHRGTEKLIEYKTYTQAVPYFDRMDYVSMMCNETAFALAVEKLLGIDI 176
Query: 364 PLRAKYIRVMFT 375
P RAK+IR +
Sbjct: 177 PPRAKFIRTLMN 188
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + ++NFGPQHPAAHGVL L E+
Sbjct: 87 EKPLHYYLLNFGPQHPAAHGVLRLVLEL 114
>gi|371908018|emb|CAP18827.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Bumilleria
sicula]
Length = 346
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 174/308 (56%), Positives = 219/308 (71%), Gaps = 34/308 (11%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWL 81
+NL+ + IR+M I ++FAEITRILNH++AVG HA+DVGA+TPF W
Sbjct: 52 ENLLQCKVPIRSMYIR------------VIFAEITRILNHLLAVGCHAMDVGAITPFLWA 99
Query: 82 FEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLT 141
FEEREK++EFYER SGARMHAAY RPGGV++D+P GL+DDIY FI FS RLDE+E++LT
Sbjct: 100 FEEREKLIEFYERVSGARMHAAYFRPGGVSIDLPYGLIDDIYVFIIQFSTRLDEIEEILT 159
Query: 142 ENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTH 201
NR+W QR D+G+V+A DA+ GFSGV+LRGSGI WDLR QPYD Y + F+IP+GT
Sbjct: 160 SNRIWKQRLVDIGVVNASDAIALGFSGVILRGSGINWDLRISQPYDVYSSLNFEIPVGTK 219
Query: 202 GN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK----------- 245
G+ ++ ++E+RQSL I+ Q +N +P G V+ D IS PSR+ +K
Sbjct: 220 GDCYDRYLLRVEEIRQSLSIIHQCLNGIPNGPVK--DENISPPSRTNLKSSIEALIHHFK 277
Query: 246 ----GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSF 301
G VP G TYTA EAPKGEFGVYLVS+GT++PYRCKIKAPGF HL AL I KG
Sbjct: 278 LYTEGVVVPSGETYTATEAPKGEFGVYLVSNGTNRPYRCKIKAPGFNHLQALNFICKGHI 337
Query: 302 LADIVAII 309
+AD+V II
Sbjct: 338 VADVVTII 345
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 58/71 (81%)
Query: 305 IVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVP 364
IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E YSLAVE LL +VP
Sbjct: 1 IVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYSLAVENLLQCKVP 60
Query: 365 LRAKYIRVMFT 375
+R+ YIRV+F
Sbjct: 61 IRSMYIRVIFA 71
>gi|344233313|gb|EGV65186.1| hypothetical protein CANTEDRAFT_113697 [Candida tenuis ATCC 10573]
Length = 433
Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 206/279 (73%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH M+V +H +DVG +TPF W FEEREK+MEFYER SGAR+H AY RPGGV
Sbjct: 143 LFGEITRILNHCMSVLSHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHTAYFRPGGV 202
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F R+DEVE++ T+NR+W RT+DVG+V+AEDALNY SGVM
Sbjct: 203 SQDLPAGLLDDIYMWATQFGDRIDEVEELCTDNRIWKSRTQDVGVVTAEDALNYALSGVM 262
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ +FD+ +G +G+ +I M E RQSLRI+EQ IN MP
Sbjct: 263 LRGSGIPFDIRKSQPYDAYDLVDFDVAVGINGDCYDRYLIRMVEFRQSLRIIEQCINDMP 322
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D IS PSR+ M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 323 EGPVKVEDFNISPPSRAMMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVV 382
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G+ LAD VAII
Sbjct: 383 SDGSERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAII 421
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/65 (80%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NE ++LAVEKLLN+++PLRAKY
Sbjct: 80 DPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNELVFALAVEKLLNVDIPLRAKY 139
Query: 370 IRVMF 374
IR +F
Sbjct: 140 IRTLF 144
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 21 NDNLVPVEKQ---IRNMVINFGPQHPAAHGVLLLFAEI 55
+D+ V KQ IR+ INFGPQHPAAHGVL L E+
Sbjct: 34 DDDPKKVAKQNSKIRHFTINFGPQHPAAHGVLRLILEL 71
>gi|84508548|ref|YP_448713.1| NADH dehydrogenase subunit 7 [Dictyota dichotoma]
gi|45925716|gb|AAS79097.1| NADH dehydrogenase subunit 7 (mitochondrion) [Dictyota dichotoma]
Length = 398
Score = 350 bits (897), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 167/285 (58%), Positives = 210/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQYIRVIFAEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+ +G+L+DIY F + F RLDE+E+MLT N +W R D+G+V+A +A+++
Sbjct: 162 FRPGGVSQDLSLGILNDIYSFCNQFGHRLDEIEEMLTSNPIWKLRLVDIGVVTAREAVDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK QPY+ Y +FDIP+G +G+ I ++EMRQSL I+ Q
Sbjct: 222 GFSGVMLRGSGLIWDLRKNQPYEVYPEIKFDIPVGVNGDCFDRYTIRIQEMRQSLNILYQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G V+ DD KIS PSR E+K G VP G TY A EAPKGE
Sbjct: 282 CLNKMPQGSVKVDDYKISPPSRVELKQNMEALIHHFKLYTEGVLVPVGETYIATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+S+GT++PYRCKIKAPGF+HL AL + LAD+V II
Sbjct: 342 FGVYLISNGTNRPYRCKIKAPGFSHLQALNLMSSSHMLADVVTII 386
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVSMMC E Y+LAVE LLN+
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIESKTYLQALPYFDRLDYVSMMCQEHTYALAVENLLNVS 97
Query: 363 VPLRAKYIRVMFT 375
+P RA+YIRV+F
Sbjct: 98 IPRRAQYIRVIFA 110
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 33 NMVINFGPQHPAAHGVLLLFAEIT 56
+ INFGPQHPAAHGVL L E+
Sbjct: 14 HFTINFGPQHPAAHGVLRLILELN 37
>gi|386800356|ref|YP_006280821.1| NADH dehydrogenase subunit 7 (mitochondrion) [Cyanophora paradoxa]
gi|321268726|gb|ADW79175.1| NADH dehydrogenase subunit 7 (mitochondrion) [Cyanophora paradoxa]
Length = 399
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 161/285 (56%), Positives = 216/285 (75%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+EITRILNH++AV HA+DVGA+TP W FEEREK+MEFYER SGARMHAAY
Sbjct: 103 AKWIRVIFSEITRILNHLLAVTCHAMDVGALTPLLWGFEEREKLMEFYERVSGARMHAAY 162
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV+ D+P GL +DIY F+ F +++E+E++LT NR+W QR D+G+V+A++A+++
Sbjct: 163 IRPGGVSQDLPNGLTNDIYEFVIQFENKINELEELLTNNRIWKQRLVDIGVVTAKEAIDW 222
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK + Y+ Y+N +F++P+G G+ +I ++EMRQS I++Q
Sbjct: 223 GFSGVMLRGSGVAWDLRKNEAYETYDNLDFEVPVGIRGDCYDRYLIRIEEMRQSCYIIQQ 282
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++NK+ G ++ DD KIS PSR+EMK GY VP G TY+ VEAPKGE
Sbjct: 283 SLNKLSSGPIKVDDNKISPPSRTEMKQSMESLIHHFKLYTEGYTVPKGETYSFVEAPKGE 342
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT+KPYRCKIKAPGFAHL L+ + K LAD+V II
Sbjct: 343 FGVYLVSNGTNKPYRCKIKAPGFAHLQGLDMMSKNHMLADVVTII 387
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMM E YSLAVEKLL
Sbjct: 39 GEIVKKADPHIGLLHRGTEKLIEYKNYNQALPYFDRLDYVSMMAQEHAYSLAVEKLLKCS 98
Query: 363 VPLRAKYIRVMFT 375
VPLRAK+IRV+F+
Sbjct: 99 VPLRAKWIRVIFS 111
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEIT 56
++N +NFGPQHPAAHGVL L E+
Sbjct: 13 LKNFTLNFGPQHPAAHGVLRLVLELN 38
>gi|296040739|gb|ADG85337.1| NADH dehydrogenase subunit 7 [Silene latifolia]
Length = 394
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 161/285 (56%), Positives = 211/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y +FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRRAAPYDVYHQLDFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNKMPSGMIKADDRKLCPPSRYRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+KQI+N +NFGPQHPAAHGVL L E+
Sbjct: 5 KKQIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|321264860|ref|XP_003197147.1| NADH-ubiquinone oxidoreductase [Cryptococcus gattii WM276]
gi|317463625|gb|ADV25360.1| NADH-ubiquinone oxidoreductase, putative [Cryptococcus gattii
WM276]
Length = 455
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 165 LFGEITRVLNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 224
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + FS+R+DE+E+++T NR+W QRT +G V+A+ AL+Y FSGVM
Sbjct: 225 AFDLPHGLLDDIFKWATQFSSRVDEIEEVVTGNRIWKQRTIGIGPVTAQQALDYSFSGVM 284
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EFD+PIG +G+ + ++E R+SLRI+ Q +NK+P
Sbjct: 285 LRGSGIPWDIRKVAPYDAYDKVEFDVPIGKNGDCYDRYLCRVQEFRESLRIIGQCLNKIP 344
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G + DD KI P R+ MK GY VPPG TY A+EAPKGE GVYLV
Sbjct: 345 DGAYKIDDHKIVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYAAIEAPKGEMGVYLV 404
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PY+CKI+APGFAHLA + + + FL D VAII
Sbjct: 405 SDGSNRPYKCKIRAPGFAHLAGADFMMRHHFLPDAVAII 443
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYK YTQALPYFDRLDYVSMM NE CYS+AVE+LLNIEVP RAK+
Sbjct: 102 DPHIGLLHRGTEKLIEYKNYTQALPYFDRLDYVSMMTNELCYSIAVERLLNIEVPERAKW 161
Query: 370 IRVMF 374
IR +F
Sbjct: 162 IRTLF 166
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E ++R+ +NFGPQHPAAHGVL L E+
Sbjct: 66 EAEMRHFTVNFGPQHPAAHGVLRLILELN 94
>gi|170583233|ref|XP_001896488.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial,
putative [Brugia malayi]
gi|158596293|gb|EDP34666.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial,
putative [Brugia malayi]
Length = 471
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 207/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L E+TRI NH+M V THALDVGAMTP FW+FEEREKM EF ERA GARMH+ YVRPGGV
Sbjct: 181 LMNELTRIQNHLMGVTTHALDVGAMTPLFWMFEEREKMFEFTERACGARMHSNYVRPGGV 240
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P+G +DD+Y + F RLD +ED+LT NR+++ RT D+G+V AEDAL +GFSGVM
Sbjct: 241 AWDLPLGWMDDVYDWALRFPQRLDMMEDLLTGNRIFMSRTVDIGLVKAEDALLWGFSGVM 300
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGIKWD+RK QPYD Y+ +FD+PIG G+ +I M+EMR+S+RI+ + +NKMP
Sbjct: 301 LRGSGIKWDIRKAQPYDAYDQVDFDVPIGVKGDCYDRYLIRMEEMRESVRIIFECLNKMP 360
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++ DD K+ P R+EMK GY VPPGATY VEAPKGEFGVYLV
Sbjct: 361 AGEIKVDDHKVVPPKRAEMKQNMESLIHHFKYYTEGYQVPPGATYVPVEAPKGEFGVYLV 420
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
S G SKPYRC ++PGF HLAA++ I S L+D+VA+I
Sbjct: 421 SHGESKPYRCFARSPGFPHLAAIDDICHLSMLSDVVAVI 459
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
++V PHIGLLHRGTEKLIEYKTYTQA+PYFDR+DYVSMMCNE ++LAVEKLL I++
Sbjct: 117 EMVMKATPHIGLLHRGTEKLIEYKTYTQAVPYFDRMDYVSMMCNETAFALAVEKLLGIDI 176
Query: 364 PLRA 367
P +
Sbjct: 177 PAKT 180
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + ++NFGPQHPAAHGVL L E+
Sbjct: 87 EKPLHYYLLNFGPQHPAAHGVLRLILEL 114
>gi|371907964|emb|CAP18135.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
sp. 889]
Length = 364
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 210/279 (75%), Gaps = 22/279 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TP W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 88 IRVIFAEITRILNHLLAVGCHAIDVGAITPILWSFEEREKLIEFYERVSGARIHAAYFRP 147
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY FI F+ RLDE+E++LT NR+W QR D+G+V+A DA+ +GFS
Sbjct: 148 GGVSLDLPLGLIDDIYVFIIQFATRLDELEELLTSNRIWKQRLVDIGVVTASDAIAHGFS 207
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ +I ++E+RQSL I+ Q +N
Sbjct: 208 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLIRLEEIRQSLSIIHQCLN 267
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
MP G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 268 NMPQGPVR--DENISPPSRTNLKSSIESLIHHFKLYTEGVVVPSGETYTATEAPKGEFGV 325
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIV 306
YLVS+GT++PYRCKIKAPGF HL AL I KG +AD+V
Sbjct: 326 YLVSNGTNRPYRCKIKAPGFNHLQALNHICKGHIIADVV 364
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL +
Sbjct: 21 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLQCK 80
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 81 VPIRSIYIRVIFA 93
>gi|371907984|emb|CAP18145.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
hormidioides]
Length = 358
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 210/279 (75%), Gaps = 22/279 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TP W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 82 IRVIFAEITRILNHLLAVGCHAIDVGAITPILWSFEEREKLIEFYERVSGARIHAAYFRP 141
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+V+A DA+ +GFS
Sbjct: 142 GGVSLDLPLGLIDDIYVFIIQFSTRLDELEELLTSNRIWKQRLVDIGLVTASDAIAHGFS 201
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ +I ++E+RQSL I+ Q +N
Sbjct: 202 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLIRLEEIRQSLSIIHQCLN 261
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 262 NIPQGPVR--DENISPPSRTNLKSSIESLIHHFKLYTEGVVVPSGETYTATEAPKGEFGV 319
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIV 306
YLVS+GT++PYRCKIKAPGF HL AL I KG +AD+V
Sbjct: 320 YLVSNGTNRPYRCKIKAPGFNHLQALNHICKGHIIADVV 358
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL +
Sbjct: 15 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLQSK 74
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 75 VPIRSIYIRVIFA 87
>gi|150866110|ref|XP_001385597.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Scheffersomyces stipitis CBS 6054]
gi|149387366|gb|ABN67568.2| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Scheffersomyces stipitis CBS 6054]
Length = 474
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 206/279 (73%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH M+V +H +DVG +TPF W FEEREK+MEFYER SGAR+H AYVRPGGV
Sbjct: 184 LFGEITRILNHCMSVLSHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHTAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P+GLLDDIY + + F R+DE E+++T+NR+W RT DVG+VSAEDALNY SGVM
Sbjct: 244 SQDLPVGLLDDIYMWATQFGDRIDETEELVTDNRIWKDRTVDVGVVSAEDALNYSLSGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ +FDI +G +G+ +I M E RQSLRI+ Q IN +P
Sbjct: 304 LRGSGIPFDIRKSQPYDAYDLVDFDIAVGMNGDCYDRYLIRMAEFRQSLRIIFQCINDIP 363
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P RS M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 364 EGPVKVEDYKISPPPRSVMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVV 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G+ LAD VAII
Sbjct: 424 SDGSERPYRCKIRAPGFAHLGAFDHISRGNLLADAVAII 462
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NE ++LAVEKLLN+E+PLRAKY
Sbjct: 121 DPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNELVFALAVEKLLNVEIPLRAKY 180
Query: 370 IRVMF 374
IR +F
Sbjct: 181 IRTLF 185
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 21 NDNLVPVEKQ---IRNMVINFGPQHPAAHGVLLLFAEI 55
+D+ V KQ IR+ INFGPQHPAAHGVL L E+
Sbjct: 75 DDDPKKVAKQNSKIRHFTINFGPQHPAAHGVLRLILEL 112
>gi|197941024|gb|ACH78248.1| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
Length = 394
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 211/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLR+ PYD Y+ +FD+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVEKLLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++QI+N +NFGPQHPAAHGVL L E+
Sbjct: 5 KRQIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|44889037|sp|P93306.2|NDUS2_ARATH RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2; AltName: Full=NADH dehydrogenase subunit 7
Length = 394
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 211/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLR+ PYD Y+ +FD+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDR DYVSMM E YSLAVEKLLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRSDYVSMMAQEHAYSLAVEKLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++QI+N +NFGPQHPAAHGVL L E+
Sbjct: 5 KRQIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|162279924|ref|NP_064055.2| nad7 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|323435033|ref|YP_004222248.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. maritima]
gi|346683126|ref|YP_004842055.1| NADH dehydrogenase subunit 7 [Beta macrocarpa]
gi|87248044|gb|ABD36076.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. vulgaris]
gi|148491428|dbj|BAA99447.2| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. vulgaris]
gi|317905686|emb|CBJ14080.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. maritima]
gi|319439766|emb|CBJ17489.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. maritima]
gi|345500044|emb|CBX24860.1| NADH dehydrogenase subunit 7 [Beta macrocarpa]
gi|384939222|emb|CBL52068.1| NADH dehydrogenase subunit 7 (mitochondrion) [Beta vulgaris subsp.
maritima]
Length = 391
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 95 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 155 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y+ +FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 215 GFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 275 CLNQMPSGMIKADDRKLCPPSRYRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 335 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 379
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 31 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 90
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 91 VPLRAQYIRVLFC 103
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ +QI+N +NFGPQHPAAHGVL L E+
Sbjct: 1 MNRQIKNFTLNFGPQHPAAHGVLRLVLEMN 30
>gi|320147997|emb|CBJ20663.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. maritima]
Length = 391
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 95 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 155 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y+ +FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 215 GFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 275 CLNQMPSGMIKADDRKLCPPSRYRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 335 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 379
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 31 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 90
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 91 VPLRAQYIRVLFC 103
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ +Q++N +NFGPQHPAAHGVL L E+
Sbjct: 1 MNRQMKNFTLNFGPQHPAAHGVLRLVLEMN 30
>gi|403417087|emb|CCM03787.1| predicted protein [Fibroporia radiculosa]
Length = 500
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/264 (60%), Positives = 205/264 (77%), Gaps = 20/264 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 184 LFGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 243
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DIY + S FS+R+DE+E+++T NR+W +RT +G+V+A+ AL+Y FSGVM
Sbjct: 244 AFDLPHGLLEDIYQWASQFSSRVDEIEEVVTGNRIWKERTIGIGVVTAKQALDYSFSGVM 303
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK+ PYD Y+ EFD+P+G +G+ + ++E R+SLRIV+Q +NKMP
Sbjct: 304 LRGSGVPWDIRKIAPYDKYDEVEFDVPVGKNGDCYDRYLCRVQEFRESLRIVDQCLNKMP 363
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ DD K+ P R+ MK GY VPPG TY+A+EAPKGE GVYL+
Sbjct: 364 TGAVKVDDYKLVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYSAIEAPKGEMGVYLI 423
Query: 271 SDGTSKPYRCKIKAPGFAHLAALE 294
SDGT++PYRCKI+APGFAHLA +
Sbjct: 424 SDGTNRPYRCKIRAPGFAHLAGAD 447
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RAK+
Sbjct: 121 DPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKW 180
Query: 370 IRVMF 374
IR +F
Sbjct: 181 IRTLF 185
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ Q+R+ +NFGPQHPAAHGVL L E+
Sbjct: 85 DAQMRHFTVNFGPQHPAAHGVLRLILELN 113
>gi|149235688|ref|XP_001523722.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452701|gb|EDK46957.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 483
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 166/279 (59%), Positives = 207/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH M+V TH +DVG +TPF W FEEREK+MEFYER SGAR+H+AYVRPGGV
Sbjct: 193 LFGEITRVLNHCMSVLTHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGV 252
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F R+DE+E++ T+NR+W +RT+ VG+V+A+DALNY SGVM
Sbjct: 253 SQDLPAGLLDDIYMWATQFGDRIDEIEELCTDNRIWKERTEGVGVVTADDALNYSLSGVM 312
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ +FDI +G +G+ +I M E RQSLRI+ Q IN MP
Sbjct: 313 LRGSGIPFDVRKSQPYDAYDLVDFDIAVGLNGDCYDRYLIRMAEFRQSLRIIFQCINDMP 372
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS PSR+ M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 373 QGPVKVEDYKISPPSRAIMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVV 432
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G LAD VAII
Sbjct: 433 SDGSERPYRCKIRAPGFAHLGAFDHIARGELLADAVAII 471
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NEQ ++LAVEKLLN+E+PLRAKY
Sbjct: 130 DPHVGLLHRGTEKLIETKTYMQALPYFDRLDYVSMMTNEQVFALAVEKLLNVEIPLRAKY 189
Query: 370 IRVMF 374
IR +F
Sbjct: 190 IRTLF 194
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++R+ INFGPQHPAAHGVL L E+
Sbjct: 96 KVRHFTINFGPQHPAAHGVLRLILEL 121
>gi|393246739|gb|EJD54247.1| NADH dehydrogenase I, D subunit [Auricularia delicata TFB-10046
SS5]
Length = 404
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF E+TRILNH+MAV TH +DVG +TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 114 LFGELTRILNHLMAVLTHVMDVGGLTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 173
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + FS+R+DE+E+++T NR+W +RT VG V+A+ AL+Y F+GVM
Sbjct: 174 AFDLPHGLLDDIFKWATQFSSRVDEIEEVVTGNRIWKERTVGVGKVTAQQALDYSFTGVM 233
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WDLRKV PYD Y+ EFD+P+G +G+ + ++E R+SL IV Q +NKMP
Sbjct: 234 LRGSGVPWDLRKVAPYDAYDRVEFDVPVGQNGDCYDRYLCRVQEFRESLNIVSQCLNKMP 293
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ DD K+ P R+ MK GY VPPG TYTA+EAPKGE GVYLV
Sbjct: 294 LGAVKVDDHKLVPPPRASMKESMESLIHHFKIFSEGYSVPPGETYTAIEAPKGEMGVYLV 353
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PYRC+I+APGF HLA + + + FLAD VAII
Sbjct: 354 SDGSNRPYRCRIRAPGFPHLAGADFMMRQHFLADAVAII 392
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE+KT+TQALPYFDRLDYVSMM NE YSLAVEKLLNIEVP RAK+
Sbjct: 51 DPHIGLLHRGTEKLIEFKTFTQALPYFDRLDYVSMMTNELVYSLAVEKLLNIEVPDRAKW 110
Query: 370 IRVMF 374
IR +F
Sbjct: 111 IRTLF 115
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E +R+ +NFGPQHPAAHGVL L E+
Sbjct: 15 EATLRHFTVNFGPQHPAAHGVLRLILELN 43
>gi|1363358|pir||S57332 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7 - wood
tobacco mitochondrion
Length = 394
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 161/285 (56%), Positives = 211/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCIDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD Y+ +FDIP+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRKAAPYDVYDQLDFDIPVGTRGDCYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRSRMKTSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+AP FAHL L+ + K LAD+V I
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPCFAHLQGLDFMSKHHMLADVVTTI 382
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+QI+N +NFGPQHPAAHGVL L E+
Sbjct: 6 RQIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|319738257|emb|CBJ18033.1| NADH dehydrogenase subunit 7 [Ectocarpus siliculosus]
Length = 398
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 165/285 (57%), Positives = 209/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITR+LNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQYIRVLFAEITRLLNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ DI +GL+DDI+ F+ F RLDE+E+MLT+NR+W +R D+G+VSA++A+++
Sbjct: 162 FRPGGVSQDISLGLVDDIFAFVVQFGQRLDEIEEMLTDNRIWQERLVDIGVVSAQEAIDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQ 219
GFSGVMLRGSG++WDLRK +PY+ Y + F +G G+ ++EMRQSL I+ Q
Sbjct: 222 GFSGVMLRGSGVRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N MP G V+ DD KIS PSR+E+K G VP G TYTA EAPKGE
Sbjct: 282 CLNNMPKGSVKVDDAKISPPSRTEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSD +++PYRCKIKAPGFAHL L + LAD+V II
Sbjct: 342 FGVYLVSDSSNRPYRCKIKAPGFAHLQGLNFMASSHMLADVVTII 386
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVSMMC E Y+LAVE LL I
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDYVSMMCQEHTYALAVENLLQIS 97
Query: 363 VPLRAKYIRVMFT 375
+P RA+YIRV+F
Sbjct: 98 IPKRAQYIRVLFA 110
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 33 NMVINFGPQHPAAHGVLLLFAEIT 56
+ INFGPQHPAAHGVL L E+
Sbjct: 14 HFTINFGPQHPAAHGVLRLILELN 37
>gi|57239170|ref|YP_180306.1| NADH dehydrogenase subunit D [Ehrlichia ruminantium str.
Welgevonden]
gi|58579126|ref|YP_197338.1| NADH dehydrogenase subunit D [Ehrlichia ruminantium str.
Welgevonden]
gi|81672806|sp|Q5HB88.1|NUOD_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|57161249|emb|CAH58168.1| NADH-quinone oxidoreductase chain D [Ehrlichia ruminantium str.
Welgevonden]
gi|58417752|emb|CAI26956.1| NADH-quinone oxidoreductase chain D [Ehrlichia ruminantium str.
Welgevonden]
Length = 393
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 161/280 (57%), Positives = 209/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++F E+TRILNH++ + + ALD+GAMTP W+FEEREK++ FYERASGAR H+AY+RPGG
Sbjct: 102 VIFCELTRILNHLLNISSQALDIGAMTPLLWMFEEREKILNFYERASGARFHSAYIRPGG 161
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA DIP L+ DI+ F++TF +D+V+ +LTENR+W QR D+G+VS + ALN+GFSG
Sbjct: 162 VAADIPEDLIHDIFQFVNTFPKFMDDVDSLLTENRIWKQRNVDIGVVSKKQALNWGFSGP 221
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR GI WDLRK QPY+ Y+ EF IPIG G+ ++ M E+R+S+R+VEQ +N++
Sbjct: 222 MLRACGIPWDLRKSQPYEIYDELEFKIPIGEKGDCYDRYLVRMAEIRESIRLVEQCLNRI 281
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+TDD KI+ P RSEMK GY VP G TY AVEAPKGEFGVY+
Sbjct: 282 PDGPVKTDDRKIAPPKRSEMKKSMEALIHHFKLYSEGYSVPAGETYMAVEAPKGEFGVYI 341
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRC+I+APGFAHL A++ + KG LAD+ AII
Sbjct: 342 VSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAII 381
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 33 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMAQEHAYSLCVEKLLKCE 92
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 93 VPIRAKYLRVIFC 105
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 6 KITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHI 43
>gi|406700529|gb|EKD03696.1| NADH-ubiquinone oxidoreductase [Trichosporon asahii var. asahii CBS
8904]
Length = 454
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 163/279 (58%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L EITRILNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 164 LMGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 223
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + F +R+DE+E+++T NR+W +RT +G V+A++AL+Y F+GVM
Sbjct: 224 AFDLPHGLLDDIFKWSTQFGSRVDEIEEVITGNRIWKERTIGIGKVTAQEALDYSFTGVM 283
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EF++P+G +G+ + ++E R+SL I+ Q +NKMP
Sbjct: 284 LRGSGIPWDIRKVAPYDAYDKVEFNVPVGKNGDCYDRYLCRVQEFRESLNIINQCLNKMP 343
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G +TDD KI P R+ MK GY VPPG TYTA+EAPKGE GVYLV
Sbjct: 344 AGAYKTDDNKIVPPPRASMKESMEALIHHFKLFSEGYSVPPGETYTAIEAPKGEMGVYLV 403
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PY+CKI+APGFAHLA + + + ++L D VAII
Sbjct: 404 SDGSNRPYKCKIRAPGFAHLAGADFMMRHAYLPDAVAII 442
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 58/64 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYK YTQALPYFDRLDYVSMM NE Y+LAVEKLLNIEVP RAK+
Sbjct: 101 DPHVGLLHRGTEKLIEYKNYTQALPYFDRLDYVSMMTNELSYTLAVEKLLNIEVPERAKW 160
Query: 370 IRVM 373
IR +
Sbjct: 161 IRTL 164
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E +R+ +NFGPQHPAAHGVL L E+
Sbjct: 65 EGNMRHFTVNFGPQHPAAHGVLRLILELN 93
>gi|255731902|ref|XP_002550875.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
gi|240131884|gb|EER31443.1| NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
Length = 475
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 206/279 (73%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH M+V TH +DVG +TPF W FEEREK+MEFYER SGAR+H+AYVRPGGV
Sbjct: 185 LFGEITRVLNHCMSVLTHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGV 244
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F R+DE+E++ T+NR+W RT VG VSAEDALNY SGVM
Sbjct: 245 SQDLPAGLLDDIYMWATQFGDRIDEIEELCTDNRIWKDRTIGVGYVSAEDALNYSLSGVM 304
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ +D+RK QPYD Y+ +FDI +G +G+ +I M E RQSLR++ Q IN MP
Sbjct: 305 LRGSGVPFDVRKSQPYDAYDLVDFDIAVGYNGDCYDRYLIRMAEFRQSLRVIFQCINDMP 364
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS PSR+ M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 365 EGPVKVEDYKISPPSRAVMKEDMEALIHHFLLFTKGYAVPAGETYTAIEAPKGEMAVYVV 424
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL AL+ I +G+ LAD VAII
Sbjct: 425 SDGSERPYRCKIRAPGFAHLGALDHIARGNLLADAVAII 463
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NEQ ++LAVEKLLN+E+PLRAKY
Sbjct: 122 DPHVGLLHRGTEKLIETKTYMQALPYFDRLDYVSMMTNEQVFALAVEKLLNVEIPLRAKY 181
Query: 370 IRVMF 374
IR +F
Sbjct: 182 IRTLF 186
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 9 DKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D W + D L +IR+ INFGPQHPAAHGVL L E+
Sbjct: 67 DNVNITWDKNDDPDKLSKQNTKIRHFTINFGPQHPAAHGVLRLILEL 113
>gi|401882845|gb|EJT47086.1| NADH-ubiquinone oxidoreductase [Trichosporon asahii var. asahii CBS
2479]
Length = 454
Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 163/279 (58%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L EITRILNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 164 LMGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 223
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDI+ + + F +R+DE+E+++T NR+W +RT +G V+A++AL+Y F+GVM
Sbjct: 224 AFDLPHGLLDDIFKWSTQFGSRVDEIEEVITGNRIWKERTIGIGKVTAQEALDYSFTGVM 283
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RKV PYD Y+ EF++P+G +G+ + ++E R+SL I+ Q +NKMP
Sbjct: 284 LRGSGIPWDIRKVAPYDAYDKVEFNVPVGKNGDCYDRYLCRVQEFRESLNIINQCLNKMP 343
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G +TDD KI P R+ MK GY VPPG TYTA+EAPKGE GVYLV
Sbjct: 344 AGAYKTDDNKIVPPPRASMKESMEALIHHFKLFSEGYSVPPGETYTAIEAPKGEMGVYLV 403
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+++PY+CKI+APGFAHLA + + + ++L D VAII
Sbjct: 404 SDGSNRPYKCKIRAPGFAHLAGADFMMRHAYLPDAVAII 442
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 58/64 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYK YTQALPYFDRLDYVSMM NE Y+LAVEKLLNIEVP RAK+
Sbjct: 101 DPHVGLLHRGTEKLIEYKNYTQALPYFDRLDYVSMMTNELSYTLAVEKLLNIEVPERAKW 160
Query: 370 IRVM 373
IR +
Sbjct: 161 IRTL 164
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E +R+ +NFGPQHPAAHGVL L E+
Sbjct: 65 EGNMRHFTVNFGPQHPAAHGVLRLILELN 93
>gi|307101737|ref|YP_003875501.1| NADH dehydrogenase subunit 7 [Silene latifolia]
gi|301338032|gb|ADK73324.1| NADH dehydrogenase subunit 7 [Silene latifolia]
Length = 394
Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 210/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLR+ PYD Y +FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDLRRAAPYDVYHQLDFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNKMPSGMIKADDRKLCPPSRYRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+KQI+N +NFGPQHPAAHGVL L E+
Sbjct: 5 KKQIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|372450285|ref|YP_005090468.1| NADH dehydrogenase subunit 7 (mitochondrion) [Millettia pinnata]
gi|357197331|gb|AET62928.1| NADH dehydrogenase subunit 7 (mitochondrion) [Millettia pinnata]
Length = 394
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 159/285 (55%), Positives = 211/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ +HA+DVGA+TP W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTSHAMDVGALTPSLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y+ +FD+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSLRIILQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNKMPSGMIKADDRKLCPPSRCRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V I+
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIL 382
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEIT 56
QI+N +NFGPQHPAAHGVL L E+
Sbjct: 7 QIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|371907972|emb|CAP18139.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
solidum]
Length = 365
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 167/281 (59%), Positives = 210/281 (74%), Gaps = 22/281 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TP W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 87 IRVIFAEITRILNHLLAVGCHAIDVGAITPILWSFEEREKLIEFYERVSGARIHAAYFRP 146
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+VSA DA+ +GFS
Sbjct: 147 GGVSLDLPLGLIDDIYVFIIQFSTRLDELEELLTSNRIWKQRFVDIGVVSASDAIAHGFS 206
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR PYD Y + +F+IP+GT G+ +I ++E+RQSL I+ Q +N
Sbjct: 207 GVILRGSGINWDLRISIPYDVYSSIKFEIPVGTKGDCYDRYLIRLEEIRQSLSIIHQCLN 266
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 267 NIPQGPVR--DENISPPSRTNLKSSIESLIHHFKLYTEGVVVPSGETYTATEAPKGEFGV 324
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAI 308
YLVS+GT++PYRCKIK+PGF HL AL I KG +AD+V I
Sbjct: 325 YLVSNGTNRPYRCKIKSPGFNHLQALNHICKGHIIADVVTI 365
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL +
Sbjct: 20 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLQSK 79
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 80 VPIRSIYIRVIFA 92
>gi|68469164|ref|XP_721369.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|68470189|ref|XP_720856.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|77022732|ref|XP_888810.1| hypothetical protein CaO19_6531 [Candida albicans SC5314]
gi|46442746|gb|EAL02033.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|46443284|gb|EAL02567.1| potential mitochondrial Complex I, NUCM_49kd subunit [Candida
albicans SC5314]
gi|76573623|dbj|BAE44707.1| hypothetical protein [Candida albicans]
gi|238883349|gb|EEQ46987.1| NADH-ubiquinone oxidoreductase 49 kDa subunit [Candida albicans
WO-1]
Length = 478
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 169/279 (60%), Positives = 204/279 (73%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH M+V TH +DVG +TPF W FEEREK+MEFYER SGAR+H AY RPGGV
Sbjct: 188 LFGEITRILNHCMSVLTHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHTAYFRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F R+DEVE++ T+NR+W RT VG+VSAEDALNY SGVM
Sbjct: 248 SQDLPAGLLDDIYMWATQFGDRIDEVEELCTDNRIWKDRTIGVGVVSAEDALNYSLSGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ +FDI +G +G+ +I M E RQSLRI+ Q IN +P
Sbjct: 308 LRGSGIPFDIRKSQPYDAYDLVDFDIAVGINGDCYDRYLIRMAEFRQSLRIIFQCINDIP 367
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS PSRS M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 368 EGPVKVEDYKISPPSRSLMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G+ LAD VAII
Sbjct: 428 SDGSERPYRCKIRAPGFAHLGAFDHIARGNLLADAVAII 466
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NE ++LAVEKLLN+EVPLRAKY
Sbjct: 125 DPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKY 184
Query: 370 IRVMF 374
IR +F
Sbjct: 185 IRTLF 189
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 29/43 (67%), Gaps = 5/43 (11%)
Query: 18 INWNDNLVP--VEKQ---IRNMVINFGPQHPAAHGVLLLFAEI 55
I W+ N P +EKQ IR+ INFGPQHPAAHGVL L E+
Sbjct: 74 ITWDKNDDPDRLEKQNTKIRHFTINFGPQHPAAHGVLRLILEL 116
>gi|56752771|gb|AAW24597.1| SJCHGC09267 protein [Schistosoma japonicum]
Length = 447
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 171/288 (59%), Positives = 207/288 (71%), Gaps = 35/288 (12%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LFAEITRI+NH +AVG+ LD+GA+TP FWLFEEREKM EFYER S
Sbjct: 162 PRAKYIRTLFAEITRIMNHCLAVGSTILDIGAITPIFWLFEEREKMFEFYERVS------ 215
Query: 103 AYVRPGGVALDIPIGLLDDI-YHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDA 161
L + + + Y FI F RLDE+ D+L +N +WI RTKDVG+VSAEDA
Sbjct: 216 --------VLVCTLHIFAQVVYRFIQKFPQRLDEISDLLLDNPIWITRTKDVGVVSAEDA 267
Query: 162 LNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRI 216
L+ GFSGVMLRGSGIKWDLRK QPYD Y + +FD+PIG HG+ +I M+EMRQSLRI
Sbjct: 268 LDLGFSGVMLRGSGIKWDLRKTQPYDAYADMDFDVPIGVHGDCYDRFMIRMEEMRQSLRI 327
Query: 217 VEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAP 261
+EQ +NKMP GE+R DD KI P R+EMK GY VPPG+TYTA+EAP
Sbjct: 328 IEQCLNKMPKGEIRVDDAKICPPKRAEMKHSMEALIHHFKLFSEGYLVPPGSTYTAIEAP 387
Query: 262 KGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
KGEFGVYLVSDGT+KPYRCKIKAPGF+HLAA++K+ +G +AD+VA+I
Sbjct: 388 KGEFGVYLVSDGTNKPYRCKIKAPGFSHLAAIDKMCRGFLIADVVAVI 435
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/67 (89%), Positives = 63/67 (94%)
Query: 309 IDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAK 368
+DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY SMMCNEQCY+LAVEKLLNIEVP RAK
Sbjct: 106 LDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYASMMCNEQCYALAVEKLLNIEVPPRAK 165
Query: 369 YIRVMFT 375
YIR +F
Sbjct: 166 YIRTLFA 172
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 16 KIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+II +D +++++ +NFGPQHPAAHGVL L E+
Sbjct: 59 EIIPPSDFFKGTHYEVQSVHLNFGPQHPAAHGVLRLIMEL 98
>gi|339319422|ref|YP_004679117.1| NADH:ubiquinone oxidoreductase subunit D [Candidatus Midichloria
mitochondrii IricVA]
gi|338225547|gb|AEI88431.1| NADH:ubiquinone oxidoreductase subunit D [Candidatus Midichloria
mitochondrii IricVA]
Length = 391
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 165/282 (58%), Positives = 209/282 (74%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EITRILNH + + T ALDVGAMTP WLFEEREK+MEFYERASGAR+HAAY+RP
Sbjct: 98 IRVLFCEITRILNHSLNITTQALDVGAMTPLLWLFEEREKLMEFYERASGARLHAAYIRP 157
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LL+DI+ FI +F +D+ E +LT+NR++ QR D+G+V+ E AL+YGFS
Sbjct: 158 GGVTQDLPTDLLEDIHKFIQSFPKMIDDTEGLLTDNRIFKQRLVDIGVVTKEQALDYGFS 217
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
G MLRGSGI WDLRK QPY+ Y+ +F +PIG +G+ ++ ++EMR+SL+I+EQ I
Sbjct: 218 GPMLRGSGIAWDLRKAQPYEIYDQLDFRVPIGKNGDCYDRYLVRIEEMRESLKIIEQCIE 277
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
KMP G ++T D KI+ P R+E K GY +P G TYTAVEAPKGEFGV
Sbjct: 278 KMPAGPIKTLDRKIAPPPRAETKTSMEALIHHFKLYTEGYDIPKGETYTAVEAPKGEFGV 337
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDG++KPYRC I+APGFAHL LE + KG LAD+VA I
Sbjct: 338 YLVSDGSNKPYRCHIRAPGFAHLQGLEFMSKGHMLADVVANI 379
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E C++LAVEKLL E
Sbjct: 31 GEVIERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMSQEHCFALAVEKLLGCE 90
Query: 363 VPLRAKYIRVMFT 375
VP RAKYIRV+F
Sbjct: 91 VPERAKYIRVLFC 103
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +N+ IN GPQHPAAHGVL L E+
Sbjct: 4 ETKNISINLGPQHPAAHGVLRLILEM 29
>gi|110816059|ref|YP_684391.1| NADH dehydrogenase subunit 7 [Oltmannsiellopsis viridis]
gi|86450270|gb|ABC96349.1| NADH dehydrogenase subunit 7 (mitochondrion) [Oltmannsiellopsis
viridis]
Length = 398
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 161/285 (56%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++A+ HALDVGA+TPF W FEEREK++EFYERASGARMHAAY
Sbjct: 102 AQYIRVLFSEITRILNHLLALSCHALDVGALTPFLWAFEEREKLLEFYERASGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GL DDI+ F F++RLDE+E+MLT NR+W QR D+G V+A++AL++
Sbjct: 162 FRPGGVAQDLPAGLCDDIHQFAKQFASRLDEIEEMLTNNRIWKQRLVDIGTVTAKEALDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGV++RGSGI WDLR QPY+ Y+ +F +P+G G+ +I ++EMRQSL+I+ Q
Sbjct: 222 GFSGVLVRGSGIPWDLRTAQPYEVYDRMKFSVPVGIRGDCYDRYLIRVEEMRQSLQIIMQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A+N+MP G V+ DD K++ PSRS++K G+ VP TY AVEAPKGE
Sbjct: 282 ALNQMPNGCVKVDDKKLTPPSRSQLKQSMESLIHHFKLYTEGFNVPASETYAAVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT+KPYRCKI+AP + L L+ + + LAD+V II
Sbjct: 342 FGVFLVSNGTNKPYRCKIRAPDYNSLQGLDFMARKHLLADVVTII 386
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRG EKLIEYKT+ QALPYFDRLDYVSMM E Y LA+EKL++ E
Sbjct: 38 GEVIERADPHIGLLHRGCEKLIEYKTFVQALPYFDRLDYVSMMAQEHSYCLAIEKLVDCE 97
Query: 363 VPLRAKYIRVMFT 375
+PLRA+YIRV+F+
Sbjct: 98 LPLRAQYIRVLFS 110
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
KQ++N +N GPQHP+AHGVL L E+
Sbjct: 10 KQVKNFTLNLGPQHPSAHGVLRLVLELN 37
>gi|353238184|emb|CCA70138.1| probable NADH dehydrogenase (ubiquinone) 49K chain [Piriformospora
indica DSM 11827]
Length = 463
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/285 (58%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 167 AQWIRTLFGEITRILNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 226
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GLLDDI+ + + FS R+DE+E+++T NR+W RT VG V+A+ AL+Y
Sbjct: 227 VRPGGVAFDLPHGLLDDIFKWATQFSTRVDEIEEVITGNRIWKGRTIGVGPVTAKQALDY 286
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+GVMLRGSG+ WD+RK PYD Y EFDIP+G++G+ + ++EMR+SLRI+ Q
Sbjct: 287 GFTGVMLRGSGVPWDIRKAMPYDKYAEVEFDIPVGSNGDCYDRYLCRVQEMRESLRIIGQ 346
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD KIS P R+ MK GY VPPG TY+A+EAPKGE
Sbjct: 347 CLNKMPPGVIKVDDHKISPPPRAMMKESMESLIHHFKLFSEGYHVPPGETYSAIEAPKGE 406
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVY+VSDG+++PYR +I+APGFAHLA + + + F+AD V II
Sbjct: 407 MGVYVVSDGSNRPYRVRIRAPGFAHLAGADFMMRHHFVADAVTII 451
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL EYKTY QALPYFDRLDYVSMM NEQCYSLAVEKLLNIEVP RA++
Sbjct: 110 DPHIGLLHRGTEKLCEYKTYIQALPYFDRLDYVSMMTNEQCYSLAVEKLLNIEVPERAQW 169
Query: 370 IRVMF 374
IR +F
Sbjct: 170 IRTLF 174
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEIT 56
+R+ INFGPQHPAAHGVL L E+
Sbjct: 76 SMRHFTINFGPQHPAAHGVLRLILELN 102
>gi|336377083|gb|EGO05418.1| Ndufs2, NADH:ubiquinone oxidoreductase 49 kd subunit [Serpula
lacrymans var. lacrymans S7.3]
gi|336390122|gb|EGO31265.1| NdufS2, NADH ubiquinone oxidoreductase 49 kd subunit [Serpula
lacrymans var. lacrymans S7.9]
Length = 465
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 162/279 (58%), Positives = 210/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+L+H+MAV +HA+DVGA+TPF W FEEREK+MEFYER SGAR+H+AYVRPGGV
Sbjct: 175 LFGEITRVLSHLMAVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGV 234
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DI+ + + FS+R+DE+E+++T NR+W QRT +G V+A+ AL+Y F+GVM
Sbjct: 235 AFDLPHGLLEDIFKWATQFSSRVDEIEEVVTGNRIWKQRTVGIGKVTAKQALDYSFTGVM 294
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WDLRK QPYD Y+ EFD+P+G +G+ + ++E R+SLRI+ Q +NKMP
Sbjct: 295 LRGSGIPWDLRKTQPYDKYDEVEFDVPVGKNGDCYDRYLCRVQEFRESLRIIHQCLNKMP 354
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ DD KI P R+ MK GY VPPG TY+A+EAPKGE VYLV
Sbjct: 355 LGAVKIDDNKIVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMAVYLV 414
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PYRC I+APGFAHLA + + + LAD VA+I
Sbjct: 415 SDGTNRPYRCSIRAPGFAHLAGADFMMRRHMLADAVAVI 453
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE C++LAVEKLLNIE P RAK+
Sbjct: 112 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCFTLAVEKLLNIEAPERAKW 171
Query: 370 IRVMF 374
IR +F
Sbjct: 172 IRTLF 176
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ ++R+ +NFGPQHPAAHGVL + E+
Sbjct: 75 ADAKMRHFTVNFGPQHPAAHGVLRMILELN 104
>gi|371907968|emb|CAP18137.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
sp. 735]
Length = 343
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/297 (57%), Positives = 214/297 (72%), Gaps = 34/297 (11%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWL 81
+NL+ + IR++ I ++FAEITRILNH++AVG HA+DVGA+TPF W
Sbjct: 61 ENLLSCKVPIRSIYIR------------VIFAEITRILNHLLAVGCHAIDVGAITPFLWA 108
Query: 82 FEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLT 141
FEEREK++EFYER SGAR+HAAY RPGGVA+D+P+GL+DDIY F+ FS RLDE+E++LT
Sbjct: 109 FEEREKLIEFYERVSGARIHAAYFRPGGVAVDLPLGLIDDIYVFVLQFSTRLDEIEEILT 168
Query: 142 ENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTH 201
NR+W QR D+GIVSA DA GFSGV+LRGSGI WDLR QPYD Y + +FDIP+GT
Sbjct: 169 SNRIWKQRLVDIGIVSASDACALGFSGVILRGSGINWDLRASQPYDVYSSLKFDIPVGTK 228
Query: 202 GN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK----------- 245
G+ +I ++E+RQSL I+ Q +NK+P G VR D IS PSR+ +K
Sbjct: 229 GDCYDRYLIRVEEIRQSLSIIHQCLNKIPTGPVR--DENISPPSRTNLKSSIESLIHHFK 286
Query: 246 ----GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGK 298
G VP G TYTA EAPKGEFGVYL+S+GT++PYRCKIK+PGF HL AL+ I K
Sbjct: 287 HYTEGLVVPSGETYTATEAPKGEFGVYLISNGTNRPYRCKIKSPGFNHLQALDHICK 343
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL+ +
Sbjct: 8 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLSCK 67
Query: 363 VPLRAKYIRVMF 374
VP+R+ YIRV+F
Sbjct: 68 VPIRSIYIRVIF 79
>gi|241957339|ref|XP_002421389.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor,
putative; respiratory chain complex I subunit, putative
[Candida dubliniensis CD36]
gi|223644733|emb|CAX40724.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor,
putative [Candida dubliniensis CD36]
Length = 479
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 204/279 (73%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH M+V TH +DVG +TPF W FEEREK+MEFYER SGAR+H AY RPGGV
Sbjct: 189 LFGEITRVLNHCMSVLTHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHTAYFRPGGV 248
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F R+DEVE++ T+NR+W RT VG+VSAEDALNY SGVM
Sbjct: 249 SQDLPAGLLDDIYMWATQFGDRIDEVEELCTDNRIWKDRTIGVGVVSAEDALNYSLSGVM 308
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ +FDI +G +G+ +I M E RQSLRI+ Q IN +P
Sbjct: 309 LRGSGIPFDIRKSQPYDAYDLVDFDIAVGINGDCYDRYLIRMAEFRQSLRIIFQCINDIP 368
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P RS M KGY VP G TYTA+EAPKGE GVY+V
Sbjct: 369 EGPVKVEDYKISPPPRSLMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMGVYVV 428
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G+ LAD VAII
Sbjct: 429 SDGSERPYRCKIRAPGFAHLGAFDHIARGNLLADAVAII 467
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NE ++LAVEKLLN+EVPLRAKY
Sbjct: 126 DPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNELVFALAVEKLLNVEVPLRAKY 185
Query: 370 IRVMF 374
IR +F
Sbjct: 186 IRTLF 190
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 29/43 (67%), Gaps = 5/43 (11%)
Query: 18 INWNDNLVP--VEKQ---IRNMVINFGPQHPAAHGVLLLFAEI 55
I W+ N P +EKQ IR+ INFGPQHPAAHGVL L E+
Sbjct: 75 ITWDKNDDPDRLEKQNTKIRHFTINFGPQHPAAHGVLRLILEL 117
>gi|170113910|ref|XP_001888153.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164636820|gb|EDR01111.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 459
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 166/285 (58%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH+MA+ TH +DVG +TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 167 AQWIRVLFGEITRILNHLMAILTHVMDVGGLTPFLWGFEEREKLMEFYERVSGARLHAAY 226
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GLLDDI+ + + FS+R+DE+E+++T NR+W +RT +G V+A+ AL+Y
Sbjct: 227 VRPGGVAFDLPHGLLDDIFKWGTQFSSRVDEIEEVVTGNRIWKERTIGIGPVTAKQALDY 286
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVMLRGSGI WDLRKV PYD Y+ EFDIP+G +G+ + ++EMR+SLRI+ Q
Sbjct: 287 SFSGVMLRGSGIAWDLRKVAPYDKYDEVEFDIPVGKNGDCYDRYLCRVQEMRESLRIISQ 346
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A+NK+ G V+ DD K+ P R+ MK GY VPPG TY+A+EAPKGE
Sbjct: 347 ALNKITPGAVKVDDHKLVPPPRAMMKESMESLIHHFKIFSEGYSVPPGETYSAIEAPKGE 406
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDG+++PYRC I+APGFAHLA + + + LAD VAII
Sbjct: 407 MGVYLVSDGSNRPYRCSIRAPGFAHLAGSDFMMRQHMLADAVAII 451
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RA++
Sbjct: 110 DPHIGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPARAQW 169
Query: 370 IRVMF 374
IRV+F
Sbjct: 170 IRVLF 174
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ ++R+ +NFGPQHPAAHGVL + E+
Sbjct: 74 DAKMRHFTVNFGPQHPAAHGVLRMILELN 102
>gi|269968979|gb|ACZ54719.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968981|gb|ACZ54720.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968983|gb|ACZ54721.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968985|gb|ACZ54722.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968987|gb|ACZ54723.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968989|gb|ACZ54724.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968991|gb|ACZ54725.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968993|gb|ACZ54726.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968995|gb|ACZ54727.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968997|gb|ACZ54728.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269968999|gb|ACZ54729.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969001|gb|ACZ54730.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969003|gb|ACZ54731.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969005|gb|ACZ54732.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969007|gb|ACZ54733.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969009|gb|ACZ54734.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969011|gb|ACZ54735.1| CG1970-PA-like protein [Nasonia vitripennis]
gi|269969013|gb|ACZ54736.1| CG1970-PA-like protein [Nasonia vitripennis]
Length = 259
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 160/257 (62%), Positives = 203/257 (78%), Gaps = 20/257 (7%)
Query: 73 GAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSAR 132
GA++PFFW+FEEREK+ EF+ERASGARMHA YVRPGGVA+D+P+GLLDDI+ F++ FS R
Sbjct: 1 GALSPFFWVFEEREKIYEFHERASGARMHACYVRPGGVAVDLPLGLLDDIHDFVAKFSER 60
Query: 133 LDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENF 192
+DEVED+LTENR+W QRT +G++SAE+ALNYG SG+M+R GIKWDLRK PYD Y+
Sbjct: 61 MDEVEDLLTENRIWKQRTVGIGVLSAEEALNYGCSGMMIRACGIKWDLRKSMPYDAYDCV 120
Query: 193 EFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK-- 245
+FD+P+ +G+ ++ M EMRQSLRI+EQ +N+MP GEVR DD KIS P R+EMK
Sbjct: 121 DFDVPVAWNGDTYDRYLVRMHEMRQSLRIIEQCLNQMPAGEVRVDDFKISPPPRAEMKLS 180
Query: 246 -------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAA 292
GY VPPGATYTAVEAPKGEFGVYLVSDG+S+PYR +++APGF HLA
Sbjct: 181 MEALIHHFKLFSEGYHVPPGATYTAVEAPKGEFGVYLVSDGSSRPYRLRVRAPGFPHLAL 240
Query: 293 LEKIGKGSFLADIVAII 309
L+K+ G LAD+V+++
Sbjct: 241 LKKLAPGLMLADVVSVL 257
>gi|344299591|gb|EGW29944.1| hypothetical protein SPAPADRAFT_63571 [Spathaspora passalidarum
NRRL Y-27907]
Length = 478
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 205/279 (73%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH+M++ TH +DVG +TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 188 LFGEITRVLNHLMSILTHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
+ D+P GLLDDIY + + F R+DEVE++ T+NR+W RT D+G +SAEDALNY SGVM
Sbjct: 248 SQDLPAGLLDDIYMWATQFGDRIDEVEELCTDNRIWKDRTVDIGTLSAEDALNYSCSGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LR SGI +D+RK QPYD Y+ +FDI +G +G+ +I M E RQSLRI+ Q IN +P
Sbjct: 308 LRASGIPFDIRKSQPYDAYDLVDFDIAVGLNGDCYDRYLIRMAEFRQSLRIIFQCINDIP 367
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P+RS M KG+ VP G TYTA+EAPKGE VY+V
Sbjct: 368 EGPVKVEDYKISPPARSAMKEDMEALIHHFLVFTKGFAVPQGETYTAIEAPKGEMAVYVV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT +PYRCKI+APGFAHL A + + +G LAD VAII
Sbjct: 428 SDGTERPYRCKIRAPGFAHLGAFDHMARGHLLADAVAII 466
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NEQ ++LAVEKLLN+EVP+RAKY
Sbjct: 125 DPHVGLLHRGTEKLIESKTYMQALPYFDRLDYVSMMTNEQVFALAVEKLLNVEVPIRAKY 184
Query: 370 IRVMF 374
IR +F
Sbjct: 185 IRTLF 189
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 23 NLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
N+ +IR+ INFGPQHPAAHGVL L E+
Sbjct: 84 NVAKQNTKIRHFTINFGPQHPAAHGVLRLILEL 116
>gi|448536640|ref|XP_003871159.1| Nuc2 NADH-ubiquinone oxidoreductase [Candida orthopsilosis Co
90-125]
gi|380355515|emb|CCG25034.1| Nuc2 NADH-ubiquinone oxidoreductase [Candida orthopsilosis]
Length = 483
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 205/279 (73%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH M+V TH +DVG +TPF W FEEREK+MEFYER SGAR+H+AYVRPGGV
Sbjct: 193 LFGEITRVLNHCMSVLTHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGV 252
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDIY + + F R+DE+E++ T+NR+W +RT +VG V+A+DALNY SGVM
Sbjct: 253 AQDLPAGLLDDIYMWATQFGDRIDEIEELCTDNRIWKERTINVGTVTADDALNYSCSGVM 312
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ +FDI +G +G+ +I M E RQSLRI+ Q IN MP
Sbjct: 313 LRGSGIPFDVRKSQPYDAYDLVDFDIAVGLNGDCYDRYLIRMAEFRQSLRIIFQCINDMP 372
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D +S P RS M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 373 QGPVKVEDYNVSPPPRSLMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVV 432
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G+ LAD VAII
Sbjct: 433 SDGSERPYRCKIRAPGFAHLGAFDHIARGNLLADAVAII 471
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NEQ ++LAVEKLLN+EVPLRAKY
Sbjct: 130 DPHVGLLHRGTEKLIETKTYMQALPYFDRLDYVSMMTNEQVFALAVEKLLNVEVPLRAKY 189
Query: 370 IRVMF 374
IR +F
Sbjct: 190 IRTLF 194
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 9 DKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ W + D + +IR+ INFGPQHPAAHGVL L E+
Sbjct: 75 DETNMMWDKSDDPDQVSKQNTKIRHFTINFGPQHPAAHGVLRLILEL 121
>gi|393911886|gb|EFO27120.2| NADH dehydrogenase iron-sulfur protein 2 [Loa loa]
Length = 423
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 209/287 (72%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L E+TRI NH+M V THALD+GAMTP FW+FEEREKM EF ER GARMH+
Sbjct: 125 PRAKFIRTLMNELTRIQNHLMGVTTHALDIGAMTPLFWMFEEREKMFEFTERVCGARMHS 184
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+P+G +DD+Y + F RLD +ED+LT NR+++ RT D+G+V AEDAL
Sbjct: 185 NYVRPGGVAWDLPLGWMDDVYDWALRFPQRLDMMEDLLTGNRIFMARTVDIGLVKAEDAL 244
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
+GFSGVMLRGSGIKWD+RK QPYD Y+ +FD+P+G G+ +I M+EMR+S++I+
Sbjct: 245 LWGFSGVMLRGSGIKWDIRKSQPYDAYDQVDFDVPVGVKGDCYDRYLIRMEEMRESVKII 304
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+ +NKMP GE++ DD K+ P R+EMK GY VPPGATY VEAPK
Sbjct: 305 FECLNKMPPGEIKVDDHKVVPPKRAEMKQNMESLIHHFKYYTEGYQVPPGATYVPVEAPK 364
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVS G S+PYRC ++PGF HLAA++ I S L+D+VA+I
Sbjct: 365 GEFGVYLVSQGESRPYRCFARSPGFPHLAAIDDICYMSLLSDVVAVI 411
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 61/72 (84%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
+IV PHIGLLHRGTEKLIEYKTYTQA+PYFDR+DYVSMMCNE ++LAVEKLL +++
Sbjct: 64 EIVMKATPHIGLLHRGTEKLIEYKTYTQAVPYFDRMDYVSMMCNETAFALAVEKLLGVDI 123
Query: 364 PLRAKYIRVMFT 375
P RAK+IR +
Sbjct: 124 PPRAKFIRTLMN 135
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + ++NFGPQHPAAHGVL L E+
Sbjct: 34 EKPLHYYLLNFGPQHPAAHGVLRLVLEL 61
>gi|312067890|ref|XP_003136956.1| hypothetical protein LOAG_01369 [Loa loa]
Length = 476
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 209/287 (72%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L E+TRI NH+M V THALD+GAMTP FW+FEEREKM EF ER GARMH+
Sbjct: 178 PRAKFIRTLMNELTRIQNHLMGVTTHALDIGAMTPLFWMFEEREKMFEFTERVCGARMHS 237
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
YVRPGGVA D+P+G +DD+Y + F RLD +ED+LT NR+++ RT D+G+V AEDAL
Sbjct: 238 NYVRPGGVAWDLPLGWMDDVYDWALRFPQRLDMMEDLLTGNRIFMARTVDIGLVKAEDAL 297
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
+GFSGVMLRGSGIKWD+RK QPYD Y+ +FD+P+G G+ +I M+EMR+S++I+
Sbjct: 298 LWGFSGVMLRGSGIKWDIRKSQPYDAYDQVDFDVPVGVKGDCYDRYLIRMEEMRESVKII 357
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+ +NKMP GE++ DD K+ P R+EMK GY VPPGATY VEAPK
Sbjct: 358 FECLNKMPPGEIKVDDHKVVPPKRAEMKQNMESLIHHFKYYTEGYQVPPGATYVPVEAPK 417
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVS G S+PYRC ++PGF HLAA++ I S L+D+VA+I
Sbjct: 418 GEFGVYLVSQGESRPYRCFARSPGFPHLAAIDDICYMSLLSDVVAVI 464
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 61/72 (84%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
+IV PHIGLLHRGTEKLIEYKTYTQA+PYFDR+DYVSMMCNE ++LAVEKLL +++
Sbjct: 117 EIVMKATPHIGLLHRGTEKLIEYKTYTQAVPYFDRMDYVSMMCNETAFALAVEKLLGVDI 176
Query: 364 PLRAKYIRVMFT 375
P RAK+IR +
Sbjct: 177 PPRAKFIRTLMN 188
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + ++NFGPQHPAAHGVL L E+
Sbjct: 87 EKPLHYYLLNFGPQHPAAHGVLRLVLEL 114
>gi|296040741|gb|ADG85338.1| NADH dehydrogenase subunit 7 [Silene noctiflora]
Length = 394
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 158/285 (55%), Positives = 210/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRLLNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F FS+R+DE+E+MLT NR+W R D+G V+AE A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFSSRIDELEEMLTANRIWKDRLVDIGTVTAEQAKSW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y +FD+P+GT G+ I ++EMRQSLR++ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRRAAPYDVYHQLDFDVPVGTRGDCYDRYCIRIEEMRQSLRLIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N++P G +++DD K+ PSRS MK G+ VP + YT VEAPKGE
Sbjct: 278 CLNELPLGLIKSDDRKLCPPSRSRMKLSMESLIHHFELYTEGFSVPSSSVYTGVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLAVE LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVESLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++K+I+ +NFGPQHPAAHGVL L E+
Sbjct: 4 MKKEIKTFTLNFGPQHPAAHGVLRLVLEMN 33
>gi|409083972|gb|EKM84329.1| NdufS2,NADH ubiquinone oxidoreductase 49 kd subunit [Agaricus
bisporus var. burnettii JB137-S8]
Length = 456
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 209/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH+MA+ TH +DVG +TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 160 AQWIRTLFGEITRILNHLMALLTHVMDVGGLTPFLWGFEEREKLMEFYERVSGARLHAAY 219
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GLLDDI+ + + F +R+DE+E+++T NR+W +RT VGIV+A+ AL+Y
Sbjct: 220 VRPGGVAFDLPHGLLDDIFKWATQFGSRVDEIEEVVTGNRIWKERTIGVGIVTAKQALDY 279
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVMLRGSG+ WDLRKV PYD Y EFD+P+G +G+ + ++EMR+S+RI+ Q
Sbjct: 280 SFSGVMLRGSGVAWDLRKVAPYDKYAEVEFDVPVGQNGDCYDRYLCRVQEMRESIRIISQ 339
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NK+ G V+ DD K+ P R+ MK GY VPPG TY A+EAPKGE
Sbjct: 340 CLNKISPGAVKVDDHKLVPPPRAAMKESMEALIHHFKIFSEGYSVPPGETYCAIEAPKGE 399
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VYLVSDGT++PYRC I+APGFAHLA + + + LAD+VAII
Sbjct: 400 MAVYLVSDGTNRPYRCSIRAPGFAHLAGSDFMMRSHMLADVVAII 444
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RA++
Sbjct: 103 DPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAQW 162
Query: 370 IRVMF 374
IR +F
Sbjct: 163 IRTLF 167
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ ++R+ +NFGPQHPAAHGVL + E++
Sbjct: 67 DAKMRHFTVNFGPQHPAAHGVLRMILELS 95
>gi|371907990|emb|CAP18813.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Tribonema
vulgare]
Length = 373
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 165/282 (58%), Positives = 213/282 (75%), Gaps = 22/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 91 IRVIFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARIHAAYFRP 150
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+P+GLLDDI+ FI+ FS RLDE+E++LT NR+W QR D+G+V+A DA N+GFS
Sbjct: 151 GGVSIDLPLGLLDDIFVFINQFSTRLDEIEEILTLNRIWKQRLVDIGVVTAHDAKNFGFS 210
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSG+ WDLR QPYD Y +F +P+GT G+ ++ ++EMRQSL IV Q +N
Sbjct: 211 GVILRGSGLNWDLRISQPYDIYPLVKFKVPVGTKGDCYDRYLLRLEEMRQSLSIVLQCLN 270
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
++P G +R ++ IS PSR+ +K GY V G TYTA EAPKGEFGV
Sbjct: 271 QIPIGSIRNEN--ISPPSRTILKFSMEGLIHHFKLYTEGYTVLSGETYTATEAPKGEFGV 328
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVS+ T++PYRCKIKAPGF HL AL I +G +AD+V II
Sbjct: 329 YLVSNNTNRPYRCKIKAPGFNHLQALNFICQGHIIADVVTII 370
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVS++ E YSL VE LL +
Sbjct: 24 GEIVKHADPHIGLLHRGTEKLIESKTYLQALPYFDRLDYVSIISQEHTYSLGVEALLQAK 83
Query: 363 VPLRAKYIRVMF 374
VP+R+ YIRV+F
Sbjct: 84 VPIRSIYIRVIF 95
>gi|426200969|gb|EKV50892.1| hypothetical protein AGABI2DRAFT_189224, partial [Agaricus bisporus
var. bisporus H97]
Length = 456
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 209/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH+MA+ TH +DVG +TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 160 AQWIRTLFGEITRILNHLMALLTHVMDVGGLTPFLWGFEEREKLMEFYERVSGARLHAAY 219
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GLLDDI+ + + F +R+DE+E+++T NR+W +RT VGIV+A+ AL+Y
Sbjct: 220 VRPGGVAFDLPHGLLDDIFKWATQFGSRVDEIEEVVTGNRIWKERTIGVGIVTAKQALDY 279
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVMLRGSG+ WDLRKV PYD Y EFD+P+G +G+ + ++EMR+S+RI+ Q
Sbjct: 280 SFSGVMLRGSGVAWDLRKVAPYDKYAEVEFDVPVGQNGDCYDRYLCRVQEMRESIRIISQ 339
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NK+ G V+ DD K+ P R+ MK GY VPPG TY A+EAPKGE
Sbjct: 340 CLNKISPGAVKVDDHKLVPPPRAAMKESMEALIHHFKIFSEGYSVPPGETYCAIEAPKGE 399
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VYLVSDGT++PYRC I+APGFAHLA + + + LAD+VAII
Sbjct: 400 MAVYLVSDGTNRPYRCSIRAPGFAHLAGSDFMMRSHMLADVVAII 444
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RA++
Sbjct: 103 DPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAQW 162
Query: 370 IRVMF 374
IR +F
Sbjct: 163 IRTLF 167
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ ++R+ +NFGPQHPAAHGVL + E++
Sbjct: 67 DAKMRHFTVNFGPQHPAAHGVLRMILELS 95
>gi|392570895|gb|EIW64067.1| NADH-ubiquinone oxidoreductase [Trametes versicolor FP-101664 SS1]
Length = 480
Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 162/287 (56%), Positives = 214/287 (74%), Gaps = 28/287 (9%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF E+TR+LNH+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 182 LFGELTRVLNHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 241
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DI+ + + FS+R+DE+E+++T NR+W +RT +G+V+A++AL++ FSGVM
Sbjct: 242 AFDLPHGLLEDIFKWATQFSSRVDEIEEVVTGNRIWKERTIGIGVVTAKEALDWSFSGVM 301
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WD+RK PYD Y+ EFDIP+G +G+ + ++E R+SLRI+ Q +NK+P
Sbjct: 302 LRGSGIPWDIRKAAPYDKYDEVEFDIPVGKNGDCYDRYLCRVQEFRESLRIISQCLNKIP 361
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G ++ DD K+ P R+ MK GY VPPG TY+A+EAPKGE GVYLV
Sbjct: 362 TGAIKVDDYKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMGVYLV 421
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKI--------GKGSFLADIVAII 309
SDGT++PYRCKI+APGFAHLA + + + +AD+VAII
Sbjct: 422 SDGTNRPYRCKIRAPGFAHLAGADFMMRHVRCDHERAHMIADVVAII 468
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYSLAVEKLLNIEVP RAK+
Sbjct: 119 DPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSLAVEKLLNIEVPERAKW 178
Query: 370 IRVMF 374
IR +F
Sbjct: 179 IRTLF 183
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ Q+R+ +NFGPQHPAAHGVL L E+
Sbjct: 83 DAQLRHFTVNFGPQHPAAHGVLRLILELN 111
>gi|58617180|ref|YP_196379.1| NADH dehydrogenase subunit D [Ehrlichia ruminantium str. Gardel]
gi|75507498|sp|Q5FGV3.1|NUOD_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|58416792|emb|CAI27905.1| NADH-quinone oxidoreductase chain D [Ehrlichia ruminantium str.
Gardel]
Length = 393
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 160/280 (57%), Positives = 208/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++F E+TRILNH++ + + ALD+GAMTP W+FEEREK++ FYERASGAR H+AY+RPGG
Sbjct: 102 VIFCELTRILNHLLNISSQALDIGAMTPLLWMFEEREKILNFYERASGARFHSAYIRPGG 161
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA DIP L+ DI+ F++TF +D+V+ +LTENR+W QR D+G+VS + ALN+GFSG
Sbjct: 162 VAADIPEDLIHDIFQFVNTFPKFMDDVDSLLTENRIWKQRNVDIGVVSKKQALNWGFSGP 221
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR GI WDLRK QPY+ Y+ EF IPIG G+ ++ M E+R+S+ +VEQ +N++
Sbjct: 222 MLRACGIPWDLRKSQPYEIYDELEFKIPIGEKGDCYDRYLVRMAEIRESISLVEQCLNRI 281
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+TDD KI+ P RSEMK GY VP G TY AVEAPKGEFGVY+
Sbjct: 282 PDGPVKTDDRKIAPPKRSEMKKSMEALIHHFKLYSEGYIVPAGETYMAVEAPKGEFGVYI 341
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRC+I+APGFAHL A++ + KG LAD+ AII
Sbjct: 342 VSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAII 381
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 33 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMAQEHAYSLCVEKLLKCE 92
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 93 VPIRAKYLRVIFC 105
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 6 KITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHI 43
>gi|354548591|emb|CCE45328.1| hypothetical protein CPAR2_703410 [Candida parapsilosis]
Length = 485
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 205/279 (73%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+LNH M+V TH +DVG +TPF W FEEREK+MEFYER SGAR+H+AYVRPGGV
Sbjct: 195 LFGEITRVLNHCMSVLTHIMDVGGLTPFLWGFEEREKLMEFYERVSGARLHSAYVRPGGV 254
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLLDDIY + + F R+DE+E++ T+NR+W +RT +VG V+A+DALNY SGVM
Sbjct: 255 AQDLPSGLLDDIYMWATQFGDRIDEIEELCTDNRIWKERTINVGTVTADDALNYSCSGVM 314
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ +FDI +G +G+ +I M E RQSLRI+ Q IN MP
Sbjct: 315 LRGSGIPFDVRKSQPYDAYDLVDFDIAVGLNGDCYDRYLIRMAEFRQSLRIIFQCINDMP 374
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D +S P RS M KGY VP G TYTA+EAPKGE VY+V
Sbjct: 375 QGPVKVEDYNVSPPPRSLMKEDMEALIHHFLLFTKGYAVPQGETYTAIEAPKGEMAVYVV 434
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYRCKI+APGFAHL A + I +G+ LAD VAII
Sbjct: 435 SDGSERPYRCKIRAPGFAHLGAFDHIARGNLLADAVAII 473
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVSMM NEQ ++LAVEKLLNIEVPLRAKY
Sbjct: 132 DPHVGLLHRGTEKLIETKTYMQALPYFDRLDYVSMMTNEQVFALAVEKLLNIEVPLRAKY 191
Query: 370 IRVMF 374
IR +F
Sbjct: 192 IRTLF 196
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 9 DKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ W + D + +IR+ INFGPQHPAAHGVL L E+
Sbjct: 77 DETNMMWDKSDDPDQVSKQNTKIRHFTINFGPQHPAAHGVLRLILEL 123
>gi|251747920|gb|ABM06161.2| NADH dehydrogenase subunit 7 [Haplomitrium mnioides]
Length = 393
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 160/286 (55%), Positives = 210/286 (73%), Gaps = 20/286 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +LF EITRILNH++A+ THA+DVGA TPF W FEEREK++EFYER GARMHA
Sbjct: 95 PRAQYIRVLFREITRILNHLLALTTHAMDVGAPTPFLWAFEEREKLLEFYERVPGARMHA 154
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
+Y+RPGGVA D+P+GL +DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A+
Sbjct: 155 SYIRPGGVAQDLPLGLSEDISPFTQQFASRIDELEEMLTNNRIWKQRLVDIGTVTAQQAV 214
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GFSGVM RGSG+ WDLRK PYD Y+ +FD+P+GT G+ I ++EMRQS+RI+
Sbjct: 215 DWGFSGVMSRGSGVCWDLRKSAPYDVYDRLDFDVPVGTRGDCYDRYCIRIEEMRQSIRII 274
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +N+MP G ++ DD K PSRS+MK G VP +T+TAVEAPK
Sbjct: 275 MQCLNQMPSGVIKADDRKPRPPSRSQMKQSTESLIHHLKPHTEGVSVPAPSTHTAVEAPK 334
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAI 308
GEFGV+LVS+GT++PYRCK +APGFAHL L+ + K LAD+V I
Sbjct: 335 GEFGVFLVSNGTNRPYRCKARAPGFAHLQGLDSMSKHHMLADVVTI 380
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDR DYVSMM E Y AVE+L N E
Sbjct: 33 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRSDYVSMMAQEHAYPSAVERLCNCE 92
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 93 VPPRAQYIRVLF 104
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
KQI+N N GPQHPAAHGV L E+
Sbjct: 5 KQIKNFTPNSGPQHPAAHGVSRLVLEMN 32
>gi|170588619|ref|XP_001899071.1| Probable NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrialprecursor [Brugia malayi]
gi|158593284|gb|EDP31879.1| Probable NADH-ubiquinone oxidoreductase 49 kDa subunit,
mitochondrialprecursor , putative [Brugia malayi]
Length = 478
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 160/287 (55%), Positives = 205/287 (71%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LFAE+ R+ NH ++ THALD+GAMTP FW+FEEREK+ EF ER SGARMH
Sbjct: 180 PRAKWIRTLFAELNRLANHAFSIVTHALDIGAMTPLFWMFEEREKLFEFNERVSGARMHV 239
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
Y+RPGGVA D+P+GLLDDIY + F R+D +EDMLTENRLW RT+D+G++SA DA
Sbjct: 240 NYIRPGGVAWDLPLGLLDDIYDWTIQFPQRIDAMEDMLTENRLWQSRTRDIGLISATDAQ 299
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
+ GFSGVMLR SG+K+D+RK QPY+ Y+ EFD+P+GT G+ + ++EMRQSLRIV
Sbjct: 300 SLGFSGVMLRASGVKYDVRKAQPYEVYDQIEFDVPVGTRGDCYDRYLCRLEEMRQSLRIV 359
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+NKMP GE++ DD K+ P R EMK GY VPPG+ Y +EAP
Sbjct: 360 LDCLNKMPPGEIKVDDHKVVPPKREEMKNSMESLIHHFKFFSEGYQVPPGSCYVPIEAPN 419
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GE+G Y+V+DGTSKPYRC I+ PGFAHLA L + S ++D+VA+I
Sbjct: 420 GEYGTYVVADGTSKPYRCFIRGPGFAHLAGLHDLTHMSLISDVVAVI 466
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 58/65 (89%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHR TEKLIEYKTYTQALPYFDRLDY++M+ NEQ ++LAVEKLL IE+P RAK+I
Sbjct: 126 PHIGLLHRATEKLIEYKTYTQALPYFDRLDYITMLTNEQGFALAVEKLLGIEIPPRAKWI 185
Query: 371 RVMFT 375
R +F
Sbjct: 186 RTLFA 190
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + ++NFGPQHPAAHGVL L E+
Sbjct: 89 EKPLHYYLLNFGPQHPAAHGVLRLILEL 116
>gi|388880500|dbj|BAM16490.1| NADH dehydrogenase subunit 7 (mitochondrion) [Leucocryptos marina]
Length = 395
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 161/282 (57%), Positives = 209/282 (74%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EITRILNH++AV HALDVGA+TP W FEEREK+MEFYER SGARMHA+Y+RP
Sbjct: 102 IRVLFSEITRILNHLLAVSCHALDVGALTPLLWAFEEREKLMEFYERVSGARMHASYIRP 161
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+PIGLLDDIY F+ FSAR+DE+E++LT NR+W QR D+G V E A+++GF+
Sbjct: 162 GGVSLDLPIGLLDDIYSFVLQFSARIDEIEELLTHNRIWKQRLVDIGTVPLEVAMDWGFT 221
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGI WDLRK +PY+ Y+ F +P+GT G+ +I ++EMR+SL I+ Q +N
Sbjct: 222 GVMLRGSGIDWDLRKDRPYEVYDKLSFKVPVGTAGDCYDRYLIRVQEMRESLGIILQCLN 281
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
MP G +++ D K PSR MK G+ + G Y AVEAPKGEFGV
Sbjct: 282 DMPEGPIKSTDSKYVAPSRFSMKNDMESLIHHFKFYTEGFNITSGQVYQAVEAPKGEFGV 341
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+LVSDG+++PYRCKI+APGFAHL L+ + +G LAD+V II
Sbjct: 342 FLVSDGSARPYRCKIRAPGFAHLQGLDVMAQGHMLADVVTII 383
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ + DPHIGLLHRGTEKLIE K Y Q LPYFDRLDYVSMM E YSLA+E L+ +E
Sbjct: 35 GETITYADPHIGLLHRGTEKLIESKNYLQGLPYFDRLDYVSMMVQEHGYSLAIESLIGLE 94
Query: 363 VPLRAKYIRVMFT 375
+P RA YIRV+F+
Sbjct: 95 IPERASYIRVLFS 107
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+++N INFGPQHPAAHGVL L E+
Sbjct: 8 KLKNFTINFGPQHPAAHGVLRLVLEL 33
>gi|269969015|gb|ACZ54737.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969017|gb|ACZ54738.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969019|gb|ACZ54739.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969021|gb|ACZ54740.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969023|gb|ACZ54741.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969025|gb|ACZ54742.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969027|gb|ACZ54743.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969029|gb|ACZ54744.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969031|gb|ACZ54745.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969033|gb|ACZ54746.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969035|gb|ACZ54747.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969037|gb|ACZ54748.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969039|gb|ACZ54749.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969041|gb|ACZ54750.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969043|gb|ACZ54751.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969045|gb|ACZ54752.1| CG1970-PA-like protein [Nasonia longicornis]
gi|269969047|gb|ACZ54753.1| CG1970-PA-like protein [Nasonia longicornis]
Length = 259
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 159/257 (61%), Positives = 202/257 (78%), Gaps = 20/257 (7%)
Query: 73 GAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSAR 132
GA++PFFW+FEEREK+ EF+ERASGARMHA YVRPGGVA+D+P+GLLDDI+ F+ FS R
Sbjct: 1 GALSPFFWVFEEREKIYEFHERASGARMHACYVRPGGVAVDLPLGLLDDIHDFVGKFSER 60
Query: 133 LDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENF 192
+DEVED+LTENR+W QRT +G++SAE+ALNYG SG+M+R GIKWDLRK PYD Y+
Sbjct: 61 MDEVEDLLTENRIWKQRTVGIGVLSAEEALNYGCSGMMIRACGIKWDLRKSMPYDAYDCV 120
Query: 193 EFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK-- 245
+FD+P+ +G+ ++ M EMRQSLRI+EQ +N+MP GEVR DD+KIS P R+EMK
Sbjct: 121 DFDVPVAWNGDTYDRYLVRMHEMRQSLRIIEQCLNQMPAGEVRVDDLKISPPPRAEMKLS 180
Query: 246 -------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAA 292
GY VPPGATYTAVEAPKGEFGVYLVSDG+S+PYR +++AP F HLA
Sbjct: 181 MEALIHHFKLFSEGYHVPPGATYTAVEAPKGEFGVYLVSDGSSRPYRVRVRAPSFPHLAL 240
Query: 293 LEKIGKGSFLADIVAII 309
L+K+ G LAD+V+++
Sbjct: 241 LKKLAPGLMLADVVSVL 257
>gi|10802908|gb|AAG23656.1|AF288091_1 NADH dehydrogenase subunit 7 [Thraustochytrium aureum]
Length = 397
Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 163/282 (57%), Positives = 210/282 (74%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++F EITRILNH++AV HALDVGA+TPFFW FEEREK++EFYER SGARMHAAYVRP
Sbjct: 104 IRVIFLEITRILNHLLAVSCHALDVGAITPFFWGFEEREKLIEFYERVSGARMHAAYVRP 163
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+ DIP GLL+DI++F +F RLDE E++LT NR+W QR ++G+VSA D+ N+GFS
Sbjct: 164 GGVSFDIPKGLLNDIFYFCESFKVRLDEFEELLTNNRIWKQRLVNIGVVSAADSKNWGFS 223
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGI WDLR+ PY+ Y F+IP+G++G+ +I ++E+RQS+ I+ QAIN
Sbjct: 224 GVMLRGSGIPWDLRQNFPYEVYNQLSFEIPVGSNGDCYDRYLIRIEEIRQSISIIVQAIN 283
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
MP G V++ + K S PS+ MK G+PV G Y A EAPKGEFGV
Sbjct: 284 LMPEGPVKSFNYKFSNPSKKMMKNSIEALIHHFKYFTEGFPVNRGEVYVATEAPKGEFGV 343
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+LVSDG++KPYRCKIKAPGF+HL L+ + KG +AD+V II
Sbjct: 344 FLVSDGSNKPYRCKIKAPGFSHLQGLDFMSKGHLIADVVTII 385
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKL+E KTY QALPYFDRLDYVS++ E YS+ VE LL++
Sbjct: 37 GEVVRKADPHVGLLHRGTEKLVEQKTYLQALPYFDRLDYVSIIAQEHTYSIGVETLLDLS 96
Query: 363 VPLRAKYIRVMF 374
+PLR+++IRV+F
Sbjct: 97 IPLRSQFIRVIF 108
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ K+I+ +NFGPQHPAAHGVL L E+
Sbjct: 7 INKEIQAFTLNFGPQHPAAHGVLRLVLEL 35
>gi|383930524|ref|YP_005090330.1| nad7 gene product (mitochondrion) [Phaeodactylum tricornutum]
gi|324309725|gb|ADY18506.1| NADH dehydrogenase subunit 7 [Phaeodactylum tricornutum]
Length = 398
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNH++AVG HA+DVGAMTP W FEEREK+MEFYER SGARMHAAY
Sbjct: 102 AKYIRVIFAEITRILNHLLAVGCHAMDVGAMTPMLWAFEEREKLMEFYERVSGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P+GL+ DIY FI F+ +L E+E+MLT+NR+W QR DVG ++A++ALN+
Sbjct: 162 FRPGGVYSDLPLGLVSDIYIFIEQFTNKLIEIEEMLTDNRIWKQRLIDVGTINAKEALNF 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ Y+ F++P GT G+ +I + EM+QSL IV Q
Sbjct: 222 GFSGVMLRGSGINWDLRKSQPYEIYDQISFEVPTGTSGDCYDRYLIRVIEMKQSLSIVLQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++K+P G ++T+D K P++ E+K G +P TY EAPKGE
Sbjct: 282 CLDKLPSGIIKTEDTKSCPPTKFEVKQSMEALIHHFKMYTNGLSIPANETYIGTEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+S+ T+KPYRCKIKAPGFAHL AL + KG +AD+V II
Sbjct: 342 FGVYLISNNTNKPYRCKIKAPGFAHLQALNYMSKGHLIADVVTII 386
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 59/74 (79%)
Query: 301 FLADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLN 360
+ + V +PHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSM+ E Y LA+E L+N
Sbjct: 36 LVGETVIKANPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMLAQEHSYCLAIENLIN 95
Query: 361 IEVPLRAKYIRVMF 374
+++P RAKYIRV+F
Sbjct: 96 VKIPERAKYIRVIF 109
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 18/23 (78%)
Query: 33 NMVINFGPQHPAAHGVLLLFAEI 55
N INFGPQHPAAHGVL L E+
Sbjct: 14 NFTINFGPQHPAAHGVLRLLLEL 36
>gi|385301926|gb|EIF46084.1| nadh-ubiquinone oxidoreductase 49 kda mitochondrial precursor
[Dekkera bruxellensis AWRI1499]
Length = 525
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/263 (61%), Positives = 198/263 (75%), Gaps = 20/263 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITRILNH+M++ +HA+DVGA+TPF W FEEREK+MEFYER SGARMH+AYVRPGGV
Sbjct: 219 LFGEITRILNHLMSILSHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHSAYVRPGGV 278
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+PIGLLDDIY + + F RLDE E++LT+NR+W QRT D+G++SAEDAL YG SGVM
Sbjct: 279 AKDLPIGLLDDIYMWATQFGDRLDETEELLTDNRIWKQRTVDIGVLSAEDALAYGLSGVM 338
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI +D+RK QPYD Y+ FDI +GT G+ +I M E R+SLRI+EQ IN+MP
Sbjct: 339 LRGSGIPYDIRKAQPYDAYDRMNFDIAVGTKGDCYDRYLIRMVEFRESLRIIEQCINEMP 398
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KIS P R M KGY VPPG TYTA+EAPKGE GVY++
Sbjct: 399 AGPVKVEDFKISPPPRELMKNNMEALIHHFLLFTKGYQVPPGETYTAIEAPKGEMGVYVI 458
Query: 271 SDGTSKPYRCKIKAPGFAHLAAL 293
SDG+ +PY+CKI+ PGF L +
Sbjct: 459 SDGSERPYKCKIRTPGFRQLGCI 481
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/65 (80%), Positives = 58/65 (89%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIE +TY QALPYFDRLDY SMM NE+ +SLAVEKLLNIEVP+R KY
Sbjct: 156 DPHVGLLHRGTEKLIESRTYMQALPYFDRLDYCSMMTNEEVFSLAVEKLLNIEVPIRGKY 215
Query: 370 IRVMF 374
IR +F
Sbjct: 216 IRTLF 220
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 15 WKIINWNDNLVPV-EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
W + N + V +K+IR+ +NFGPQHPAAHGVL + E+
Sbjct: 106 WNLYNADSPEYSVRKKKIRHFTLNFGPQHPAAHGVLRMILEL 147
>gi|449016925|dbj|BAM80327.1| NADH dehydrogenase I iron-sulfur protein 49kDa subunit
[Cyanidioschyzon merolae strain 10D]
Length = 488
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 156/279 (55%), Positives = 207/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRI NH++AV THA+DVGA+TPF W FEEREK EF+ER SGARMHA Y RPGGV
Sbjct: 198 MFAEITRISNHLLAVTTHAMDVGALTPFLWAFEEREKTFEFFERVSGARMHANYFRPGGV 257
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
D+P+GL DDIY + F++R+DE+E+MLT NR+W QR +G++SAEDALN+GF+G M
Sbjct: 258 HQDLPLGLCDDIYAWCRQFASRVDEIEEMLTNNRIWKQRLVGIGVLSAEDALNWGFTGPM 317
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LR SG+ WD+RKVQPYD Y +F IP+G +G+ ++ ++EMRQSL I++Q +N+MP
Sbjct: 318 LRASGVPWDIRKVQPYDAYAYVDFKIPVGVYGDSYDRYLVRVEEMRQSLDIIQQCLNQMP 377
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE+R DD K+S PSR +MK G+ VP G TY AVEAPKGE G+Y++
Sbjct: 378 SGEIRVDDRKVSPPSRHDMKSSMESLIHHFKLYSEGFVVPAGETYVAVEAPKGEEGIYMI 437
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT++PYR I+APGFAHL+ L + +G +AD+V ++
Sbjct: 438 SDGTNRPYRVHIRAPGFAHLSGLNMLARGHMIADVVTLV 476
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKL+EYKTY QALPY DRLDY SM+CNEQ + LAVEKLL IE
Sbjct: 128 GEVVESTDPHVGLLHRGTEKLMEYKTYLQALPYMDRLDYCSMLCNEQVFCLAVEKLLKIE 187
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIR MF
Sbjct: 188 VPLRAKYIRTMFA 200
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K+IRN +NFGPQHPAAHGVL L ++
Sbjct: 100 KEIRNFTLNFGPQHPAAHGVLRLVLQL 126
>gi|269969049|gb|ACZ54754.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969051|gb|ACZ54755.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969053|gb|ACZ54756.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969055|gb|ACZ54757.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969057|gb|ACZ54758.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969059|gb|ACZ54759.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969061|gb|ACZ54760.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969063|gb|ACZ54761.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969065|gb|ACZ54762.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969067|gb|ACZ54763.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969069|gb|ACZ54764.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969071|gb|ACZ54765.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969073|gb|ACZ54766.1| CG1970-PA-like protein [Nasonia giraulti]
gi|269969075|gb|ACZ54767.1| CG1970-PA-like protein [Nasonia giraulti]
Length = 259
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 158/257 (61%), Positives = 202/257 (78%), Gaps = 20/257 (7%)
Query: 73 GAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSAR 132
GA++PFFW+FEEREK+ EF+ER SGARMHA YVRPGGVA+D+P+GLLDDI+ F+ FS R
Sbjct: 1 GALSPFFWVFEEREKIYEFHERVSGARMHACYVRPGGVAVDLPLGLLDDIHDFVGKFSER 60
Query: 133 LDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENF 192
+DEVED+LTENR+W QRT +G++SAE+ALNYG SG+M+R GIKWDLRK PYD Y+
Sbjct: 61 MDEVEDLLTENRIWKQRTVGIGVLSAEEALNYGCSGMMIRACGIKWDLRKSMPYDAYDCV 120
Query: 193 EFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK-- 245
+FD+P+ +G+ ++ M EMRQSLRI+EQ +N+MP GEVR DD+KIS P R+EMK
Sbjct: 121 DFDVPVAWNGDTYDRYLVRMHEMRQSLRIIEQCLNQMPAGEVRVDDLKISPPPRAEMKLS 180
Query: 246 -------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAA 292
GY VPPGATYT+VEAPKGEFGVYLVSDG+S+PYR +++APGF HLA
Sbjct: 181 MEALIHHFKLFSEGYHVPPGATYTSVEAPKGEFGVYLVSDGSSRPYRVRVRAPGFPHLAL 240
Query: 293 LEKIGKGSFLADIVAII 309
L+K+ G LAD+V+++
Sbjct: 241 LKKLAPGLMLADVVSVL 257
>gi|11467085|ref|NP_042561.1| NADH dehydrogenase, subunit 7 [Acanthamoeba castellanii]
gi|3914189|sp|Q37384.1|NDUS2_ACACA RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|562066|gb|AAD11854.1| NADH dehydrogenase, subunit 7 [Acanthamoeba castellanii]
Length = 401
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++++E+TRILNHI+AV THA+DVGA+TPF WLFEEREK+MEFYER SGARMHAAY
Sbjct: 105 AQYIRVIYSELTRILNHILAVTTHAMDVGALTPFLWLFEEREKLMEFYERVSGARMHAAY 164
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D P+GL +DI F+ F RL EVE++L NR+W QR DVGIV+AE+AL++
Sbjct: 165 IRPGGVAQDFPLGLWNDIMQFVEQFFWRLVEVEELLNGNRIWKQRLVDVGIVTAEEALSH 224
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK PY+ Y F+IPIG +G+ +I + EM +SL I++Q
Sbjct: 225 GFSGVMLRGSGIAWDLRKNNPYEVYNKLNFNIPIGKNGDCYDRYLIRVYEMYESLNIIKQ 284
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ MP G ++ +D KI+ P R++MK G+ VP TY VEAPKGE
Sbjct: 285 CLTAMPAGLIKVNDKKITPPERTDMKYSMESLIHHFKLYSEGFNVPENETYACVEAPKGE 344
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVY+VSDG++KPYRCKIKAPGF HL +L + KG +AD+V II
Sbjct: 345 FGVYVVSDGSNKPYRCKIKAPGFLHLQSLNSMSKGHMIADVVTII 389
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLA+EKLLN
Sbjct: 41 GELVRKADPHIGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMSQEHAYSLAIEKLLNCN 100
Query: 363 VPLRAKYIRVMFT 375
VP+RA+YIRV+++
Sbjct: 101 VPIRAQYIRVIYS 113
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 14 KIKNFTMNFGPQHPAAHGVLRLILEL 39
>gi|312076864|ref|XP_003141051.1| hypothetical protein LOAG_05466 [Loa loa]
gi|307763786|gb|EFO23020.1| NADH dehydrogenase [Loa loa]
Length = 475
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/287 (55%), Positives = 205/287 (71%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LFAE+ R+ NH ++ THALD+GAMTP FW+FEEREK+ EF ER SGARMH
Sbjct: 177 PRAKWIRTLFAELNRLANHAFSIVTHALDIGAMTPLFWMFEEREKLFEFNERVSGARMHV 236
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
Y+RPGGV D+P+GLLDDIY + F R+D +EDMLT+NRLW RT+D+G++SA DA
Sbjct: 237 NYIRPGGVGWDLPLGLLDDIYDWAIQFPQRIDTMEDMLTDNRLWKSRTRDIGLISAADAQ 296
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
+ GFSGVMLRGSG+K+D+RK QPY+ Y+ EFDIP+GT G+ + ++EMRQSL+IV
Sbjct: 297 SLGFSGVMLRGSGVKYDVRKAQPYEAYDQIEFDIPVGTKGDCYDRYLCRLEEMRQSLKIV 356
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+NKMP GE++ DD KI P R+EMK GY VP G+ Y +EAP
Sbjct: 357 LDCLNKMPSGEIKVDDHKIVPPKRAEMKNSMESLIHHFKFFSEGYQVPSGSCYVPIEAPN 416
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GE+G Y+V+DGTSKPYRC I+ PGFAHLA L + S ++D+VA+I
Sbjct: 417 GEYGTYVVADGTSKPYRCFIRGPGFAHLAGLHDLTYMSLISDVVAVI 463
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 61/72 (84%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
++V PH+GLLHR TEKLIEYKTYTQA+PYFDRLDY++M+ NEQ ++LAVEKLL IE+
Sbjct: 116 EVVMKATPHVGLLHRATEKLIEYKTYTQAVPYFDRLDYITMLTNEQGFALAVEKLLGIEI 175
Query: 364 PLRAKYIRVMFT 375
P RAK+IR +F
Sbjct: 176 PPRAKWIRTLFA 187
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + ++NFGPQHPAAHGVL L E+
Sbjct: 86 EKPLHYYLLNFGPQHPAAHGVLRLILEL 113
>gi|299756722|ref|XP_001829546.2| NADH-ubiquinone oxidoreductase [Coprinopsis cinerea okayama7#130]
gi|298411803|gb|EAU92506.2| NADH-ubiquinone oxidoreductase [Coprinopsis cinerea okayama7#130]
Length = 441
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/268 (59%), Positives = 202/268 (75%), Gaps = 20/268 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH+MAV TH +DVG +TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 160 AQWIRTLFGEITRILNHLMAVLTHVMDVGGLTPFLWGFEEREKLMEFYERVSGARLHAAY 219
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GLL+DI+ + + F +R+DE+E+++T NR+W +RT +G+V+A+ AL+Y
Sbjct: 220 VRPGGVAFDLPHGLLEDIFKWATQFGSRIDEIEEVVTGNRIWKERTIGIGVVTAQQALDY 279
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVMLRGSG+ WD+RKV PYD Y EFDIP+G +G+ + ++EMR+SLRI+ Q
Sbjct: 280 SFSGVMLRGSGVPWDIRKVAPYDKYAEVEFDIPVGKNGDCYDRYLCRVQEMRESLRIISQ 339
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G V+ DD K++ P R+ MK GY VPPG TYTA+EAPKGE
Sbjct: 340 CLNKMPTGVVKVDDHKLTPPPRAMMKESMESLIHHFKLFSEGYSVPPGETYTAIEAPKGE 399
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAA 292
GVYLVSDGT++PYRC I+APGFAHLA
Sbjct: 400 MGVYLVSDGTNRPYRCSIRAPGFAHLAG 427
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 59/65 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYK YTQALPYFDRLDYVSMM NE YSLAVEKLLN++VP RA++
Sbjct: 103 DPHIGLLHRGTEKLIEYKNYTQALPYFDRLDYVSMMTNELSYSLAVEKLLNVQVPERAQW 162
Query: 370 IRVMF 374
IR +F
Sbjct: 163 IRTLF 167
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ ++R+ +NFGPQHPAAHGVL + E+
Sbjct: 66 ADSKMRHFTVNFGPQHPAAHGVLRMILELN 95
>gi|371907980|emb|CAP18143.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
bristolianum]
Length = 358
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 164/272 (60%), Positives = 205/272 (75%), Gaps = 22/272 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TP W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 88 IRVIFAEITRILNHLLAVGCHAIDVGAITPILWSFEEREKLIEFYERVSGARIHAAYFRP 147
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY FI F+ RLDE+E++LT NR+W QR D+G+V+A DA+ +GFS
Sbjct: 148 GGVSLDLPLGLIDDIYVFIIQFATRLDELEELLTSNRIWKQRLVDIGVVTASDAIAHGFS 207
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ +I ++E+RQSL I+ Q +N
Sbjct: 208 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLIRLEEIRQSLSIIHQCLN 267
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
MP G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 268 NMPQGPVR--DENISPPSRTNLKSSIESLIHHFKLYTEGVVVPSGETYTATEAPKGEFGV 325
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
YLVS+GT++PYRCKIKAPGF HL AL I KG
Sbjct: 326 YLVSNGTNRPYRCKIKAPGFNHLQALNHICKG 357
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL +
Sbjct: 21 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLQCK 80
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 81 VPIRSIYIRVIFA 93
>gi|371907994|emb|CAP18815.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Tribonema
ulotrichoides]
Length = 357
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/275 (58%), Positives = 207/275 (75%), Gaps = 22/275 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGARMHAAY RP
Sbjct: 85 IRVIFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARMHAAYFRP 144
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+P+GL+DDIY FI FS RLDE+E++L+ NR+W QR D+G+VSA DA+ YGFS
Sbjct: 145 GGVSMDLPLGLIDDIYVFIMQFSTRLDEIEEILSTNRIWKQRLVDIGVVSAHDAIAYGFS 204
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ ++ ++E+RQSL I+ Q +N
Sbjct: 205 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLLRLEEIRQSLSIIHQCLN 264
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 265 NIPSGPVR--DENISPPSRTNLKSSIEGLIHHFKLYSEGLVVPSGETYTATEAPKGEFGV 322
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFL 302
YLVS+G+++PYRCKIKAPGF HL +L + KG +
Sbjct: 323 YLVSNGSNRPYRCKIKAPGFNHLQSLNFMCKGHII 357
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y+LAVE LL +
Sbjct: 18 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYALAVENLLIAK 77
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 78 VPIRSIYIRVIFA 90
>gi|297493924|gb|ADI40684.1| NADH dehydrogenase Fe-S protein 2 [Scotophilus kuhlii]
Length = 343
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 162/253 (64%), Positives = 195/253 (77%), Gaps = 21/253 (8%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 92 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 150
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 151 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 210
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+PIG+ G+ + ++E
Sbjct: 211 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEE 270
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 271 MRQSLRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 330
Query: 255 YTAVEAPKGEFGV 267
YTA+EAPKGEFGV
Sbjct: 331 YTAIEAPKGEFGV 343
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 37 GEMVRKCDPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 96
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 97 PPPRAQWIRVLF 108
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 21 NDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
ND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 1 NDVDPPKDTMVSNLTLNFGPQHPAAHGVLRLVMELS 36
>gi|195504349|ref|XP_002099040.1| GE23599 [Drosophila yakuba]
gi|194185141|gb|EDW98752.1| GE23599 [Drosophila yakuba]
Length = 523
Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 154/287 (53%), Positives = 210/287 (73%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +F+EI R+ NH MA+G+ LD GA+TP FWLFEEREK+ EF ERASGAR+HA
Sbjct: 225 PRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLFWLFEEREKLYEFSERASGARLHA 284
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGGVA DIP+G + D+Y FI+ F+ RLDEVED++T+NR+W R +G++SA DAL
Sbjct: 285 AYIRPGGVASDIPLGFMHDLYQFINQFNHRLDEVEDVVTDNRIWRMRNIGIGVISAHDAL 344
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYG +G +LR +G+KWDLRK QPYD Y+ +FD+ +G++G+ ++ M+EMR+S+ I+
Sbjct: 345 NYGCTGPVLRATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVRMREMRESVNII 404
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+Q I++MP GE++ DD+KI P RS MK G+ VPPG TY AVE+PK
Sbjct: 405 KQCIDRMPPGEIKVDDLKICPPQRSRMKEGMEDLIHHFKHFSQGFRVPPGQTYCAVESPK 464
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFG +L+SDG+S+PYRCKI+ +AHLA + K+ LAD+VAII
Sbjct: 465 GEFGAFLISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLADVVAII 511
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 59/66 (89%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS M NE Y LAVEKLLN+EVP RAKY
Sbjct: 170 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSCMANELAYCLAVEKLLNVEVPPRAKY 229
Query: 370 IRVMFT 375
IR MF+
Sbjct: 230 IRTMFS 235
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 2 KYVVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+Y+V YP+ +E K + + PV++ R +INFGP HPAAHGVL + E+
Sbjct: 108 QYIVWYPEGDEWKKRPNFTGKKIPPVDRTFRTKLINFGPAHPAAHGVLRMILEL 161
>gi|392598090|gb|EIW87412.1| NADH-ubiquinone oxidoreductase [Coniophora puteana RWD-64-598 SS2]
Length = 480
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 163/288 (56%), Positives = 213/288 (73%), Gaps = 22/288 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EITR+L+H+MAV THA+DVGA+TPF W FEEREK+MEFYER SGARMHAAYVRPGGV
Sbjct: 178 LFGEITRVLSHLMAVLTHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAYVRPGGV 237
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A DIP GLL+DI+ + + FS+R+DE+E+++T NR+W +RT +GIV+A++AL+Y FSGVM
Sbjct: 238 AFDIPHGLLEDIHMWATQFSSRVDEIEEVVTGNRIWKERTVGIGIVTAQEALDYSFSGVM 297
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSGI WDLRKV PYD Y+ EF++P+G +G+ + ++E R+SL I+ Q +NKMP
Sbjct: 298 LRGSGIPWDLRKVAPYDKYDEVEFEVPVGKNGDCYDRYLCRVQEFRESLHIIHQCLNKMP 357
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ DD K+ P R+ MK GY VPPG TY+A+EAPKGE VYLV
Sbjct: 358 TGAVKIDDNKLVPPPRASMKESMESLIHHFKLFSEGYSVPPGETYSAIEAPKGEMAVYLV 417
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIGLLHR 318
SDGT++PYRCKI+APGFAHLA + + + + ++ I P +HR
Sbjct: 418 SDGTNRPYRCKIRAPGFAHLAGSDFMMRRKY--HLLYDIRPAADCVHR 463
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE C+SLAVEKLLNIEVP RAK+
Sbjct: 115 DPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCFSLAVEKLLNIEVPERAKW 174
Query: 370 IRVMF 374
IR +F
Sbjct: 175 IRTLF 179
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ ++R+ +NFGPQHPAAHGVL + E+
Sbjct: 78 ADAKLRHFTVNFGPQHPAAHGVLRMILELN 107
>gi|283795065|ref|YP_003359481.1| NADH dehydrogenase subunit 7 [Synedra acus]
gi|261279721|gb|ACX62029.1| NADH dehydrogenase subunit 7 [Synedra acus]
Length = 399
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 161/285 (56%), Positives = 209/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA Y
Sbjct: 103 AQYIRVLFAELTRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHACY 162
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P+G L D++ F+ F+ RL E+E+ML+ENR+W QR ++GIV+A+D+ ++
Sbjct: 163 FRPGGVYSDLPLGFLSDVFLFLEQFNIRLIEMEEMLSENRIWKQRLVNIGIVTAQDSYDW 222
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG WDLRK QPY+ Y+ F IP+ +G+ +I + EMRQSL I+EQ
Sbjct: 223 GFSGVMLRGSGTYWDLRKSQPYEIYDKINFIIPVTHNGDCYDRYMIRLMEMRQSLIIIEQ 282
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N MP G VR+++ K++ PSR++MK VP G TY + EAPKGE
Sbjct: 283 CLNNMPKGPVRSENSKVTPPSRADMKQSMESLIHHFKMYTQSIIVPVGETYLSTEAPKGE 342
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT++P++CKIKAPGF HL AL I KG +AD+V II
Sbjct: 343 FGVYLVSNGTNRPFKCKIKAPGFNHLQALNHISKGHMIADVVTII 387
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMM E Y LA+EKLL ++
Sbjct: 39 GEVVVRAEPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMSQEHSYCLAIEKLLQVQ 98
Query: 363 VPLRAKYIRVMFT 375
+P RA+YIRV+F
Sbjct: 99 IPQRAQYIRVLFA 111
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++K+++N INFGPQHPAAHGVL L E+
Sbjct: 9 LKKEVKNFTINFGPQHPAAHGVLRLILEL 37
>gi|371907956|emb|CAP18131.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
sp. A14]
Length = 347
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 163/271 (60%), Positives = 203/271 (74%), Gaps = 22/271 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGARMHAAY RP
Sbjct: 79 IRVIFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARMHAAYFRP 138
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GG+ALD+P GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+V A DAL GFS
Sbjct: 139 GGLALDLPYGLIDDIYVFIIQFSTRLDEIEEILTSNRIWKQRLVDIGVVKASDALALGFS 198
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ ++ ++E+RQSL I+ Q +N
Sbjct: 199 GVILRGSGINWDLRISQPYDVYSSMKFEIPVGTKGDCYDRYLLRLEEIRQSLSIIHQCLN 258
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 259 NIPNGSVR--DENISPPSRTNLKSSIESLIHHFKLYTEGLVVPSGETYTATEAPKGEFGV 316
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGK 298
YL+S+G+++PYRCKIKAPGF HL AL+ I K
Sbjct: 317 YLISNGSNRPYRCKIKAPGFNHLQALDFICK 347
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVEKLLN +
Sbjct: 12 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVEKLLNCK 71
Query: 363 VPLRAKYIRVMFT 375
VP+RA YIRV+F
Sbjct: 72 VPIRAIYIRVIFA 84
>gi|194908591|ref|XP_001981800.1| GG11402 [Drosophila erecta]
gi|190656438|gb|EDV53670.1| GG11402 [Drosophila erecta]
Length = 523
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 210/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F+EI R+ NH MA+G+ LD GA+TP FWLFEEREK+ EF ERASGAR+HAAY
Sbjct: 227 AKFIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLFWLFEEREKLYEFSERASGARLHAAY 286
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA DIP+G L D+Y FI+ F+ RLDEVED++T+NR+W R +G++SA DALNY
Sbjct: 287 IRPGGVASDIPLGFLHDLYQFINQFNDRLDEVEDVVTDNRIWRMRNIGIGVISAHDALNY 346
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G +G +LR +G+KWDLRK QPYD Y+ +FD+ +G++G+ ++ M+EMR+S+ I++Q
Sbjct: 347 GCTGPVLRATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVRMREMRESVNIIKQ 406
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I++MP GE++ DD+KI P RS MK G+ VPPG TY+AVE+PKGE
Sbjct: 407 CIDRMPPGEIKVDDLKICPPQRSRMKEGMEDLIHHFKHFSQGFRVPPGQTYSAVESPKGE 466
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG +L+SDG+S+PYRCKI+ +AHLA + K+ LAD+VAII
Sbjct: 467 FGAFLISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLADVVAII 511
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 59/66 (89%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS M NE Y LAVEKLLN+EVP RAK+
Sbjct: 170 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSCMANELAYCLAVEKLLNVEVPRRAKF 229
Query: 370 IRVMFT 375
IR MF+
Sbjct: 230 IRTMFS 235
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 2 KYVVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+Y+V YP+ +E K + + PV++ R +INFGP HPAAHGVL + E+
Sbjct: 108 QYIVWYPEGDEWKKRPNFTGKKVPPVDRSFRTKLINFGPAHPAAHGVLRMILEL 161
>gi|195445455|ref|XP_002070332.1| GK11092 [Drosophila willistoni]
gi|194166417|gb|EDW81318.1| GK11092 [Drosophila willistoni]
Length = 510
Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LFAE+ R+ NH MAV + LD GA+TP FWLFEEREKM EF ERASGARMHA Y
Sbjct: 214 AKYIRTLFAELMRLTNHTMAVSSAILDCGAITPLFWLFEEREKMYEFSERASGARMHACY 273
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA DIP+G +D+Y FI+ F RLDEVED++T+NR+W R +G ++A +ALNY
Sbjct: 274 IRPGGVASDIPLGFSEDLYAFITQFKDRLDEVEDVITDNRIWRMRNIGIGQITAYEALNY 333
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G SG +LRG+GIKWDLRK QPYD Y EFD+ +G +G+ ++ M EMR+SLRI++Q
Sbjct: 334 GCSGPVLRGTGIKWDLRKQQPYDAYPELEFDVAVGRNGDCYDRYLVRMYEMRESLRIIQQ 393
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ KMP GE++ DD KI+ P R MK G+ VPPG TYTAVE+PKGE
Sbjct: 394 CLEKMPLGEIKVDDRKITPPQRRNMKLGMEDLIHHFKYFSQGFAVPPGQTYTAVESPKGE 453
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGTS+PYRCKI+ +AHLA + KI LAD+ AII
Sbjct: 454 FGVYLVSDGTSRPYRCKIRPASYAHLAMMRKIAPTHMLADVCAII 498
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 59/66 (89%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M NEQ YSLAVEKLLNIEVP RAKY
Sbjct: 157 DPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSCMANEQAYSLAVEKLLNIEVPRRAKY 216
Query: 370 IRVMFT 375
IR +F
Sbjct: 217 IRTLFA 222
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VV++P ++ K + V++ R+ INFGP HPAAHGVL + E+
Sbjct: 97 VVMFPTGDQWKQRPNTKGKKAPLVDRTFRSKFINFGPAHPAAHGVLRMILEL 148
>gi|371907976|emb|CAP18141.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
sessile]
Length = 347
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 162/269 (60%), Positives = 202/269 (75%), Gaps = 22/269 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGARMHAAY RP
Sbjct: 80 IRVIFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARMHAAYFRP 139
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GG+ALD+P GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+V A DAL GFS
Sbjct: 140 GGIALDLPYGLIDDIYVFIIQFSTRLDEIEEILTSNRIWKQRLVDIGVVKASDALALGFS 199
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ ++ ++E+RQSL I+ Q +N
Sbjct: 200 GVILRGSGINWDLRISQPYDVYSSMKFEIPVGTKGDCYDRYLLRLEEIRQSLSIIHQCLN 259
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 260 NIPNGSVR--DENISPPSRTNLKSSIESLIHHFKLYTEGVVVPSGETYTATEAPKGEFGV 317
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
YL+S+G+++PYRCKIKAPGF HL AL+ I
Sbjct: 318 YLISNGSNRPYRCKIKAPGFNHLQALDFI 346
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVEKLLN +
Sbjct: 13 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVEKLLNCK 72
Query: 363 VPLRAKYIRVMFT 375
VP+RA YIRV+F
Sbjct: 73 VPIRAIYIRVIFA 85
>gi|15130890|emb|CAC48232.1| NADH dehydrogenase subunit 7 [Takakia lepidozioides]
Length = 364
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 76 AQYIRVLFREITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 135
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL +DI+ F F++R+DE+E+MLT NR+ QR D+G V+A+ AL++
Sbjct: 136 IRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLTNNRIRKQRLVDIGTVTAQQALDW 195
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WD RK PYD Y +FD+P+GT G+ I + EMRQS+RI+ Q
Sbjct: 196 GFSGVMLRGSGVCWDSRKSAPYDVYNQLDFDVPVGTRGDRYDRYCIRIGEMRQSIRIIMQ 255
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSRS+MK G VP +TYTA EAPKGE
Sbjct: 256 RPNQMPSGMIKADDRKLCPPSRSQMKQSMESSIHHFKLYTEGVSVPASSTYTAAEAPKGE 315
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+GT++PYRCKI+APGFAHL + + K AD+V II
Sbjct: 316 FGVFLVSNGTNRPYRCKIRAPGFAHLQGPDFMSKHHMPADVVTII 360
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QA+P+FDRLDYVSMM E YS AVE+L N E
Sbjct: 12 GEVVERAEPHIGLLHRGTEKLIEYKTYLQAIPHFDRLDYVSMMAQEHAYSSAVERLCNCE 71
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 72 VPLRAQYIRVLF 83
>gi|402496570|ref|YP_006555830.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398649843|emb|CCF78013.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 390
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/280 (57%), Positives = 208/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ + + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 99 VLFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 158
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A D+P GL++DI FI F +D+V+D+LTENR+W QRT + +S + L++GFSG
Sbjct: 159 IAADVPEGLIEDIAKFIEQFPKYIDDVDDLLTENRIWKQRTVGISKMSIKQVLDWGFSGP 218
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +FDIPIG +G+ ++ M+E+RQS +V+Q I KM
Sbjct: 219 MLRAAGLAWDLRKSQPYEVYDQLDFDIPIGRNGDCYDRYLVRMEEIRQSTSLVKQCIEKM 278
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+T+D KIS P R+EMK GY VP G TY AVEAPKGEFGVY+
Sbjct: 279 PRGPVKTEDRKISPPPRAEMKKSMEALIHHFKLYSEGYHVPEGETYAAVEAPKGEFGVYI 338
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG L+DI AII
Sbjct: 339 VSDGTNQPYRCRIRAPGFAHLQALDFMAKGHMLSDIAAII 378
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 30 GEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCE 89
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 90 VPIRAKYLRVLFC 102
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
++ M++NFGPQHPAAHGVL L E+
Sbjct: 4 LKTMMLNFGPQHPAAHGVLRLVLEM 28
>gi|58697356|ref|ZP_00372694.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila simulans]
gi|58536257|gb|EAL59788.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila simulans]
Length = 313
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 208/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ V + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 22 VLFCELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 81
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A D+P L++DI FI F +D+V+++LTENR+W QRT + +S + AL++GFSG
Sbjct: 82 IAADVPEDLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGP 141
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +FDIPIG +G+ ++ M E+RQS+ +V+Q I KM
Sbjct: 142 MLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM 201
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G+++T+D KIS PSR+EMK GY VP G Y VEAPKGEFGVY+
Sbjct: 202 PEGQIKTEDRKISPPSRAEMKKSMEALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYI 261
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG LAD+ AII
Sbjct: 262 VSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAII 301
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 351 YSLAVEKLLNIEVPLRAKYIRVMFT 375
YSL VEKLL EVP+RAKY+RV+F
Sbjct: 1 YSLCVEKLLQCEVPIRAKYLRVLFC 25
>gi|42520418|ref|NP_966333.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|225630184|ref|YP_002726975.1| NADH dehydrogenase I, D subunit [Wolbachia sp. wRi]
gi|81652591|sp|Q73HJ8.1|NUOD_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|42410157|gb|AAS14267.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|225592165|gb|ACN95184.1| NADH dehydrogenase I, D subunit [Wolbachia sp. wRi]
Length = 390
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 208/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ V + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 99 VLFCELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 158
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A D+P L++DI FI F +D+V+++LTENR+W QRT + +S + AL++GFSG
Sbjct: 159 IAADVPEDLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGP 218
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +FDIPIG +G+ ++ M E+RQS+ +V+Q I KM
Sbjct: 219 MLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM 278
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G+++T+D KIS PSR+EMK GY VP G Y VEAPKGEFGVY+
Sbjct: 279 PEGQIKTEDRKISPPSRAEMKKSMEALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYI 338
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG LAD+ AII
Sbjct: 339 VSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAII 378
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 30 GEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCE 89
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 90 VPIRAKYLRVLFC 102
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
++ M++NFGPQHPAAHGVL L E+
Sbjct: 4 LKTMMLNFGPQHPAAHGVLRLVLEM 28
>gi|371907958|emb|CAP18132.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Heterococcus
pleurococcoides]
Length = 329
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 162/267 (60%), Positives = 205/267 (76%), Gaps = 18/267 (6%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGARMHAAY RP
Sbjct: 62 IRVLFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARMHAAYFRP 121
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+PIGLLDDIY FIS FS RLDE+E++LT NR+W R D+G+VSA+DAL++GFS
Sbjct: 122 GGVSIDLPIGLLDDIYIFISQFSRRLDEIEEILTNNRIWKLRLVDIGVVSAKDALDHGFS 181
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSG +WDLR+ Q YD Y + +FDIP+GT+G+ + + E+R+SLRI+ Q IN
Sbjct: 182 GVILRGSGFQWDLRQAQSYDVYSSIKFDIPVGTNGDCYDRYLCRLSEIRESLRIIHQCIN 241
Query: 223 KMPGGEVRTDDMKISTPS--RSEM-----------KGYPVPPGATYTAVEAPKGEFGVYL 269
+P GEVR ++ + S +S + +G VP G Y A EAPKGEFGVYL
Sbjct: 242 NIPLGEVRDENFGVQKRSIIKSSIEALIHHFKFYSEGVVVPSGEIYLATEAPKGEFGVYL 301
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKI 296
VS+GT+KPYRCKIKAPGF HL AL+ I
Sbjct: 302 VSNGTNKPYRCKIKAPGFNHLQALDAI 328
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 52/66 (78%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE K + QALPYFDRLDYVS++C E Y+L VE L + PLR+ Y
Sbjct: 2 DPHIGLLHRGTEKLIENKNFLQALPYFDRLDYVSIICQEHTYALVVEALTKTKPPLRSMY 61
Query: 370 IRVMFT 375
IRV+F
Sbjct: 62 IRVLFA 67
>gi|190571038|ref|YP_001975396.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019559|ref|ZP_03335365.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|218534466|sp|B3CLH1.1|NUOD_WOLPP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|190357310|emb|CAQ54739.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994981|gb|EEB55623.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 390
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/280 (57%), Positives = 208/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ + + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 99 VLFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 158
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A DIP GL++DI FI F +D+V+++LTENR+W QRT + +S + AL++GFSG
Sbjct: 159 LAADIPEGLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGP 218
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +FDIPIG +G+ ++ M E+RQS+ +V+Q I KM
Sbjct: 219 MLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSVSLVKQCIEKM 278
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G ++T+D KIS P R+EMK GY VP G Y AVEAPKGEFGVY+
Sbjct: 279 PEGPIKTEDRKISPPPRAEMKESMEAMIHHFKLYSEGYHVPEGEAYVAVEAPKGEFGVYI 338
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG LADI AII
Sbjct: 339 VSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADIAAII 378
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 30 GEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCE 89
Query: 363 VPLRAKYIRVMFT 375
+P+RAKY+RV+F
Sbjct: 90 IPIRAKYLRVLFC 102
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
++ M++NFGPQHPAAHGVL L E+
Sbjct: 4 LKTMMLNFGPQHPAAHGVLRLVLEM 28
>gi|327286118|ref|XP_003227778.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Anolis carolinensis]
Length = 322
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/244 (65%), Positives = 194/244 (79%), Gaps = 20/244 (8%)
Query: 86 EKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRL 145
++M EFYER SGARMHAAYVRPGGV D+P+GL+DDIY F+ FS R+DEVE+MLT NR+
Sbjct: 67 QQMFEFYERVSGARMHAAYVRPGGVHQDMPLGLMDDIYEFVKNFSIRIDEVEEMLTNNRI 126
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W RT D+G+V++E+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+
Sbjct: 127 WKNRTVDIGVVTSEEALNYGFSGVMLRGSGIQWDLRKSQPYDVYDQVEFDVPIGSRGDCY 186
Query: 204 ---VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK--------------- 245
+ ++EMRQSLRI+ QA+NKMP GEV+ DD KIS P R+EMK
Sbjct: 187 DRYLCRVEEMRQSLRIIVQALNKMPEGEVKVDDAKISPPKRAEMKTSMEALIHHFKLYTE 246
Query: 246 GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADI 305
GY VPPGATYTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ +G LAD+
Sbjct: 247 GYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSQGHMLADV 306
Query: 306 VAII 309
VAII
Sbjct: 307 VAII 310
>gi|221459469|ref|NP_651392.2| CG11913 [Drosophila melanogaster]
gi|220903213|gb|AAF56465.2| CG11913 [Drosophila melanogaster]
Length = 523
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 209/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F+EI R+ NH MA+G+ LD GA+TP FWLFEEREK+ EF ERASGAR+HAAY
Sbjct: 227 AKYIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLFWLFEEREKLYEFSERASGARLHAAY 286
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA DIP+G L D+Y FI+ F+ RLDEVED++T+NR+W R +G++SA DALNY
Sbjct: 287 IRPGGVASDIPLGFLHDLYQFINQFNERLDEVEDVVTDNRIWRMRNIGIGVISAHDALNY 346
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G +G +LR +G+KWDLRK QPYD Y+ +FD+ +G++G+ ++ M+EMR+S+ I++Q
Sbjct: 347 GCTGPVLRATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVRMREMRESVNIIKQ 406
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I+ MP GE++ DD+KI P RS+MK G+ VPPG TY AVE+PKGE
Sbjct: 407 CIDAMPPGEIKVDDLKICPPQRSKMKEGMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGE 466
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG +L+SDG+S+PYRCKI+ +AHLA + K+ LAD+VAII
Sbjct: 467 FGAFLISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLADVVAII 511
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 59/66 (89%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS M NE Y LAVEKLLN+EVP RAKY
Sbjct: 170 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSCMANELAYCLAVEKLLNVEVPRRAKY 229
Query: 370 IRVMFT 375
IR MF+
Sbjct: 230 IRTMFS 235
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 2 KYVVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+Y+V YP+ +E K + + PV++ R +INFGP HPAAHGVL + E+
Sbjct: 108 QYIVWYPEGDEWKKRPNFKGKQIPPVDRTFRTKLINFGPAHPAAHGVLRMILEL 161
>gi|99036040|ref|ZP_01315077.1| hypothetical protein Wendoof_01000071 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 384
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 208/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ V + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 93 VLFCELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 152
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A D+P L++DI FI F +D+V+++LTENR+W QRT + +S + AL++GFSG
Sbjct: 153 IAADVPEDLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGP 212
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +FDIPIG +G+ ++ M E+RQS+ +V+Q I KM
Sbjct: 213 MLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM 272
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G+++T+D KIS PSR+EMK GY VP G Y VEAPKGEFGVY+
Sbjct: 273 PEGQIKTEDRKISPPSRAEMKKSMEALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYI 332
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG LAD+ AII
Sbjct: 333 VSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAII 372
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 24 GEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCE 83
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 84 VPIRAKYLRVLFC 96
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 34 MVINFGPQHPAAHGVLLLFAEI 55
M++NFGPQHPAAHGVL L E+
Sbjct: 1 MMLNFGPQHPAAHGVLRLVLEM 22
>gi|373450734|ref|ZP_09542701.1| NADH-quinone oxidoreductase chain D [Wolbachia pipientis wAlbB]
gi|371932056|emb|CCE77714.1| NADH-quinone oxidoreductase chain D [Wolbachia pipientis wAlbB]
Length = 390
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 210/280 (75%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ + + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 99 VLFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 158
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A DIP GL++DI FI+ F +D+V+++LTENR+W QRT ++ +S ++AL++GFSG
Sbjct: 159 LAADIPEGLIEDIAKFIAQFPKYIDDVDELLTENRIWKQRTVEISKISIKEALDWGFSGP 218
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +FDIPIG +G+ ++ M E+RQS+ +V+Q I K+
Sbjct: 219 MLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKI 278
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G ++T+D KIS P R EM+ GY VP G Y AVEAPKGEFGVY+
Sbjct: 279 PEGPIKTEDRKISPPPREEMQESMEAMIHHFKLYSEGYHVPEGEAYVAVEAPKGEFGVYI 338
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG LADI AII
Sbjct: 339 VSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADIAAII 378
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 30 GEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCE 89
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 90 VPIRAKYLRVLFC 102
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
++ M++NFGPQHPAAHGVL L E+
Sbjct: 4 LKTMMLNFGPQHPAAHGVLRLVLEM 28
>gi|85857674|gb|ABC86372.1| IP11827p [Drosophila melanogaster]
Length = 530
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 209/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F+EI R+ NH MA+G+ LD GA+TP FWLFEEREK+ EF ERASGAR+HAAY
Sbjct: 234 AKYIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLFWLFEEREKLYEFSERASGARLHAAY 293
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA DIP+G L D+Y FI+ F+ RLDEVED++T+NR+W R +G++SA DALNY
Sbjct: 294 IRPGGVASDIPLGFLHDLYQFINQFNERLDEVEDVVTDNRIWRMRNIGIGVISAHDALNY 353
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G +G +LR +G+KWDLRK QPYD Y+ +FD+ +G++G+ ++ M+EMR+S+ I++Q
Sbjct: 354 GCTGPVLRATGVKWDLRKQQPYDAYDEMDFDVVVGSNGDCYDRYLVRMREMRESVNIIKQ 413
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I+ MP GE++ DD+KI P RS+MK G+ VPPG TY AVE+PKGE
Sbjct: 414 CIDAMPPGEIKVDDLKICPPQRSKMKEGMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGE 473
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG +L+SDG+S+PYRCKI+ +AHLA + K+ LAD+VAII
Sbjct: 474 FGAFLISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLADVVAII 518
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 59/66 (89%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS M NE Y LAVEKLLN+EVP RAKY
Sbjct: 177 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSCMANELAYCLAVEKLLNVEVPRRAKY 236
Query: 370 IRVMFT 375
IR MF+
Sbjct: 237 IRTMFS 242
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 2 KYVVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+Y+V YP+ +E K + + PV++ R +INFGP HPAAHGVL + E+
Sbjct: 115 QYIVWYPEGDEWKKRPNFKGKQIPPVDRTFRTKLINFGPAHPAAHGVLRMILEL 168
>gi|358051059|ref|YP_004935307.1| NADH dehydrogenase subunit 7 (mitochondrion) [Silene noctiflora]
gi|343526969|gb|AEM46212.1| NADH dehydrogenase subunit 7 (mitochondrion) [Silene noctiflora]
Length = 394
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRLLNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F +R+DE+E+M T NR+W R D+G V+AE A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFPSRIDELEEMSTANRIWKDRLVDIGTVTAEQAKSW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD Y +FD+P+GT G+ I ++EMRQSLR++ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRRAAPYDVYHQLDFDVPVGTRGDCYDRYCIRIEEMRQSLRLIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N++P G +++DD K+ PSRS MK G+ VP + YT VEAPKGE
Sbjct: 278 CLNELPLGLIKSDDRKLCPPSRSRMKLSMESLIHHFELYTEGFSVPSSSVYTGVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAH L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHSQGLDSMSKHHMLADVVTII 382
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YS AVE LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSSAVESLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++K+I+ NFGPQHPAAHGV L E+
Sbjct: 4 MKKEIKTFTSNFGPQHPAAHGVSRLVLEMN 33
>gi|58584385|ref|YP_197958.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|75508014|sp|Q5GTF8.1|NUOD_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|58418701|gb|AAW70716.1| NADH:ubiquinone oxidoreductase chain D [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 390
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 209/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ + + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 99 VLFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 158
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA D+P GL++DI FI F +D+V+++LTENR+W QRT + +S + AL++GFSG
Sbjct: 159 VAADVPEGLIEDIAKFIEQFPQYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGP 218
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +FDIP+G +G+ ++ M+E+RQS+ +V+Q I K+
Sbjct: 219 MLRAAGLAWDLRKSQPYEIYDQLDFDIPVGQNGDCYDRYLVRMEEIRQSVSLVKQCIEKI 278
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+T+D KIS P R+EMK GY VP G Y AVEAPKGEFGVY+
Sbjct: 279 PEGPVKTEDRKISPPPRTEMKRSMEALIHHFKLYSEGYHVPEGEAYAAVEAPKGEFGVYI 338
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG LAD+ AII
Sbjct: 339 VSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAII 378
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 30 GEIIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCE 89
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 90 VPIRAKYLRVLFC 102
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
++ M++NFGPQHPAAHGVL L E+
Sbjct: 4 LKTMMLNFGPQHPAAHGVLRLVLEM 28
>gi|371908010|emb|CAP18823.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Botrydium
granulatum]
Length = 353
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 161/267 (60%), Positives = 204/267 (76%), Gaps = 22/267 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNH++AVG HA+D+GA+TPF W FEEREK++EFYER SGARMHAAY+RP
Sbjct: 87 IRVLFAEITRILNHLLAVGCHAIDIGAITPFLWAFEEREKLIEFYERVSGARMHAAYIRP 146
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+P GL+DDIY F FS RLDE+E++LT NR+W QR D+G+V+A DAL GFS
Sbjct: 147 GGVSIDLPSGLMDDIYVFAIQFSTRLDEIEEILTSNRIWKQRLVDIGVVNASDALALGFS 206
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGI WDLR QPYD Y + +F++P+GT G+ +I ++E+RQSL+I+ Q +N
Sbjct: 207 GVMLRGSGINWDLRVSQPYDVYGSIDFEVPVGTKGDCYDRYLIRLEEIRQSLKIIHQCLN 266
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
++P G V D IS PSR+ +K G+ VP G TYTA EAPKGEFGV
Sbjct: 267 QIPLGPVH--DENISPPSRTNLKSSIESLIHHFKLYSEGFVVPCGETYTATEAPKGEFGV 324
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALE 294
YLVS+GT++PYRCKIKAPGF HL AL+
Sbjct: 325 YLVSNGTNRPYRCKIKAPGFNHLQALD 351
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ EQ YSLAVEKLLN +
Sbjct: 20 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEQTYSLAVEKLLNCK 79
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 80 VPIRSIYIRVLFA 92
>gi|371907970|emb|CAP18138.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
sp. 907]
Length = 353
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 162/269 (60%), Positives = 202/269 (75%), Gaps = 22/269 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGARMHAAY RP
Sbjct: 87 IRVIFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARMHAAYFRP 146
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GG+ALD+P GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+V A DAL GFS
Sbjct: 147 GGLALDLPYGLIDDIYVFIIQFSTRLDEIEEILTSNRIWKQRLVDIGVVKASDALALGFS 206
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ ++ ++E+RQSL I+ Q +N
Sbjct: 207 GVILRGSGINWDLRISQPYDVYSSMKFEIPVGTKGDCYDRYLLRLEEIRQSLSIIHQCLN 266
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 267 NIPNGSVR--DENISPPSRTNLKSSIESLIHHFKLYTEGLVVPSGETYTATEAPKGEFGV 324
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
YL+S+G+++PYRCKIKAPGF HL AL+ I
Sbjct: 325 YLISNGSNRPYRCKIKAPGFNHLQALDFI 353
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVEKLLN +
Sbjct: 20 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVEKLLNCK 79
Query: 363 VPLRAKYIRVMFT 375
VP+RA YIRV+F
Sbjct: 80 VPIRAIYIRVIFA 92
>gi|195354912|ref|XP_002043940.1| GM17844 [Drosophila sechellia]
gi|194129178|gb|EDW51221.1| GM17844 [Drosophila sechellia]
Length = 502
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 209/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F+EI R+ NH MA+G+ LD GA+TP FWLFEEREK+ EF ERASGAR+HAAY
Sbjct: 206 AKYIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLFWLFEEREKLYEFSERASGARLHAAY 265
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA DIP+G L D+Y FI+ F+ RLDEVED++T+NR+W R +G++SA DALNY
Sbjct: 266 IRPGGVASDIPLGFLHDLYQFINLFNERLDEVEDVVTDNRIWRMRNIGIGVISAHDALNY 325
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G +G +LR +G+KWDLRK QPYD Y+ +FD+ +G++G+ ++ M+EMR+S+ I++Q
Sbjct: 326 GCTGPVLRATGVKWDLRKQQPYDAYDEIDFDVVVGSNGDCYDRYLVRMREMRESVNIIKQ 385
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I+ MP GE++ DD+KI P RS+MK G+ VPPG TY AVE+PKGE
Sbjct: 386 CIDSMPPGEIKVDDLKICPPQRSKMKEGMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGE 445
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG +L+SDG+S+PYRCKI+ +AHLA + K+ LAD+VAII
Sbjct: 446 FGAFLISDGSSRPYRCKIRPASYAHLALMAKMAPAHLLADVVAII 490
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 59/66 (89%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS M NE Y LAVEKLLN+EVP RAKY
Sbjct: 149 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSCMANELAYCLAVEKLLNVEVPRRAKY 208
Query: 370 IRVMFT 375
IR MF+
Sbjct: 209 IRTMFS 214
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 3 YVVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
Y+V YP+ +E K + + PV++ R +INFGP HPAAHGVL + E+
Sbjct: 88 YIVRYPEGDEWKKRPNFKGKQIPPVDRTFRTKLINFGPAHPAAHGVLRMILEL 140
>gi|371907992|emb|CAP18814.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Tribonema
viride]
Length = 340
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 161/269 (59%), Positives = 203/269 (75%), Gaps = 22/269 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGARMHAAY RP
Sbjct: 74 IRVIFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARMHAAYFRP 133
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+P+GL+DDIY FI FS RLDE+E++L+ NR+W QR D+G+VSA A+ YGFS
Sbjct: 134 GGVSIDLPLGLIDDIYVFIMQFSTRLDEIEEILSTNRIWKQRLVDIGVVSAHHAIAYGFS 193
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ ++ ++EMRQSL I+ Q +N
Sbjct: 194 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLLRLEEMRQSLSIIHQCLN 253
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 254 NIPSGPVR--DENISPPSRTNLKSSIEGLIHHFKLYSEGLVVPSGETYTATEAPKGEFGV 311
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
YLVS+G+++PYRCKIKAPGF HL +L I
Sbjct: 312 YLVSNGSNRPYRCKIKAPGFNHLQSLNFI 340
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y+LAVE LL +
Sbjct: 7 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYALAVENLLIAK 66
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 67 VPIRSIYIRVIFA 79
>gi|186920135|ref|YP_001874789.1| NADH dehydrogenase subunit 7 [Hemiselmis andersenii]
gi|186461081|gb|ACC78243.1| NADH dehydrogenase subunit 7 [Hemiselmis andersenii]
Length = 399
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/282 (56%), Positives = 206/282 (73%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EITRILNH++A+ HA+DVGA+TP W FEEREK+MEFYER SGARMHAAY+RP
Sbjct: 106 IRVLFSEITRILNHLLAICCHAMDVGALTPILWGFEEREKLMEFYERISGARMHAAYIRP 165
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGVA DIP+GL +DI+ F + FS+R+DE+E++LTENR+W QR D+G+++ E AL++G +
Sbjct: 166 GGVASDIPLGLCEDIFKFANQFSSRIDELEELLTENRIWKQRLVDIGVITFEQALDWGVT 225
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
G +LR +G WDLRK QPYD Y+ FD+PIG G+ I ++EMRQSLRI+ Q +N
Sbjct: 226 GPLLRSTGFFWDLRKTQPYDVYDQVVFDVPIGKKGDCYDRYCIRIEEMRQSLRIILQCLN 285
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP V+TDD KI+ P R +MK G+ +P Y VE PKGEFGV
Sbjct: 286 QMPETNVKTDDRKIAAPLRVDMKSSMESLIHHFKLYTEGFSIPASEGYCGVEHPKGEFGV 345
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YL++DGT+K YRCKI APGF HL AL+ + KG LAD+VAII
Sbjct: 346 YLLADGTNKAYRCKINAPGFVHLQALDFMAKGHLLADVVAII 387
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVSMM NE YSL +EKLL E
Sbjct: 39 GEVVERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSMMVNEHAYSLVIEKLLFCE 98
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIRV+F+
Sbjct: 99 VPLRAKYIRVLFS 111
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 23 NLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
N V +K +++ INFGPQHPAAHGVL L E+
Sbjct: 5 NQVDNKKHLKHFTINFGPQHPAAHGVLRLVLELN 38
>gi|189183821|ref|YP_001937606.1| NADH dehydrogenase subunit D [Orientia tsutsugamushi str. Ikeda]
gi|218534441|sp|B3CSH1.1|NUOD_ORITI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|189180592|dbj|BAG40372.1| NADH dehydrogenase I chain D [Orientia tsutsugamushi str. Ikeda]
Length = 396
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 158/285 (55%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+E+TRILNH + + T ALDVGA TP W+FEEREK+MEFYER SG+R+HA Y
Sbjct: 100 AQYIRVMFSELTRILNHTLNIATQALDVGATTPLLWMFEEREKIMEFYERVSGSRLHANY 159
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+P GL+++I F F ++ ++E +LT+NR+W QRT D+GIVS + A+++
Sbjct: 160 FRPGGVSQDLPEGLIENIADFCEQFPCKIADLETLLTDNRIWKQRTVDIGIVSKQQAMDW 219
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPYD Y N +FD+ IG +G+ +I ++EM QS++I++Q
Sbjct: 220 GFSGVMLRGSGIAWDLRKSQPYDQYANLDFDVAIGKNGDCYDRYLIRIEEMYQSIKIIKQ 279
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP GE+RT D IS P RSE+K GY VP G Y AVEAPKGE
Sbjct: 280 CIQKMPAGEIRTQDPSISPPKRSEIKKSMEALINHFKLYSEGYNVPAGEVYAAVEAPKGE 339
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL SDGT++PYRC+IKAPGFAHL L+ + +G L+DI+ II
Sbjct: 340 FGVYLYSDGTNRPYRCRIKAPGFAHLQGLDFMARGHSLSDIITII 384
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYVS MC E ++LA+E LL E
Sbjct: 36 GEIVERADPHIGLLHRGTEKLIEYKTYLQAIPYFDRLDYVSPMCQEHAFALAIEHLLKCE 95
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRVMF+
Sbjct: 96 VPLRAQYIRVMFS 108
>gi|347801036|gb|AEP20740.1| NADH dehydrogenase subunit 7 (mitochondrion) [endosymbiont of
Kryptoperidinium foliaceum]
Length = 397
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 162/285 (56%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++AVG HA+DVGAMTP W FEEREK+MEFYER SGARMHAAY
Sbjct: 101 AQYIRVLFAEITRILNHLLAVGCHAMDVGAMTPMLWGFEEREKLMEFYERVSGARMHAAY 160
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL DIY F F R+ E+E+MLTENR+W QR D+G+V+ + A N+
Sbjct: 161 YRPGGVHTDLPKGLLTDIYLFKEQFKLRILEIEEMLTENRIWKQRLVDIGVVTLDQAQNW 220
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG++WDLRK QPY+ Y +FDI G +G+ +I + EM+QS+RI+EQ
Sbjct: 221 GFSGVMLRGSGLEWDLRKSQPYEVYSELDFDILAGANGDCYDRYLIRIFEMKQSVRIIEQ 280
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++ +P G ++TDD KI+ PSR ++K G +P TYT EAPKGE
Sbjct: 281 CLDNIPFGPIKTDDNKITPPSRFDIKQSMESLIHHFKFYTSGINIPANETYTGTEAPKGE 340
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+S+ ++KPYRCKIKAPGFAHL L+ + +G +AD+V II
Sbjct: 341 FGVYLISNNSNKPYRCKIKAPGFAHLQGLDMMSRGHMIADVVTII 385
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMM E Y LA+EKLLN
Sbjct: 37 GEVVERAEPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMSQEHTYCLAIEKLLNCS 96
Query: 363 VPLRAKYIRVMFT 375
+P RA+YIRV+F
Sbjct: 97 IPRRAQYIRVLFA 109
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+I+N +NFGPQHPAAHGVL L E+T
Sbjct: 9 KEIKNFTVNFGPQHPAAHGVLRLVLELT 36
>gi|388579585|gb|EIM19907.1| putative NADH-ubiquinone oxidoreductase [Wallemia sebi CBS 633.66]
Length = 449
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 212/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF+EITRILNHIMAV +HA+DVGA+TPF + FEEREK+MEFYER SGAR+HAAY
Sbjct: 153 AQWIRTLFSEITRILNHIMAVLSHAMDVGALTPFLYGFEEREKLMEFYERVSGARLHAAY 212
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P GLL+DI+ + + FS+R+DE+E+++T NR+W +RT VG V+A++AL+Y
Sbjct: 213 IRPGGVAFDLPHGLLEDIHKWATQFSSRIDEIEEIVTGNRIWKERTIGVGRVTADEALDY 272
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSG MLRGSGI WDLRK QPYD Y +FD+P+G +G+ + ++EMR+++RI+ Q
Sbjct: 273 AFSGPMLRGSGIPWDLRKTQPYDKYSEVDFDVPVGENGDCYDRYICRVQEMREAVRIIGQ 332
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
NKMP G + DD KI P R+ MK G+ VP G TYTA+EAPKGE
Sbjct: 333 CCNKMPPGPYKIDDHKIVPPPRASMKESMESLIHHFKIFSEGFSVPQGETYTAIEAPKGE 392
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+L+SDG+++PY+CKI+APGFAHLA + I + FL D+VAII
Sbjct: 393 MAVHLISDGSNRPYKCKIRAPGFAHLAGADFISRHHFLPDMVAII 437
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 55/66 (83%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL+EYK Y QALPY DRLDY S M NE Y+ AVEKLLNIEVP RA++
Sbjct: 96 DPHIGLLHRGTEKLMEYKNYVQALPYMDRLDYSSAMTNELSYTRAVEKLLNIEVPERAQW 155
Query: 370 IRVMFT 375
IR +F+
Sbjct: 156 IRTLFS 161
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ +R+ +NFGPQHPAAHGVL L E+
Sbjct: 60 DADLRHFTVNFGPQHPAAHGVLRLILELN 88
>gi|371907986|emb|CAP18146.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
tribonematoides]
Length = 354
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 163/269 (60%), Positives = 201/269 (74%), Gaps = 22/269 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGARMHAAY RP
Sbjct: 88 IRVIFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARMHAAYFRP 147
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+P GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+VSA DA+ GFS
Sbjct: 148 GGVSIDLPYGLIDDIYVFIMQFSTRLDEIEEILTSNRIWKQRLVDIGVVSASDAIALGFS 207
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSGI WDLR QPYD Y + F+IP+GT G+ ++ ++E+RQSL I+ Q +N
Sbjct: 208 GVMLRGSGINWDLRISQPYDVYSSLNFEIPVGTKGDCYDRYLLRVEEIRQSLSIIHQCLN 267
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G V+ D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 268 GIPNGPVK--DENISPPSRTNLKSSIEALIHHFKLYTEGVVVPSGETYTATEAPKGEFGV 325
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
YLVS+GT++PYRCKIKAPGF HL AL I
Sbjct: 326 YLVSNGTNRPYRCKIKAPGFNHLQALNFI 354
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSM+ E YSLAVE LL +
Sbjct: 21 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMIGQEHTYSLAVENLLQCK 80
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 81 VPIRSIYIRVIFA 93
>gi|11466595|ref|NP_066485.1| NADH dehydrogenase subunit 7 [Rhodomonas salina]
gi|10444182|gb|AAG17756.1|AF288090_32 NADH dehydrogenase subunit 7 [Rhodomonas salina]
Length = 399
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+EITRILNH++A+ HA+DVGA+TP W FEEREK+MEFYER SGARMHAAY
Sbjct: 103 AQFIRVIFSEITRILNHLLAICCHAMDVGALTPILWGFEEREKLMEFYERVSGARMHAAY 162
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+P+GL DI+ F FS+R+DE+E++LTENR+W QR DVG+++ E ALN
Sbjct: 163 FRPGGVSQDLPLGLCADIFKFCEQFSSRIDELEELLTENRIWKQRLVDVGVITFEQALNL 222
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G +G +LR +G WDLR+ PY+ Y+ +FDIPIG +G+ I ++EMRQSL I+ Q
Sbjct: 223 GLTGPLLRSTGFSWDLRRTHPYEIYDKLDFDIPIGKNGDSYDRYCIRIEEMRQSLSIIVQ 282
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N MP G + ++MKIS PSR +MK G+ +P G Y AVE PKGE
Sbjct: 283 CLNNMPQGSFKVNNMKISPPSRVDMKRSMESLIHHFKYFSEGFTIPKGIVYAAVEHPKGE 342
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV LV+DGT+KPYRCKIKAPGF HL AL+ + +G LAD+V II
Sbjct: 343 FGVSLVTDGTNKPYRCKIKAPGFIHLQALDFLSRGHLLADLVTII 387
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 59/66 (89%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE KTY Q LPYFDRLDYVSMM NE + LA+E+LLNIEVPLRA++
Sbjct: 46 DPHIGLLHRGTEKLIENKTYIQGLPYFDRLDYVSMMINEHAFCLAIERLLNIEVPLRAQF 105
Query: 370 IRVMFT 375
IRV+F+
Sbjct: 106 IRVIFS 111
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 23 NLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
N + K I+N +NFGPQHPAAHGVL L E+
Sbjct: 5 NQLDHSKNIKNFTVNFGPQHPAAHGVLRLILELN 38
>gi|296415316|ref|XP_002837336.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633200|emb|CAZ81527.1| unnamed protein product [Tuber melanosporum]
Length = 279
Score = 337 bits (863), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 157/267 (58%), Positives = 199/267 (74%), Gaps = 20/267 (7%)
Query: 63 MAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDI 122
M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV D+P+GLLDDI
Sbjct: 1 MSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDLPVGLLDDI 60
Query: 123 YHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRK 182
Y + + F R+DE E++LT+NR+WI RTK VG+VSA +A+NY F+GVMLRGSG+ WD+RK
Sbjct: 61 YQWATQFGDRIDETEELLTDNRIWIARTKGVGVVSAAEAINYSFTGVMLRGSGVAWDIRK 120
Query: 183 VQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKIS 237
PYD Y +FD+P+G G+ + M+E RQSLRI+ Q +NKMP G +R +D KIS
Sbjct: 121 SAPYDAYGQVDFDVPVGQAGDCYDRYLCRMEEFRQSLRIIHQCLNKMPPGPIRVEDYKIS 180
Query: 238 TPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKI 282
P R M KGY VPPG TY+A+EAPKGE GV++VSDG+ +PYRCKI
Sbjct: 181 PPPRVAMKENMEALIHHFLLYTKGYAVPPGETYSAIEAPKGEMGVFVVSDGSERPYRCKI 240
Query: 283 KAPGFAHLAALEKIGKGSFLADIVAII 309
+APGFAHL + ++I +G LAD VAII
Sbjct: 241 RAPGFAHLGSFDQISRGHLLADAVAII 267
>gi|11466472|ref|NP_038175.1| NADH dehydrogenase subunit 7 [Chrysodidymus synuroideus]
gi|7110469|gb|AAF36941.1|AF222718_15 NADH dehydrogenase subunit 7 [Chrysodidymus synuroideus]
Length = 398
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 164/285 (57%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH++AVG HALDVGAM+PF W FEEREK+MEFYER SGARMHAAY
Sbjct: 102 AQIIRVLFCEITRLLNHLVAVGCHALDVGAMSPFMWGFEEREKLMEFYERVSGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+PIGLLDDI+ FI F RLDE+E+MLT NR+W +R D+GIVSA DA+N+
Sbjct: 162 FRPGGVASDLPIGLLDDIFIFIKQFKIRLDEMEEMLTSNRIWKERLVDIGIVSAFDAINW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGV+LRGSG+ WDLRK PY+ Y F P+GT+G+ +I ++EMRQSL ++ Q
Sbjct: 222 GFSGVLLRGSGVPWDLRKSNPYEIYNELNFSYPVGTNGDCYDRYLIRIEEMRQSLSLISQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N + G ++T + K+++PS E+K G G TYTA EAPKGE
Sbjct: 282 CLNIINDGPIKTTNSKLTSPSLFELKNSMESLIHHFKYYTEGLIPGFGETYTATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+S+ T KPYRCKIKAPGF HL AL + G +AD+V II
Sbjct: 342 FGVYLISNNTEKPYRCKIKAPGFGHLQALNFMASGHMIADVVTII 386
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLA+EKL+NI+
Sbjct: 38 GEIIVNSDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHTYSLAIEKLMNIK 97
Query: 363 VPLRAKYIRVMFT 375
+P RA+ IRV+F
Sbjct: 98 IPRRAQIIRVLFC 110
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ ++N INFGPQHPAAHGVL L E+
Sbjct: 10 RNLKNFTINFGPQHPAAHGVLRLILEL 36
>gi|148284882|ref|YP_001248972.1| NADH dehydrogenase subunit D [Orientia tsutsugamushi str. Boryong]
gi|218534450|sp|A5CES2.1|NUOD_ORITB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146740321|emb|CAM80725.1| NADH dehydrogenase I chain D [Orientia tsutsugamushi str. Boryong]
Length = 396
Score = 336 bits (862), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 158/285 (55%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+E+TRILNH + + T ALDVGA TP W+FEEREK+MEFYER SG+R+HA Y
Sbjct: 100 AQYIRVMFSELTRILNHTLNIATQALDVGATTPLLWMFEEREKIMEFYERVSGSRLHANY 159
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GL+++I F F ++ ++E +LT+NR+W QRT D+GIVS + A+++
Sbjct: 160 FRPGGVAQDLPEGLIENIVDFCEQFPCKIADLETLLTDNRIWKQRTVDIGIVSKQQAMDW 219
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPYD Y N +FD+ IG +G+ +I ++EM QS++I++Q
Sbjct: 220 GFSGVMLRGSGIAWDLRKSQPYDQYANLDFDVAIGKNGDCYDRYLIRIEEMYQSIKIIKQ 279
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP GE++T D IS P RSE+K GY VP G Y AVEAPKGE
Sbjct: 280 CIQKMPVGEIKTQDPSISPPKRSEIKKSMEALINHFKLYSEGYNVPAGEVYAAVEAPKGE 339
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL SDGT++PYRC+IKAPGFAHL L+ + +G L+DI+ II
Sbjct: 340 FGVYLYSDGTNRPYRCRIKAPGFAHLQGLDFMARGHSLSDIITII 384
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYVS MC E ++LA+E LL E
Sbjct: 36 GEIVERADPHIGLLHRGTEKLIEYKTYLQAIPYFDRLDYVSPMCQEHAFALAIEHLLKCE 95
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRVMF+
Sbjct: 96 VPLRAQYIRVMFS 108
>gi|353327991|ref|ZP_08970318.1| NADH dehydrogenase subunit D [Wolbachia endosymbiont wVitB of
Nasonia vitripennis]
Length = 390
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 160/280 (57%), Positives = 207/280 (73%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ + + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 99 VLFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 158
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A DIP GL++DI FI F +D+V+++LTENR+W QRT + +S + AL++GFSG
Sbjct: 159 LAADIPEGLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGP 218
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +F IPIG +G+ ++ M E+RQS+ +V+Q I KM
Sbjct: 219 MLRAAGLAWDLRKSQPYEIYDQLDFGIPIGQNGDCYDRYLVRMAEIRQSVSLVKQCIEKM 278
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G ++T+D KIS P R+EMK GY VP G Y AVEAPKGEFGVY+
Sbjct: 279 PEGPIKTEDRKISPPPRAEMKESMEAMIHHFKLYSEGYHVPEGEAYVAVEAPKGEFGVYI 338
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG LADI AII
Sbjct: 339 VSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADIAAII 378
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 30 GEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCE 89
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 90 VPIRAKYLRVLFC 102
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
++ M++NFGPQHP AHGVL L E+
Sbjct: 4 LKTMMLNFGPQHPTAHGVLRLVLEM 28
>gi|194743140|ref|XP_001954058.1| GF16933 [Drosophila ananassae]
gi|190627095|gb|EDV42619.1| GF16933 [Drosophila ananassae]
Length = 519
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LFAEI R+ NH MAV + LD G +TP FWLFEEREK+ EF ERASGAR+HAAY
Sbjct: 223 ARYIRTLFAEIMRLTNHTMAVSSSILDCGGITPLFWLFEEREKLYEFSERASGARLHAAY 282
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA DIP+G DD+Y FI FS RLDEVED++T+NR+W R +G +SA DALN+
Sbjct: 283 FRPGGVASDIPLGFSDDLYAFIKQFSDRLDEVEDLVTDNRIWRMRNIGIGQISAHDALNW 342
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G +G +LR GIKWDLRK QPYD Y+ +F++ +G++G+ ++ M+EMR+SL I+ Q
Sbjct: 343 GCTGPVLRACGIKWDLRKQQPYDAYDEMDFEVMVGSNGDCYDRYLVRMREMRESLNIIYQ 402
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++KMP GE++ DD KI P R +MK G VPPG TYTAVE+PKGE
Sbjct: 403 CLDKMPEGEIKVDDRKICPPQRRDMKVGMEDLIHHFKHFSQGIVVPPGQTYTAVESPKGE 462
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+SDGTS+PYRCKI+ +AHLA + K+ FLAD+VAII
Sbjct: 463 FGVYLISDGTSRPYRCKIRPASYAHLAVMAKMAPSHFLADVVAII 507
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 61/72 (84%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
+ V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M NEQ Y+LAVEKLLNIEV
Sbjct: 160 ETVLAADPHIGLLHRGTEKLIEYKTYVQALPYFDRLDYVSCMANEQAYALAVEKLLNIEV 219
Query: 364 PLRAKYIRVMFT 375
P RA+YIR +F
Sbjct: 220 PRRARYIRTLFA 231
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VV+YP ++ K + PV++ R INFGP HPAAHGVL + E+
Sbjct: 106 VVMYPTGDQWKQRPKFSGKQFPPVDRTFRTKFINFGPAHPAAHGVLRMILEL 157
>gi|302854328|ref|XP_002958673.1| NADH:ubiquinone oxidoreductase 49 kDa subunit [Volvox carteri f.
nagariensis]
gi|300255998|gb|EFJ40276.1| NADH:ubiquinone oxidoreductase 49 kDa subunit [Volvox carteri f.
nagariensis]
Length = 469
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 159/301 (52%), Positives = 215/301 (71%), Gaps = 25/301 (8%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKM 88
+Q+ N+ + Q+ + +L++EITR+LNH++A+ HA+DVGA+TPF W FEEREK+
Sbjct: 162 EQLLNLAVPLRGQY-----IRVLYSEITRVLNHLLAITCHAMDVGALTPFLWAFEEREKL 216
Query: 89 MEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQ 148
EFYER SGARMHAAY R GGV+ D+PIGLL DIY + FS+RLDE+E++LT NR+W +
Sbjct: 217 FEFYERVSGARMHAAYFRVGGVSQDLPIGLLRDIYDWARQFSSRLDEIEELLTGNRIWKE 276
Query: 149 RTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN----- 203
RT DVG ++A+ A ++G SG +LR SGI WDLRK QPYD Y +F++PI HG+
Sbjct: 277 RTVDVGTITAQMAWDWGCSGPILRASGIDWDLRKTQPYDAYGRMQFNVPIAGHGDCYDRY 336
Query: 204 VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYP 248
++ ++EMR+SLRI+ Q +N+MP G ++ D K+ PSRS MK G+
Sbjct: 337 LVRLQEMRESLRIIYQCLNEMPDGLYKSPDAKVCPPSRSTMKQSMEALIHHFKLYTEGFH 396
Query: 249 VPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAI 308
VP G TY AVEAPKGEFGVYLVS G ++PYRCKI++PG+AHL ++ I KG+ LAD+V I
Sbjct: 397 VPAGETYRAVEAPKGEFGVYLVSRGGNRPYRCKIRSPGYAHLQMMDVISKGAMLADVVTI 456
Query: 309 I 309
I
Sbjct: 457 I 457
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMC E Y LA+E+LLN+
Sbjct: 109 GEIITRADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCMEHSYVLAIEQLLNLA 168
Query: 363 VPLRAKYIRVMFT 375
VPLR +YIRV+++
Sbjct: 169 VPLRGQYIRVLYS 181
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+ LVP ++ N +NFGPQHPAAHGVL L E ITR HI
Sbjct: 76 EALVPA--KVNNFTLNFGPQHPAAHGVLRLVLEMNGEIITRADPHI 119
>gi|288958986|ref|YP_003449327.1| NADH dehydrogenase I subunit D [Azospirillum sp. B510]
gi|288911294|dbj|BAI72783.1| NADH dehydrogenase I chain D [Azospirillum sp. B510]
Length = 419
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 164/285 (57%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNHI+++ T ALDVGA+TP W FEERE +MEFYER SGAR+HA Y
Sbjct: 123 AQYIRVLFSEITRILNHILSITTGALDVGALTPALWGFEEREILMEFYERVSGARLHANY 182
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA DIP GLLDDI+ F F +D++E +LTENR++ QRT D+GIV+ E AL++
Sbjct: 183 FRPGGVAWDIPDGLLDDIWAFTERFPKFMDDLESLLTENRIFKQRTVDIGIVTKEQALDW 242
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
F+G MLRGSG+ WDLRK QPY+ Y+ EFD+P+G G+ ++ M+EM+QSLRI+ Q
Sbjct: 243 AFTGPMLRGSGVAWDLRKSQPYEVYDRMEFDVPVGLTGDCWARYLVRMEEMKQSLRIIRQ 302
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+MP G + D K+S P R EMK G+ VP G TYTA+EAPKGE
Sbjct: 303 CCKEMPAGPYKVQDRKVSPPPRGEMKRSMEALIHHFKLFTEGFHVPAGETYTAIEAPKGE 362
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGT+KPYRCKI+APGFAHL L+ + KG LAD VA I
Sbjct: 363 FGVYLVSDGTNKPYRCKIRAPGFAHLQGLDFMSKGHMLADAVANI 407
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYVS MC E Y L +E LL I+
Sbjct: 59 GEVVERCDPHIGLLHRGTEKLIEYKTYVQAVPYFDRLDYVSPMCMEHAYVLGIENLLQIK 118
Query: 363 VPLRAKYIRVMFT 375
PLRA+YIRV+F+
Sbjct: 119 APLRAQYIRVLFS 131
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ QI+ +NFGPQHPAAHGVL L E+
Sbjct: 30 KTQIKPYTMNFGPQHPAAHGVLRLVMELN 58
>gi|371907974|emb|CAP18140.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
debile]
Length = 349
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 160/265 (60%), Positives = 201/265 (75%), Gaps = 22/265 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TP W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 87 IRVIFAEITRILNHLLAVGCHAIDVGAITPILWSFEEREKLIEFYERVSGARIHAAYFRP 146
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+V+A DA+ +GFS
Sbjct: 147 GGVSLDLPLGLIDDIYVFIIQFSTRLDELEELLTSNRIWKQRLVDIGLVTASDAIAHGFS 206
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ +I ++E+RQSL I+ Q +N
Sbjct: 207 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLIRLEEIRQSLSIIHQCLN 266
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 267 NIPQGPVR--DENISPPSRTNLKSSIESLIHHFKLYTEGVVVPSGETYTATEAPKGEFGV 324
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAA 292
YLVS+GT++PYRCKIKAPGF HL A
Sbjct: 325 YLVSNGTNRPYRCKIKAPGFNHLQA 349
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL +
Sbjct: 20 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLQSK 79
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 80 VPIRSIYIRVIFA 92
>gi|11466310|ref|NP_051138.1| NADH dehydrogenase subunit 7 [Cafeteria roenbergensis]
gi|11134161|sp|Q9TAJ7.1|NDUS2_CAFRO RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|6180092|gb|AAF05789.1|AF193903_12 NADH dehydrogenase subunit 7 [Cafeteria roenbergensis]
Length = 398
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 158/285 (55%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++A+G H++DVGAMTP W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQWIRVLFSEITRILNHLLAIGCHSMDVGAMTPLLWGFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P G ++D+Y FI FS RLDE+E++LT NR+W QR +VGIV+A+ A+
Sbjct: 162 IRPGGVAQDLPSGFVEDVYSFILDFSVRLDEIEELLTNNRIWKQRLVNVGIVTAKQAIQN 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGV+LR +GI WDLR+ QPY+ Y+ F IP+GT G+ +I M+EMRQSLRI+
Sbjct: 222 GFSGVLLRSTGIPWDLRRSQPYEIYDKVPFRIPVGTRGDCYDRYLIRMQEMRQSLRIMMA 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ +PGG +++DD K P R EMK G+ VP G TY AVEAPKGE
Sbjct: 282 CLKYLPGGSIKSDDKKFVPPLRWEMKNSMESVIHHFKYFTEGFKVPAGQTYAAVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GV+L+SDG+++P+RCKIKAPGF HL L ++ K +AD+V II
Sbjct: 342 MGVFLISDGSNQPFRCKIKAPGFFHLQNLPEMTKHHMIADVVTII 386
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 55/66 (83%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE + Y QALPYFDRLDYVSMM E YSLAVE+L I +P RA++
Sbjct: 45 DPHIGLLHRGTEKLIENRNYLQALPYFDRLDYVSMMVQEHAYSLAVERLYGINIPQRAQW 104
Query: 370 IRVMFT 375
IRV+F+
Sbjct: 105 IRVLFS 110
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E +I++ +NFGPQHPAAHGVL L E+
Sbjct: 9 ETEIKDFTLNFGPQHPAAHGVLRLILELN 37
>gi|374292609|ref|YP_005039644.1| NADH-quinone oxidoreductase, subunit D [Azospirillum lipoferum 4B]
gi|357424548|emb|CBS87427.1| NADH-quinone oxidoreductase, subunit D [Azospirillum lipoferum 4B]
Length = 419
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNHI+++ T ALDVGA+TP W FEERE +MEFYER SGAR+HA Y
Sbjct: 123 AQYIRVLFSEITRILNHILSITTGALDVGAITPALWGFEEREILMEFYERVSGARLHANY 182
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLLDDI+ F + +D++E +LTENR++ QRT D+GIV+ E+AL++
Sbjct: 183 FRPGGVAWDLPDGLLDDIWAFTERYPKFMDDLESLLTENRIFKQRTVDIGIVTKEEALDW 242
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
F+G MLRGSG+ WDLRK QPY+ Y+ EFD+P+G G+ ++ M+EMRQSLRI+ Q
Sbjct: 243 AFTGPMLRGSGVAWDLRKSQPYEVYDRMEFDVPVGVTGDCWARYLVRMEEMRQSLRIIRQ 302
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+MP G + +D K+S P R EMK G+ VP G TYTA+EAPKGE
Sbjct: 303 CCKEMPAGPYKIEDRKVSPPPRGEMKRSMEALIHHFKLFTEGFHVPAGETYTAIEAPKGE 362
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGT+KPYRCKI+APGFAHL L+ + KG LAD VA I
Sbjct: 363 FGVYLVSDGTNKPYRCKIRAPGFAHLQGLDFMSKGHMLADAVANI 407
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYVS MC E Y L +E LL I+
Sbjct: 59 GEVVERCDPHIGLLHRGTEKLIEYKTYVQAVPYFDRLDYVSPMCMEHAYVLGIENLLQIK 118
Query: 363 VPLRAKYIRVMFT 375
PLRA+YIRV+F+
Sbjct: 119 APLRAQYIRVLFS 131
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ QI+ +NFGPQHPAAHGVL L E+
Sbjct: 29 TKTQIKPYTMNFGPQHPAAHGVLRLVMELN 58
>gi|269958790|ref|YP_003328578.1| NADH dehydrogenase subunit D [Anaplasma centrale str. Israel]
gi|269848620|gb|ACZ49264.1| NADH dehydrogenase subunit D [Anaplasma centrale str. Israel]
Length = 395
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 153/287 (53%), Positives = 205/287 (71%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + ++F E+TR+LNH++ V + ALD GA TP W+FEERE+++ FYERASGAR HA
Sbjct: 97 PRAKYIRVIFCELTRVLNHLLNVSSQALDTGATTPLLWMFEERERLLSFYERASGARFHA 156
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGG+A D+P GLLDDI+ F +F LD+V+ +LTEN +W QR D+G+VS AL
Sbjct: 157 AYIRPGGIAADVPDGLLDDIHAFTESFPKLLDDVDGLLTENSIWKQRNVDIGVVSKAQAL 216
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GFSG MLR GI WDLRK QPY+ YE +F +P+G++G+ ++ M EMR+S+ I+
Sbjct: 217 DWGFSGPMLRACGIPWDLRKSQPYEIYETLDFKVPVGSNGDCYDRYLVRMAEMRESISII 276
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +N +P G V+TDD KI+ P R E+K GY VP G Y AVEAPK
Sbjct: 277 RQCLNGIPEGPVKTDDRKIAPPRREELKYSMEALIHHFKLFSEGYKVPEGEAYVAVEAPK 336
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVY+VSDGT++PYRC+I+APGFAHL A++ + +G LAD+ AII
Sbjct: 337 GEFGVYIVSDGTNRPYRCRIRAPGFAHLQAIDAMARGHMLADLTAII 383
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E YSL VEKLL
Sbjct: 35 GEVVERVDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCV 94
Query: 363 VPLRAKYIRVMFT 375
VP RAKYIRV+F
Sbjct: 95 VPPRAKYIRVIFC 107
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
QI+ M +NFGPQHPAAHGV+ L E++
Sbjct: 7 SQIKPMTLNFGPQHPAAHGVMRLVLEMS 34
>gi|56416798|ref|YP_153872.1| NADH dehydrogenase subunit D [Anaplasma marginale str. St. Maries]
gi|254995000|ref|ZP_05277190.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Mississippi]
gi|81359082|sp|Q5PAR3.1|NUOD_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56388030|gb|AAV86617.1| NADH dehydrogenase chain D [Anaplasma marginale str. St. Maries]
Length = 398
Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 153/287 (53%), Positives = 205/287 (71%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + ++F E+TR+LNH++ V + ALD GA TP W+FEERE+++ FYERASGAR HA
Sbjct: 100 PRAKYIRVIFCELTRVLNHLLNVSSQALDTGATTPLLWMFEERERLLSFYERASGARFHA 159
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGG+A D+P GLLDDI+ F +F LD+V+ +LTEN +W QR D+G+VS AL
Sbjct: 160 AYIRPGGIAADVPDGLLDDIHAFTESFPKLLDDVDGLLTENSIWKQRNVDIGVVSKAQAL 219
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GFSG MLR GI WDLRK QPY+ YE +F +P+G++G+ ++ M EMR+S+ I+
Sbjct: 220 DWGFSGPMLRACGIPWDLRKSQPYEIYETLDFKVPVGSNGDCYDRYLVRMAEMRESISII 279
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +N +P G V+TDD KI+ P R E+K GY VP G Y AVEAPK
Sbjct: 280 RQCLNGIPEGPVKTDDRKIAPPRREELKYSMEALIHHFKLFSEGYKVPEGEAYVAVEAPK 339
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVY+VSDGT++PYRC+I+APGFAHL A++ + +G LAD+ AII
Sbjct: 340 GEFGVYIVSDGTNRPYRCRIRAPGFAHLQAIDAMARGHMLADLTAII 386
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E YSL VEKLL
Sbjct: 38 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCV 97
Query: 363 VPLRAKYIRVMFT 375
VP RAKYIRV+F
Sbjct: 98 VPPRAKYIRVIFC 110
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I+ M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 10 SRIKPMTLNFGPQHPAAHGVMRLILEMSGEVIERIDPHI 48
>gi|371907978|emb|CAP18142.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
montanum]
Length = 348
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/263 (60%), Positives = 201/263 (76%), Gaps = 22/263 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TP W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 87 IRVIFAEITRILNHLLAVGCHAIDVGAITPILWSFEEREKLIEFYERVSGARIHAAYFRP 146
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+VSA DA+ +GFS
Sbjct: 147 GGVSLDLPLGLIDDIYIFIIQFSTRLDELEELLTSNRIWKQRFVDIGVVSAYDAIAHGFS 206
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ +I ++E+RQSL I+ Q +N
Sbjct: 207 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLIRLEEIRQSLSIIHQCLN 266
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G+ VP G TYTA EAPKGEFGV
Sbjct: 267 NIPQGPVR--DENISPPSRTNLKSSIESLIHHFKLYTEGHVVPSGETYTATEAPKGEFGV 324
Query: 268 YLVSDGTSKPYRCKIKAPGFAHL 290
YLVS+GT++PYRCKIK+PGF HL
Sbjct: 325 YLVSNGTNRPYRCKIKSPGFNHL 347
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL +
Sbjct: 20 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLQSK 79
Query: 363 VPLRAKYIRVMFT 375
VP+R+ YIRV+F
Sbjct: 80 VPIRSIYIRVIFA 92
>gi|15604222|ref|NP_220738.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. Madrid E]
gi|386082199|ref|YP_005998776.1| NADH dehydrogenase I subunit D [Rickettsia prowazekii str. Rp22]
gi|6647680|sp|Q9ZDH4.1|NUOD_RICPR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|3860914|emb|CAA14814.1| NADH DEHYDROGENASE I CHAIN D (nuoD) [Rickettsia prowazekii str.
Madrid E]
gi|292571963|gb|ADE29878.1| NADH dehydrogenase I chain D [Rickettsia prowazekii str. Rp22]
Length = 389
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 156/285 (54%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 93 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 152
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P LL+DI FI F ++L+++E++L ENRLW QR D+G+VS +DA+++
Sbjct: 153 FRPGGVAEDLPENLLEDINKFIEQFPSKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDW 212
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++PIG +G+ ++ + EM +S++I++Q
Sbjct: 213 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQ 272
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G+V+TDD K++ P+R +MK GY VP G TY AVEAPKGE
Sbjct: 273 CIVKMPKGQVKTDDPKLTPPTRGKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGE 332
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G +KPYRC+IKAPGFAHL L + KG +AD++ II
Sbjct: 333 FGVYLYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLIADVITII 377
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL
Sbjct: 29 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECS 88
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 89 VPRRAQFIRVLFS 101
>gi|195111610|ref|XP_002000371.1| GI10189 [Drosophila mojavensis]
gi|193916965|gb|EDW15832.1| GI10189 [Drosophila mojavensis]
Length = 478
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 154/287 (53%), Positives = 206/287 (71%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L E+ R+ NH MA+GT LD GA+TP FWLFEEREK+ EF ER SGAR+HA
Sbjct: 180 PRAKYIRTLCGELMRLTNHTMAIGTSVLDCGAITPLFWLFEEREKLYEFSERLSGARLHA 239
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGGVA+D+P+G D++ F+ F+ RLDEVED++T+NR+W R D+G +SA +AL
Sbjct: 240 AYIRPGGVAMDMPLGYGKDLHEFLKAFTQRLDEVEDVVTDNRIWRMRNIDIGRISAHEAL 299
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYG +G +LR +G+KWDLRK QPYD Y +F++PIG+ G+ ++ M+EMR+S I+
Sbjct: 300 NYGCTGPVLRATGVKWDLRKQQPYDAYAAMKFNVPIGSQGDCYDRYLVRMREMRESCSIM 359
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +++MP G ++ DD K++ P RS+MK GY VPPGATYTA+E+PK
Sbjct: 360 LQCLDQMPPGNIKVDDRKVAPPQRSKMKTGMEDLIHHFKFFSQGYNVPPGATYTAIESPK 419
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKI+A + HLA L K+ LAD+VAII
Sbjct: 420 GEFGVYLVSDGSSRPYRCKIRAASYTHLALLSKLSPTYLLADVVAII 466
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 79/128 (61%), Gaps = 8/128 (6%)
Query: 247 YPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFL-ADI 305
YPV G + PKG+ V + +R K G AH AA + L +
Sbjct: 68 YPV--GDEWKKPPNPKGK-----VVPPMDRTFRSKFVNFGPAHPAAHGVLRMMLELDNET 120
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIE+KTYTQA+PYF R DYVS M EQ Y+LAVEKLLNIEVP
Sbjct: 121 VLSADPHIGLLHRGTEKLIEHKTYTQAVPYFARTDYVSCMSCEQAYALAVEKLLNIEVPP 180
Query: 366 RAKYIRVM 373
RAKYIR +
Sbjct: 181 RAKYIRTL 188
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 4 VVLYPDKEETKWKIINWNDNLVP-VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+V YP +E K K N +VP +++ R+ +NFGP HPAAHGVL + E+
Sbjct: 65 IVFYPVGDEWK-KPPNPKGKVVPPMDRTFRSKFVNFGPAHPAAHGVLRMMLEL 116
>gi|383487192|ref|YP_005404872.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. GvV257]
gi|383487769|ref|YP_005405448.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
Chernikova]
gi|383488616|ref|YP_005406294.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
Katsinyian]
gi|383489456|ref|YP_005407133.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. Dachau]
gi|383499594|ref|YP_005412955.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500431|ref|YP_005413791.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. RpGvF24]
gi|380757557|gb|AFE52794.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. GvV257]
gi|380758128|gb|AFE53364.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. RpGvF24]
gi|380760648|gb|AFE49170.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
Chernikova]
gi|380761495|gb|AFE50016.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
Katsinyian]
gi|380762340|gb|AFE50860.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380763179|gb|AFE51698.1| NADH dehydrogenase subunit D [Rickettsia prowazekii str. Dachau]
Length = 363
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/285 (54%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 67 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 126
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P LL+DI FI F ++L+++E++L ENRLW QR D+G+VS +DA+++
Sbjct: 127 FRPGGVAEDLPENLLEDINKFIEQFPSKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDW 186
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++PIG +G+ ++ + EM +S++I++Q
Sbjct: 187 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQ 246
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G+V+TDD K++ P+R +MK GY VP G TY AVEAPKGE
Sbjct: 247 CIVKMPKGQVKTDDPKLTPPTRGKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGE 306
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G +KPYRC+IKAPGFAHL L + KG +AD++ II
Sbjct: 307 FGVYLYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLIADVITII 351
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL
Sbjct: 3 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECS 62
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 63 VPRRAQFIRVLFS 75
>gi|449680955|ref|XP_002167534.2| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like, partial [Hydra magnipapillata]
Length = 254
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 160/242 (66%), Positives = 191/242 (78%), Gaps = 20/242 (8%)
Query: 88 MMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWI 147
+MEFYERASGAR+HAAYVRPGGVALDIPIGLLDDI+HF+S F R+DE+E+MLT NR+W
Sbjct: 1 LMEFYERASGARLHAAYVRPGGVALDIPIGLLDDIWHFMSKFGQRIDELEEMLTHNRIWK 60
Query: 148 QRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN---- 203
QR D+G+VS E+AL+YG SGVMLRGSG KWDLRK QPYD Y+ EFD+PIG +G+
Sbjct: 61 QRLVDIGVVSTENALSYGMSGVMLRGSGFKWDLRKSQPYDAYDKVEFDVPIGKNGDCYDR 120
Query: 204 -VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GY 247
+ ++EMRQS+RIVEQ +NKMP GEVR DD KIS P R+EMK GY
Sbjct: 121 YLCRVEEMRQSVRIVEQCLNKMPPGEVRIDDAKISPPKRAEMKESMEALIHHFKLYTEGY 180
Query: 248 PVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA 307
VPPG TYTA+EAPKGE GVYLVSDG++KPYRCKI+APGF HLA+++ + KG LAD+VA
Sbjct: 181 SVPPGETYTAIEAPKGEMGVYLVSDGSNKPYRCKIRAPGFYHLASIDYMSKGHMLADVVA 240
Query: 308 II 309
II
Sbjct: 241 II 242
>gi|67458956|ref|YP_246580.1| NADH dehydrogenase subunit D [Rickettsia felis URRWXCal2]
gi|75536606|sp|Q4UM08.1|NUOD_RICFE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|67004489|gb|AAY61415.1| NADH dehydrogenase I chain D [Rickettsia felis URRWXCal2]
Length = 391
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVAEDLPDGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEIDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ I KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFISKGHLMADVITII 379
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|371908006|emb|CAP18821.1| NADH dehydrogenase subunit 7, partial (mitochondrion)
[Chlorellidium sp. SAG 5.90]
Length = 314
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/269 (59%), Positives = 198/269 (73%), Gaps = 22/269 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 47 IRVLFAEITRILNHLLAVGCHAIDVGAMTPFLWAFEEREKLIEFYERVSGARIHAAYFRP 106
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+PIGLLDDI+ FI FS RLDE+E++LT NR+W R D+G+V A+ AL YGFS
Sbjct: 107 GGVSIDLPIGLLDDIFIFIKQFSRRLDEIEEILTNNRIWKLRLVDIGVVDAKSALAYGFS 166
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSG++WDLR+ QPYD Y + FDIP+GT G+ + + E+R+SLRI+ Q I+
Sbjct: 167 GVMLRGSGLQWDLRQAQPYDVYSSINFDIPVGTKGDSYDRYLCRLNEIRESLRIIHQCID 226
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
K+P GEVR D RS +K G VP G Y A EAPKGEFGV
Sbjct: 227 KIPYGEVR--DENFGAQKRSVIKSSIEALIHHFKFYSEGPTVPSGEIYLATEAPKGEFGV 284
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
YLVS+GT+K YRCKIKAPGF HL AL+ +
Sbjct: 285 YLVSNGTNKAYRCKIKAPGFNHLQALDAM 313
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 39/52 (75%)
Query: 324 IEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFT 375
IE K + QALPYFDRLDYVS++C E Y+LAVE L +VP RA YIRV+F
Sbjct: 1 IENKNFLQALPYFDRLDYVSIICQEHTYALAVEALTKTKVPYRALYIRVLFA 52
>gi|383501849|ref|YP_005415208.1| NADH dehydrogenase subunit D [Rickettsia australis str. Cutlack]
gi|378932860|gb|AFC71365.1| NADH dehydrogenase subunit D [Rickettsia australis str. Cutlack]
Length = 391
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 156/285 (54%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A V +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFVRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI+ F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVAEDLPDGLLEDIDKFINQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++PIG +G+ + M E+ +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFEVPIGKNGDCYDRYFVRMLEIYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPTGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGVNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA+++RV+F+
Sbjct: 91 VPRRAQFVRVLFS 103
>gi|195157528|ref|XP_002019648.1| GL12099 [Drosophila persimilis]
gi|194116239|gb|EDW38282.1| GL12099 [Drosophila persimilis]
Length = 495
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 201/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +FAEI R+ NH MA+ + LD G +TP FWLFEEREK+ EF ERASGAR+HAAY
Sbjct: 199 ARFIRTMFAEIMRLTNHTMAISSSILDCGGITPLFWLFEEREKLYEFSERASGARLHAAY 258
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+G +D+YHFIS F RLDEVED+ TENR+W R +G +SA DALNY
Sbjct: 259 IRPGGVASDLPLGFCEDLYHFISQFKDRLDEVEDLATENRIWRMRNIGIGCISAHDALNY 318
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G +G +LR GIKWDLRK QPYD Y+ +F++ +GT+G+ ++ M+EMR+SL I+ Q
Sbjct: 319 GCTGPVLRACGIKWDLRKQQPYDAYDEIDFNVVVGTNGDCYDRYLVRMREMRESLDIILQ 378
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ MP GE++ DD KI+ P R MK G VPPG TYTAVE+PKGE
Sbjct: 379 CLELMPPGEIKVDDRKITPPQRRNMKTGMEDLIHHFKHFSQGIFVPPGQTYTAVESPKGE 438
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+++PYRCKI+ +AHLA + K+ LAD+VAII
Sbjct: 439 FGVYLVSDGSTRPYRCKIRPASYAHLALMAKLAPNHLLADVVAII 483
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 61/71 (85%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
+ V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M NEQ Y+LAVEKLLNIEV
Sbjct: 136 ETVMSADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSCMANEQAYALAVEKLLNIEV 195
Query: 364 PLRAKYIRVMF 374
P RA++IR MF
Sbjct: 196 PRRARFIRTMF 206
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VV+YP ++ + PV++ R INFGP HPAAHGVL + E+
Sbjct: 82 VVMYPTGDQWHQRPPATGKKPPPVDRTFRTKFINFGPAHPAAHGVLRMILEL 133
>gi|195037999|ref|XP_001990448.1| GH18233 [Drosophila grimshawi]
gi|193894644|gb|EDV93510.1| GH18233 [Drosophila grimshawi]
Length = 529
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + L AE+ R+ NH MAV T LD GA+TP FWLFEEREK+ EF ER SGAR+HAAY
Sbjct: 233 AKYIRTLCAELMRLTNHTMAVATSVLDCGAITPLFWLFEEREKLYEFSERLSGARLHAAY 292
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+G D+Y+FI F RLDEVED++T+NR+W R +G +SA DALN+
Sbjct: 293 IRPGGVAQDMPLGFGHDLYNFIEQFKERLDEVEDVVTDNRIWRMRNIGIGTISAHDALNF 352
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G +G +LR +G+KWDLRK QPYD Y + +FD+ IG+ G+ ++ ++EMR+S RI++Q
Sbjct: 353 GCTGPVLRATGVKWDLRKQQPYDAYADMDFDVVIGSQGDCYDRYLVRVREMRESCRIIQQ 412
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N MP G V+ DD KI P R +MK GY VPPGATYTA+E+PKGE
Sbjct: 413 CLNCMPAGHVKVDDKKIMPPQRHKMKTGMEDLIHHFKHFSQGYSVPPGATYTAIESPKGE 472
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+S+PYRCKI+ +AHLA + K+ LADIVAII
Sbjct: 473 FGVYLVSDGSSRPYRCKIRPASYAHLALMSKLAPMMLLADIVAII 517
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 60/70 (85%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
+ V DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS M EQ Y+LAVEKLLNIE+
Sbjct: 170 ETVLSADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSCMACEQAYALAVEKLLNIEI 229
Query: 364 PLRAKYIRVM 373
P RAKYIR +
Sbjct: 230 PARAKYIRTL 239
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VL+P +E K + + P ++ R +NFGP HPAAHGVL + E+
Sbjct: 117 VLWPIGDEWKQRPNPSSRYFPPQDRTFRTKFVNFGPAHPAAHGVLRMILEL 167
>gi|51473548|ref|YP_067305.1| NADH dehydrogenase subunit D [Rickettsia typhi str. Wilmington]
gi|51459860|gb|AAU03823.1| NADH dehydrogenase (ubiquinone) subunit D [Rickettsia typhi str.
Wilmington]
Length = 404
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMHA Y
Sbjct: 108 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHANY 167
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P LL+DI FI F ++L+++E++L ENRLW QR D+G+VS +DA+++
Sbjct: 168 FRPGGVAEDLPEKLLEDINKFIEQFPSKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDW 227
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++P+G +G+ ++ + EM +S++I++Q
Sbjct: 228 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFEVPVGKNGDCYDRYLVRILEMYESIKIIKQ 287
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G+V+TD+ K++ P+R +MK GY VP G TY AVEAPKGE
Sbjct: 288 CIAKMPKGQVKTDNPKLTPPTREKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGE 347
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G +KPYRC+IKAPGFAHL L + KG ++D++ II
Sbjct: 348 FGVYLYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLISDVITII 392
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL
Sbjct: 44 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECS 103
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 104 VPRRAQFIRVLFS 116
>gi|347800998|gb|AEP20703.1| NADH dehydrogenase subunit 7 (mitochondrion) [endosymbiont of
Durinskia baltica]
Length = 398
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 164/286 (57%), Positives = 204/286 (71%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFW-LFEEREKMMEFYERASGARMHAA 103
A + +LFAEITRILNH++AVG HA+DVGAMTP +FEEREK+MEFYER SGARMHAA
Sbjct: 101 AQYIRVLFAEITRILNHLLAVGCHAMDVGAMTPMLMGVFEEREKLMEFYERVSGARMHAA 160
Query: 104 YVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
Y RPGGV D+P GLL DIY F F RL E+E+MLTENR+W QR D+G+VS E A N
Sbjct: 161 YFRPGGVHTDLPKGLLTDIYLFKEQFKLRLLEIEEMLTENRIWKQRLVDIGVVSLEQAQN 220
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSGVMLRGSGI+WDLRK QPY+ Y FDI G +G+ +I + EM+QS+ I+E
Sbjct: 221 WGFSGVMLRGSGIEWDLRKSQPYEVYSELNFDILAGANGDCYDRYLIRIFEMKQSILIIE 280
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q ++ +P G ++TDD KI+ PSR ++K G +P TYT EAPKG
Sbjct: 281 QCLDNIPLGPIKTDDNKITPPSRFDIKQSMESLIHHFKFYTSGINIPANETYTGTEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+S+ ++KPYRCKIKAPGFAHL L+ + G +AD+V II
Sbjct: 341 EFGVYLISNNSNKPYRCKIKAPGFAHLQGLDMMSSGHMIADVVTII 386
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMM E Y LA+EKLLN
Sbjct: 37 GEVVERAEPHIGLLHRGTEKLIEYKNYFQALPYFDRLDYVSMMAQEHTYCLAIEKLLNCS 96
Query: 363 VPLRAKYIRVMFT 375
+P RA+YIRV+F
Sbjct: 97 IPRRAQYIRVLFA 109
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+I+N +NFGPQHPAAHGVL L E+T
Sbjct: 9 KEIKNFTVNFGPQHPAAHGVLRLVLELT 36
>gi|426401087|ref|YP_007020059.1| NADH dehydrogenase (ubiquinone) iron-sulfur protein 2 [Candidatus
Endolissoclinum patella L2]
gi|425857755|gb|AFX98791.1| NADH dehydrogenase (ubiquinone) iron-sulfur protein 2 [Candidatus
Endolissoclinum patella L2]
Length = 392
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 161/285 (56%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+AEI R+LNH++ + T ALDVGAMTP W FEEREK+MEFYERASGAR+HAA+
Sbjct: 96 AQYIRVLYAEIGRLLNHLLNITTFALDVGAMTPMLWGFEEREKLMEFYERASGARLHAAF 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P LL+DI + F ++++E++LT NR++ QRT D+G+V+ E AL+
Sbjct: 156 FRPGGVHQDLPTSLLEDIQSWADNFPKFINDLENLLTNNRIFKQRTVDIGVVTYEQALDL 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSG +LRG+G WDLR QPYD YE+F+FDIPIG G+ ++ ++EMRQSL+I+ Q
Sbjct: 216 SFSGPVLRGTGAAWDLRTAQPYDSYEDFDFDIPIGKTGDCYARYLVRIEEMRQSLKIIHQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+ D K++ P R+EMK GY VP G TYTAVEAPKGE
Sbjct: 276 VIAKMPDGPVKALDHKVTPPKRNEMKSSMEALIHHFKLYTEGYRVPAGETYTAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+L+SDGT+KPYRCKI+APGFA LAAL+ +G+G LAD VAII
Sbjct: 336 FGVFLISDGTNKPYRCKIRAPGFAFLAALDFLGRGHMLADTVAII 380
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYV+ M E Y+LAVEKLL +E
Sbjct: 32 GEVVERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVAPMNQEHAYALAVEKLLELE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV++
Sbjct: 92 VPKRAQYIRVLYA 104
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E QI+ + INFGPQHPAAHGVL L E+
Sbjct: 3 ELQIKPITINFGPQHPAAHGVLRLVLEM 30
>gi|383752323|ref|YP_005427423.1| NADH dehydrogenase subunit D [Rickettsia typhi str. TH1527]
gi|383843160|ref|YP_005423663.1| NADH dehydrogenase subunit D [Rickettsia typhi str. B9991CWPP]
gi|147705294|sp|Q68X19.2|NUOD_RICTY RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|380758966|gb|AFE54201.1| NADH dehydrogenase subunit D [Rickettsia typhi str. TH1527]
gi|380759807|gb|AFE55041.1| NADH dehydrogenase subunit D [Rickettsia typhi str. B9991CWPP]
Length = 389
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMHA Y
Sbjct: 93 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHANY 152
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P LL+DI FI F ++L+++E++L ENRLW QR D+G+VS +DA+++
Sbjct: 153 FRPGGVAEDLPEKLLEDINKFIEQFPSKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDW 212
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++P+G +G+ ++ + EM +S++I++Q
Sbjct: 213 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFEVPVGKNGDCYDRYLVRILEMYESIKIIKQ 272
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G+V+TD+ K++ P+R +MK GY VP G TY AVEAPKGE
Sbjct: 273 CIAKMPKGQVKTDNPKLTPPTREKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGE 332
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G +KPYRC+IKAPGFAHL L + KG ++D++ II
Sbjct: 333 FGVYLYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLISDVITII 377
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL
Sbjct: 29 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECS 88
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 89 VPRRAQFIRVLFS 101
>gi|222475162|ref|YP_002563578.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Florida]
gi|255003146|ref|ZP_05278110.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Puerto Rico]
gi|255004272|ref|ZP_05279073.1| NADH dehydrogenase subunit D [Anaplasma marginale str. Virginia]
gi|222419299|gb|ACM49322.1| NADH dehydrogenase chain D (nuoD) [Anaplasma marginale str.
Florida]
Length = 398
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 152/287 (52%), Positives = 204/287 (71%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + ++F E+TR+LNH++ V + ALD GA TP W+FEERE+++ FYERASGAR HA
Sbjct: 100 PRAKYIRVIFCELTRVLNHLLNVSSQALDTGATTPLLWMFEERERLLSFYERASGARFHA 159
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGG+A D+P GLLDDI+ F +F LD+V+ +LTEN +W QR D+G+VS AL
Sbjct: 160 AYIRPGGIAADVPDGLLDDIHAFTESFPKLLDDVDGLLTENSIWKQRNVDIGVVSKAQAL 219
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GFSG MLR GI WDLRK QPY+ YE +F +P+G++G+ ++ M EMR+S+ I+
Sbjct: 220 DWGFSGPMLRACGIPWDLRKSQPYEIYETLDFKVPVGSNGDCYDRYLVRMAEMRESISII 279
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +N +P G V+TDD KI+ P R E+K GY V G Y AVEAPK
Sbjct: 280 RQCLNGIPEGPVKTDDRKIAPPRREELKYSMEALIHHFKLFSEGYKVAKGEAYVAVEAPK 339
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVY+VSDGT++PYRC+I+APGFAHL A++ + +G LAD+ AII
Sbjct: 340 GEFGVYIVSDGTNRPYRCRIRAPGFAHLQAIDAMARGHMLADLTAII 386
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E YSL VEKLL
Sbjct: 38 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCV 97
Query: 363 VPLRAKYIRVMFT 375
VP RAKYIRV+F
Sbjct: 98 VPPRAKYIRVIFC 110
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I+ M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 10 SRIKPMTLNFGPQHPAAHGVMRLILEMSGEVIERIDPHI 48
>gi|91205209|ref|YP_537564.1| NADH dehydrogenase subunit D [Rickettsia bellii RML369-C]
gi|91068753|gb|ABE04475.1| NADH dehydrogenase I chain D [Rickettsia bellii RML369-C]
Length = 395
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 156/285 (54%), Positives = 206/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALDVGA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 99 AQFIRVLFSELTRILNHTLNIGSQALDVGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 158
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E++L ENRLW QR D+G+VS ++A+++
Sbjct: 159 FRPGGVAEDLPDGLLEDIDKFIQQFPPKLQDIENLLNENRLWKQRLVDIGVVSQKEAMDW 218
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y +F++PIG +G+ ++ M EM +S++I++Q
Sbjct: 219 GFSGPMLRGSGIAWDLRKSNPYDVYAEMDFEVPIGKNGDCYDRYLVRMLEMYESVKIIKQ 278
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G Y AVEAPKGE
Sbjct: 279 CIEKMPQGPVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGEIYKAVEAPKGE 338
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 339 FGVYLYSTGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 383
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LA E LL E
Sbjct: 35 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAAESLLECE 94
Query: 363 VPLRAKYIRVMFT 375
+P RA++IRV+F+
Sbjct: 95 IPRRAQFIRVLFS 107
>gi|402703728|ref|ZP_10851707.1| NADH dehydrogenase subunit D [Rickettsia helvetica C9P9]
Length = 395
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 99 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 158
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 159 FRPGGVAEDLPDGLLEDIDKFIEQFPPKLQDIESLLNENRLWKQRLVDIGVVSQKEAMDW 218
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++PIG +G+ + M EM +S++I++Q
Sbjct: 219 GFSGPMLRGSGIVWDLRKSNPYDVYDEIDFEVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 278
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R+ MK GY VP G TY AVEAPKGE
Sbjct: 279 CIEKMPKGAVKTDDPKLTPPTRATMKESMEAMIHHFKLYTEGYNVPAGETYKAVEAPKGE 338
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG+YL S G ++PYRC+IKAPGFAHL L+ + KG ++D++ II
Sbjct: 339 FGIYLYSTGNNRPYRCRIKAPGFAHLQGLDFMSKGHLMSDVITII 383
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL +
Sbjct: 35 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECK 94
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 95 VPRRAQFIRVLFS 107
>gi|383483260|ref|YP_005392174.1| NADH dehydrogenase subunit D [Rickettsia montanensis str. OSU
85-930]
gi|378935614|gb|AFC74115.1| NADH dehydrogenase subunit D [Rickettsia montanensis str. OSU
85-930]
Length = 391
Score = 330 bits (846), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 204/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMINHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V PHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNAAPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|157827453|ref|YP_001496517.1| NADH dehydrogenase subunit D [Rickettsia bellii OSU 85-389]
gi|147705275|sp|Q1RJI9.2|NUOD_RICBR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534456|sp|A8GX80.1|NUOD_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|157802757|gb|ABV79480.1| NADH dehydrogenase subunit D [Rickettsia bellii OSU 85-389]
Length = 391
Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 156/285 (54%), Positives = 206/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALDVGA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDVGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E++L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVAEDLPDGLLEDIDKFIQQFPPKLQDIENLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y +F++PIG +G+ ++ M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYAEMDFEVPIGKNGDCYDRYLVRMLEMYESVKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G Y AVEAPKGE
Sbjct: 275 CIEKMPQGPVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGEIYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSTGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LA E LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAAESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
+P RA++IRV+F+
Sbjct: 91 IPRRAQFIRVLFS 103
>gi|198455088|ref|XP_001359850.2| GA11278 [Drosophila pseudoobscura pseudoobscura]
gi|198133088|gb|EAL29002.2| GA11278 [Drosophila pseudoobscura pseudoobscura]
Length = 517
Score = 330 bits (846), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 156/285 (54%), Positives = 200/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +FAEI R+ NH MA+ + LD G +TP FWLFEEREK+ EF ERASGAR+HAAY
Sbjct: 221 ARFIRTMFAEIMRLTNHTMAISSSILDCGGITPLFWLFEEREKLYEFSERASGARLHAAY 280
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+G +D+YHFI F RLDEVED+ TENR+W R +G +SA DALNY
Sbjct: 281 IRPGGVASDLPLGFCEDLYHFIGQFKDRLDEVEDLATENRIWRMRNIGIGCISAHDALNY 340
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G +G +LR GIKWDLRK QPYD Y+ +F++ +GT+G+ ++ M+EMR+SL I+ Q
Sbjct: 341 GCTGPVLRACGIKWDLRKQQPYDAYDEIDFNVVVGTNGDCYDRYLVRMREMRESLDIILQ 400
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ MP GE++ DD KI+ P R MK G VPPG TYTAVE+PKGE
Sbjct: 401 CLELMPPGEIKVDDRKITPPQRRNMKTGMEDLIHHFKHFSQGIFVPPGQTYTAVESPKGE 460
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+++PYRCKI+ +AHLA + K+ LAD+VAII
Sbjct: 461 FGVYLVSDGSTRPYRCKIRPASYAHLALMAKLAPNHLLADVVAII 505
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 60/71 (84%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
+ V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M NEQ Y+L VEKLLNIEV
Sbjct: 158 ETVMSADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSCMANEQAYALGVEKLLNIEV 217
Query: 364 PLRAKYIRVMF 374
P RA++IR MF
Sbjct: 218 PRRARFIRTMF 228
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VV+YP ++ + PV++ R INFGP HPAAHGVL + E+
Sbjct: 104 VVMYPTGDQWHQRPPATGKKPPPVDRTFRTKFINFGPAHPAAHGVLRMILEL 155
>gi|34580593|ref|ZP_00142073.1| NADH dehydrogenase I chain D [Rickettsia sibirica 246]
gi|28261978|gb|EAA25482.1| NADH dehydrogenase I chain D [Rickettsia sibirica 246]
Length = 391
Score = 330 bits (845), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F ++L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPSKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|163793190|ref|ZP_02187166.1| NADH dehydrogenase I, D subunit [alpha proteobacterium BAL199]
gi|159181836|gb|EDP66348.1| NADH dehydrogenase I, D subunit [alpha proteobacterium BAL199]
Length = 392
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 159/282 (56%), Positives = 208/282 (73%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+AEI R+LNH++ + T ALDVGAMTP W FEEREK+M FYER SGAR+HAAY RP
Sbjct: 99 IRVLYAEIGRVLNHLLNLTTFALDVGAMTPLLWGFEEREKLMGFYERVSGARLHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P GLL+DI + F +D++E +LTENR++ QRT D+G+VS ++AL++GFS
Sbjct: 159 GGVHQDLPAGLLEDIKAWAEQFPKFVDDMESLLTENRIFKQRTVDIGVVSRQEALDHGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
G +LRGSG+ WDLR QPYD Y +FD+P+G G+ ++ ++E+RQSLRI++Q I
Sbjct: 219 GPVLRGSGVPWDLRVSQPYDAYAEMDFDVPVGKTGDCYARYLVRVEELRQSLRIIDQCIE 278
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP G V++DD KI++P R+EMK GY VP G TYTAVEAPKGEF V
Sbjct: 279 RMPDGPVKSDDRKITSPKRAEMKQSMEALIHHFKLYTEGYHVPAGETYTAVEAPKGEFAV 338
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+LVSDG++KPYRCKI+APGFA LAA + + KG LAD VAII
Sbjct: 339 FLVSDGSNKPYRCKIRAPGFAFLAATDFLTKGHMLADTVAII 380
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYV+ M E ++LAVEKLL +E
Sbjct: 32 GEVVERADPHIGLLHRGTEKLIEYKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLLRLE 91
Query: 363 VPLRAKYIRVMFT 375
VP R +YIRV++
Sbjct: 92 VPKRGQYIRVLYA 104
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E QI+ + +NFGPQHPAAHGVL L E+
Sbjct: 3 EMQIKPLTMNFGPQHPAAHGVLRLVLEM 30
>gi|239947494|ref|ZP_04699247.1| NADH-quinone oxidoreductase subunit D [Rickettsia endosymbiont of
Ixodes scapularis]
gi|239921770|gb|EER21794.1| NADH-quinone oxidoreductase subunit D [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 391
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + + + ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNISSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+N+
Sbjct: 155 FRPGGVVEDLPDGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMNW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESVKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSTGNNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
+P RA++IRV+F+
Sbjct: 91 IPRRAQFIRVLFS 103
>gi|157825613|ref|YP_001493333.1| NADH dehydrogenase subunit D [Rickettsia akari str. Hartford]
gi|157799571|gb|ABV74825.1| NADH dehydrogenase subunit D [Rickettsia akari str. Hartford]
Length = 394
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 98 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 158 FRPGGVAEDLPDGLLEDIDKFIDQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ EF++PIG +G+ + M EM +S++I++Q
Sbjct: 218 GFSGPMLRGSGIAWDLRKSNPYDVYDEMEFEVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+T+D K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 278 CIEKMPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTAGYDVPAGETYKAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G + PYRC+IK+PGFAHL L+ + KG +AD++ II
Sbjct: 338 FGVYLYSQGVNIPYRCRIKSPGFAHLQGLDFMSKGHLMADVITII 382
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 34 GEIVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 93
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 94 VPRRAQFIRVLFS 106
>gi|218534460|sp|A8GN50.2|NUOD_RICAH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVAEDLPDGLLEDIDKFIDQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ EF++PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMEFEVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+T+D K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTAGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G + PYRC+IK+PGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGVNIPYRCRIKSPGFAHLQGLDFMSKGHLMADVITII 379
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEIVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|159479042|ref|XP_001697607.1| NADH:ubiquinone oxidoreductase 49 kDa ND7 subunit [Chlamydomonas
reinhardtii]
gi|34328792|gb|AAQ63700.1| NADH:ubiquinone oxidoreductase 49 kD subunit [Chlamydomonas
reinhardtii]
gi|158274217|gb|EDP00001.1| NADH:ubiquinone oxidoreductase 49 kDa ND7 subunit [Chlamydomonas
reinhardtii]
Length = 467
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 153/282 (54%), Positives = 206/282 (73%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EITR+LNH++A+ H++DVGA+TPF W FEEREK+ EFYER SGARMHAAY R
Sbjct: 174 IRVLFSEITRVLNHLLAITCHSMDVGALTPFLWAFEEREKLFEFYERVSGARMHAAYFRV 233
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+ D+PIGLL D+Y + F++RLDE+E++LT NR+W +RT DVG ++A+ A ++G S
Sbjct: 234 GGVSQDLPIGLLRDVYDWARQFASRLDEMEELLTGNRIWKERTVDVGTITAQMAWDWGCS 293
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
G +LR SGI WDLRK QPYD Y +F++PI HG+ ++ ++EMR+SLRI+ Q +N
Sbjct: 294 GPILRASGIDWDLRKTQPYDAYGKMQFNVPIAGHGDCYDRYLVRLQEMRESLRIIYQCLN 353
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP G ++ D K+ PSRS MK G+ VP G TY AVEAPKGEFGV
Sbjct: 354 EMPDGLYKSPDGKVCPPSRSTMKQSMEALIHHFKLYTEGFHVPAGETYRAVEAPKGEFGV 413
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVS G ++PYRCKI++PG+AHL + I +G+ LAD+V II
Sbjct: 414 YLVSRGGNRPYRCKIRSPGYAHLQMTDVISRGAMLADVVTII 455
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ DPHIGLLHRGTEKL+EYKTY Q LPYFDRLDYVSMMC E Y LA+E+LLN+
Sbjct: 107 GEIIMRADPHIGLLHRGTEKLLEYKTYLQGLPYFDRLDYVSMMCMEHSYVLAIEQLLNVS 166
Query: 363 VPLRAKYIRVMFT 375
VPLR +YIRV+F+
Sbjct: 167 VPLRGQYIRVLFS 179
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++ N +NFGPQHPAAHGVL L E+
Sbjct: 80 KVNNFTLNFGPQHPAAHGVLRLVLEM 105
>gi|238651037|ref|YP_002916894.1| NADH dehydrogenase subunit D [Rickettsia peacockii str. Rustic]
gi|238625135|gb|ACR47841.1| NADH dehydrogenase subunit D [Rickettsia peacockii str. Rustic]
Length = 391
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 204/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|377807000|ref|YP_005090430.1| nad7 gene product (mitochondrion) [Boea hygrometrica]
gi|340549505|gb|AEK53326.1| NADH dehydrogenase subunit 7 (mitochondrion) [Boea hygrometrica]
Length = 392
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 204/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TPF W FEEREK++EFYER SGARMHA++
Sbjct: 96 AQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLLEFYERVSGARMHASF 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 156 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 216 GFSGVMLRGSGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 276 CLNKMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFEPYTEGFSVPASSTYTAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APGFAH L+ + K AD+V II
Sbjct: 336 FGVFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMPADVVTII 380
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG L TEKLIEYKTY QALPY DR +YVSMM E YS AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLQ--TEKLIEYKTYLQALPYSDRSEYVSMMAQEHAYSSAVERLLNCE 91
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 92 VPLRAQYIRVLF 103
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHIMAVGTHAL 70
+QI+N +NFGPQHPAAHGV L E + R HI ++ T L
Sbjct: 6 RQIKNFTLNFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGSLQTEKL 52
>gi|383481414|ref|YP_005390329.1| NADH dehydrogenase subunit D [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933753|gb|AFC72256.1| NADH dehydrogenase subunit D [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 391
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLQDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V PHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNAAPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|57014017|ref|YP_173488.1| NADH dehydrogenase subunit 7 [Nicotiana tabacum]
Length = 394
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 156/285 (54%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCIDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD ++ + DIP+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRKAAPYDVHDQLDPDIPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APGFAH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMPADVVTII 382
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPY DR DYVSMM E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYSDRSDYVSMMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 29 KQIRNMVINFGPQHPAAHGV 48
+QI+N NFGPQHPAAHGV
Sbjct: 6 RQIKNFTSNFGPQHPAAHGV 25
>gi|379713996|ref|YP_005302334.1| NADH dehydrogenase subunit D [Rickettsia massiliae str. AZT80]
gi|376334642|gb|AFB31874.1| NADH dehydrogenase subunit D [Rickettsia massiliae str. AZT80]
Length = 391
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 55/65 (84%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHRGTEKLIE+KTY QA+ YFDRLDYVS MC E ++LAVE LL EVP RA++I
Sbjct: 39 PHIGLLHRGTEKLIEHKTYLQAISYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFI 98
Query: 371 RVMFT 375
RV+F+
Sbjct: 99 RVLFS 103
>gi|157964434|ref|YP_001499258.1| NADH dehydrogenase subunit D [Rickettsia massiliae MTU5]
gi|157844210|gb|ABV84711.1| NADH dehydrogenase I chain D [Rickettsia massiliae MTU5]
Length = 422
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 126 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 185
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 186 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 245
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 246 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 305
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 306 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 365
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 366 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 410
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL EVP RA++I
Sbjct: 70 PHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFI 129
Query: 371 RVMFT 375
RV+F+
Sbjct: 130 RVLFS 134
>gi|355706839|gb|AES02768.1| NADH dehydrogenase Fe-S protein 2, 49kDa [Mustela putorius furo]
Length = 403
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 157/247 (63%), Positives = 189/247 (76%), Gaps = 21/247 (8%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GLLDDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYVRPGGVHQDLPLGLLDDIYEFSKNFSLRVDELEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+PIG+ G+ + ++E
Sbjct: 277 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVDFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAP 261
YTA+EAP
Sbjct: 397 YTAIEAP 403
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPTKETAHWKPPPWNDVDPPKDTMVTNLTLNFGPQHPAAHGVLRLVMELS 102
>gi|391348935|ref|YP_006460175.1| NADH dehydrogenase subunit 7 (mitochondrion) [Mimulus guttatus]
gi|340007660|gb|AEK26524.1| NADH dehydrogenase subunit 7 (mitochondrion) [Mimulus guttatus]
Length = 394
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 204/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F FS+R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFSSRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFEPYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APGFAH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMPADVVTII 382
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DR DYVSMM E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSMMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+QI+N +NFGPQHPAAHGV L E+
Sbjct: 6 RQIKNFTLNFGPQHPAAHGVSRLVLEMN 33
>gi|218534458|sp|A8F1C5.2|NUOD_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL EVP RA++I
Sbjct: 39 PHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFI 98
Query: 371 RVMFT 375
RV+F+
Sbjct: 99 RVLFS 103
>gi|392382094|ref|YP_005031291.1| NADH-quinone oxidoreductase, subunit D [Azospirillum brasilense
Sp245]
gi|356877059|emb|CCC97860.1| NADH-quinone oxidoreductase, subunit D [Azospirillum brasilense
Sp245]
Length = 406
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 206/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNHI+++ T ALDVGA+TP W FEERE +MEFYER GAR+HA Y
Sbjct: 110 AQYIRVLFSEITRILNHILSITTGALDVGAITPALWGFEEREILMEFYERVCGARLHANY 169
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GL DDI+ F F +D+++++LT NR++ QRT D+G+V+ E+A N+
Sbjct: 170 FRPGGVAWDLPAGLTDDIWEFTERFPKFVDDIDNLLTNNRIFKQRTVDIGVVTKEEAFNW 229
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+G MLRGSG+ WDLRK QPY+ Y+ +FD+P+G G+ ++ M+EMRQS R++ Q
Sbjct: 230 GFTGPMLRGSGVAWDLRKSQPYEVYDRMDFDVPVGLTGDCWARYLVRMEEMRQSNRMIRQ 289
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ ++P G VR ++ K+S P R EMK G+ VP G TYTA+EAPKGE
Sbjct: 290 CLKELPEGPVRAEERKVSPPPRGEMKRSMEALIHHFKLFTEGFHVPAGETYTAIEAPKGE 349
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGT+KPYRCKI+APGFAHL L+ + KG LAD VA I
Sbjct: 350 FGVYLVSDGTNKPYRCKIRAPGFAHLQGLDFMSKGHMLADAVANI 394
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYVS MC E Y L +E LL I+
Sbjct: 46 GEVVERCDPHIGLLHRGTEKLIEYKTYLQAVPYFDRLDYVSPMCMEHAYVLGIENLLQIK 105
Query: 363 VPLRAKYIRVMFT 375
PLRA+YIRV+F+
Sbjct: 106 APLRAQYIRVLFS 118
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ QI+ +NFGPQHPAAHGVL L E+
Sbjct: 17 KTQIKPYTMNFGPQHPAAHGVLRLVMELN 45
>gi|350273423|ref|YP_004884736.1| NADH dehydrogenase subunit delta [Rickettsia japonica YH]
gi|348592636|dbj|BAK96597.1| NADH dehydrogenase delta subunit [Rickettsia japonica YH]
Length = 422
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 126 AKFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 185
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 186 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 245
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 246 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 305
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 306 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 365
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 366 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 410
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 62 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 121
Query: 363 VPLRAKYIRVMFT 375
VP RAK+IRV+F+
Sbjct: 122 VPRRAKFIRVLFS 134
>gi|15619556|gb|AAL03020.1| NADH dehydrogenase I chain D [Rickettsia conorii str. Malish 7]
Length = 422
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 126 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 185
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 186 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 245
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 246 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 305
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 306 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 365
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 366 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 410
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 62 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 121
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 122 VPRRAQFIRVLFS 134
>gi|292559466|ref|YP_003540834.1| NADH dehydrogenase subunit 7 [Vermamoeba vermiformis]
gi|290775719|gb|ADD62218.1| NADH dehydrogenase subunit 7 [Vermamoeba vermiformis]
Length = 399
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 161/286 (56%), Positives = 207/286 (72%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+EITRILNH++AV THALDVGA+TPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 102 AKYIRVIFSEITRILNHLLAVTTHALDVGALTPFLWGFEEREKLMEFYERVSGARMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D P+GLLDDIY+F + F R+ E+ED+LT NR+W QR D+G+VS E AL++
Sbjct: 162 FRPGGVAQDFPLGLLDDIYYFCNQFLYRIAEIEDLLTANRIWKQRLVDIGVVSYEQALDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLR +PY+ YE+ +F +P G G+ +I ++EM+QS+ I+ Q
Sbjct: 222 GFSGVMLRGSGVLWDLRVNEPYEVYEDLKFLVPTGKRGDCYDRYLIRVEEMKQSVNIILQ 281
Query: 220 AINKMP-GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ MP G ++ DD KIS PSR+ MK GY V +Y A+EAPKG
Sbjct: 282 CLELMPKTGFIKVDDRKISPPSRAFMKFSMESLIHHFKLFSEGYNVKSEESYAAIEAPKG 341
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVY+ SDGT++P RC+IKAPGF HL AL+ + K LAD+V +I
Sbjct: 342 EFGVYVKSDGTNRPSRCRIKAPGFLHLQALDFMSKYHLLADVVTVI 387
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E Y LAVE LL +PLRAKY
Sbjct: 45 DPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHGYCLAVENLLKCRIPLRAKY 104
Query: 370 IRVMFT 375
IRV+F+
Sbjct: 105 IRVIFS 110
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K+ + + +NFGPQHPAAHGVL L E+
Sbjct: 10 KESKILTLNFGPQHPAAHGVLRLVLEL 36
>gi|229586621|ref|YP_002845122.1| NADH dehydrogenase subunit D [Rickettsia africae ESF-5]
gi|228021671|gb|ACP53379.1| NADH dehydrogenase I chain D [Rickettsia africae ESF-5]
Length = 422
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 126 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 185
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 186 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 245
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 246 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 305
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 306 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 365
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 366 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 410
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 62 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 121
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 122 VPRRAQFIRVLFS 134
>gi|383483825|ref|YP_005392738.1| NADH dehydrogenase subunit D [Rickettsia parkeri str. Portsmouth]
gi|378936179|gb|AFC74679.1| NADH dehydrogenase subunit D [Rickettsia parkeri str. Portsmouth]
Length = 391
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V PHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNAAPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|195389048|ref|XP_002053190.1| GJ23477 [Drosophila virilis]
gi|194151276|gb|EDW66710.1| GJ23477 [Drosophila virilis]
Length = 501
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 158/287 (55%), Positives = 198/287 (68%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L E+ R+ NH MAV + LD GA+TP FWLFEEREK+ EF ER SGAR+HA
Sbjct: 203 PRAKYIRTLCGELMRLTNHTMAVSSSVLDCGAITPLFWLFEEREKLYEFSERLSGARLHA 262
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGGVA D+PIG DD+Y FI FS RLDEVED++T+NR+W R +G +SA DAL
Sbjct: 263 AYIRPGGVAQDMPIGFSDDLYRFIMAFSDRLDEVEDVVTDNRIWRMRNIGIGRISAHDAL 322
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
NYG +G +LR +GIKWDLRK QPYD Y + +FD+ IG+ G+ ++ + EMR+S I+
Sbjct: 323 NYGCTGPVLRATGIKWDLRKQQPYDAYADMKFDVAIGSQGDCYDRYLVRVLEMRESCSII 382
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +N MP G ++ DD KI P R +MK GY VPPG TYTAVE+PK
Sbjct: 383 LQCLNLMPPGHIKVDDRKIMPPQRRKMKTGMEDLIHHFKHFSQGYCVPPGETYTAVESPK 442
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG+S+PYRCKI+ + HLA L K+ LAD+VAII
Sbjct: 443 GEFGVYLVSDGSSRPYRCKIRPASYTHLALLSKLSPSYLLADVVAII 489
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 60/70 (85%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
+ V DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS M EQ YSLAVEKLLNIE+
Sbjct: 142 ETVLSADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSCMACEQAYSLAVEKLLNIEI 201
Query: 364 PLRAKYIRVM 373
P RAKYIR +
Sbjct: 202 PPRAKYIRTL 211
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VL+P +E K + + P+ + R+ INFGP HPAAHGVL + E+
Sbjct: 89 VLWPMGDEWKKRPNPSSRYFPPINRTFRSKFINFGPAHPAAHGVLRMILEL 139
>gi|161723847|ref|NP_360119.2| NADH dehydrogenase subunit D [Rickettsia conorii str. Malish 7]
gi|147705285|sp|Q92ID8.2|NUOD_RICCN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 391
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|341583713|ref|YP_004764204.1| NADH dehydrogenase subunit D [Rickettsia heilongjiangensis 054]
gi|340807939|gb|AEK74527.1| NADH dehydrogenase subunit D [Rickettsia heilongjiangensis 054]
Length = 391
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AKFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RAK+IRV+F+
Sbjct: 91 VPRRAKFIRVLFS 103
>gi|374319188|ref|YP_005065687.1| NADH dehydrogenase I subunit D [Rickettsia slovaca 13-B]
gi|383751134|ref|YP_005426235.1| NADH dehydrogenase subunit D [Rickettsia slovaca str. D-CWPP]
gi|360041737|gb|AEV92119.1| NADH dehydrogenase I chain D [Rickettsia slovaca 13-B]
gi|379774148|gb|AFD19504.1| NADH dehydrogenase subunit D [Rickettsia slovaca str. D-CWPP]
Length = 391
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|383312429|ref|YP_005365230.1| NADH dehydrogenase subunit D [Candidatus Rickettsia amblyommii str.
GAT-30V]
gi|378931089|gb|AFC69598.1| NADH dehydrogenase subunit D [Candidatus Rickettsia amblyommii str.
GAT-30V]
Length = 391
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESVKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V PHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNAAPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|262277298|ref|ZP_06055091.1| NADH dehydrogenase (quinone), d subunit [alpha proteobacterium
HIMB114]
gi|262224401|gb|EEY74860.1| NADH dehydrogenase (quinone), d subunit [alpha proteobacterium
HIMB114]
Length = 391
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + + F EI RIL+HI+ + T ALDVGA+TP W FEEREK+M FYER SG+R+HA Y
Sbjct: 95 AKNIRVAFCEIGRILSHILNITTQALDVGALTPSLWGFEEREKLMVFYERVSGSRLHANY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV +D+P GL DI F +F +D++E++LT+NR++ QR D+GIVS ++AL++
Sbjct: 155 FRPGGVHIDLPTGLDKDILEFCKSFPKVIDDLENLLTDNRIFKQRNVDIGIVSVQEALDH 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSGI WDLRK QPYDGYEN+EF +P+G +G+ + ++EMR+S++I+ Q
Sbjct: 215 GFSGVMIRGSGIPWDLRKSQPYDGYENYEFKVPVGKNGDCYDRYLCRIEEMRESVKIITQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A++ +P G + T D ++ P RS+MK GY VP G TY AVEAPKGE
Sbjct: 275 ALSNLPDGPIMTLDTRVGPPKRSDMKTSMEALINHFKLYTEGYSVPKGETYAAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYRCKIKAPGF HL A++ + KG LAD+ A++
Sbjct: 335 FGVYLVADGTNKPYRCKIKAPGFTHLQAMDYLIKGHMLADVPALL 379
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTYTQA+PYFDRLDYV+ M E ++LAVEKLLNI+
Sbjct: 31 GEVVERADPHIGLLHRGTEKLIEHKTYTQAVPYFDRLDYVAPMNQEHAFALAVEKLLNID 90
Query: 363 VPLRAKYIRVMFT 375
VP+RAK IRV F
Sbjct: 91 VPIRAKNIRVAFC 103
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ K+ + + +NFGPQHPAAHGVL L E+
Sbjct: 1 MSKEFKTVNLNFGPQHPAAHGVLRLILEL 29
>gi|357967330|ref|YP_004935337.1| NADH dehydrogenase subunit 7 (mitochondrion) [Silene vulgaris]
gi|344228015|gb|AEM46200.1| NADH dehydrogenase subunit 7 (mitochondrion) [Silene vulgaris]
gi|385198375|gb|AFI44271.1| NADH dehydrogenase subunit 7 (mitochondrion) [Silene vulgaris]
gi|385198413|gb|AFI44303.1| NADH dehydrogenase subunit 7 (mitochondrion) [Silene vulgaris]
gi|385198446|gb|AFI44332.1| NADH dehydrogenase subunit 7 (mitochondrion) [Silene vulgaris]
Length = 394
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH +A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRILNHSLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLR+ PYD Y +FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDLRRAAPYDVYHQLDFDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNKMPSGMIKADDRKLCPPSRYRMKLSMESSIHHFEPYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 61/72 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+K+I+N NFGPQHPAAHGV L E+
Sbjct: 5 KKEIKNFTSNFGPQHPAAHGVSRLVLEMN 33
>gi|379019171|ref|YP_005295405.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hlp#2]
gi|376331751|gb|AFB28985.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hlp#2]
Length = 391
Score = 326 bits (836), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVVADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|379712234|ref|YP_005300573.1| NADH dehydrogenase subunit D [Rickettsia philipii str. 364D]
gi|376328879|gb|AFB26116.1| NADH dehydrogenase subunit D [Rickettsia philipii str. 364D]
Length = 391
Score = 326 bits (836), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVVADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYV+ MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVAPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|166895611|ref|YP_001661405.1| NADH dehydrogenase subunit 7 [Cycas taitungensis]
gi|166706943|dbj|BAF98407.1| NADH dehydrogenase subunit 7 [Cycas taitungensis]
Length = 394
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA+TP W FEEREK +EF+ER GARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGALTPSLWAFEEREKSLEFHERVPGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DIY F F++R+DE E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIYSFTQQFASRIDESEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD ++ + D+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRKAAPYDAHDQSDSDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++MP G ++ DD K+ PSR +M+ G+ VP +TYTAVEAPKGE
Sbjct: 278 CPDRMPSGMIKADDRKLCPPSRCQMRLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APGFAH L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMLADVVTII 382
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEK IEYKTY QA PY DR DYVSMM E +S AVEKLLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKSIEYKTYLQASPYSDRSDYVSMMAQEHAHSSAVEKLLNRE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
>gi|371907998|emb|CAP18817.1| NADH dehydrogenase subunit 7, partial (mitochondrion)
[Bumilleriopsis peterseniana]
Length = 347
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 166/272 (61%), Positives = 209/272 (76%), Gaps = 22/272 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 76 IRVLFAEITRILNHLLAVGCHAIDVGAITPFLWSFEEREKLIEFYERVSGARIHAAYFRP 135
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGVALD+P+GLLDDI+ F FS RLDE+E++LT NR+W QR D+G+VSA+DAL +GFS
Sbjct: 136 GGVALDLPLGLLDDIFIFARQFSTRLDEIEEILTNNRIWKQRLVDIGVVSAKDALAHGFS 195
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSG+ WDLR QPYD Y +F+F++P GT G+ ++ ++E+RQSLRI+ Q +N
Sbjct: 196 GVILRGSGLTWDLRVSQPYDVYSSFDFEVPSGTKGDCYDRYLVRVEEIRQSLRIIHQCLN 255
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P GE+R D IS PSR+ +K G+ VP G TYTA EAPKGEFGV
Sbjct: 256 NIPVGEIR--DENISAPSRASIKSSIESLIHHFKLYSEGFVVPSGETYTATEAPKGEFGV 313
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
YLVS+G+++PYRCKIKAPGF HL AL I KG
Sbjct: 314 YLVSNGSNRPYRCKIKAPGFNHLQALNFICKG 345
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y+LAVE LLN +
Sbjct: 9 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYTLAVENLLNCK 68
Query: 363 VPLRAKYIRVMFT 375
VPLRA YIRV+F
Sbjct: 69 VPLRAIYIRVLFA 81
>gi|11134048|sp|Q36450.1|NDUS2_NICSY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
2; AltName: Full=NADH dehydrogenase subunit 7
gi|805002|emb|CAA60392.1| NADH:ubiquinone oxydoreductase subunit 7 [Nicotiana sylvestris]
Length = 394
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 204/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCIDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD ++ + DIP+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRKAAPYDVHDQLDPDIPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+AP FAH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPCFAHSQGLDSMSKHHMPADVVTII 382
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLL RGTEKLIEYKTY QALPY DR +YVSMM E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLQRGTEKLIEYKTYLQALPYSDRSEYVSMMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 29 KQIRNMVINFGPQHPAAHGV 48
+QI+N NFGPQHPAAHGV
Sbjct: 6 RQIKNFTSNFGPQHPAAHGV 25
>gi|11466215|ref|NP_066538.1| NADH dehydrogenase subunit 7 [Naegleria gruberi]
gi|10444250|gb|AAG17816.1|AF288092_41 NADH dehydrogenase subunit 7 [Naegleria gruberi]
Length = 395
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITR+LNH++++ THA+DVGA+TPF W FEEREK+MEFYER SGARMHA Y
Sbjct: 99 AQYIRVLFSEITRLLNHLLSITTHAMDVGALTPFLWAFEEREKLMEFYERVSGARMHANY 158
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+P GLL DIY FI +F++R+DE+E++LT NR+W QR D+G+V+ DAL+
Sbjct: 159 FRPGGVSYDLPKGLLHDIYDFIYSFASRIDEMEELLTTNRIWKQRLVDIGVVNYRDALDM 218
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+GVMLRGSGI WDLRK +PY+ Y+ F IP+G +G+ ++ M EMRQS+ I+ Q
Sbjct: 219 GFTGVMLRGSGIPWDLRKCEPYEIYKQLNFYIPVGIYGDCYDRYLVRMSEMRQSISIIHQ 278
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NK+P G VR D+ KI+ P R ++K G VP G +Y VEAPKGE
Sbjct: 279 CLNKIPNGLVRVDNHKITPPYRKQIKTSMESLIHHFKFYSEGINVPQGISYGGVEAPKGE 338
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
G LVS+G++ PYRCKI++PG+AHL + + G +AD+V +I
Sbjct: 339 TGALLVSNGSNMPYRCKIRSPGYAHLQGINHVISGHMIADLVTVI 383
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ DPHIGLLHRGTEKL+EYKTY Q LPYFDRLDYVSMMC E Y LA+E+LL E
Sbjct: 35 GEIIKNADPHIGLLHRGTEKLLEYKTYIQGLPYFDRLDYVSMMCQEHTYCLAIERLLKCE 94
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F+
Sbjct: 95 VPLRAQYIRVLFS 107
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ N ++NFGPQHPAAHGVL L E+
Sbjct: 6 KQTFNNFILNFGPQHPAAHGVLRLIVEL 33
>gi|165933064|ref|YP_001649853.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Iowa]
gi|165908151|gb|ABY72447.1| NADH-quinone oxidoreductase chain D [Rickettsia rickettsii str.
Iowa]
Length = 417
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 121 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 180
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 181 FRPGGVVADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 240
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 241 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 300
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 301 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 360
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + +G +AD++ II
Sbjct: 361 FGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITII 405
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 57 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 116
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 117 VPRRAQFIRVLFS 129
>gi|378722521|ref|YP_005287407.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Arizona]
gi|378723877|ref|YP_005288761.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hauke]
gi|379016569|ref|YP_005292804.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Brazil]
gi|379017666|ref|YP_005293901.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hino]
gi|218534471|sp|B0BX71.2|NUOD_RICRO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|376325093|gb|AFB22333.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Brazil]
gi|376327545|gb|AFB24783.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Arizona]
gi|376330232|gb|AFB27468.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hino]
gi|376332892|gb|AFB30125.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Hauke]
Length = 391
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVVADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + +G +AD++ II
Sbjct: 335 FGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITII 379
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|157828356|ref|YP_001494598.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. 'Sheila
Smith']
gi|378721169|ref|YP_005286056.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Colombia]
gi|218534470|sp|A8GRR5.1|NUOD_RICRS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|157800837|gb|ABV76090.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. 'Sheila
Smith']
gi|376326193|gb|AFB23432.1| NADH dehydrogenase subunit D [Rickettsia rickettsii str. Colombia]
Length = 391
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVVADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + +G +AD++ II
Sbjct: 335 FGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITII 379
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL +
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECK 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|157803905|ref|YP_001492454.1| NADH dehydrogenase subunit D [Rickettsia canadensis str. McKiel]
gi|157785168|gb|ABV73669.1| NADH dehydrogenase delta subunit [Rickettsia canadensis str.
McKiel]
Length = 395
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 99 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 158
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L +VE +L ENRLW QR D+G+V ++A+ +
Sbjct: 159 FRPGGVAEDLPDGLLEDIDKFIEQFHPKLQDVESLLNENRLWKQRLVDIGVVLQQEAMEW 218
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++PIG +G+ ++ + EM +S++I++Q
Sbjct: 219 GFSGPMLRGSGIAWDLRKSNPYDVYDEIDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQ 278
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+T+D K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 279 CIEKMPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTEGYEVPAGETYKAVEAPKGE 338
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IK PGFAHL L + KG +AD++ II
Sbjct: 339 FGVYLYSIGNNQPYRCRIKTPGFAHLQGLNFMSKGHLMADVITII 383
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 35 GEVVNNTDPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLKCE 94
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 95 VPRRAQFIRVLFS 107
>gi|379023054|ref|YP_005299715.1| NADH dehydrogenase subunit D [Rickettsia canadensis str. CA410]
gi|218534457|sp|A8EZ86.2|NUOD_RICCK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|376323992|gb|AFB21233.1| NADH dehydrogenase subunit D [Rickettsia canadensis str. CA410]
Length = 391
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L +VE +L ENRLW QR D+G+V ++A+ +
Sbjct: 155 FRPGGVAEDLPDGLLEDIDKFIEQFHPKLQDVESLLNENRLWKQRLVDIGVVLQQEAMEW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++PIG +G+ ++ + EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEIDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+T+D K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTEGYEVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IK PGFAHL L + KG +AD++ II
Sbjct: 335 FGVYLYSIGNNQPYRCRIKTPGFAHLQGLNFMSKGHLMADVITII 379
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNTDPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLKCE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
>gi|88608146|ref|YP_506448.1| NADH dehydrogenase subunit D [Neorickettsia sennetsu str. Miyayama]
gi|123491783|sp|Q2GDJ8.1|NUOD_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88600315|gb|ABD45783.1| NADH dehydrogenase I, D subunit [Neorickettsia sennetsu str.
Miyayama]
Length = 388
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 155/287 (54%), Positives = 209/287 (72%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + ++F EITRILNH++ V THALDVGAM P FW+FEEREKM+ FYE+ASGAR HA
Sbjct: 90 PRAQYLRVIFVEITRILNHLLNVTTHALDVGAMNPLFWMFEEREKMLSFYEKASGARFHA 149
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGG+A DIP GL ++I F+ +F+ +LD+V D+LT+N ++ QR D+G VS +A+
Sbjct: 150 AYIRPGGLAADIPDGLDEEIMSFLESFTHKLDDVADVLTDNPIFKQRLVDIGKVSKREAV 209
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
GFSG +LR SG+ WDLRK QPY+ YE+ +F IP+G+ G+ ++ M EM +S++I+
Sbjct: 210 ALGFSGPVLRASGVPWDLRKSQPYEVYESLDFAIPVGSCGDSYDRYLVRMAEMYESVKII 269
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+Q I+K+P G V DD K++ PSR+EMK GY VP G TY AVE+PK
Sbjct: 270 KQCIDKLPEGPVVVDDRKVAPPSRAEMKTSMEALIHHFKLYSEGYHVPEGETYFAVESPK 329
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVY+VSDGT+KPYRC+I+APGF HL AL+ + + LAD+ AI+
Sbjct: 330 GEFGVYIVSDGTNKPYRCRIRAPGFVHLQALDTLSRKHLLADVPAIL 376
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V +DPHIG LHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL I
Sbjct: 28 GETVERLDPHIGFLHRGTEKLIEHKTYLQALPYFDRLDYVSPMAQEHAYSLCVEKLLGIT 87
Query: 363 VPLRAKYIRVMFT 375
VP RA+Y+RV+F
Sbjct: 88 VPPRAQYLRVIFV 100
>gi|371907988|emb|CAP18812.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Tribonema
aequale]
Length = 325
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 153/260 (58%), Positives = 198/260 (76%), Gaps = 22/260 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK++EFYER GAR+HAAY RP
Sbjct: 67 IRVLFAEITRILNHLLAVGCHAIDVGAMTPFLWAFEEREKLIEFYERVCGARIHAAYFRP 126
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GG+A D+P+GL DDIY F+ FS RLDE+E++L+ NR+W QR D+GIV+A DA+ +GFS
Sbjct: 127 GGLACDLPLGLCDDIYVFLLQFSTRLDEIEEILSSNRIWKQRLVDIGIVTAHDAMAHGFS 186
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSG+ WDLR QPYD Y + +FDIP+GT G+ ++ ++E+RQSLRI+ Q ++
Sbjct: 187 GVILRGSGLNWDLRISQPYDVYSSLKFDIPVGTKGDCYDRYLLRLEEIRQSLRIIHQCLS 246
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G +R DD+ + PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 247 NIPYGPIR-DDL-VCPPSRTLLKSSIESLIHHFKLYSEGVIVPSGETYTATEAPKGEFGV 304
Query: 268 YLVSDGTSKPYRCKIKAPGF 287
YLVS+GT++PYRCKIK+PGF
Sbjct: 305 YLVSNGTNRPYRCKIKSPGF 324
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 58/72 (80%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL +V
Sbjct: 1 EIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLQSKV 60
Query: 364 PLRAKYIRVMFT 375
PLR+ YIRV+F
Sbjct: 61 PLRSIYIRVLFA 72
>gi|389877832|ref|YP_006371397.1| NADH dehydrogenase I subunit D [Tistrella mobilis KA081020-065]
gi|388528616|gb|AFK53813.1| NADH dehydrogenase I chain D [Tistrella mobilis KA081020-065]
Length = 395
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 149/282 (52%), Positives = 207/282 (73%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAE+TRI NH++ + T A+D+GA TP W FE+RE +M FY++ GAR+HA Y RP
Sbjct: 102 IRVMFAELTRIANHLLNMTTFAMDLGATTPLLWGFEDREIIMGFYDKVCGARLHANYFRP 161
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++++P GLLD+I+ F F R D++E++++ +R+W QRT DVG++SAEDAL++G +
Sbjct: 162 GGVSMELPAGLLDEIWKFTEEFPKRFDDLENLMSHSRIWKQRTVDVGVLSAEDALDWGLT 221
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAIN 222
G MLRGSG+ WDLRK QPYD Y+ +FDIP+G +G+V + MKE+R+SL+IV Q I
Sbjct: 222 GPMLRGSGVPWDLRKAQPYDVYDRMDFDIPVGRNGDVYDRYNVRMKEVRESLKIVRQCIE 281
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP G RT+D K++ P+R++MK G+ VP G Y EAPKGEFGV
Sbjct: 282 QMPDGPYRTEDRKVAPPARADMKRSMEALIHHFKLYTEGFKVPAGEVYVGTEAPKGEFGV 341
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDGT+KPYRCKI+APGFAH+AA++ + KG LAD VAI+
Sbjct: 342 YLVSDGTNKPYRCKIRAPGFAHIAAMDFMSKGHLLADAVAIL 383
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVS+M E Y LAVEKL IE
Sbjct: 35 GEVVTRADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIMNQEHAYVLAVEKLAGIE 94
Query: 363 VPLRAKYIRVMFT 375
VPLR +YIRVMF
Sbjct: 95 VPLRGQYIRVMFA 107
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
E I+ M++NFGPQHPAAHGVL L E +TR H+
Sbjct: 5 TETSIKPMMLNFGPQHPAAHGVLRLVLEMDGEVVTRADPHV 45
>gi|407781579|ref|ZP_11128797.1| NADH dehydrogenase, D subunit [Oceanibaculum indicum P24]
gi|407207796|gb|EKE77727.1| NADH dehydrogenase, D subunit [Oceanibaculum indicum P24]
Length = 392
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 159/285 (55%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+AEITRILNH++ + T ALDVGAMTP W FEEREK+MEFYER GAR+H+AY
Sbjct: 96 AQYIRVLYAEITRILNHLLNITTFALDVGAMTPLLWGFEEREKLMEFYERVCGARLHSAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GL DDI + TF +D++E +LTENR++ QRT D+GI+SAE+A +
Sbjct: 156 FRPGGVHQDLPAGLADDILAWTETFPKIIDDIESLLTENRIFKQRTVDIGIMSAEEAQAW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG LR S + WDLRK QPYD Y + +FD+ IG G+ ++ M EMR+SL+I+ Q
Sbjct: 216 GFSGPSLRASNVPWDLRKSQPYDAYADMDFDVVIGKTGDCYARYLVRMAEMRESLKIMRQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
AI KMP G V+T D K++ P R EMK GY VP G TYTAVEAPKGE
Sbjct: 276 AIEKMPEGPVKTTDRKVAPPKRGEMKQSMEALIHHFKLYTEGYHVPAGETYTAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRC I+APGF LAA++ + KG LAD VA++
Sbjct: 336 FGVYLVADGSNRPYRCHIRAPGFPFLAAMDYMCKGHMLADSVAVL 380
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYVS MC E Y+LAVEKLL I
Sbjct: 32 GEVIERADPHIGLLHRGTEKLIEYKTYLQAVPYFDRLDYVSPMCQEHAYALAVEKLLGIT 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV++
Sbjct: 92 VPARAQYIRVLYA 104
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E I+ M +NFGPQHPAAHGVL L E+
Sbjct: 3 EVTIKPMTLNFGPQHPAAHGVLRLVLEM 30
>gi|353526429|ref|YP_004927501.1| nad7 (mitochondrion) [Brassica oleracea]
gi|353526726|ref|YP_004927820.1| nad7 (mitochondrion) [Brassica rapa subsp. campestris]
gi|353531337|ref|YP_004927723.1| nad7 (mitochondrion) [Brassica juncea]
gi|335354914|gb|AEH43470.1| nad7 [Brassica rapa subsp. campestris]
gi|335354974|gb|AEH43529.1| nad7 [Brassica oleracea]
gi|335355070|gb|AEH43623.1| nad7 [Brassica juncea]
gi|339511266|emb|CBX48321.1| nad7 [Brassica napus]
Length = 394
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSLRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APGFAH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGFAHSQGLDSMSKHHMPADVVTII 382
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DR DYVSMM E +S AVEKLLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSMMAQEHAHSSAVEKLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++QI+N NFGPQHPAAHGV L E+
Sbjct: 5 KRQIKNFTSNFGPQHPAAHGVSRLVLEMN 33
>gi|300122799|emb|CBK23814.2| unnamed protein product [Blastocystis hominis]
Length = 410
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 142/285 (49%), Positives = 209/285 (73%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRI+NH++ +G+HALD+G+ T WLFEEREK++EFYERA+GARMHA Y
Sbjct: 114 AQYIRVIFAEITRIINHLIGLGSHALDIGSTTVIIWLFEEREKLLEFYERATGARMHANY 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV DIP+GLL+D+Y F + F+ RLD++E++LT NR+W +R D+G+++ + AL+
Sbjct: 174 FRPGGVRQDIPLGLLNDLYIFCNEFNDRLDDMEELLTNNRIWRERLVDIGVITKQAALDL 233
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
+GV+LR +G+KWDLRK PYD Y+ +FDIP+GT+G+ +I ++EMRQS+RI+ Q
Sbjct: 234 NLTGVLLRSTGVKWDLRKTFPYDAYDKVQFDIPVGTNGDCFDRFIIRIEEMRQSVRIINQ 293
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
IN++ G +++D+ KIS PS+ ++K G+ V P Y ++EAPKGE
Sbjct: 294 CINQISEGPIKSDNYKISIPSKVQIKQSMEALIDHFKIFSEGFKVEPNEVYCSIEAPKGE 353
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG++KPYRC +K+ GF HL +L+ + +G +AD+ +I
Sbjct: 354 FGVYLVSDGSNKPYRCHLKSSGFIHLQSLDYLTRGHLIADVTTVI 398
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIG LHRGTEKLIE KTY QALPYFDRLDY++M+ NE CY LAVEKLL +
Sbjct: 50 GEIVQKADPHIGFLHRGTEKLIENKTYLQALPYFDRLDYIAMLENEHCYVLAVEKLLQCK 109
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 110 VPLRAQYIRVIF 121
>gi|357967203|ref|YP_004935257.1| NADH dehydrogenase subunit 7 (mitochondrion) [Silene conica]
gi|346228038|gb|AEO21044.1| NADH dehydrogenase subunit 7 (mitochondrion) [Silene conica]
Length = 394
Score = 323 bits (828), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 200/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRLLNHLLALTTHAMDVGALTPFLWSFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV D+P GL DI F++R+DE+E+M T NR+W R D+G V+A+ A +
Sbjct: 158 IRPGGVGQDLPFGLCRDIDSSTQQFASRIDELEEMSTGNRIWKDRLVDIGSVTAQQAKAW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLR+ PYD Y +FD+P+GT G+ I ++EMRQSLR++ Q
Sbjct: 218 GFSGVMLRGPGVCWDLRRAAPYDVYHELDFDVPVGTRGDCYDRYCIRIEEMRQSLRLIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ KMP G ++ DD K+ PSRS MK G+ VP + YTAVEAPKGE
Sbjct: 278 CLKKMPTGMIKADDRKLCPPSRSAMKLSMESSIHHFELYTEGFSVPACSRYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMC E YS AVE LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYMQALPYFDRLDYVSMMCQEHAYSSAVENLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+K ++N +NFGPQHPAAHGV L E+
Sbjct: 5 QKSVKNFTLNFGPQHPAAHGVPRLVLEMN 33
>gi|94502715|ref|YP_588347.1| NADH dehydrogenase subunit 7 [Zea mays subsp. mays]
gi|114151646|ref|YP_740386.1| NADH dehydrogenase subunit 7 [Zea mays subsp. parviglumis]
gi|40795154|gb|AAR91198.1| NADH dehydrogenase subunit 7 (mitochondrion) [Zea mays]
gi|93116053|gb|ABE98686.1| NADH dehydrogenase subunit 7 (mitochondrion) [Zea mays subsp. mays]
gi|93116097|gb|ABE98729.1| NADH dehydrogenase subunit 7 (mitochondrion) [Zea mays subsp. mays]
gi|102567979|gb|ABF70863.1| NADH dehydrogenase subunit 7 (mitochondrion) [Zea mays subsp.
parviglumis]
gi|102579646|gb|ABF70926.1| NADH dehydrogenase subunit 7 (mitochondrion) [Zea mays subsp. mays]
gi|413954234|gb|AFW86883.1| NADH dehydrogenase subunit 7 [Zea mays]
Length = 394
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 200/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A THA+DVGA TPF W FEEREK++EFYER GARMHA++
Sbjct: 98 AQYIRVLFCEITRISNHSLASTTHAMDVGASTPFLWAFEEREKLLEFYERVPGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CPNRMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTII 382
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPYFDR DYVS M E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYFDRSDYVSTMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
>gi|93116145|gb|ABE98776.1| NADH dehydrogenase subunit 7 [Zea mays subsp. mays]
Length = 394
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 200/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A THA+DVGA TPF W FEEREK++EFYER GARMHA++
Sbjct: 98 AQYIRVLFCEITRISNHSLASTTHAMDVGASTPFLWAFEEREKLLEFYERVPGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CPNRMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTII 382
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPYFDR DYVS M E +S AVE+L+N E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYFDRSDYVSTMAQEHAHSSAVERLVNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
>gi|60117114|ref|YP_209577.1| NADH dehydrogenase subunit 7 [Polysphondylium pallidum]
gi|51339678|gb|AAU00592.1| NADH dehydrogenase subunit 7 [Polysphondylium pallidum]
Length = 406
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 199/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITR+LNHI+A THA+DVGA+TPF W FEEREK+MEFYER SGARMH+AY
Sbjct: 110 AKVIRILFSEITRVLNHILATTTHAMDVGALTPFLWAFEEREKLMEFYERVSGARMHSAY 169
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+ L +DIY F + RL+E+EDML NR+W QR D+G VS+E++ N
Sbjct: 170 IRPGGVAFDLPLNLSEDIYKFCQQYRKRLEEIEDMLINNRIWKQRLVDIGTVSSEESQNA 229
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+GVMLRGSGI +D+RK PYD Y+ + F+I +G N ++ +KEM QSL I+EQ
Sbjct: 230 GFTGVMLRGSGIIYDIRKNYPYDDYDKYNFNIIVGEDNNSYTRFILRIKEMYQSLMIIEQ 289
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A+N + G ++ + + + P R+ +K GY +P YT VEAPKGE
Sbjct: 290 ALNNLKPGLIKIEGLNLVAPDRAFVKKDMESCINHFKYFSEGYVIPANEIYTIVEAPKGE 349
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S+ T+KPYRC+IKAPGF HL L +GK LAD+V +I
Sbjct: 350 FGVYLKSNNTAKPYRCRIKAPGFLHLQGLNMMGKDHLLADVVTLI 394
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 63/79 (79%), Gaps = 6/79 (7%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL---- 358
++ V IDPHIGLLHRGTEKLIE+KTYTQALPYFDRLDYVSM E YSLAVE+L
Sbjct: 40 SETVKRIDPHIGLLHRGTEKLIEFKTYTQALPYFDRLDYVSMQVQEHAYSLAVERLYLQS 99
Query: 359 --LNIEVPLRAKYIRVMFT 375
+ +EVP+RAK IR++F+
Sbjct: 100 YGIELEVPVRAKVIRILFS 118
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI--MAVGTHAL-DVGAMTPFFW 80
K I+N +NFGPQHPAAHGVL L E + RI HI + GT L + T
Sbjct: 12 KLIKNFTLNFGPQHPAAHGVLRLIVELDSETVKRIDPHIGLLHRGTEKLIEFKTYTQALP 71
Query: 81 LFEEREKM-MEFYERASGARMHAAYVRPGGVALDIPI 116
F+ + + M+ E A + Y++ G+ L++P+
Sbjct: 72 YFDRLDYVSMQVQEHAYSLAVERLYLQSYGIELEVPV 108
>gi|13449329|ref|NP_085511.1| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
gi|6851019|emb|CAA69735.3| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
gi|339773232|gb|AEK01256.1| nad7 [Arabidopsis thaliana]
gi|339773309|gb|AEK01331.1| nad7 [Arabidopsis thaliana]
Length = 394
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYCIRIEEMRQSLRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DR DYVSMM E +S AVEKLLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSMMAQEHAHSSAVEKLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++QI+N NFGPQHPAAHGV L E+
Sbjct: 5 KRQIKNFTSNFGPQHPAAHGVSRLVLEMN 33
>gi|323649875|ref|YP_004237249.1| NADH dehydrogenase subunit 7 (mitochondrion) [Ricinus communis]
gi|322394255|gb|ADW96012.1| NADH dehydrogenase subunit 7 (mitochondrion) [Ricinus communis]
Length = 394
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH +A+ THA+DVGA TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRILNHSLALTTHAMDVGAPTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLRK PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDLRKAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNKMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPY DR DYVS M E YS AVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEHAYSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 30 QIRNMVINFGPQHPAAHGV 48
QI+N NFGPQHPAAHGV
Sbjct: 7 QIKNFTSNFGPQHPAAHGV 25
>gi|89280745|ref|YP_514643.1| NADH dehydrogenase subunit 7 [Oryza sativa Indica Group]
gi|114151580|ref|YP_740366.1| NADH dehydrogenase subunit 7 [Zea perennis]
gi|115278548|ref|YP_762338.1| NADH dehydrogenase subunit 7 [Sorghum bicolor]
gi|115278618|ref|YP_762499.1| NADH dehydrogenase subunit 7 [Tripsacum dactyloides]
gi|194033225|ref|YP_002000562.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|23495385|dbj|BAC19866.1| NADH dehydrogenase subunit 7 [Oryza sativa Japonica Group]
gi|74100112|gb|AAZ99276.1| NADH dehydrogenase subunit 7 (mitochondrion) [Oryza sativa Indica
Group]
gi|74100167|gb|AAZ99330.1| NADH dehydrogenase subunit 7 (mitochondrion) [Oryza sativa Japonica
Group]
gi|74100221|gb|AAZ99383.1| NADH dehydrogenase subunit 7 (mitochondrion) [Oryza sativa Japonica
Group]
gi|102567914|gb|ABF70831.1| NADH dehydrogenase subunit 7 (mitochondrion) [Zea perennis]
gi|114309669|gb|ABI60886.1| NADH dehydrogenase subunit 7 (mitochondrion) [Sorghum bicolor]
gi|114432109|gb|ABI74658.1| NADH dehydrogenase subunit 7 (mitochondrion) [Tripsacum
dactyloides]
gi|164422244|gb|ABY55217.1| NADH dehydrogenase subunit 7 [Bambusa oldhamii]
gi|340748042|gb|AEK66759.1| NADH dehydrogenase subunit 7 [Ferrocalamus rimosivaginus]
gi|353685261|gb|AER13024.1| NADH dehydrogenase subunit 7 (mitochondrion) [Oryza sativa Indica
Group]
gi|353685335|gb|AER13097.1| NADH dehydrogenase subunit 7 (mitochondrion) [Oryza sativa Indica
Group]
gi|372861945|gb|AEX98095.1| NADH dehydrogenase subunit 7 (mitochondrion) [Ferrocalamus
rimosivaginus]
gi|374277641|gb|AEZ03747.1| NADH dehydrogenase subunit 7 (mitochondrion) [Oryza sativa Indica
Group]
gi|374277685|gb|AEZ03790.1| NADH dehydrogenase subunit 7 (mitochondrion) [Oryza sativa Indica
Group]
Length = 394
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 200/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A THA+DVGA TPF W FEEREK++EFYER GARMHA++
Sbjct: 98 AQYIRVLFCEITRISNHSLASTTHAMDVGASTPFLWAFEEREKLLEFYERVPGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CPNQMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTII 382
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPYFDR DYVS M E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYFDRSDYVSTMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
>gi|209964547|ref|YP_002297462.1| NADH-quinone oxidoreductase subunit D [Rhodospirillum centenum SW]
gi|229891300|sp|B6ISX8.1|NUOD_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209958013|gb|ACI98649.1| NADH-quinone oxidoreductase chain D [Rhodospirillum centenum SW]
Length = 398
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/284 (55%), Positives = 204/284 (71%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EITRILNH++ + T LDVGA+TP W FEEREK+M FYER SGARMHA Y RP
Sbjct: 103 IRVLFSEITRILNHLLNITTFGLDVGAITPSLWGFEEREKLMAFYERVSGARMHANYFRP 162
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV LD+P GL DDI+ + F + ++ ++LTENR++ QRT D+G+VS DAL +GFS
Sbjct: 163 GGVNLDMPAGLADDIWEYTERFPKFVADLNNLLTENRIFKQRTVDIGVVSRADALAWGFS 222
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
G M+RGSG+ WDLRK QPYD Y+ F+FDIP+G+ G+ ++ M+EMRQS R++ QA+
Sbjct: 223 GPMIRGSGVPWDLRKAQPYDRYDEFDFDIPVGSTGDCYARYLVRMEEMRQSNRLIRQALE 282
Query: 223 KMPG--GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G V+ +D KI+ P R EMK GY VP G TYTAVE+PKGEF
Sbjct: 283 KLAKTPGPVKVNDRKIAPPPRGEMKRSMESLIHHFKLYTEGYHVPAGETYTAVESPKGEF 342
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDGT++PYRCKI+ GF+HL A++ + KG LAD VAII
Sbjct: 343 GVYLVSDGTNRPYRCKIRPTGFSHLQAMDFMSKGHMLADTVAII 386
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVS M E ++LA EKLL I
Sbjct: 36 GEVVQRADPHVGLLHRGTEKLIEYKTYIQALPYFDRLDYVSPMSQEHAFALATEKLLGIT 95
Query: 363 VPLRAKYIRVMFT 375
VP+R +YIRV+F+
Sbjct: 96 VPVRGQYIRVLFS 108
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E QI+ +NFGPQHPAAHGVL L E+
Sbjct: 6 AETQIKPFTMNFGPQHPAAHGVLRLVLEM 34
>gi|81176545|ref|YP_398427.1| nad7 [Triticum aestivum]
gi|485862|emb|CAA52952.1| NADH dehydrogenase [Triticum aestivum]
gi|78675269|dbj|BAE47694.1| nad7 [Triticum aestivum]
gi|169649078|gb|ACA62639.1| nad7 [Triticum aestivum]
gi|291498633|gb|ADE08107.1| nad7-1 [Triticum aestivum]
gi|291498634|gb|ADE08108.1| nad7-2 [Triticum aestivum]
Length = 394
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 200/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A THA+DVGA TPF W FEEREK++EFYER GARMHA++
Sbjct: 98 AQYIRVLFCEITRISNHSLASTTHAMDVGASTPFLWAFEEREKLLEFYERVPGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CPNQMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTII 382
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPYFDRLDYVS M E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYFDRLDYVSTMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
>gi|160688745|gb|ABX45161.1| NADH dehydrogenase subunit 7 [Polysphondylium pallidum]
Length = 406
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 198/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITR+LNHI+A THA+DVGA+TPF W FEEREK+MEFYER SGARMH+AY
Sbjct: 110 AKVIRILFSEITRVLNHILATTTHAMDVGALTPFLWAFEEREKLMEFYERVSGARMHSAY 169
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+ L +DIY F + RL+E+EDML NR+W QR D+G VS ED+ N
Sbjct: 170 IRPGGVAFDLPLNLSEDIYTFCQQYRKRLEEIEDMLINNRIWKQRLVDIGTVSMEDSQNA 229
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+GVMLRGSG+ +D+RK PYD Y+ + F+I +G N ++ +KEM QSL I+EQ
Sbjct: 230 GFTGVMLRGSGVIYDIRKNYPYDDYDKYNFNIIVGEDNNSYTRFILRIKEMYQSLIIIEQ 289
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A+N + G ++ + + + P R+ +K GY +P YT VEAPKGE
Sbjct: 290 ALNNLKPGLIKIEGLNLVAPDRAFVKKDMESCINHFKYFSEGYIIPSNEIYTIVEAPKGE 349
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S+ T+KPYRC+IKAPGF HL L +GK LAD+V +I
Sbjct: 350 FGVYLKSNNTAKPYRCRIKAPGFLHLQGLNMMGKDHLLADVVTLI 394
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 63/79 (79%), Gaps = 6/79 (7%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL---- 358
++ V IDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM E YSLAVE+L
Sbjct: 40 SETVKRIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMQVQEHAYSLAVERLYLQS 99
Query: 359 --LNIEVPLRAKYIRVMFT 375
+ +E+P+RAK IR++F+
Sbjct: 100 YDIELEIPVRAKVIRILFS 118
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI--MAVGTHAL-DVGAMTPFFW 80
K I+N +NFGPQHPAAHGVL L E + RI HI + GT L + T
Sbjct: 12 KLIKNFTLNFGPQHPAAHGVLRLIVELDSETVKRIDPHIGLLHRGTEKLIEYKTYTQALP 71
Query: 81 LFEEREKM-MEFYERASGARMHAAYVRPGGVALDIPI 116
F+ + + M+ E A + Y++ + L+IP+
Sbjct: 72 YFDRLDYVSMQVQEHAYSLAVERLYLQSYDIELEIPV 108
>gi|254796919|ref|YP_003081756.1| NADH dehydrogenase subunit D [Neorickettsia risticii str. Illinois]
gi|254590155|gb|ACT69517.1| NADH dehydrogenase (quinone), d subunit [Neorickettsia risticii
str. Illinois]
Length = 388
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/287 (53%), Positives = 208/287 (72%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + ++F EITRILNH++ + THALDVGAM P FW+FEEREKM+ FYE+ASGAR HA
Sbjct: 90 PRAQYLRVIFVEITRILNHLLNITTHALDVGAMNPLFWMFEEREKMLSFYEKASGARFHA 149
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGG+A DIP GL ++I F+ +F +LD+V D+LT+N ++ QR D+G VS ++A+
Sbjct: 150 AYIRPGGLAADIPDGLDEEIMSFLESFPHKLDDVADVLTDNPIFKQRLVDIGKVSKKEAV 209
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
GFSG +LR SGI WDLR+ QPY+ YE+ +F IP+G G+ ++ M EM +S++I+
Sbjct: 210 ALGFSGPVLRASGIPWDLRRSQPYEVYESLDFAIPVGNCGDSYDRYLVRMAEMYESVKII 269
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+Q I+++P G V DD K++ PSR+EMK GY VP G TY AVE+PK
Sbjct: 270 KQCIDRLPEGPVVVDDRKVAPPSRAEMKTSMEALIHHFKLYSEGYHVPEGETYFAVESPK 329
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVY+VSDGT+KPYRC+I+APGF HL AL+ + + LAD+ AI+
Sbjct: 330 GEFGVYIVSDGTNKPYRCRIRAPGFVHLQALDALSRKHLLADVPAIL 376
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V +DPHIG LHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL I
Sbjct: 28 GETVERLDPHIGFLHRGTEKLIEHKTYLQALPYFDRLDYVSPMAQEHAYSLCVEKLLGIT 87
Query: 363 VPLRAKYIRVMFT 375
VP RA+Y+RV+F
Sbjct: 88 VPPRAQYLRVIFV 100
>gi|371907962|emb|CAP18134.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
sp. 395]
Length = 321
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/257 (59%), Positives = 195/257 (75%), Gaps = 22/257 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TP W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 66 IRVIFAEITRILNHLLAVGCHAIDVGAITPILWSFEEREKLIEFYERVSGARIHAAYFRP 125
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+V+A DA+ +GFS
Sbjct: 126 GGVSLDLPLGLMDDIYVFIIQFSTRLDELEELLTSNRIWKQRLVDIGVVTASDAIAHGFS 185
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ +I ++E+RQSL I+ Q +N
Sbjct: 186 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLIRLEEIRQSLSIIHQCLN 245
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 246 NIPQGPVR--DENISPPSRTNLKSSIESLIHHFKLYTEGVVVPCGETYTATEAPKGEFGV 303
Query: 268 YLVSDGTSKPYRCKIKA 284
YLVS+GT++PYRCKIK+
Sbjct: 304 YLVSNGTNRPYRCKIKS 320
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%)
Query: 305 IVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVP 364
IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL +VP
Sbjct: 1 IVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLQCKVP 60
Query: 365 LRAKYIRVMF 374
+R+ YIRV+F
Sbjct: 61 IRSIYIRVIF 70
>gi|114151612|ref|YP_740444.1| NADH dehydrogenase subunit 7 [Zea luxurians]
gi|110287608|gb|ABG65654.1| NADH dehydrogenase subunit 7 (mitochondrion) [Zea luxurians]
Length = 392
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 200/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A THA+DVGA TPF W FEEREK++EFYER GARMHA++
Sbjct: 96 AQYIRVLFCEITRISNHSLASTTHAMDVGASTPFLWAFEEREKLLEFYERVPGARMHASF 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 156 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 216 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 276 CPNQMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAH L+ + K AD+V II
Sbjct: 336 FGVFLVSNGSNRPYRCKIRAPGFAHSQGLDSMSKHHMPADVVTII 380
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPYFDR DYVS M E +S AVE+LLN E
Sbjct: 32 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYFDRSDYVSTMAQEHAHSSAVERLLNCE 91
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 92 VPLRAQYIRVLFC 104
>gi|409401845|ref|ZP_11251499.1| NADH dehydrogenase subunit D [Acidocella sp. MX-AZ02]
gi|409129482|gb|EKM99333.1| NADH dehydrogenase subunit D [Acidocella sp. MX-AZ02]
Length = 399
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 154/293 (52%), Positives = 211/293 (72%), Gaps = 21/293 (7%)
Query: 38 FGPQHPA-AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERAS 96
G Q P A + +LFAE+TR+LNH++A+G ALD GA++P W++EEREK++EFYERAS
Sbjct: 95 LGVQAPERAQWIRVLFAELTRVLNHLLAIGHFALDCGAISPSLWMYEEREKLLEFYERAS 154
Query: 97 GARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIV 156
GAR H+ Y RPGGVA D+P GL DI + + +DE+E++L NR++ QR D+G++
Sbjct: 155 GARFHSNYFRPGGVAKDLPAGLEADIAAWADEYPKFIDEMENLLNGNRIFKQRLVDIGVI 214
Query: 157 SAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMR 211
SA++AL +GFSG LRGSG+ WDLR+ QPYD Y EFD+P+G HG+ ++ M EMR
Sbjct: 215 SADEALAWGFSGPSLRGSGVAWDLRRAQPYDKYAEVEFDVPVGKHGDSYDRYLVRMAEMR 274
Query: 212 QSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYT 256
+S++IV+QA+ KM G ++ D KI+ P+R+EMK GY VP GATYT
Sbjct: 275 ESVKIVKQALAKMKPGPIKVQDRKITPPTRAEMKHSMEALIHHFKLYTEGYHVPAGATYT 334
Query: 257 AVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
AVEAPKGEFGVYL +DG+++PYRCKI++ GFAHL A +++ KG LAD+VAI+
Sbjct: 335 AVEAPKGEFGVYLQADGSNRPYRCKIRSTGFAHLQAADRLCKGHMLADMVAIL 387
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIEYK+Y QA+PYFDRLDYVS M E ++LA EKLL ++
Sbjct: 39 GEVIERCDPHIGLLHRGTEKLIEYKSYMQAVPYFDRLDYVSPMGCEHAFALATEKLLGVQ 98
Query: 363 VPLRAKYIRVMFT 375
P RA++IRV+F
Sbjct: 99 APERAQWIRVLFA 111
>gi|347758130|ref|YP_004865692.1| NADH dehydrogenase, D subunit [Micavibrio aeruginosavorus ARL-13]
gi|347590648|gb|AEP09690.1| NADH dehydrogenase, D subunit [Micavibrio aeruginosavorus ARL-13]
Length = 406
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 156/286 (54%), Positives = 208/286 (72%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ E+ RILNH++ + T ALDVGA+TP W FEEREK MEFYER GAR+HA Y
Sbjct: 109 AQYIRVLYCELGRILNHLLNITTFALDVGAITPALWGFEEREKGMEFYERVCGARLHANY 168
Query: 105 VRPGGVALDIPIGLLDDIYHFI-STFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV+ D+P GLLDD+ ++ + A +D+++D++T NR++ QRT D+G+V+ E+ALN
Sbjct: 169 FRPGGVSQDLPAGLLDDMMDWVEKSVPAVIDDLDDLMTGNRIFKQRTVDIGVVTKEEALN 228
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GF+G MLRGSG+ WDLRK QPY+ Y + +FDIP+G G+ ++ M+EMRQSL+I++
Sbjct: 229 WGFTGPMLRGSGVAWDLRKSQPYEVYADMDFDIPVGKTGDCYARYLVRMEEMRQSLKIMK 288
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
QAI +MPGG V+ DD KI+ P R EMK GY VP G TY AVEAPKG
Sbjct: 289 QAIQQMPGGPVKVDDRKIAPPPRGEMKSSMEALIHHFKLYTEGYHVPAGETYAAVEAPKG 348
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG ++PYRC+I+APGF HL L+ + +G LAD+VA I
Sbjct: 349 EFGVYLVSDGGNRPYRCRIRAPGFLHLQGLDFMSRGHMLADVVANI 394
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYV+ M E ++LA EKLL I
Sbjct: 45 GEVVERADPHIGLLHRGTEKLIEYKTYMQAVPYFDRLDYVAPMNQEHAFALATEKLLGIT 104
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV++
Sbjct: 105 VPKRAQYIRVLYC 117
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E QIR +NFGPQHPAAHGVL L E+
Sbjct: 16 ETQIRPYTMNFGPQHPAAHGVLRLVLEM 43
>gi|346683366|ref|YP_004849328.1| NADH dehydrogenase subunit 7 [Cucumis sativus]
gi|325305586|gb|ADZ10755.1| NADH dehydrogenase subunit 7 [Cucumis sativus]
Length = 394
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 201/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TPF W FEEREK+ EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLFEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLR+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CPNQMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPY DR DYVS M E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
>gi|353526490|ref|YP_004927561.1| nad7 (mitochondrion) [Brassica carinata]
gi|404481666|ref|YP_006666000.1| NADH dehydrogenase subunit 7 (mitochondrion) [Raphanus sativus]
gi|335355021|gb|AEH43575.1| nad7 [Brassica carinata]
gi|400278290|dbj|BAM36214.1| NADH dehydrogenase subunit 7 (mitochondrion) [Raphanus sativus]
gi|400278320|dbj|BAM36243.1| NADH dehydrogenase subunit 7 (mitochondrion) [Raphanus sativus]
Length = 394
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSLRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DR DYVSMM E +S AVEKLLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSMMAQEHAHSSAVEKLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++QI+N NFGPQHPAAHGV L E+
Sbjct: 5 KRQIKNFTSNFGPQHPAAHGVSRLVLEMN 33
>gi|330813985|ref|YP_004358224.1| NADH-ubiquinone oxidoreductase subunit D [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487080|gb|AEA81485.1| NADH-ubiquinone oxidoreductase chain D [Candidatus Pelagibacter sp.
IMCC9063]
Length = 391
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EI RIL+HI+ + T ALDVGA+TP W FEEREK+M FYER SG+R+HA Y
Sbjct: 95 AQYIRVVFCEIGRILSHILNITTQALDVGALTPSLWGFEEREKLMVFYERVSGSRLHANY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV +D+P GL DDIY F TF ++++E +LT+NR++ QR D+GIVS ++AL++
Sbjct: 155 FRPGGVHIDLPTGLADDIYKFCETFPDVINDLETLLTDNRIFKQRNVDIGIVSKQEALDH 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PY+ Y F+F IP+G +G+ + ++EM++S+ I++Q
Sbjct: 215 GFSGVMLRGSGVPWDLRKSNPYECYNEFDFKIPVGKNGDCYDRYLCRIEEMKESISIMKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A+ KMP G V T + K+ P R EMK GY VP G YTAVEAPKGE
Sbjct: 275 ALQKMPEGPVMTANTKVGPPKRKEMKMSMEALINHFKLYTEGYHVPKGEVYTAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG++KPYRCKIKAPGF HL A+ + KG LAD+ A++
Sbjct: 335 FGVYLVSDGSNKPYRCKIKAPGFTHLQAMNYMIKGHMLADVPAVL 379
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIE+KTYTQA+PYFDRLDYV+ M E +++AVEKLL IE
Sbjct: 31 GEVIERADPHIGLLHRGTEKLIEHKTYTQAIPYFDRLDYVAPMNQEHAFAMAVEKLLKIE 90
Query: 363 VPLRAKYIRVMFT 375
VP+RA+YIRV+F
Sbjct: 91 VPIRAQYIRVVFC 103
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ K + M +NFGPQHPAAHGVL L E+
Sbjct: 1 MSKHTKTMNLNFGPQHPAAHGVLRLILEL 29
>gi|54606714|dbj|BAD66737.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. vulgaris]
gi|54606758|dbj|BAD66781.1| NADH dehydrogenase subunit 7 [Beta vulgaris subsp. vulgaris]
Length = 391
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA+TPF W FEEREK++EFYER GARMHA++
Sbjct: 95 AQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWAFEEREKLLEFYERVPGARMHASF 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 155 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLR+ PYD Y+ +FD+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 215 GFSGVMLRGPGVCWDLRRAAPYDVYDQLDFDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 275 CLNQMPSGMIKADDRKLCPPSRYRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 335 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 379
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 61/72 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E +S AVE+LLN E
Sbjct: 31 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAHSSAVERLLNCE 90
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 91 VPLRAQYIRVLF 102
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ +QI+N +NFGPQHPAAHGV L E+
Sbjct: 1 MNRQIKNFTLNFGPQHPAAHGVSRLVLEMN 30
>gi|88607271|ref|YP_505312.1| NADH dehydrogenase subunit D [Anaplasma phagocytophilum HZ]
gi|123494995|sp|Q2GJY9.1|NUOD_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88598334|gb|ABD43804.1| NADH dehydrogenase I, D subunit [Anaplasma phagocytophilum HZ]
Length = 395
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 148/280 (52%), Positives = 200/280 (71%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++F E+TR+LNH++ V ALD GA TP W+FEEREK++ FYERASGAR H+AY+RPGG
Sbjct: 104 VIFCELTRLLNHLLNVACQALDSGATTPLLWIFEEREKILSFYERASGARFHSAYIRPGG 163
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A D+P GLLDDI+ F + F LD V+D+LTEN +W QR ++G V+ + AL++GFSG
Sbjct: 164 LAADVPDGLLDDIHEFTNYFPKLLDSVDDLLTENSIWKQRNVEIGKVTKQQALDWGFSGP 223
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR GI WDLRK QPY+ Y+ +F +P+G++G+ ++ M E+R+SL I+EQ + +
Sbjct: 224 MLRACGIPWDLRKSQPYEIYDILDFKVPVGSNGDCYDRYLVRMAEIRESLYILEQCLRDI 283
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+TDD KI+ P R E+K GY VP G Y AVEAPKGEFGVY+
Sbjct: 284 PSGPVKTDDRKIAPPKREELKYSMEALIHHFKLFSEGYKVPEGEAYAAVEAPKGEFGVYI 343
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRC+I++PGFAHL A++ + +G LAD+ II
Sbjct: 344 VSDGTNKPYRCRIRSPGFAHLQAIDAMARGHMLADLPVII 383
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIGLLHRGTEKLIEYKTYT 330
SDG +KP A + I + S +++ IDPHIGLLHRGTEKLIEYKTY
Sbjct: 5 SDGYAKPMTINFGPQHPAAHGVMRLILEMS--GEVIERIDPHIGLLHRGTEKLIEYKTYL 62
Query: 331 QALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFT 375
QALPYFDRLDYVS M E YSL VE+LL EVP+RAKY+RV+F
Sbjct: 63 QALPYFDRLDYVSPMSQEHAYSLCVERLLGCEVPIRAKYLRVIFC 107
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+ M INFGPQHPAAHGV+ L E I RI HI
Sbjct: 10 KPMTINFGPQHPAAHGVMRLILEMSGEVIERIDPHI 45
>gi|371908004|emb|CAP18820.1| NADH dehydrogenase subunit 7, partial (mitochondrion)
[Chlorellidium tetrabotrys]
Length = 333
Score = 320 bits (819), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 157/271 (57%), Positives = 195/271 (71%), Gaps = 22/271 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 62 IRVLFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLIEFYERVSGARIHAAYFRP 121
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+PIGLLDDIY F F+ RLDE+E++LT NR+W R D+G+VS +DA ++GFS
Sbjct: 122 GGVSIDLPIGLLDDIYIFSKQFARRLDEIEEILTTNRIWKLRLVDIGVVSLKDAADHGFS 181
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGSG+ WDLR+ Q YD Y +F IP+GT+G+ + + E+R+SL I+ Q I
Sbjct: 182 GVMLRGSGLPWDLRQAQSYDAYSLIDFTIPVGTNGDCYDRYLCRISEIRESLGIIHQCIQ 241
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+ GEVR D I RS +K G VP G Y A EAPKGEFGV
Sbjct: 242 SIVSGEVR--DENIGPQKRSIIKSSIEALINHFKFYSEGLLVPSGEVYLATEAPKGEFGV 299
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGK 298
YLVS+GT+KPYRCKIKAPGF HL AL+ I K
Sbjct: 300 YLVSNGTNKPYRCKIKAPGFNHLQALDSITK 330
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 51/66 (77%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE K + QALPYFDRLDYVS++C E Y LAVE L+ + LR Y
Sbjct: 2 DPHIGLLHRGTEKLIENKNFLQALPYFDRLDYVSIICQEHTYVLAVEALVKAKPSLRCMY 61
Query: 370 IRVMFT 375
IRV+F
Sbjct: 62 IRVLFA 67
>gi|200004026|ref|YP_002221361.1| NADH dehydrogenase subunit 7 [Blastocystis sp. DMP/02-328]
gi|198385450|gb|ACH86044.1| NADH dehydrogenase subunit 7 [Blastocystis sp. DMP/02-328]
Length = 393
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 206/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNH++ +G+HALD+G+ T WLFEEREK++EFYER +GARMHA Y
Sbjct: 97 AQYIRVIFAEITRILNHLIGLGSHALDIGSTTVIIWLFEEREKLLEFYERVTGARMHANY 156
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV DIP+G L+D+Y F + F+ RL+++E++LT NR+W +R D+G+++ +DAL+
Sbjct: 157 FRPGGVRQDIPVGFLNDLYIFCTEFNERLNDMEELLTNNRIWRERLVDIGVITKQDALDL 216
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
+GV+LR +G+KWDLRK PYD Y +FDIP+GT+G+ +I ++EMRQS+RI+ Q
Sbjct: 217 NLTGVLLRSTGVKWDLRKTFPYDAYSKVDFDIPVGTNGDCFDRYIIRIEEMRQSVRIINQ 276
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
IN++ G ++TD+ KIS PS+ ++K G+ V Y ++EAPKGE
Sbjct: 277 CINQISEGPIKTDNYKISIPSKIQIKQSMESLIDHFKIFSEGFKVDANEVYCSIEAPKGE 336
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG+YLVSDG++KPYRC +K+ GF HL +++ + +G +AD+ +I
Sbjct: 337 FGIYLVSDGSNKPYRCHLKSSGFIHLQSVDYLTRGHLIADVTTVI 381
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIG LHRGTEKLIE KTY QALPYFDRLDY+SM+ NE CY LAVEKLL
Sbjct: 33 GEIVQNADPHIGFLHRGTEKLIENKTYLQALPYFDRLDYISMIENEHCYVLAVEKLLKCN 92
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 93 VPLRAQYIRVIF 104
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
+Q+++ +NFGPQHPA HGVL L E+
Sbjct: 5 RQLKSFTLNFGPQHPATHGVLRLIVEL 31
>gi|297493928|gb|ADI40686.1| NADH dehydrogenase Fe-S protein 2 [Cynopterus sphinx]
Length = 323
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 151/240 (62%), Positives = 183/240 (76%), Gaps = 21/240 (8%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 85 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 143
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 144 VSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIG 203
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ +FD+PIG+HG+ + ++E
Sbjct: 204 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDMYDQVDFDVPIGSHGDCYDRYLCRVEE 263
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 264 MRQSLRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 323
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 30 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 89
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 90 PPPRAQWIRVLF 101
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ + N+ +NFGPQHPAAHGVL L E++
Sbjct: 1 DTMVSNLTLNFGPQHPAAHGVLRLVMELS 29
>gi|339773267|gb|AEK01290.1| nad7 [Arabidopsis thaliana]
Length = 393
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 202/286 (70%), Gaps = 22/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 97 AQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 156
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 157 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 216
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 217 GFSGVMLRG-GVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYCIRIEEMRQSLRIIVQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK----------------GYPVPPGATYTAVEAPKG 263
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKG
Sbjct: 276 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESTSIHHFELYTEGFSVPASSTYTAVEAPKG 335
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 336 EFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 381
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG L RGTEKLIEYKTY QALPY DR +YVSMM E +S AVEKLLN E
Sbjct: 34 GEVVERAEPHIGSL-RGTEKLIEYKTYLQALPYSDRSEYVSMMAQEHAHSSAVEKLLNCE 92
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 93 VPLRAQYIRVLF 104
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++QI+N NFGPQHPAAHGV L E+
Sbjct: 5 KRQIKNFTSNFGPQHPAAHGVSRLVLEMN 33
>gi|404481695|ref|YP_006666126.1| NADH dehydrogenase subunit 7 (mitochondrion) [Malus x domestica]
gi|401661929|emb|CBX33385.1| NADH dehydrogenase subunit 7 (mitochondrion) [Malus x domestica]
Length = 394
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 201/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFEPYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AHL L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTII 382
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DR DYVSMM E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSMMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
>gi|153799810|gb|ABS50636.1| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
gi|153799812|gb|ABS50637.1| NADH dehydrogenase subunit 7 [Arabidopsis thaliana]
Length = 360
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 199/281 (70%), Gaps = 20/281 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 80 AQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 139
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 140 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 199
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 200 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDVPVGTRGDRYDRYCIRIEEMRQSLRIIVQ 259
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 260 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGE 319
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADI 305
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+
Sbjct: 320 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADV 360
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DR DYVSMM E +S AVEKLLN E
Sbjct: 16 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSMMAQEHAHSSAVEKLLNCE 75
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 76 VPLRAQYIRVLF 87
>gi|154253662|ref|YP_001414486.1| NADH dehydrogenase I subunit D [Parvibaculum lavamentivorans DS-1]
gi|218534437|sp|A7HY46.1|NUOD_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|154157612|gb|ABS64829.1| NADH dehydrogenase I, D subunit [Parvibaculum lavamentivorans DS-1]
Length = 392
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L++EI RIL H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y
Sbjct: 96 AQFIRVLYSEIGRILAHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P LL+DIY+F S LD++E ++T+NR++ QR D+G+VS E+AL +
Sbjct: 156 FRTGGVHRDLPPKLLEDIYNFCDPCSQVLDDLEGLITDNRIFKQRNVDIGVVSQEEALEW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG+ WDLR+ QPY+ Y +FDIP+G +G+ + M+EMRQSLRI++Q
Sbjct: 216 GFSGVMVRGSGMAWDLRRAQPYEVYSELDFDIPVGKNGDCYDRYLCRMEEMRQSLRIMKQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I MPGG V D K+ PSRSEMK GY VP G Y AVEAPKGE
Sbjct: 276 CIELMPGGPVHVLDGKVVPPSRSEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG +KPY+CKI+APG+AHL A++ + KG LAD+ AI+
Sbjct: 336 FGVYLVSDGGNKPYKCKIRAPGYAHLQAMDHLCKGHMLADVSAIL 380
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIEYKTY QA PYFDRLDYV+ M E + LA E+LL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEYKTYLQATPYFDRLDYVAPMNQEHAFVLAAERLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+++
Sbjct: 92 VPRRAQFIRVLYS 104
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+++RN +NFGPQHPAAHGVL L E+
Sbjct: 3 EQELRNYHLNFGPQHPAAHGVLRLVLEL 30
>gi|344923488|ref|ZP_08776949.1| NADH dehydrogenase subunit D [Candidatus Odyssella thessalonicensis
L13]
Length = 390
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 148/285 (51%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+ RI NH++ + T A+DVGA+TP + FEEREK+MEFYER GAR+HAAY
Sbjct: 94 AQYIRVLFSELGRITNHLLNITTFAMDVGAITPLLYGFEEREKIMEFYERVCGARLHAAY 153
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV D+ L+ DIY F +F +D++E++LTENR++ QRT D+G++SA+DAL++
Sbjct: 154 VRPGGVHQDMTPNLIADIYQFAQSFPKVIDDIEELLTENRIFKQRTVDIGVISAQDALDW 213
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+G +LR SG+ WDLRK QPY+ YE +FDIP G +G+ ++ + EMR+S+++V+Q
Sbjct: 214 GFTGPVLRASGVPWDLRKSQPYEIYEELDFDIPTGKYGDCYDRYLVRVAEMRESVKLVQQ 273
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I+KMP G + TDD K++ P R+EMK G+ VP G YTAVEAPKGE
Sbjct: 274 CIDKMPTGPIVTDDRKVTPPPRTEMKHSMEALIHHFKLYTEGFHVPAGEVYTAVEAPKGE 333
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+SD +++PYRCKI+APGFA L A + + +G LAD+ AI+
Sbjct: 334 FGVYLISDDSNRPYRCKIRAPGFAFLQATDFLSRGHMLADVTAIV 378
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIG LHRGTEKLIEYKTY QALPYFDRLDYV+ M E Y LAVEKLLN++
Sbjct: 30 GEVVERADPHIGFLHRGTEKLIEYKTYLQALPYFDRLDYVAPMNQEHAYILAVEKLLNVK 89
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV+F+
Sbjct: 90 VPSRAQYIRVLFS 102
>gi|384263105|ref|YP_005418293.1| NADH-quinone oxidoreductase subunit D [Rhodospirillum photometricum
DSM 122]
gi|378404207|emb|CCG09323.1| NADH-quinone oxidoreductase subunit D [Rhodospirillum photometricum
DSM 122]
Length = 391
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 198/287 (68%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LF EITRI+NHIM + ALDVGAMTP + FE+RE ++EF ERASGARMHA
Sbjct: 93 PRAQYLRTLFNEITRIINHIMNTTSMALDVGAMTPLLYGFEQREHLLEFSERASGARMHA 152
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
A+ RPGGVA D+P LLDDI F F A LD+VE +L +NR++ QRT D+G V+ E AL
Sbjct: 153 AWFRPGGVARDVPTDLLDDILKFCDGFPAYLDDVEALLDDNRIFKQRTVDIGKVTVEQAL 212
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GF+G +LRG G+ WDLRK QPYD Y + +FDIP G +G+ ++ M E RQSLRI+
Sbjct: 213 DWGFTGPVLRGCGVPWDLRKAQPYDAYADMDFDIPTGANGDCYDRYLVRMAEQRQSLRII 272
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q I KMP G V+T D K++ P R+ MK G VP G TYTAVEA
Sbjct: 273 RQCIEKMPDGPVKTQDHKVTPPPRAAMKNSMEALIHHFKLFTEGVRVPAGETYTAVEAAT 332
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGV+LVSDG+SKPYRCKI++PG+ HL L+ + +G LAD+VA I
Sbjct: 333 GEFGVFLVSDGSSKPYRCKIRSPGYVHLQGLDLMSRGHMLADVVANI 379
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIE+K+Y QA+PYFDRLDY + E + LAVEKLL IE
Sbjct: 31 GEIVERADPHIGLLHRGTEKLIEHKSYVQAIPYFDRLDYACPLNQEHAFVLAVEKLLGIE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA+Y+R +F
Sbjct: 91 VPPRAQYLRTLFN 103
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++ +I++ +NFGPQHPAAHGVL L E++
Sbjct: 1 MQTEIKSYTMNFGPQHPAAHGVLRLVLELS 30
>gi|247589125|ref|YP_002608197.2| NADH dehydrogenase subunit 7 [Carica papaya]
gi|243010640|gb|ACB20486.2| NADH dehydrogenase subunit 7 (mitochondrion) [Carica papaya]
Length = 394
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 201/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGLIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DR DYVSMM E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSMMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
>gi|371908020|emb|CAP18828.1| NADH dehydrogenase subunit 7, partial (mitochondrion)
[Pleurochloridella botrydiopsis]
Length = 338
Score = 317 bits (811), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 153/267 (57%), Positives = 197/267 (73%), Gaps = 22/267 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITR+LNH++AVG HA+DVGA+TPF W FEEREK++EFYER SGAR+HAAY+RP
Sbjct: 71 IRVLFAEITRLLNHLLAVGCHAMDVGAITPFLWAFEEREKLIEFYERVSGARIHAAYIRP 130
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+ D+P GL+ DIY FI F RLDE+E++LT NR+W QR D+G VSA ALN+ FS
Sbjct: 131 GGVSGDLPKGLVQDIYIFILFFPTRLDEIEELLTTNRIWKQRLVDIGKVSAAQALNWAFS 190
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR+ PYD Y FD+P+G+ G+ ++ ++E+RQS+ I+ Q +N
Sbjct: 191 GVILRGSGILWDLRRSIPYDVYPLLSFDVPLGSKGDCYDRYLLRVQEIRQSVSIILQCLN 250
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
++ G VR D ++S PSR +MK GY + PG TYTA EAPKGEFG+
Sbjct: 251 QISEGPVR--DERLSPPSRQKMKSSMEALISHFKFYTEGYTIAPGQTYTATEAPKGEFGI 308
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALE 294
LVSDGTS+ YRCKIKAPG+ HL AL+
Sbjct: 309 SLVSDGTSRLYRCKIKAPGYNHLQALD 335
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 58/70 (82%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPHIGLLHRGTEKLIEYKT+TQALPY DRLDYVS++ E YSLAVE+L NI VPL
Sbjct: 7 VCSADPHIGLLHRGTEKLIEYKTFTQALPYLDRLDYVSIIAQEHTYSLAVEELANITVPL 66
Query: 366 RAKYIRVMFT 375
RA YIRV+F
Sbjct: 67 RAIYIRVLFA 76
>gi|200004054|ref|YP_002221388.1| NADH dehydrogenase subunit 7 [Blastocystis sp. NandII]
gi|198385476|gb|ACH86069.1| NADH dehydrogenase subunit 7 [Blastocystis sp. NandII]
Length = 393
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRI+NH++ +G+HALD+G+ T WLFEEREK++EFYERA+GARMH Y
Sbjct: 97 AQYIRVIFAEITRIINHLIGLGSHALDIGSTTVIIWLFEEREKLLEFYERATGARMHGNY 156
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV DIP+GLL+DIY F + F+ RL+++E++LT NR+W +R D+G+++ +DAL+
Sbjct: 157 FRPGGVRQDIPLGLLNDIYIFCNEFNERLNDMEELLTNNRIWRERLVDIGVITKQDALDL 216
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
+GV+LR +GIKWDLRK PYD Y +F++P+G++G+ V+ ++EMRQS+ I+ Q
Sbjct: 217 NLTGVLLRSTGIKWDLRKTFPYDAYNRVKFEVPVGSNGDCFDRYVMRIEEMRQSIYIISQ 276
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
IN++ G ++TD+ KIS PS+ ++K G+ V P Y ++EAPKGE
Sbjct: 277 CINQISEGPIKTDNYKISIPSKIQIKQSMESLIDHFKIFSEGFKVEPNEVYCSIEAPKGE 336
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG+YLVSDG++KPYRC +K+ GF HL +L+ + +G +AD+ +I
Sbjct: 337 FGIYLVSDGSNKPYRCHLKSSGFIHLQSLDYLTRGHLIADVTTVI 381
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIG LHRGTEKLIE KTY QALPYFDRLDY+SM+ NE CY LAVEKLL +
Sbjct: 33 GEIVQKADPHIGFLHRGTEKLIENKTYLQALPYFDRLDYISMLENEHCYVLAVEKLLQCK 92
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 93 VPLRAQYIRVIF 104
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
+Q+++ +NFGPQHPA HGVL L E+
Sbjct: 5 RQLKSFTLNFGPQHPATHGVLRLIIEL 31
>gi|391223970|ref|YP_006460195.1| NADH dehydrogenase subunit 7 (mitochondrion) [Blastocystis sp.
subtype 3]
gi|372861980|gb|AEX98118.1| NADH dehydrogenase subunit 7 (mitochondrion) [Blastocystis sp.
subtype 3]
gi|372862008|gb|AEX98145.1| NADH dehydrogenase subunit 7 (mitochondrion) [Blastocystis sp.
subtype 3]
gi|372862036|gb|AEX98172.1| NADH dehydrogenase subunit 7 (mitochondrion) [Blastocystis sp.
subtype 3]
Length = 393
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNH++ +G+HALD+G+ T WLFEEREK++EFYER +GARMHA Y
Sbjct: 97 AQYIRVIFAEITRILNHLIGLGSHALDIGSTTVIIWLFEEREKLLEFYERVTGARMHANY 156
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P G L+D+Y F F+ RL+++E++LT NR+W +R D+G+++ +DAL+
Sbjct: 157 FRPGGVRQDLPAGFLNDLYIFCVEFNERLNDMEELLTNNRIWRERLVDIGVITKQDALDL 216
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
+GV+LR +G+KWDLRK PYD Y+ +FDIP+GT+G+ VI ++EMRQS+RI+ Q
Sbjct: 217 NLTGVLLRSTGVKWDLRKTFPYDAYDKVDFDIPVGTNGDCFDRYVIRIEEMRQSIRIISQ 276
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
IN++ G +++D+ KIS PS+ ++K G+ V Y ++EAPKGE
Sbjct: 277 CINQISEGPIKSDNYKISIPSKVQIKQSMESLIDHFKIFSEGFKVEANEVYCSIEAPKGE 336
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG++KPYRC +K+ GF HL +++ + +G +AD+ +I
Sbjct: 337 FGVYLVSDGSNKPYRCHLKSSGFIHLQSVDYLTRGHLIADVTTVI 381
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIG LHRGTEKLIE KTY QALPYFDRLDY++M+ NE CY LAVEKLL
Sbjct: 33 GEIVQKADPHIGFLHRGTEKLIENKTYLQALPYFDRLDYIAMLENEHCYVLAVEKLLKCN 92
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 93 VPLRAQYIRVIF 104
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
+Q+++ +NFGPQHPA HGVL L E+
Sbjct: 5 RQLKSFTLNFGPQHPATHGVLRLILEL 31
>gi|386799313|ref|YP_006291823.1| nad7 gene product (mitochondrion) [Daucus carota subsp. sativus]
gi|374082016|gb|AEY81208.1| NADH dehydrogenase subunit 7 (mitochondrion) [Daucus carota subsp.
sativus]
Length = 394
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 199/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI FS+R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSSTQQFSSRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
NKMP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CPNKMPSGMIKADDRKLCPPSRGRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DRLDYVS M E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRLDYVSTMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+QI+N NFGPQHPAAHGV L E+
Sbjct: 6 EQIKNFTSNFGPQHPAAHGVSRLVLEMN 33
>gi|296536153|ref|ZP_06898281.1| NADH-quinone oxidoreductase subunit D [Roseomonas cervicalis ATCC
49957]
gi|296263524|gb|EFH10021.1| NADH-quinone oxidoreductase subunit D [Roseomonas cervicalis ATCC
49957]
Length = 405
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEI+RILNHI+ + T+ALDVGA TP W FE+RE ++EFY+ SG+ HA Y
Sbjct: 109 AQYIRVLFAEISRILNHILNITTYALDVGATTPSLWGFEQREILLEFYDATSGSHYHANY 168
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGVA D+P GL D I + F +D+VE +LT NR++ QRT D+G+++AE+A+ +
Sbjct: 169 FRAGGVAKDLPAGLTDRIAGWAEQFPKFVDDVERLLTGNRIFKQRTVDIGVMTAEEAMAW 228
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG +R SG WDLR+ QPYD Y+ EF+IP+G+HG+ ++ + EMR+SL+I++Q
Sbjct: 229 GFSGPCIRASGCAWDLRRSQPYDVYDQMEFEIPVGSHGDCYERYLVRIAEMRESLKIIKQ 288
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ +MPGG ++ D KI+ P R+EMK GY VP G+TYTAVEAPKGE
Sbjct: 289 CLAQMPGGPIKVQDSKIAPPKRAEMKRSMEALIHHFKLYSEGYHVPEGSTYTAVEAPKGE 348
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LV+DGT++PYRCKI+APGFAHL A+EK+ KG LAD V++I
Sbjct: 349 FGVFLVADGTNRPYRCKIRAPGFAHLQAMEKLSKGHMLADAVSVI 393
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+K+Y QALPYFDRLDYV+ M E C++LA EKLL IE
Sbjct: 45 GEVVERADPHIGLLHRGTEKLIEHKSYLQALPYFDRLDYVAPMAQEHCFALATEKLLGIE 104
Query: 363 VPLRAKYIRVMFT 375
P+RA+YIRV+F
Sbjct: 105 APIRAQYIRVLFA 117
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I + INFGPQHPAAHGVL L E+
Sbjct: 18 EIDSHTINFGPQHPAAHGVLRLILEM 43
>gi|407775149|ref|ZP_11122445.1| NADH dehydrogenase, D subunit [Thalassospira profundimaris WP0211]
gi|407282097|gb|EKF07657.1| NADH dehydrogenase, D subunit [Thalassospira profundimaris WP0211]
Length = 392
Score = 315 bits (806), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+AEI RILNHI+ + ALDVGAMTP W FEEREK+MEFYERA GAR+HA Y
Sbjct: 96 AQYIRVLYAEIGRILNHILNLTAFALDVGAMTPLLWGFEEREKLMEFYERACGARLHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLLDDI + + + + + +LT NR++ QRT D+GIVSAE+AL++
Sbjct: 156 FRPGGVAADLPAGLLDDIDAWADQYEIFMKDFDRVLTGNRIFKQRTVDIGIVSAEEALDW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+G +R SG+ WDLRK QPYD YE F+FDIP+G +G+ ++ +EM QSL+I++Q
Sbjct: 216 GFTGPNIRASGLAWDLRKSQPYDSYEEFDFDIPVGKNGDCYDRFLVRFEEMWQSLKIIKQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
AI MP G V ++ K++ PSR+EMK G+ VP G Y VEAPKGE
Sbjct: 276 AIKNMPDGPVIVENNKVAPPSRAEMKRSMEALIHHFKLFTEGFHVPAGECYATVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+++PYRCKI+APGF HL ++ + KG LAD+VA I
Sbjct: 336 FGVYLVSDGSNRPYRCKIRAPGFPHLQGIDFMSKGHMLADVVANI 380
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QA PYFDRLDYV+ M E Y LA+EKL+ +E
Sbjct: 32 GEVVERSDPHIGLLHRGTEKLIEYKTYIQATPYFDRLDYVAPMNQEHAYCLAIEKLMGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV++
Sbjct: 92 VPKRAQYIRVLYA 104
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 24/28 (85%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++I+NM +NFGPQHPAAHGVL L E+
Sbjct: 3 EQKIKNMTMNFGPQHPAAHGVLRLVLEM 30
>gi|83592893|ref|YP_426645.1| NADH dehydrogenase subunit D [Rhodospirillum rubrum ATCC 11170]
gi|386349624|ref|YP_006047872.1| NADH dehydrogenase subunit D [Rhodospirillum rubrum F11]
gi|123526695|sp|Q2RU37.1|NUOD_RHORT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|83575807|gb|ABC22358.1| NADH dehydrogenase I, D subunit [Rhodospirillum rubrum ATCC 11170]
gi|346718060|gb|AEO48075.1| NADH dehydrogenase subunit D [Rhodospirillum rubrum F11]
Length = 392
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 154/287 (53%), Positives = 199/287 (69%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LF E+TR++NHIM + ALD+GAMTP + FEERE ++EF ERASGARMHA
Sbjct: 94 PRAQYLRTLFNEVTRLINHIMNTTSMALDIGAMTPLLYGFEEREHLLEFSERASGARMHA 153
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
A+ RPGGVA D+P LL+DI F +F LD+VE +L ENR++ QRT D+G V+A+ AL
Sbjct: 154 AWFRPGGVARDVPPDLLEDILKFCDSFPKYLDDVEHLLDENRIFKQRTVDIGKVTAQQAL 213
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GF+G +LRG G+ WDLRK QPYD Y +FDIP G +G+ ++ M E RQS+RI+
Sbjct: 214 DWGFTGPVLRGCGVPWDLRKSQPYDAYAAMDFDIPTGANGDCYDRYLVRMAEQRQSIRIM 273
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q I KMP G V+ D K++ PSR EMK G+ VP G TYTAVEA
Sbjct: 274 RQCIEKMPDGPVKAVDHKVTPPSRGEMKSSMEALIHHFKLFTEGFKVPEGETYTAVEAAT 333
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDGT++PYRCKI++PG+ HL L+ + +G LAD+VA I
Sbjct: 334 GEFGVYLVSDGTNRPYRCKIRSPGYVHLQGLDLMSRGHMLADVVANI 380
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIEYKTY QALPYFDRLDY M E Y LAVEKLL I
Sbjct: 32 GEVIERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYACPMNQEHAYVLAVEKLLGIT 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+Y+R +F
Sbjct: 92 VPPRAQYLRTLFN 104
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ +I++ +NFGPQHPAAHGVL L E++
Sbjct: 2 AQTEIKSYTLNFGPQHPAAHGVLRLVLELS 31
>gi|365855585|ref|ZP_09395630.1| NADH dehydrogenase subunit D [Acetobacteraceae bacterium AT-5844]
gi|363719012|gb|EHM02331.1| NADH dehydrogenase subunit D [Acetobacteraceae bacterium AT-5844]
Length = 405
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEI+RILNHI+ + T+ALDVGA TP W FE+RE ++E YE ASG+ HA Y
Sbjct: 109 AQYIRVMFAEISRILNHILNITTYALDVGATTPSLWGFEQREVLLEIYEAASGSHYHANY 168
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA DIP GL++ I + F A +D++E +LT NR++ QRT D+GI++AE A+ +
Sbjct: 169 VRPGGVAKDIPAGLIEKIERWSEKFPAFVDDLERLLTGNRIFKQRTVDIGIMTAEQAMEW 228
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG +R SG WDLR+ QPYD Y+ EF+IP+G+HG+ ++ + EMR+S +I++Q
Sbjct: 229 GFSGPCIRASGCAWDLRRSQPYDIYDQLEFEIPVGSHGDCYERYLVRIAEMRESHKIIKQ 288
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I +MPGG V+ D KI P R EMK GY VP G+TY+ VEAPKGE
Sbjct: 289 CIQQMPGGPVKLQDSKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPEGSTYSVVEAPKGE 348
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYRC I+APGFAHL A+E + KG LAD V++I
Sbjct: 349 FGVYLVADGTNKPYRCHIRAPGFAHLQAMEVLSKGHMLADAVSVI 393
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYV+ M E ++LA E+LL +E
Sbjct: 45 GEVVERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVAPMAQEHAFALATERLLGVE 104
Query: 363 VPLRAKYIRVMFT 375
P+RA+YIRVMF
Sbjct: 105 APIRAQYIRVMFA 117
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 33 NMVINFGPQHPAAHGVLLLFAEI 55
+ INFGPQHPAAHGVL L E+
Sbjct: 21 SHTINFGPQHPAAHGVLRLILEL 43
>gi|403311568|gb|AFR34316.1| NADH dehydrogenase subunit 7 (mitochondrion) [Glycine max]
Length = 394
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 200/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH++A+ THA+DVGA TP W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHLLALTTHAMDVGASTPSLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSLRIILQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
NK+P G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CPNKIPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DRLDYVS M E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRLDYVSTMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 30 QIRNMVINFGPQHPAAHGV 48
QI+N NFGPQHPAAHGV
Sbjct: 7 QIKNFTSNFGPQHPAAHGV 25
>gi|220924008|ref|YP_002499310.1| NADH dehydrogenase I subunit D [Methylobacterium nodulans ORS 2060]
gi|219948615|gb|ACL59007.1| NADH dehydrogenase I, D subunit [Methylobacterium nodulans ORS
2060]
Length = 396
Score = 313 bits (803), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 157/283 (55%), Positives = 204/283 (72%), Gaps = 24/283 (8%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L+ EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y RPGGV
Sbjct: 102 LYCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGV 161
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
D+P GLLDDI F TF +D++++++ NR++ QR D+GIV+A+ A+ +GFSGVM
Sbjct: 162 HQDLPAGLLDDIEAFCETFPQVVDDLDELVIGNRIFKQRNVDIGIVTADQAMAWGFSGVM 221
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM- 224
+RGSGI WDLRK QPY+ YE EF+IP+G +G+ VI M+EMRQS+RI++Q I K+
Sbjct: 222 VRGSGIPWDLRKAQPYESYEEMEFEIPVGKNGDTYDRQVIRMEEMRQSVRIMKQCIAKLR 281
Query: 225 -PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFG 266
P G+ V T D K++ PSR EMK G+ VP G Y AVEAPKGEFG
Sbjct: 282 APDGQGPVATQDGKVAPPSRREMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 341
Query: 267 VYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VYLV+DGT+KPYRCKI+APGFAHL A++ + +G LAD+ II
Sbjct: 342 VYLVADGTNKPYRCKIRAPGFAHLQAMDWMCRGHMLADVSCII 384
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIEYKTY QA PYFDRLDYV+ M E + LAVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEYKTYLQATPYFDRLDYVAPMNQEHAFCLAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP RAK IR ++
Sbjct: 92 VPRRAKLIRTLYC 104
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHSIRNFSINFGPQHPAAHGVLRLVLEL 30
>gi|58042475|gb|AAW63677.1| NADH dehydrogenase subunit 7 [Piper betle]
Length = 363
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 149/285 (52%), Positives = 198/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A THA+DVGA TPF W FEEREK++EF+ER SGARMHA++
Sbjct: 78 AQYIRVLFREITRISNHSLASTTHAMDVGASTPFLWAFEEREKLLEFHERVSGARMHASF 137
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+G DI F++R+DE E+M T NR+W QR D+G V+A+ A ++
Sbjct: 138 IRPGGVAQDLPLGSCRDIDSSTQQFASRIDESEEMSTSNRIWKQRLVDIGTVTAQQAKDW 197
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLR+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 198 GFSGVMLRGRGVCWDLRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 257
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 258 CPNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGE 317
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AHL L+ + K AD+V II
Sbjct: 318 FGVFLVSNGSNRPYRRKIRAPGSAHLQGLDSMSKHHMPADVVTII 362
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKT+ QALPY DR DYVSMM E +S AVE LLN E
Sbjct: 14 GEVVERAEPHIGSLHRGTEKLIEYKTFLQALPYSDRSDYVSMMAQEHAHSSAVETLLNCE 73
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 74 VPLRAQYIRVLF 85
>gi|323149047|ref|YP_004222829.1| NADH dehydrogenase subunit 7 [Vigna radiata]
gi|308206753|gb|ADO19890.1| NADH dehydrogenase subunit 7 [Vigna radiata]
Length = 394
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/285 (52%), Positives = 200/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH++A+ THA+DVGA TP W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHLLALTTHAMDVGASTPSLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSMRIIWQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
NK+P G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CPNKIPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DRLDYVS M E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRLDYVSTMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 30 QIRNMVINFGPQHPAAHGV 48
QI+N NFGPQHPAAHGV
Sbjct: 7 QIKNFTSNFGPQHPAAHGV 25
>gi|407768983|ref|ZP_11116360.1| NADH dehydrogenase, D subunit [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407287903|gb|EKF13382.1| NADH dehydrogenase, D subunit [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 392
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+AE+ RILNH++ + ALDVGAMTP W FEEREK+MEFYERA GAR+HA Y
Sbjct: 96 AQYIRVLYAEMGRILNHLLNLTAFALDVGAMTPLLWGFEEREKLMEFYERACGARLHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL DI + F + + + +LT NR++ QRT D+GIVS E+AL++
Sbjct: 156 FRPGGVAADLPAGLLADIDAWCDQFPKFVKDFDRILTGNRIFKQRTVDIGIVSPEEALDW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
F+G +R SG+ WDLRK QPYD YE+F+FDIPIG +G+ ++ +EM QSLRI++Q
Sbjct: 216 AFTGPNIRASGMAWDLRKSQPYDSYEDFDFDIPIGKNGDCYDRFLVRFEEMNQSLRIMKQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
AI +MP G V ++ K++ PSRSEMK G+ VP G Y AVEAPKGE
Sbjct: 276 AIKEMPDGAVIVENNKVAPPSRSEMKRSMEALIHHFKLFTEGFHVPAGECYAAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+SDG+++PYRCKI+APGF HL ++ + KG LAD+VA I
Sbjct: 336 FGVYLISDGSNRPYRCKIRAPGFPHLQGIDFMSKGHMLADVVANI 380
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIEYKTY QA PYFDRLDYV+ M E Y LA+EKL+ +E
Sbjct: 32 GEVIERADPHIGLLHRGTEKLIEYKTYIQATPYFDRLDYVAPMNQEHAYCLAIEKLMGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV++
Sbjct: 92 VPKRAQYIRVLYA 104
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 24/28 (85%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++I+NM +NFGPQHPAAHGVL L E+
Sbjct: 3 EQKIKNMTMNFGPQHPAAHGVLRLVLEM 30
>gi|301353220|ref|YP_003795217.1| NADH dehydrogenase subunit 7 [Proteromonas lacertae]
gi|290573168|gb|ADD46355.1| NADH dehydrogenase subunit 7 [Proteromonas lacertae]
Length = 392
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/282 (52%), Positives = 198/282 (70%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++F+E+TR+LNH++AVG+ ALD+GAMT WLFEEREK++EFYER SGARMHA ++RP
Sbjct: 99 IRVIFSELTRLLNHLIAVGSAALDLGAMTVMLWLFEEREKILEFYERVSGARMHANFIRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P+GLL+DIY RLDE E++LT NR+W R DVG+V+ +AL GFS
Sbjct: 159 GGVREDLPLGLLEDIYDLCLRLPHRLDEAEELLTNNRIWRNRLVDVGVVTKNEALKNGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLR +G+ WDLRK PY+ Y+ F +P+GT+G+ ++ M+EMRQS+ I+ Q +
Sbjct: 219 GVMLRSTGLLWDLRKNFPYEVYDKINFSVPVGTNGDCYDRYIMRMEEMRQSISIILQCLQ 278
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G ++ + KI+ P RS MK G+ VP G T+T +EAPKGE GV
Sbjct: 279 NIPEGPIKIANNKIAIPLRSSMKNSMEALIDHFKIFSEGFYVPAGETFTCIEAPKGELGV 338
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVS G +KPYRC +KAPG+ HL +E + KG FLADIVAII
Sbjct: 339 YLVSIGENKPYRCHVKAPGYTHLQGVELLSKGHFLADIVAII 380
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 64/73 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIG LHRGTEKLIE+KTY QALP+FDRLDY++MMCNE CYSLAVE LL+ +
Sbjct: 32 GEVVFQADPHIGFLHRGTEKLIEHKTYLQALPHFDRLDYIAMMCNEHCYSLAVETLLHTD 91
Query: 363 VPLRAKYIRVMFT 375
+PLRAKYIRV+F+
Sbjct: 92 IPLRAKYIRVIFS 104
>gi|219551893|gb|ACL26691.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Cucumis
sativus]
Length = 344
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/274 (53%), Positives = 195/274 (71%), Gaps = 20/274 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TPF W FEEREK+ EFYER SGARMHA++
Sbjct: 66 AQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLFEFYERVSGARMHASF 125
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 126 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 185
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLR+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 186 GFSGVMLRGPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 245
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 246 CPNQMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGE 305
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGK 298
FGV+LVS+G+++PYR KI+APG AH L+ + K
Sbjct: 306 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSK 339
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPY DR DYVS M E +S AVE+LLN E
Sbjct: 2 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEHAHSSAVERLLNCE 61
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 62 VPLRAQYIRVLF 73
>gi|58700075|ref|ZP_00374615.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58533408|gb|EAL57867.1| NADH dehydrogenase I, D subunit [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 272
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/260 (56%), Positives = 192/260 (73%), Gaps = 20/260 (7%)
Query: 70 LDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTF 129
LDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG+A D+P L++DI FI F
Sbjct: 1 LDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGIAADVPEDLIEDIAKFIEQF 60
Query: 130 SARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGY 189
+D+V+++LTENR+W QRT + +S + AL++GFSG MLR +G+ WDLRK QPY+ Y
Sbjct: 61 PKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIY 120
Query: 190 ENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEM 244
+ +FDIPIG +G+ ++ M E+RQS+ +V+Q I KMP G+++T+D KIS PSR+EM
Sbjct: 121 DQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKMPEGQIKTEDRKISPPSRAEM 180
Query: 245 K---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAH 289
K GY VP G Y VEAPKGEFGVY+VSDGT++PYRC+I+APGFAH
Sbjct: 181 KKSMEALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYIVSDGTNRPYRCRIRAPGFAH 240
Query: 290 LAALEKIGKGSFLADIVAII 309
L AL+ + KG LAD+ AII
Sbjct: 241 LQALDFMAKGHMLADVAAII 260
>gi|381167341|ref|ZP_09876549.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Phaeospirillum molischianum DSM 120]
gi|380683649|emb|CCG41361.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Phaeospirillum molischianum DSM 120]
Length = 409
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/287 (51%), Positives = 201/287 (70%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + L+ EI R+LNH++++ ++ DVG MTP W FEER+K+MEFYERA GAR+HA
Sbjct: 111 PRAQYIRTLYCEIGRVLNHLISICSYIFDVGGMTPMLWGFEERDKLMEFYERACGARLHA 170
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
Y RPGGVA D+P L DDI + TF + LD++E ++TENR++ QRT D+GIV+ E AL
Sbjct: 171 NYFRPGGVAADLPQDLFDDIGAWTQTFPSALDDIESLVTENRIFKQRTVDIGIVTPEQAL 230
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GF+G LR SGI WDLRK QPY+ Y+ EFDIP+G++G+ ++ + EMRQS+ ++
Sbjct: 231 DWGFTGPNLRASGIAWDLRKAQPYEVYDQLEFDIPVGSNGDCYDRFLVRVLEMRQSVLLI 290
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q + +MPGG V+ D+ K++ P R+EMK G+ VP G Y AVEAPK
Sbjct: 291 RQCLERMPGGPVKVDNNKVTPPPRAEMKRSMEALIHHFKLFTEGFHVPAGEVYAAVEAPK 350
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEF VYL+SDG+ KPYRCKI+ PGF +L AL+ + +G LAD+VA I
Sbjct: 351 GEFAVYLISDGSGKPYRCKIRPPGFVNLQALDMMSRGHMLADVVANI 397
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDY+ M E + LA E+LL +E
Sbjct: 49 GEVVERADPHIGLLHRGTEKLIEHKTYLQAVPYFDRLDYIGTMNQEHAFVLATERLLGLE 108
Query: 363 VPLRAKYIRVMFT 375
+P RA+YIR ++
Sbjct: 109 LPPRAQYIRTLYC 121
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 25 VPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V E +I +NFGPQHPAAHGVL L E++
Sbjct: 17 VMAETRIETYSLNFGPQHPAAHGVLRLILEMS 48
>gi|254500691|ref|ZP_05112842.1| NADH dehydrogenase (quinone), D subunit [Labrenzia alexandrii
DFL-11]
gi|222436762|gb|EEE43441.1| NADH dehydrogenase (quinone), D subunit [Labrenzia alexandrii
DFL-11]
Length = 394
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/284 (54%), Positives = 201/284 (70%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
V +L++EI RIL+H++ V T A+DVGA+TP W FE RE++M FYERA GARMHAAYVRP
Sbjct: 99 VRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEPREELMVFYERACGARMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI+ F F LD++E +LT+NR++ QR D+G+V +DA +GFS
Sbjct: 159 GGVHQDLPRDLLDDIWDFCDPFLQTLDDIEGLLTDNRIFKQRNVDIGVVDLDDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M EMRQS+RI++Q +
Sbjct: 219 GVMVRGSGAPWDLRKSQPYECYSELDFDIPIGKNGDCYDRYLIRMDEMRQSIRIMKQCLE 278
Query: 223 KMP--GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G V + D KI P R EMK GY VPPG Y AVEAPKGEF
Sbjct: 279 KLTVETGPVSSADGKIVPPKRGEMKRSMESLIHHFKLYTEGYHVPPGEVYAAVEAPKGEF 338
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLV+DGT+KPYRCKIKAPG+AHL+A++ + +G LAD+ A++
Sbjct: 339 GVYLVADGTNKPYRCKIKAPGYAHLSAMDFVCRGHQLADVSAVL 382
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVE++L IE
Sbjct: 32 GEVVTRVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFALAVERMLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + +RV+++
Sbjct: 92 VPKRGQLVRVLYS 104
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
E Q+RN INFGPQHPAAHGVL L E +TR+ HI
Sbjct: 3 EAQVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHI 42
>gi|357622677|gb|EHJ74103.1| NADH-ubiquinone oxidoreductase fe-s protein 2 [Danaus plexippus]
Length = 457
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/299 (51%), Positives = 199/299 (66%), Gaps = 23/299 (7%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + +L +E++RI NH++ + LD G +TPFFW+ EEREK+ E ER GAR+H
Sbjct: 159 PRAQAIRVLCSELSRIANHLLNISGTILDAGGITPFFWMCEEREKIYELSERLCGARIHC 218
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AYVRPGGV+ DIPIG +DDI+ F R DE ED+ T NRL+ RT VG+V+A DA+
Sbjct: 219 AYVRPGGVSQDIPIGFMDDIHEFCMKLGERCDETEDIATGNRLYYARTAGVGVVTAHDAI 278
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
+GFSG MLR +G+KWDLR PYDGY+ ++FD+PIGT G+ ++ + E+RQS+RI+
Sbjct: 279 YHGFSGPMLRSTGVKWDLRIAFPYDGYDLYDFDVPIGTFGDSFDRHLLRLMELRQSIRII 338
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q I+ MP GEVRTDD K+S P RSEMK GY VPPGATYT VE PK
Sbjct: 339 NQVIDTMPEGEVRTDDSKVSPPLRSEMKTSMEALIHHFKLCSEGYVVPPGATYTGVECPK 398
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADI---VAIIDPHIGLLHR 318
GE G Y+V DGTSKPYR I++ + HLA + +GKG LADI +A ID G + R
Sbjct: 399 GELGFYMVGDGTSKPYRVGIRSCSYNHLAGIAFMGKGLLLADISILIATIDIVFGDIDR 457
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIG LHR +EKL+E+K YTQ+LPY DR DYVS + NEQ +++AVE+LLNIE
Sbjct: 97 GELVVRADPHIGFLHRASEKLMEHKHYTQSLPYVDRFDYVSTLANEQGFAIAVERLLNIE 156
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+ +
Sbjct: 157 VPPRAQAIRVLCS 169
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V ++ + K+ + ++ + PVE+++RNM INFGPQHPAAHGVL L E+
Sbjct: 44 VGIFTTEAMEKYYRVIYHGRVRPVERKLRNMWINFGPQHPAAHGVLRLILEL 95
>gi|46202359|ref|ZP_00208487.1| COG0649: NADH:ubiquinone oxidoreductase 49 kD subunit 7
[Magnetospirillum magnetotacticum MS-1]
Length = 392
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 151/279 (54%), Positives = 197/279 (70%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L+ EI RILNH++ V DVG MTP + FEEREK+MEFYER GAR+HA Y RPGGV
Sbjct: 102 LYDEIGRILNHLLNVTAFIFDVGGMTPLLYGFEEREKLMEFYERVCGARLHANYYRPGGV 161
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DI + TF A LD++E + T+NR++ QR D+G V+AE AL++GF+G
Sbjct: 162 AADLPNGLLEDIAEWCETFPAVLDDIETLATDNRIFKQRVVDIGTVTAEQALDWGFTGPN 221
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LR SGI WDLRK QPY+ Y+ EFDIP+G +G+ ++ + EMR+S++I++Q I KMP
Sbjct: 222 LRASGIAWDLRKAQPYEVYDQMEFDIPVGKNGDGYDRYLVRVLEMRESIKIMKQCIAKMP 281
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GG VR +D K++ P R+EMK G+ VP G TYTA+EAPKGEF VYL+
Sbjct: 282 GGPVRIEDNKVTPPKRAEMKTSMESLIHHFKLFTEGFRVPVGETYTAIEAPKGEFAVYLI 341
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+DGT KPYRCKI+ PG+ HL AL+ + KG LAD+VA I
Sbjct: 342 ADGTGKPYRCKIRPPGYVHLQALDMMSKGHMLADVVANI 380
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKLIE+KTY QA PYFDRLDYV M E + LA E+LL I+
Sbjct: 32 GEVVDRADPHVGLLHRGTEKLIEHKTYLQATPYFDRLDYVGTMNQEHAFVLATERLLGID 91
Query: 363 VPLRAKYIRVMF 374
+P+RAK+IR ++
Sbjct: 92 IPMRAKFIRTLY 103
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E QI++ INFGPQHPAAHGVL L E++
Sbjct: 3 ESQIQSYTINFGPQHPAAHGVLRLILEMS 31
>gi|83311883|ref|YP_422147.1| NADH dehydrogenase subunit D [Magnetospirillum magneticum AMB-1]
gi|123541539|sp|Q2W3I7.1|NUOD_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|82946724|dbj|BAE51588.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Magnetospirillum
magneticum AMB-1]
Length = 392
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 153/279 (54%), Positives = 194/279 (69%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L+ EI RILNH++ V DVG MTP + FEEREK+MEFYER GAR+HA Y RPGGV
Sbjct: 102 LYDEIGRILNHLLNVTAFIFDVGGMTPLLYGFEEREKLMEFYERVCGARLHANYYRPGGV 161
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DI + TF LD++E + T+NR++ QR D+G+VS E AL++GF+G
Sbjct: 162 AADLPAGLLEDIAAWCETFPKVLDDIETLATDNRIFKQRVVDIGVVSPEQALDWGFTGPN 221
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LR SGI WDLRK QPYD Y+ EFDIP+G +G+ ++ + EMR+S++I++Q I KMP
Sbjct: 222 LRASGIAWDLRKSQPYDVYDQMEFDIPVGKNGDGYDRYLVRVLEMRESVKIMKQCIAKMP 281
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GG VR +D KI+ P RSEMK G+ VP G Y A+EAPKGEF VYLV
Sbjct: 282 GGPVRVEDNKITPPKRSEMKTSMESLIHHFKLFTEGFKVPAGEVYGAIEAPKGEFAVYLV 341
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT KPYRCKI+ PG+ HL AL+ + KG LAD+VA I
Sbjct: 342 SDGTGKPYRCKIRPPGYVHLQALDMMSKGHMLADVVANI 380
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKLIE+KTY QA PYFDRLDYV M E + LA EKLL I+
Sbjct: 32 GEVVDRADPHVGLLHRGTEKLIEHKTYLQATPYFDRLDYVGTMNQEHAFVLATEKLLGID 91
Query: 363 VPLRAKYIRVMF 374
+P+RAK+IR ++
Sbjct: 92 IPIRAKFIRTLY 103
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E QI++ INFGPQHPAAHGVL L E++
Sbjct: 3 ESQIQSYTINFGPQHPAAHGVLRLILEMS 31
>gi|7524987|ref|NP_050085.1| NADH dehydrogenase subunit 7 [Dictyostelium discoideum]
gi|6647670|sp|Q23883.1|NDUS2_DICDI RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|1088421|dbj|BAA04731.1| 49kd subunit of iron-sulphur subcomplex of NADH-ubiquinone
reductase [Dictyostelium discoideum]
gi|4958890|dbj|BAA78067.1| NADH dehydrogenase subunit 7 [Dictyostelium discoideum]
Length = 406
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 156/290 (53%), Positives = 204/290 (70%), Gaps = 22/290 (7%)
Query: 40 PQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGAR 99
PQ A + +LF+EITR+LNHIMA THA+DVGA+TPF W FEEREK+MEFYER SGAR
Sbjct: 107 PQR--AKVIRVLFSEITRVLNHIMATTTHAMDVGALTPFLWAFEEREKLMEFYERVSGAR 164
Query: 100 MHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAE 159
MHAAY+RPGGVA D+P+ + +DIY F+ + RL+E+EDML NR+W QR D+GIVSAE
Sbjct: 165 MHAAYIRPGGVAFDLPMNISEDIYKFVIQYRKRLEEIEDMLINNRIWKQRLVDIGIVSAE 224
Query: 160 DALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSL 214
+ALNYGF+G +LRG+GI +D+RK PYD Y+ ++F I IG N +I MKEM QSL
Sbjct: 225 EALNYGFTGPLLRGAGIVYDIRKNYPYDDYDKYDFKIIIGEENNSYTRFIIRMKEMYQSL 284
Query: 215 RIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVE 259
I+EQA+N + G ++ + + I+ P R+ +K G+ +P YT VE
Sbjct: 285 SIIEQALNNLRPGLIKLEGVNITAPDRAFVKKDMESCINHFKFFSEGFIIPANENYTIVE 344
Query: 260 APKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
APKGEFG+YL ++ T+KPYRC+IKAPGF HL L + K LAD+V +I
Sbjct: 345 APKGEFGIYLNANDTAKPYRCRIKAPGFLHLQGLNMMSKDHLLADVVTLI 394
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 59/76 (77%), Gaps = 6/76 (7%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL------L 359
V ++PHIGLLHRGTEKLIE KTYTQALPYFDRLDYVSM E YSLAVE+L +
Sbjct: 43 VVRVEPHIGLLHRGTEKLIEGKTYTQALPYFDRLDYVSMNVQEHAYSLAVERLYLDSLDI 102
Query: 360 NIEVPLRAKYIRVMFT 375
+E+P RAK IRV+F+
Sbjct: 103 ELEIPQRAKVIRVLFS 118
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI--MAVGTHALDVGAM----TP 77
K ++N +NFGPQHPAAHGVL L E + R+ HI + GT L G P
Sbjct: 12 KVMKNFTLNFGPQHPAAHGVLRLIVELESENVVRVEPHIGLLHRGTEKLIEGKTYTQALP 71
Query: 78 FFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIP 115
+F + M E A + Y+ + L+IP
Sbjct: 72 YFDRLDYVS--MNVQEHAYSLAVERLYLDSLDIELEIP 107
>gi|402819267|ref|ZP_10868836.1| nuoD1 protein [alpha proteobacterium IMCC14465]
gi|402511971|gb|EJW22231.1| nuoD1 protein [alpha proteobacterium IMCC14465]
Length = 392
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 150/282 (53%), Positives = 199/282 (70%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ + T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNITTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDIY F F +D++E +LTENR++ QR D+G+VS D N+G +
Sbjct: 159 GGVHQDLPQDLLDDIYAFCDPFLKVMDDIESLLTENRIFKQRNVDIGVVSHHDINNWGLT 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM RGSG+ WDLRK QPY+ Y + +FDIP+G +G+ + ++E RQS+RI++Q +
Sbjct: 219 GVMARGSGLAWDLRKAQPYEIYSDLDFDIPVGKNGDCYDRYLCRVEECRQSVRIMKQCLE 278
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP G V + D KI P R EMK GY VP G Y AVEAPKGEFGV
Sbjct: 279 QMPDGPVSSKDGKIVPPKRGEMKGSMEALIHHFKLYTEGYHVPAGEIYRAVEAPKGEFGV 338
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLV+DG++KPYRCKI+APG+AHL AL+ + + LAD+ AI+
Sbjct: 339 YLVADGSNKPYRCKIRAPGYAHLQALDYLSRDHMLADVSAIL 380
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV IDPHIGLLHRGTEKLIE+KTY Q++PYFDRLDYV+ M E ++LAVE +L +
Sbjct: 32 GEIVERIDPHIGLLHRGTEKLIEHKTYLQSVPYFDRLDYVAPMNQEHAFALAVESMLGVT 91
Query: 363 VPLRAKYIRVMFT 375
VP R +YIRV+++
Sbjct: 92 VPARGQYIRVLYS 104
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+ + R INFGPQHPAAHGVL L + + RI HI
Sbjct: 3 QAEDRKFTINFGPQHPAAHGVLRLVMDLDGEIVERIDPHI 42
>gi|87043013|ref|YP_492627.1| NADH dehydrogenase subunit 7 [Dictyostelium citrinum]
gi|122000119|sp|Q2LCR5.1|NDUS2_DICCI RecName: Full=NADH-ubiquinone oxidoreductase 49 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 7
gi|84682113|gb|ABC60378.1| NADH dehydrogenase subunit 7 [Dictyostelium citrinum]
Length = 406
Score = 310 bits (795), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 156/290 (53%), Positives = 204/290 (70%), Gaps = 22/290 (7%)
Query: 40 PQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGAR 99
PQ A + +LF+EITR+LNHIMA THA+DVGA+TPF W FEEREK+MEFYER SGAR
Sbjct: 107 PQR--AKVIRVLFSEITRVLNHIMATTTHAMDVGALTPFLWAFEEREKLMEFYERVSGAR 164
Query: 100 MHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAE 159
MHAAY+RPGGVA D+P+ + +DIY F+ + RL+E+EDML NR+W QR D+GIVSAE
Sbjct: 165 MHAAYIRPGGVAFDLPMNISEDIYKFVIQYRKRLEEIEDMLINNRIWKQRLVDIGIVSAE 224
Query: 160 DALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSL 214
+ALNYGF+G +LRG+GI +D+RK PYD Y+ ++F I IG N +I MKEM QSL
Sbjct: 225 EALNYGFTGPLLRGAGIVYDIRKNYPYDDYDKYDFKIIIGEENNSYTRFIIRMKEMYQSL 284
Query: 215 RIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVE 259
I+EQA+N + G ++ + + I+ P R+ +K G+ +P YT VE
Sbjct: 285 AIIEQALNNLRPGLIKLEGVNITAPDRAFVKKDMESCINHFKFFSEGFIIPANENYTIVE 344
Query: 260 APKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
APKGEFG+YL ++ T+KPYRC+IKAPGF HL L + K LAD+V +I
Sbjct: 345 APKGEFGIYLNANDTAKPYRCRIKAPGFLHLQGLNMMSKDHLLADVVTLI 394
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 59/76 (77%), Gaps = 6/76 (7%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL------L 359
V ++PHIGLLHRGTEKLIE KTYTQALPYFDRLDYVSM E YSLAVE+L +
Sbjct: 43 VVRVEPHIGLLHRGTEKLIEGKTYTQALPYFDRLDYVSMNVQEHAYSLAVERLYLDSLDI 102
Query: 360 NIEVPLRAKYIRVMFT 375
+E+P RAK IRV+F+
Sbjct: 103 ELEIPQRAKVIRVLFS 118
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI--MAVGTHALDVGAM----TP 77
K ++N +NFGPQHPAAHGVL L E + R+ HI + GT L G P
Sbjct: 12 KVMKNFTLNFGPQHPAAHGVLRLIVELESENVVRVEPHIGLLHRGTEKLIEGKTYTQALP 71
Query: 78 FFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIP 115
+F + M E A + Y+ + L+IP
Sbjct: 72 YFDRLDYVS--MNVQEHAYSLAVERLYLDSLDIELEIP 107
>gi|307942120|ref|ZP_07657471.1| NADH dehydrogenase (quinone), d subunit [Roseibium sp. TrichSKD4]
gi|307774406|gb|EFO33616.1| NADH dehydrogenase (quinone), d subunit [Roseibium sp. TrichSKD4]
Length = 394
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 155/284 (54%), Positives = 201/284 (70%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ + T ALDVGA+TP W FE RE++M FYERA GARMHAAYVRP
Sbjct: 99 IRVLYSEIGRLLSHLLNITTQALDVGALTPPLWGFEPREELMVFYERACGARMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI+ F F LD++E +LT NR++ QR D+G+VS +DA +GFS
Sbjct: 159 GGVHQDLPRDLLDDIWDFCDPFLQTLDDIEGLLTNNRIFKQRNVDIGVVSLDDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y + +FDIPIG +G+ +I M+EMRQS+RI++Q +
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYADLDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCLE 278
Query: 223 KMP--GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G V + D KI P R EMK GY VP G Y AVEAPKGEF
Sbjct: 279 KLTIENGPVSSADGKIVPPKRGEMKRSMESLIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 338
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDGT+KPYRCKIKAPG+AHL+A++ + G LAD+ A++
Sbjct: 339 GVYLVSDGTNKPYRCKIKAPGYAHLSAMDFVCNGHQLADVSAVL 382
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYV+ M E Y+LAVE++L IE
Sbjct: 32 GEVVTRVDPHIGLLHRGTEKLIEHKTYLQAVPYFDRLDYVAPMNQEHAYALAVERMLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 92 VPMRGQLIRVLYS 104
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
E Q+RN INFGPQHPAAHGVL L E +TR+ HI
Sbjct: 3 EAQVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHI 42
>gi|372450214|ref|YP_005090366.1| NADH dehydrogenase subunit 7 (mitochondrion) [Phoenix dactylifera]
gi|343478419|gb|AEM43907.1| NADH dehydrogenase subunit 7 (mitochondrion) [Phoenix dactylifera]
Length = 394
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 148/285 (51%), Positives = 197/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A THA+DVGA TPF W FEEREK++EFYER GARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLASTTHAMDVGASTPFLWAFEEREKLLEFYERVPGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CPNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG L RGTEKLIEYKTY QALPY DR +YVS M E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLQRGTEKLIEYKTYLQALPYSDRSEYVSTMAQEHAHSSAVERLLNFE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
>gi|71083585|ref|YP_266304.1| NADH dehydrogenase subunit D [Candidatus Pelagibacter ubique
HTCC1062]
gi|123646642|sp|Q4FM88.1|NUOD_PELUB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|71062698|gb|AAZ21701.1| NADH Dehydrogenase I Chain D [Candidatus Pelagibacter ubique
HTCC1062]
Length = 391
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 149/285 (52%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EI RIL+HI+ V T ALDVGA+TP W FEERE +M FYERASG+R+HA Y
Sbjct: 95 AQLIRVMFCEIGRILSHILNVTTQALDVGALTPSLWGFEERETLMTFYERASGSRLHANY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P+GL +DI +F +F +D++E +LT+NR++ QR D+GIV+ EDAL+Y
Sbjct: 155 FRAGGVHQDLPMGLAEDIGNFCESFPKIIDDLETLLTDNRIFKQRNVDIGIVTKEDALDY 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQ 219
FSGVM+RGSG+ WDLRK QPYD YE EF IP+G +G+ ++EMR+S+ I++Q
Sbjct: 215 SFSGVMIRGSGVPWDLRKSQPYDCYEQLEFKIPVGKNGDCFDRYLCRIEEMRESVSIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++KM G +++ D KIS P + ++K GY V YTAVEAPKGE
Sbjct: 275 CLSKMEKGPIKSLDGKISPPPKKDIKQSMEALIHHFKLFTEGYRVDKDEIYTAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+SDGTSKPY+CKI+APGF+HL A++ + KG LAD+ A++
Sbjct: 335 FGVYLISDGTSKPYKCKIRAPGFSHLQAMDYLIKGHMLADVPAVL 379
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LA+EK+L I
Sbjct: 31 GEVVEKADPHIGLLHRGTEKLIENKTYMQAVPYFDRLDYVAPMNQEHAFALAIEKILKIN 90
Query: 363 VPLRAKYIRVMFT 375
VP+RA+ IRVMF
Sbjct: 91 VPIRAQLIRVMFC 103
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K+I+ + +NFGPQHPAAHGVL L E+
Sbjct: 3 KKIKTLNLNFGPQHPAAHGVLRLILEL 29
>gi|443917277|gb|ELU38039.1| NADH-ubiquinone oxidoreductase [Rhizoctonia solani AG-1 IA]
Length = 755
Score = 310 bits (793), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 160/310 (51%), Positives = 204/310 (65%), Gaps = 49/310 (15%)
Query: 15 WKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGA 74
W + N + VEK + V P+ A + LF EITRILNH+MAV THA+DVGA
Sbjct: 125 WVVTNEQCYSLAVEKLLNIEV----PER--AQWIRTLFGEITRILNHLMAVLTHAMDVGA 178
Query: 75 MTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLD 134
+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGVA D+P GLL+DI+ + + FS+R+D
Sbjct: 179 LTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVAFDLPHGLLEDIHKWSTQFSSRVD 238
Query: 135 EVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEF 194
E+E+++T NR+W RT +G V+A++AL+Y FSGVMLRGSG+ WD+RKVQPYD Y
Sbjct: 239 EIEEVVTGNRIWKARTIGIGKVTAQEALDYSFSGVMLRGSGVPWDIRKVQPYDKY----- 293
Query: 195 DIPIGTHGNVIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK--------- 245
+ +NKMP G V+ DD K+ P R+ MK
Sbjct: 294 -----------------------AECLNKMPTGVVKVDDYKLVPPPRASMKESMEALIHH 330
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
GY VPPG TY+A+EAPKGE GVYLVSDG+++PYRCKI+APGFAHLA + + +
Sbjct: 331 FKLFSEGYSVPPGETYSAIEAPKGEMGVYLVSDGSNRPYRCKIRAPGFAHLAGSDFMMRH 390
Query: 300 SFLADIVAII 309
FL D VA+I
Sbjct: 391 HFLPDAVAVI 400
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 344 MMCNEQCYSLAVEKLLNIEVPLRAKYIRVMF 374
++ NEQCYSLAVEKLLNIEVP RA++IR +F
Sbjct: 126 VVTNEQCYSLAVEKLLNIEVPERAQWIRTLF 156
>gi|91761994|ref|ZP_01263959.1| NADH dehydrogenase delta subunit [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717796|gb|EAS84446.1| NADH dehydrogenase delta subunit [Candidatus Pelagibacter ubique
HTCC1002]
Length = 391
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 149/285 (52%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EI RIL+HI+ V T ALDVGA+TP W FEERE +M FYERASG+R+HA Y
Sbjct: 95 AQLIRVMFCEIGRILSHILNVTTQALDVGALTPSLWGFEERETLMTFYERASGSRLHANY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P+GL +DI +F +F +D++E +LT+NR++ QR D+GIV+ EDAL+Y
Sbjct: 155 FRAGGVHQDLPMGLEEDIGNFCESFPKIIDDLETLLTDNRIFKQRNVDIGIVTKEDALDY 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQ 219
FSGVM+RGSG+ WDLRK QPYD YE EF IP+G +G+ ++EMR+S+ I++Q
Sbjct: 215 SFSGVMIRGSGVPWDLRKSQPYDCYEQLEFKIPVGKNGDCFDRYLCRIEEMRESVSIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++KM G +++ D KIS P + ++K GY V YTAVEAPKGE
Sbjct: 275 CLSKMEKGPIKSLDGKISPPPKKDIKQSMEALIHHFKLFTEGYRVDKDEIYTAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+SDGTSKPY+CKI+APGF+HL A++ + KG LAD+ A++
Sbjct: 335 FGVYLISDGTSKPYKCKIRAPGFSHLQAMDYLIKGHMLADVPAVL 379
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LA+EK+L I
Sbjct: 31 GEVVEKADPHIGLLHRGTEKLIENKTYMQAVPYFDRLDYVAPMNQEHAFALAIEKILKIN 90
Query: 363 VPLRAKYIRVMFT 375
VP+RA+ IRVMF
Sbjct: 91 VPIRAQLIRVMFC 103
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K+I+ + +NFGPQHPAAHGVL L E+
Sbjct: 3 KKIKTLNLNFGPQHPAAHGVLRLILEL 29
>gi|222148277|ref|YP_002549234.1| NADH dehydrogenase subunit D [Agrobacterium vitis S4]
gi|221735265|gb|ACM36228.1| NADH ubiquinone oxidoreductase chain D [Agrobacterium vitis S4]
Length = 396
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/286 (53%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+HIM V T A+DVGAMTP W FEEREK+M FYERASGARMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERASGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GG+ DIP L++DI + F LD++E +LTENR++ QR D+G+VS EDA +GFS
Sbjct: 159 GGIHQDIPAQLVEDIGAWCDPFLKVLDDIEGLLTENRIFKQRNVDIGVVSLEDAWKWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIP+G +G+ +I M EMR+S++I++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYSDMEFDIPVGKNGDCYDRYLIRMMEMRESVKIMKQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D K+ P R EMK G+ VP G Y AVEAPKG
Sbjct: 279 RLLGDARIGPVSSVDGKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPYRCKI+APGF HL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVADGTNKPYRCKIRAPGFVHLQAMDFMSRGHQLADVTAVL 384
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QALPYFDRLDYV+ M E Y LAVEKLL +E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEAKTYLQALPYFDRLDYVAPMNQEHAYCLAVEKLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGP+HP+AHGVL L E+
Sbjct: 3 EHSVRNFTINFGPEHPSAHGVLRLVLEL 30
>gi|328543688|ref|YP_004303797.1| NADH dehydrogenase subunit D [Polymorphum gilvum SL003B-26A1]
gi|326413432|gb|ADZ70495.1| NADH dehydrogenase subunit D [Polymorphum gilvum SL003B-26A1]
Length = 394
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/284 (54%), Positives = 200/284 (70%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FE RE++M FYERA GARMHAAYVRP
Sbjct: 99 IRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEPREELMVFYERACGARMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI+ F F LD++E +LT+NR++ QR D+G+V E+A +GFS
Sbjct: 159 GGVHQDLPRQLLDDIWDFCDPFLQTLDDIEGLLTDNRIFKQRNVDIGVVKLEEAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI++Q +
Sbjct: 219 GVMVRGSGAPWDLRKAQPYECYAELDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCLE 278
Query: 223 KMP--GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G V T D KI P R EMK GY VP G Y AVEAPKGEF
Sbjct: 279 KLTVETGPVSTTDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEF 338
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLV+DGT+KPYRCKIKAPG++HL A++ + +G LAD+ AI+
Sbjct: 339 GVYLVADGTNKPYRCKIKAPGYSHLQAMDFLCRGHMLADVSAIL 382
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVE+LL +
Sbjct: 32 GEVVTRVDPHIGLLHRGTEKLIEQKTYLQAVPYFDRLDYVAPMNQEHAFALAVERLLGVT 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
E Q+RN INFGPQHPAAHGVL L E +TR+ HI
Sbjct: 3 EAQVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHI 42
>gi|187764085|ref|YP_001876534.1| NADH dehydrogenase subunit 7 [Dictyostelium fasciculatum]
gi|160688793|gb|ABX45208.1| NADH dehydrogenase subunit 7 [Dictyostelium fasciculatum]
Length = 406
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 204/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNHI+A THA+DVGA+TPF W FEEREK+MEFYER SGARMH+AY
Sbjct: 110 AKVIRILFSEITRILNHILATTTHAMDVGALTPFLWAFEEREKLMEFYERVSGARMHSAY 169
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+ + DDIY F + RL+E+EDML NR+W QR D+G V+AED+LN
Sbjct: 170 IRPGGVAFDLPMQISDDIYAFCKQYKRRLEEIEDMLINNRIWKQRLVDIGTVTAEDSLNA 229
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+GVMLRG+G+ +D+RK PYD Y+ ++FDI IG N ++ +KEM QSL+I+EQ
Sbjct: 230 GFTGVMLRGAGLLYDIRKNFPYDDYDKYDFDIIIGEENNSYTRFILRIKEMYQSLKIIEQ 289
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A+N + G ++ + + +++P R+ +K G+ +P YT VEAPKGE
Sbjct: 290 ALNFLKPGLIKIEGLNLTSPDRAFVKKDMESCINHFKFFSEGFVIPQNEIYTFVEAPKGE 349
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S+ T+KPYRC+IKAPGF HL L+ + K LAD+V +I
Sbjct: 350 FGVYLASNNTAKPYRCRIKAPGFLHLQGLDMMSKNHLLADVVTLI 394
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 63/79 (79%), Gaps = 6/79 (7%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL---- 358
++ V +DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM E YSLAVE+L
Sbjct: 40 SETVKRVDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMQVQEHAYSLAVERLYLQT 99
Query: 359 --LNIEVPLRAKYIRVMFT 375
+ +E+P+RAK IR++F+
Sbjct: 100 HEIELEIPVRAKVIRILFS 118
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI--MAVGTHAL-DVGAMTPFFW 80
K ++N +NFGPQHPAAHGVL L E + R+ HI + GT L + T
Sbjct: 12 KVLKNFTLNFGPQHPAAHGVLRLIVELDSETVKRVDPHIGLLHRGTEKLIEYKTYTQALP 71
Query: 81 LFEEREKM-MEFYERASGARMHAAYVRPGGVALDIPI 116
F+ + + M+ E A + Y++ + L+IP+
Sbjct: 72 YFDRLDYVSMQVQEHAYSLAVERLYLQTHEIELEIPV 108
>gi|110680467|ref|YP_683474.1| NADH dehydrogenase subunit D [Roseobacter denitrificans OCh 114]
gi|122972619|sp|Q163Q5.1|NUOD_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|109456583|gb|ABG32788.1| NADH-quinone oxidoreductase chain D [Roseobacter denitrificans OCh
114]
Length = 407
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 201/285 (70%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI RILNHI+ + T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 111 IRVLFCEIGRILNHILNITTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAYFRP 170
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D+++ +LTENR++ QR D+G+V+ ED L YGFS
Sbjct: 171 GGVHQDLPPALIDDIETWAHEFPRVIDDIDGLLTENRIFKQRNADIGVVTEEDILEYGFS 230
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IPIG +G+ ++ M+EMRQSL I+ QAI
Sbjct: 231 GVMVRGSGLAWDLRRAQPYERYDEFDFQIPIGKNGDCYDRYLVRMEEMRQSLSIILQAIA 290
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ E + D + KI+ PSRS+MK G+ VP G Y VEAPKGE
Sbjct: 291 KLRAPEGQGDVLARGKITPPSRSDMKTSMESLIHHFKLYTEGFHVPAGEVYACVEAPKGE 350
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR KI+APGF HL A++ + +G LAD+ AII
Sbjct: 351 FGVYLVADGTNKPYRAKIRAPGFLHLQAMDHMSRGHQLADVAAII 395
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 44 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+F
Sbjct: 104 VPRRASLIRVLFC 116
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRLVLEL 42
>gi|15888601|ref|NP_354282.1| NADH ubiquinone oxidoreductase chain D [Agrobacterium fabrum str.
C58]
gi|335035093|ref|ZP_08528436.1| NADH dehydrogenase subunit D [Agrobacterium sp. ATCC 31749]
gi|218534381|sp|A9CJA9.1|NUOD_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|15156321|gb|AAK87067.1| NADH ubiquinone oxidoreductase chain D [Agrobacterium fabrum str.
C58]
gi|333793524|gb|EGL64878.1| NADH dehydrogenase subunit D [Agrobacterium sp. ATCC 31749]
Length = 396
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 203/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+HIM V T A+DVGAMTP W FEEREK+M FYERA GARMH+AYVRP
Sbjct: 99 IRVLYSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F LD +E +LT+NR++ QR D+G+VS EDA +GF+
Sbjct: 159 GGVHQDLPPELVDDIGKWCDPFLTVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFT 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIP+G +G+ +I M+EMR+S++I++Q ++
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLSGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVY+V+DG++KPYRCKI+APG+AHL A++ + KG LAD+ A++
Sbjct: 339 EFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVL 384
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEKLL +E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPMRGQLIRVLYS 104
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGP+HP+AHGVL L E+
Sbjct: 3 EHNVRNFTINFGPEHPSAHGVLRLVLEL 30
>gi|224365620|ref|YP_002608348.1| NADH dehydrogenase subunit 7 [Vitis vinifera]
gi|209954144|emb|CAQ77574.1| NADH dehydrogenase subunit 7 [Vitis vinifera]
gi|239764745|gb|ACS15215.1| NADH dehydrogenase subunit 7 [Vitis vinifera]
Length = 394
Score = 307 bits (786), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 147/285 (51%), Positives = 197/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TP W EEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGASTPSLWASEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CPNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 382
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DR DYVS M E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
>gi|326910752|gb|AEA11194.1| NADH dehydrogenase subunit 7 (mitochondrion) [Selaginella
moellendorffii]
gi|327176875|gb|AEA29881.1| NADH dehydrogenase subunit 7 (mitochondrion) [Selaginella
moellendorffii]
Length = 397
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 144/282 (51%), Positives = 198/282 (70%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAE+TR+LNH++A+ THA+DVGA+TPF FEERE+++E YER SGARMHA Y+RP
Sbjct: 104 IRVLFAELTRLLNHLLALTTHAMDVGAVTPFLHAFEERERLIECYERVSGARMHATYLRP 163
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GG+A D+P G+ +D+ F+AR+D E+MLT NR+W QR D+G V + AL++GF+
Sbjct: 164 GGMAHDLPSGMCEDLGVLTQQFAARVDGYEEMLTHNRIWKQRLVDIGPVHGQQALDWGFT 223
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAIN 222
GV+LRGSG+ WDLR+ PYD Y+ EFD+P+GT G+ I ++EMRQS R++ + ++
Sbjct: 224 GVLLRGSGVCWDLRQAAPYDVYDLLEFDVPVGTRGDCYDRYRIRLEEMRQSQRLLVECVH 283
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G DD K+ P RS +K GY VP +TYTAVEAPKGEFGV
Sbjct: 284 DLPDGSTIADDRKLCPPHRSAVKHSMESLIHHFQLYAEGYAVPAASTYTAVEAPKGEFGV 343
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+VS+G+++ YRC I+APGFAHL L+ + K LAD+V II
Sbjct: 344 LVVSNGSNRSYRCAIRAPGFAHLQGLDFMSKHHMLADVVTII 385
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +P IGLL+RG EKL+EYKTY QALPYFDRLDYVSMM E YSLAVE L++
Sbjct: 37 GEVVERAEPQIGLLYRGMEKLVEYKTYLQALPYFDRLDYVSMMAQEYAYSLAVETLMDAH 96
Query: 363 VPLRAKYIRVMFT 375
P R++YIRV+F
Sbjct: 97 SPARSQYIRVLFA 109
>gi|170742514|ref|YP_001771169.1| NADH dehydrogenase I subunit D [Methylobacterium sp. 4-46]
gi|218534419|sp|B0ULK7.1|NUOD_METS4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|168196788|gb|ACA18735.1| NADH dehydrogenase I, D subunit [Methylobacterium sp. 4-46]
Length = 396
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 153/283 (54%), Positives = 201/283 (71%), Gaps = 24/283 (8%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y RPGGV
Sbjct: 102 LFCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGV 161
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
D+P GL+DDI F F +D+++ ++ NR++ QR D+GIV+ + A+ +GFSGVM
Sbjct: 162 HQDLPPGLIDDIEAFCDPFLQVVDDLDALVIGNRIFKQRNVDIGIVTVDAAMAWGFSGVM 221
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM- 224
LRGSGI WDLR+ QPY+ YE EFD+P+G +G+ VI M+EMRQS+RI++Q + K+
Sbjct: 222 LRGSGIPWDLRRAQPYEAYEEMEFDVPVGKNGDTYDRQVIRMEEMRQSVRIMKQCLAKLR 281
Query: 225 -PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFG 266
P G+ V T D K++ PSR EMK G+ VP G Y AVEAPKGEFG
Sbjct: 282 APDGQGPVTTQDGKVAPPSRREMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 341
Query: 267 VYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VYLV+DGT+KPYRCKI+APGFAHL A++ + +G LAD+ I+
Sbjct: 342 VYLVADGTNKPYRCKIRAPGFAHLQAMDWMCRGHMLADVSCIL 384
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA PYFDRLDYV+ M E + LAVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEVKTYLQATPYFDRLDYVAPMNQEHAFCLAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP RAK IR +F
Sbjct: 92 VPRRAKLIRTLFC 104
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHSIRNFSINFGPQHPAAHGVLRLVLEL 30
>gi|254456097|ref|ZP_05069526.1| NADH dehydrogenase (quinone), D subunit [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083099|gb|EDZ60525.1| NADH dehydrogenase (quinone), D subunit [Candidatus Pelagibacter
sp. HTCC7211]
Length = 391
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 146/285 (51%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EI RIL+HI+ V T ALDVGA+TP W FEERE +M FYERASG+R+HA Y
Sbjct: 95 AQYIRVIFCEIGRILSHILNVTTQALDVGALTPSLWGFEERETLMTFYERASGSRLHANY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P GL +DI F TF +D++E +LT+NR++ QR D+GIV+ EDAL+Y
Sbjct: 155 FRAGGVHQDLPHGLENDIGKFCQTFPKIIDDLESLLTDNRIFKQRNVDIGIVTKEDALDY 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVM+RGSG+ WDLRK QPYD Y+ +F IP+G +G+ + ++EM++S+ I++Q
Sbjct: 215 SFSGVMIRGSGVPWDLRKSQPYDCYDQLDFKIPVGKNGDCYDRYLCRIEEMKESVSIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++KM G +++ D KIS P++ ++K GY VP YTAVEAPKGE
Sbjct: 275 CLSKMEKGPIKSLDGKISPPAKKDIKQSMEALIHHFKLFTEGYRVPKDEIYTAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+SDG+SKPY+CKI+APGF+HL +++ + KG LAD+ A++
Sbjct: 335 FGVYLISDGSSKPYKCKIRAPGFSHLQSMDYLIKGHMLADVPAVL 379
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEK+L I+
Sbjct: 31 GEVVEKADPHIGLLHRGTEKLIENKTYMQAVPYFDRLDYVAPMNQEHAFALAVEKILEID 90
Query: 363 VPLRAKYIRVMFT 375
VP+RA+YIRV+F
Sbjct: 91 VPIRAQYIRVIFC 103
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K+I+N+ +NFGPQHPAAHGVL L E+
Sbjct: 3 KKIKNLNLNFGPQHPAAHGVLRLILEL 29
>gi|329114681|ref|ZP_08243440.1| NADH-quinone oxidoreductase subunit D [Acetobacter pomorum DM001]
gi|326696161|gb|EGE47843.1| NADH-quinone oxidoreductase subunit D [Acetobacter pomorum DM001]
Length = 426
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 146/280 (52%), Positives = 196/280 (70%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++FAEITR+LNHI+ + LD GA+TP W +EEREK++EFYE ASGAR HA Y RPGG
Sbjct: 135 VMFAEITRVLNHILNLTAMGLDCGAVTPALWGYEEREKLLEFYEAASGARFHANYFRPGG 194
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA D+P GL D I + F +DE+E +LTENR+W QRT +G+ + E AL +GFSG
Sbjct: 195 VARDVPAGLEDKIGAWAKEFPKWIDELEGLLTENRIWKQRTVGIGVFTTEQALAWGFSGP 254
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
LR SG+ WDLR+ QPYD Y EF++P+ G+ ++ + EMR+S++I+EQ +++M
Sbjct: 255 CLRASGVPWDLRRNQPYDNYHKVEFNVPVARQGDCYDRYLVRVAEMRESVKIIEQCLSQM 314
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
G+V+ D K S P R+EMK GY VPPGATYTAVE+PKGEFGVYL
Sbjct: 315 RPGDVKVQDPKFSPPPRAEMKRSMEALIHHFKLFSEGYHVPPGATYTAVESPKGEFGVYL 374
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+DG+++PYRCKI+ GFAHL A++++ + LAD+VAII
Sbjct: 375 VADGSNRPYRCKIRPTGFAHLQAIDELSRRGMLADMVAII 414
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PHIGLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LA EKLL I+
Sbjct: 66 GEVVARAVPHIGLLHRGTEKLIEYKTYQKALPYFDRLDYVSPMCEEQAFALATEKLLGID 125
Query: 363 VPLRAKYIRVMFT 375
+P RAK++RVMF
Sbjct: 126 IPERAKWLRVMFA 138
>gi|440226237|ref|YP_007333328.1| NADH-quinone oxidoreductase subunit d [Rhizobium tropici CIAT 899]
gi|440037748|gb|AGB70782.1| NADH-quinone oxidoreductase subunit d [Rhizobium tropici CIAT 899]
Length = 396
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAYVRP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++D+LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEKLVQDIGDWCDPFLKALDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y + EFDIPIG +G+ +I M EMR+S+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRKAQPYECYSDLEFDIPIGKNGDCYDRYLIRMIEMRESVRIMKQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDARTGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y+LAVEKLL I+
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGID 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|406989828|gb|EKE09546.1| hypothetical protein ACD_16C00139G0014 [uncultured bacterium]
Length = 395
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 198/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++ + T A+DVGAMTP W FEERE +M FYER SGARMHA Y
Sbjct: 99 AKYIRVLFCEITRILNHLLNITTMAIDVGAMTPLLWGFEEREILMGFYERVSGARMHANY 158
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L +DI F + F +D++E +LTENR++ QRT ++G ++AE AL++
Sbjct: 159 FRPGGVNKDLPSDLAEDILAFANRFPKVIDDLEGLLTENRIFKQRTVNIGTMTAEQALDW 218
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+G MLR S + WDLR+ QPY+ Y+ F+F IP+G +G+ ++ M+EMRQS+RI+ Q
Sbjct: 219 GFTGPMLRASNVAWDLRRNQPYEVYDQFDFFIPVGKNGDCYDRYLVRMEEMRQSVRIIIQ 278
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ KMP G V+ D KI P R+EMK GY VP G TYT VEAPKGE
Sbjct: 279 CLEKMPAGPVKVHDYKIVPPPRTEMKTSMEALIHHFKLYTEGYHVPAGETYTVVEAPKGE 338
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG++ PYRCKI+AP FA + A + + KG LAD+ +II
Sbjct: 339 FGVYLVSDGSNMPYRCKIRAPSFAFMQAFDFMTKGHMLADVPSII 383
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYVS M E ++LAVEKLL +E
Sbjct: 35 GEVVERADPHIGLLHRGTEKLIEYKTYLQAIPYFDRLDYVSPMSQEHAFALAVEKLLGLE 94
Query: 363 VPLRAKYIRVMFT 375
+P RAKYIRV+F
Sbjct: 95 IPERAKYIRVLFC 107
>gi|158423294|ref|YP_001524586.1| NADH-quinone dehydrogenase chain D 1 protein [Azorhizobium
caulinodans ORS 571]
gi|218534385|sp|A8I3Z3.1|NUOD_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|158330183|dbj|BAF87668.1| NADH-quinone dehydrogenase chain D 1 protein [Azorhizobium
caulinodans ORS 571]
Length = 402
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/284 (52%), Positives = 202/284 (71%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FE REK+M FYERASG+RMHAAY RP
Sbjct: 107 IRVLYSEIGRLLSHLLNVTTFAMDVGALTPPLWGFEAREKLMMFYERASGSRMHAAYFRP 166
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI F TF + LD+++ ++T NR++ QRT D+G+V+ EDAL +GFS
Sbjct: 167 GGVHQDLPQKLVEDIGEFCRTFPSLLDDLDALVTGNRIFKQRTVDIGVVTLEDALAWGFS 226
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y +FDIPIG HG+ V+ M+EMRQS +I+ Q ++
Sbjct: 227 GVMVRGSGAPWDLRRAQPYECYSELDFDIPIGKHGDCYDRYVVRMEEMRQSNKIMLQCVD 286
Query: 223 KM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
++ G V + D K+S P R EMK G+ VP G Y AVEAPKGEF
Sbjct: 287 RLLKEAGPVASTDRKVSPPKRGEMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGEF 346
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLV DGT+KPYRCKI+APGFAHL +++ + +G LAD+ A++
Sbjct: 347 GVYLVGDGTNKPYRCKIRAPGFAHLQSMDFLCRGHMLADVSAVL 390
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDY + M E + LAVE+L IE
Sbjct: 40 GEVVERVDPHIGLLHRGTEKLIEAKTYLQAVPYFDRLDYCAPMNQEHAFCLAVERLAGIE 99
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 100 VPKRGQLIRVLYS 112
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEIT 56
+RN INFGPQHPAAHGVL + E+
Sbjct: 14 VRNFQINFGPQHPAAHGVLRMVLELN 39
>gi|110633379|ref|YP_673587.1| NADH dehydrogenase subunit D [Chelativorans sp. BNC1]
gi|123162556|sp|Q11JK3.1|NUOD_MESSB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|110284363|gb|ABG62422.1| NADH dehydrogenase subunit D [Chelativorans sp. BNC1]
Length = 396
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI+RILNH++ + T A+DVGA+TP W FEEREK+M FYERASGARMHAAY RP
Sbjct: 99 IRVLYSEISRILNHLLNITTQAMDVGALTPPLWGFEEREKLMVFYERASGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F +D+++++LTENR++ QR D+GIVS EDA +GFS
Sbjct: 159 GGVHQDLPEKLVEDIGKWIDPFLKTVDDLDELLTENRIFKQRNADIGIVSLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIP+G +G+ +I M+EMRQS +I+ Q +
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYPEMDFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V D K+ P R+ MK GY VP G Y AVEAPKG
Sbjct: 279 RLLGKERVGPVSNMDGKVVPPKRAAMKRSMESLIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPYRCK++APGFAHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVADGTNKPYRCKLRAPGFAHLQAMDFMCRGHLLADVTAVL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYV+ M E ++LA+E+LL I+
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEYKTYLQAIPYFDRLDYVAPMNQEHAFALAIERLLGID 91
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 92 VPIRGQLIRVLYS 104
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 3 ETSIRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|399090338|ref|ZP_10754039.1| NADH dehydrogenase I, D subunit [Caulobacter sp. AP07]
gi|398027967|gb|EJL21493.1| NADH dehydrogenase I, D subunit [Caulobacter sp. AP07]
Length = 416
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 152/284 (53%), Positives = 199/284 (70%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HA Y RP
Sbjct: 121 IRVLFCEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHANYFRP 180
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ L+DDI + F D++E ++T+NR++ QR D+G+VS EDAL +GFS
Sbjct: 181 GGVHQDLTPSLIDDIETWAKAFPKICDDIEGLITDNRIFKQRNVDIGVVSKEDALAWGFS 240
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSGI WDLR+ QPY+ Y FEFDIP+G +G+ + M+EMR+S RI+ QAI
Sbjct: 241 GVMVRGSGIAWDLRRNQPYECYNEFEFDIPLGKNGDCYDRYLCRMQEMRESTRIILQAIE 300
Query: 223 KM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G V T D K+S P R+EMK G+ P G Y AVEAPKGEF
Sbjct: 301 KLRVTPGSVMTQDNKVSPPRRAEMKRSMEALIHHFKLYTEGFRTPEGEVYAAVEAPKGEF 360
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GV++VS+GT+KPYRCKIKAPGF+HLAA++ + +G LAD+ AI+
Sbjct: 361 GVFVVSNGTNKPYRCKIKAPGFSHLAAMDWMNRGHQLADVSAIL 404
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKL+E +TY Q +PYFDRLDYV+ M E + LA+EKLL ++
Sbjct: 54 GEIVERVDPHIGLLHRGTEKLMEARTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGVD 113
Query: 363 VPLRAKYIRVMFT 375
VP R IRV+F
Sbjct: 114 VPKRGSLIRVLFC 126
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 24 LVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+VP E +R INFGPQHPAAHGVL L E+
Sbjct: 22 IVP-ETPVRKFNINFGPQHPAAHGVLRLVLEL 52
>gi|417860275|ref|ZP_12505331.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens F2]
gi|338823339|gb|EGP57307.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens F2]
Length = 396
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+HIM V T A+DVGAMTP W FEEREK+M FYERA GARMH+AYVRP
Sbjct: 99 IRVLYSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F LD +E +LT+NR++ QR D+G+VS EDA +GF+
Sbjct: 159 GGVHQDLPPELVDDIGKWCDPFLTVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFT 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIP+G +G+ +I M+EMR+S++I++Q ++
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLSGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVY+V+DG++KPYRCKI+APG+AHL A++ + KG LAD+ A++
Sbjct: 339 EFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVL 384
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEKLL +E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPMRGQLIRVLYS 104
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGP+HP+AHGVL L E+
Sbjct: 3 EHNVRNFTINFGPEHPSAHGVLRLVLEL 30
>gi|209545444|ref|YP_002277673.1| NADH dehydrogenase subunit D [Gluconacetobacter diazotrophicus PAl
5]
gi|218534462|sp|A9HRT9.2|NUOD_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209533121|gb|ACI53058.1| NADH dehydrogenase I, D subunit [Gluconacetobacter diazotrophicus
PAl 5]
Length = 416
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 196/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNHI+ + LD GA+TP W +EEREK++EFYE ASGAR HA Y
Sbjct: 120 AKWIRVMFAEITRILNHILNLTALGLDCGAVTPALWGYEEREKLIEFYEAASGARFHANY 179
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+P GL D I + F A +D++E +LT NR+W QRT +GI + E AL +
Sbjct: 180 FRPGGVSRDLPAGLEDRIAEWARQFPAWIDDLESLLTNNRIWKQRTVGIGIFTTEQALAW 239
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG LR SG+ WDLR+ QPYD Y+ EF+IP+ G+ +I + EMR+S+RIVEQ
Sbjct: 240 GFSGPCLRASGVPWDLRRAQPYDNYDKVEFNIPVARQGDCYDRYLIRVAEMRESVRIVEQ 299
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ +M G ++ D KI+ P R EMK GY VPPGATYTAVE+PKGE
Sbjct: 300 CLAQMKPGPIKIQDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTAVESPKGE 359
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+ GFAHL A++++ + LAD VAII
Sbjct: 360 FGVYLVADGSNRPYRCKIRPTGFAHLQAIDEMSRRHMLADAVAII 404
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PHIGLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LA EKLL I+
Sbjct: 56 GEVVARAIPHIGLLHRGTEKLIEYKTYPKALPYFDRLDYVSPMCEEQAFALATEKLLGID 115
Query: 363 VPLRAKYIRVMFT 375
+P RAK+IRVMF
Sbjct: 116 IPDRAKWIRVMFA 128
>gi|418296079|ref|ZP_12907923.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens CCNWGS0286]
gi|355539511|gb|EHH08749.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens CCNWGS0286]
Length = 396
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+HIM V T A+DVGAMTP W FEEREK+M FYERA GARMH+AYVRP
Sbjct: 99 IRVLYSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F LD +E +LT+NR++ QR D+G+VS EDA +GF+
Sbjct: 159 GGVHQDLPPELVDDIGKWCDPFLTVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFT 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIP+G +G+ +I M+EMR+S++I++Q ++
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLSGRHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVY+V+DG++KPYRCKI+APG+AHL A++ + KG LAD+ A++
Sbjct: 339 EFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVL 384
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEKLL +E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPMRGQLIRVLYS 104
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGP+HP+AHGVL L E+
Sbjct: 3 EHNVRNFTINFGPEHPSAHGVLRLVLEL 30
>gi|162148808|ref|YP_001603269.1| NADH dehydrogenase subunit D [Gluconacetobacter diazotrophicus PAl
5]
gi|161787385|emb|CAP56980.1| putative NADH-ubiquinone oxidoreductase subunit D
[Gluconacetobacter diazotrophicus PAl 5]
Length = 426
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 196/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNHI+ + LD GA+TP W +EEREK++EFYE ASGAR HA Y
Sbjct: 130 AKWIRVMFAEITRILNHILNLTALGLDCGAVTPALWGYEEREKLIEFYEAASGARFHANY 189
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+P GL D I + F A +D++E +LT NR+W QRT +GI + E AL +
Sbjct: 190 FRPGGVSRDLPAGLEDRIAEWARQFPAWIDDLESLLTNNRIWKQRTVGIGIFTTEQALAW 249
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG LR SG+ WDLR+ QPYD Y+ EF+IP+ G+ +I + EMR+S+RIVEQ
Sbjct: 250 GFSGPCLRASGVPWDLRRAQPYDNYDKVEFNIPVARQGDCYDRYLIRVAEMRESVRIVEQ 309
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ +M G ++ D KI+ P R EMK GY VPPGATYTAVE+PKGE
Sbjct: 310 CLAQMKPGPIKIQDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTAVESPKGE 369
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+ GFAHL A++++ + LAD VAII
Sbjct: 370 FGVYLVADGSNRPYRCKIRPTGFAHLQAIDEMSRRHMLADAVAII 414
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PHIGLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LA EKLL I+
Sbjct: 66 GEVVARAIPHIGLLHRGTEKLIEYKTYPKALPYFDRLDYVSPMCEEQAFALATEKLLGID 125
Query: 363 VPLRAKYIRVMFT 375
+P RAK+IRVMF
Sbjct: 126 IPDRAKWIRVMFA 138
>gi|149202671|ref|ZP_01879643.1| NADH dehydrogenase delta subunit [Roseovarius sp. TM1035]
gi|149143953|gb|EDM31987.1| NADH dehydrogenase delta subunit [Roseovarius sp. TM1035]
Length = 406
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 204/285 (71%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 110 IRVLYCEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + + F LD+++ +LTENR++ QR D+GI+S ++AL++GFS
Sbjct: 170 GGVHQDLPPALIDDIETWANEFPRVLDDIDGLLTENRIFKQRNADIGIISQQEALDWGFS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M+EMRQSLRI+ QAI
Sbjct: 230 GVMVRGSGMAWDLRRAQPYECYDEFDFLIPVGKNGDCYDRYLCRMEEMRQSLRIIHQAIA 289
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ E + D + KI+ P+R+EMK G+ VP G Y AVEAPKGE
Sbjct: 290 KLRAPEGQGDILARGKITPPARAEMKRSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKGE 349
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT++PYR K++APGF HL A++ + KG LAD+ AII
Sbjct: 350 FGVYLVADGTNRPYRAKLRAPGFLHLQAMDHVAKGHQLADVAAII 394
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 43 GELVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 102
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV++
Sbjct: 103 VPRRASLIRVLYC 115
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ + E++IRN INFGPQHPAAHGVL L E+
Sbjct: 8 DDALTGEQKIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|400753910|ref|YP_006562278.1| NADH-quinone oxidoreductase subunit D [Phaeobacter gallaeciensis
2.10]
gi|398653063|gb|AFO87033.1| NADH-quinone oxidoreductase subunit D [Phaeobacter gallaeciensis
2.10]
Length = 403
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 202/285 (70%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 109 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHAAYFRP 168
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + TF A +D+++ +LTENR++ QR D+G+V+ ED LNYGFS
Sbjct: 169 GGVHQDLPDALIDDIEAWTHTFPAVMDDIDGLLTENRIFKQRNADIGVVTEEDILNYGFS 228
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ ++ M+EMRQSL I+ Q I
Sbjct: 229 GVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQCIG 288
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG + K++ P+R +MK G+ VP G Y AVEAPKGE
Sbjct: 289 KLRETPGDILARG--KLTPPNRRDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGE 346
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR K++APGF HL A++ + KG LAD+ AII
Sbjct: 347 FGVYLVADGTNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAII 391
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 42 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 101
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 102 VPRRASLIRVLYS 114
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ + E++IRN INFGPQHPAAHGVL L E+
Sbjct: 7 DDALTGEQKIRNFNINFGPQHPAAHGVLRLVLEL 40
>gi|387164706|ref|YP_006280930.1| NADH dehydrogenase subunit 7 (mitochondrion) [Spirodela polyrhiza]
gi|385252632|gb|AFI54940.1| NADH dehydrogenase subunit 7 (mitochondrion) [Spirodela polyrhiza]
Length = 375
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/285 (51%), Positives = 195/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A THA+DVGA TPF W EEREK++EFYER GARMHA++
Sbjct: 79 AQYIRVLFREITRISNHSLASTTHAMDVGASTPFLWASEEREKLLEFYERVPGARMHASF 138
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+G DI F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 139 IRPGGVAQDLPLGSCRDIDSSTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 198
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 199 GFSGVMLRGPGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 258
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
NKMP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 259 CPNKMPSGMIKADDRKLCPPSRGRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGE 318
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 319 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 363
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 19/72 (26%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLL GT+ YVS M E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLQCGTK-------------------YVSTMAQEHAHSSAVERLLNCE 74
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 75 VPLRAQYIRVLF 86
>gi|294083714|ref|YP_003550471.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663286|gb|ADE38387.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 392
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 148/285 (51%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RILNH++ + T A+DVGAMTP W FEERE++M FYERA GAR+HAAY
Sbjct: 96 AQFIRVLYCEIGRILNHLLNLTTFAIDVGAMTPLLWGFEEREQLMGFYERACGARLHAAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLLD+I + F + +D++E +LTENR++ QRT D+G++S ++AL+
Sbjct: 156 FRPGGVHQDLPTGLLDEIGDWAHKFPSFIDDMETLLTENRIFKQRTVDIGVMSEKEALDL 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G +G LR SG+ WDLRK QPYD Y +FD+P+G G+ ++ ++EMRQSLRI+ Q
Sbjct: 216 GMTGPCLRASGLPWDLRKSQPYDVYAEMDFDVPMGKTGDCYARYLVRIEEMRQSLRIIHQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I +MP G V ++ K++ P RS+MK G+ VP G +YTAVEAPKGE
Sbjct: 276 CIAEMPEGPVLAENNKVTPPHRSDMKNSMEALIHHFKLYTEGFHVPEGESYTAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+APGF +AA++ + +G LAD VAII
Sbjct: 336 FGVYLVADGSNRPYRCKIRAPGFYFMAAVDYLSRGHMLADSVAII 380
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E ++L++EK L I+
Sbjct: 32 GEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMNQEHAWALSIEKALAID 91
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV++
Sbjct: 92 VPRRAQFIRVLYC 104
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E QI+ + +NFGPQHPAAHGVL L E+
Sbjct: 2 AEMQIKPITMNFGPQHPAAHGVLRLVLEM 30
>gi|298291844|ref|YP_003693783.1| NADH dehydrogenase I subunit D [Starkeya novella DSM 506]
gi|296928355|gb|ADH89164.1| NADH dehydrogenase I, D subunit [Starkeya novella DSM 506]
Length = 399
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/284 (54%), Positives = 198/284 (69%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T ALDVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 104 IRVLYSEIGRILSHMLNVTTQALDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP 163
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + TF +D++E +LT+NR++ QR D+GIVS EDA +GFS
Sbjct: 164 GGVHQDLPRALIEDIAAWCDTFGPFMDDLEGLLTDNRIFKQRNVDIGIVSLEDAFAWGFS 223
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y+ EFDIPIG + + I M+EMRQS +I+ Q +
Sbjct: 224 GVMVRGSGAAWDLRKSQPYECYDELEFDIPIGKNCDNYDRYCIRMEEMRQSAKIMRQCCD 283
Query: 223 KM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
++ G V D KI P R EMK G+ VP G Y AVEAPKGEF
Sbjct: 284 RLLKESGPVSAVDNKIVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEF 343
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLV+DGT+KPYRCKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 344 GVYLVADGTNKPYRCKIRAPGFAHLQAMDFLCRGYMLADVSAIL 387
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + L +E+LL+IE
Sbjct: 37 GEIVERVDPHIGLLHRGTEKLIEAKTYLQAVPYFDRLDYVAPMNQEHAFCLGIERLLDIE 96
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 97 VPKRGQLIRVLYS 109
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
V+ +RN INFGPQHPAAHGVL L E+
Sbjct: 7 VDPNVRNFQINFGPQHPAAHGVLRLILEL 35
>gi|261324917|ref|ZP_05964114.1| NADH-quinone oxidoreductase subunit D [Brucella neotomae 5K33]
gi|261300897|gb|EEY04394.1| NADH-quinone oxidoreductase subunit D [Brucella neotomae 5K33]
Length = 396
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I +F L ++D++T NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPDQLIEDIGKWIDSFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIP+G +G+ +I M+EMRQS RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAIL 384
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E Y+LAVE+LL+IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPYLDRLDYVAPMNQEHAYALAVERLLDIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E Q+RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETQVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|399992237|ref|YP_006572477.1| NADH-quinone oxidoreductase subunit D [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
gi|398656792|gb|AFO90758.1| NADH-quinone oxidoreductase subunit D [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 404
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 201/285 (70%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 110 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + TF A +D+++ +LTENR++ QR D+G+V+ ED LNYGFS
Sbjct: 170 GGVHQDLPDALIDDIEAWTHTFPAVMDDIDGLLTENRIFKQRNADIGVVTEEDILNYGFS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ ++ M+EMRQSL I+ Q I
Sbjct: 230 GVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQCIG 289
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG + K++ P R +MK G+ VP G Y AVEAPKGE
Sbjct: 290 KLRETPGDILARG--KLTPPKRGDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGE 347
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR K++APGF HL A++ + KG LAD+ AII
Sbjct: 348 FGVYLVADGTNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAII 392
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 43 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 102
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 103 VPRRASLIRVLYS 115
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ + E++IRN INFGPQHPAAHGVL L E+
Sbjct: 8 DDALTGEQKIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|154248549|ref|YP_001419507.1| NADH dehydrogenase I subunit D [Xanthobacter autotrophicus Py2]
gi|218546715|sp|A7IPA4.1|NUOD_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|154162634|gb|ABS69850.1| NADH dehydrogenase I, D subunit [Xanthobacter autotrophicus Py2]
Length = 402
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 154/284 (54%), Positives = 202/284 (71%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 107 IRVLYSEIGRLLSHLLNVTTFAMDVGALTPPLWGFEEREKLMIFYERASGSRMHAAYFRP 166
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI F F LD+++ ++TENR++ QRT D+G+VS EDAL +GFS
Sbjct: 167 GGVHQDLPRALVEDIGAFCDPFLKLLDDLDGLVTENRIFKQRTVDIGVVSLEDALAWGFS 226
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y +FDIPIG HG+ V+ M+EMRQS +I++Q +
Sbjct: 227 GVMVRGSGAAWDLRRAQPYECYSELDFDIPIGKHGDCYDRYVVRMEEMRQSTKIMKQCVE 286
Query: 223 KM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
++ G V T D KI P R EMK G+ VP G Y AVEAPKGEF
Sbjct: 287 RLLKEAGPVSTTDNKIVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGDVYAAVEAPKGEF 346
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDGT+KPYRCKI+APGFAHL A++ + +G LAD+ A++
Sbjct: 347 GVYLVSDGTNKPYRCKIRAPGFAHLQAMDFLCRGHMLADVSAVL 390
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDY + M E + LA EKLL IE
Sbjct: 40 GEVVERVDPHIGLLHRGTEKLIEAKTYLQAVPYFDRLDYCAPMNQEHAFCLAAEKLLGIE 99
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 100 VPKRGQLIRVLYS 112
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 17 IINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+++ D + P +K +RN INFGPQHPAAHGVL L E+
Sbjct: 1 MVDIADEMKPADK-VRNFQINFGPQHPAAHGVLRLVLEL 38
>gi|359407446|ref|ZP_09199923.1| NADH dehydrogenase I, D subunit [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677485|gb|EHI49829.1| NADH dehydrogenase I, D subunit [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 392
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/285 (51%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RILNH++ + T A+DVGAMTP W FEERE +MEFYERASGAR+HAAY
Sbjct: 96 AQHIRVLYCEIGRILNHLLNLTTFAIDVGAMTPLLWGFEERETLMEFYERASGARLHAAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GL DDI + F + + ++E +LT NR++ QRT D+G++S E+AL+
Sbjct: 156 FRPGGVHQDLPDGLTDDILTWADNFPSFIADLETLLTNNRIFKQRTVDIGVLSTEEALDL 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G SG +LR +G WDLRK QPYD Y +FDIP+GT G+ ++ ++EM+QSLRI++Q
Sbjct: 216 GMSGPVLRATGHAWDLRKAQPYDCYAEMDFDIPVGTTGDCYARYLVRIEEMKQSLRIIKQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+I MPGG V ++ K++ P R EMK G+ +P G +YTAVEAPKGE
Sbjct: 276 SIETMPGGPVLAENNKVTPPRRGEMKQSMEALIHHFKLYTEGFHLPEGDSYTAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR +++APG+ +AA++ + +G LAD VAII
Sbjct: 336 FGVYLVADGTNKPYRARLRAPGYYFMAAVDYMSRGHMLADSVAII 380
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ DPH+GLLHRGTEKLIE KTY QALPYFDRLDYVS M E ++LAVEK LNI+
Sbjct: 32 GEIIDRADPHVGLLHRGTEKLIENKTYLQALPYFDRLDYVSPMNQEHAWALAVEKALNID 91
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV++
Sbjct: 92 VPKRAQHIRVLYC 104
Score = 44.3 bits (103), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E QIR + +NFGPQHPAAHGVL L E+
Sbjct: 3 EMQIRPLTLNFGPQHPAAHGVLRLVLEM 30
>gi|144899468|emb|CAM76332.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Magnetospirillum
gryphiswaldense MSR-1]
Length = 392
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/282 (52%), Positives = 197/282 (69%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ E+ RILNHI+ + + DVG MTP W FEEREK+MEFYERA GAR+HA Y R
Sbjct: 99 IRVLYCEMGRILNHILNICSFVFDVGGMTPMLWGFEEREKLMEFYERACGARLHANYFRV 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGVA D+P GLL+DI + + +D++E ++TENR++ QRT D+G VSAE AL++GF+
Sbjct: 159 GGVAQDLPAGLLEDIDAWCDQYPKVIDDIETLVTENRIFKQRTVDIGTVSAEQALDWGFT 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
G LR SGI WDLRK QPY+ Y+ +FDIP+G G+ +I + EMR+S++I++Q I
Sbjct: 219 GPNLRASGIAWDLRKSQPYEVYDRMDFDIPVGKVGDCYDRYLIRIIEMRESVKIMKQCIR 278
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+MP G V+ DD K+S P R+EMK G+ VP G Y AVEAPKGEF V
Sbjct: 279 EMPSGPVKVDDRKVSPPPRAEMKQSMEALIHHFKLFTEGFHVPAGEVYAAVEAPKGEFAV 338
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLV+DG++KPYRCKI+ PG+ HL AL+ + KG LAD+VA I
Sbjct: 339 YLVADGSNKPYRCKIRPPGYVHLQALDMMSKGHMLADVVANI 380
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 52/66 (78%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE+K YTQA PYFDRLDYV M E + +A EKLL + VPLR +Y
Sbjct: 39 DPHIGLLHRGTEKLIEHKIYTQATPYFDRLDYVGTMNQEHAFVMAAEKLLGVTVPLRGQY 98
Query: 370 IRVMFT 375
IRV++
Sbjct: 99 IRVLYC 104
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E QI++ INFGPQHPAAHGVL L E++
Sbjct: 3 ESQIKSYNINFGPQHPAAHGVLRLILEMS 31
>gi|421853773|ref|ZP_16286432.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371477991|dbj|GAB31635.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 426
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/280 (51%), Positives = 196/280 (70%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++FAEITR+LNHI+ + LD GA+TP W +EEREK++EFYE ASGAR HA Y RPGG
Sbjct: 135 VMFAEITRVLNHILNLTAMGLDCGAVTPALWGYEEREKLLEFYEAASGARFHANYFRPGG 194
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA D+P GL D I + F +DE+E +LTENR+W QRT +G+ + E AL +GFSG
Sbjct: 195 VARDVPAGLEDKIGAWAKEFPKWIDELEGLLTENRIWKQRTVGIGVFTTEQALAWGFSGP 254
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
LR SG+ WDLR+ QPYD Y EF++P+ G+ ++ + EMR+S++I+EQ ++++
Sbjct: 255 CLRASGVPWDLRRNQPYDNYHKVEFNVPVARQGDCYDRYLVRVAEMRESVKIIEQCLSQI 314
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
G+V+ D K S P R+EMK GY VPPGATYTAVE+PKGEFGVYL
Sbjct: 315 RPGDVKVQDPKFSPPPRAEMKRSMEALIHHFKLFSEGYHVPPGATYTAVESPKGEFGVYL 374
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+DG+++PYRCKI+ GFAHL A++++ + LAD+VAII
Sbjct: 375 VADGSNRPYRCKIRPTGFAHLQAIDELSRRGMLADMVAII 414
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PHIGLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LA EKLL I+
Sbjct: 66 GEVVARAVPHIGLLHRGTEKLIEYKTYQKALPYFDRLDYVSPMCEEQAFALATEKLLGID 125
Query: 363 VPLRAKYIRVMFT 375
+P RAK++RVMF
Sbjct: 126 IPERAKWLRVMFA 138
>gi|222085578|ref|YP_002544108.1| NADH dehydrogenase subunit D [Agrobacterium radiobacter K84]
gi|398376956|ref|ZP_10535136.1| NADH dehydrogenase I, D subunit [Rhizobium sp. AP16]
gi|221723026|gb|ACM26182.1| NADH-ubiquinone oxidoreductase chain D protein [Agrobacterium
radiobacter K84]
gi|397727283|gb|EJK87709.1| NADH dehydrogenase I, D subunit [Rhizobium sp. AP16]
Length = 396
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY+RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYIRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++D+LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEKLVQDIGDWCDPFLKALDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDCYDRYLIRMIEMRESVRIMKQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDAKTGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYCAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y+L+VEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYALSVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|85703209|ref|ZP_01034313.1| NADH dehydrogenase I, D subunit [Roseovarius sp. 217]
gi|85672137|gb|EAQ26994.1| NADH dehydrogenase I, D subunit [Roseovarius sp. 217]
Length = 406
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 203/285 (71%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 110 IRVLYCEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + + F LD+++ +LTENR++ QR D+G++S ++AL++GFS
Sbjct: 170 GGVHQDLPTELIDDIETWANEFPRVLDDIDGLLTENRIFKQRNADIGVISQQEALDWGFS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M+EMRQSLRI+ QAI
Sbjct: 230 GVMVRGSGMAWDLRRAQPYECYDEFDFLIPVGKNGDCYDRYLCRMEEMRQSLRIIHQAIE 289
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ E + + + KI+ P R+EMK G+ VP G Y AVEAPKGE
Sbjct: 290 KLRAPEGQGEILARGKITPPKRAEMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGE 349
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT++PYR KI+APGF HL A++ + KG LAD+ AII
Sbjct: 350 FGVYLVADGTNRPYRAKIRAPGFLHLQAMDHVAKGHQLADVAAII 394
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 43 GELVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 102
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV++
Sbjct: 103 VPRRASLIRVLYC 115
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ + E++IRN INFGPQHPAAHGVL L E+
Sbjct: 8 DDALTGEQKIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|182679350|ref|YP_001833496.1| NADH dehydrogenase I subunit D [Beijerinckia indica subsp. indica
ATCC 9039]
gi|218534355|sp|B2IHW4.1|NUOD1_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|182635233|gb|ACB96007.1| NADH dehydrogenase I, D subunit [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 396
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/284 (53%), Positives = 194/284 (68%), Gaps = 24/284 (8%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASGARMHA Y RPGG
Sbjct: 101 VLWCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARMHANYFRPGG 160
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
V +D P L+DDI + F D++ D+ ENR++ QR D+G++S ED +GFSGV
Sbjct: 161 VHIDCPQQLIDDIGAWCDPFLKVCDDLNDLFIENRIFKQRNVDIGVISLEDCWRWGFSGV 220
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
M+RGSG WDLRK QPY+ YE +FDIP+G HG+ VI M+EMRQS +I++Q + K+
Sbjct: 221 MVRGSGAAWDLRKAQPYECYEEMDFDIPVGRHGDNYDRQVIRMEEMRQSTKIMKQCVEKL 280
Query: 225 P----GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
G V T K+ PSR+EMK G+ VP G Y VEAPKGEF
Sbjct: 281 SQASGKGPVATPQHKVVPPSRAEMKRSMEALIHHFKLYTEGFHVPAGEVYCGVEAPKGEF 340
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDGT KPYRCKI+APGFAHL+A++ + + S LAD+ AI+
Sbjct: 341 GVYLVSDGTDKPYRCKIRAPGFAHLSAMDFLCRKSMLADVSAIL 384
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E +TY Q +PYFDRLDYV+ M E + LA+EKLL IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMEARTYLQNVPYFDRLDYVAPMNQEHAFCLAIEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + +RV++
Sbjct: 92 VPRRGQLLRVLWC 104
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +RN INFGPQHPAAHGVL L E+
Sbjct: 3 DNPVRNFAINFGPQHPAAHGVLRLVLEL 30
>gi|17987438|ref|NP_540072.1| NADH dehydrogenase subunit D [Brucella melitensis bv. 1 str. 16M]
gi|260563838|ref|ZP_05834324.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. 16M]
gi|265990908|ref|ZP_06103465.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. Rev.1]
gi|81851726|sp|Q8YGK3.1|NUOD_BRUME RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|17983131|gb|AAL52336.1| NADH-quinone oxidoreductase chain d [Brucella melitensis bv. 1 str.
16M]
gi|260153854|gb|EEW88946.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. 16M]
gi|263001692|gb|EEZ14267.1| NADH-quinone oxidoreductase subunit D [Brucella melitensis bv. 1
str. Rev.1]
Length = 396
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F L ++D++T NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPDQLIEDIGKWIDPFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIP+G +G+ +I M+EMRQS+RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSVRIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAIL 384
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E Y+LAVE+LL+IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPYLDRLDYVAPMNQEHAYALAVERLLDIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E Q+RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETQVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|338981059|ref|ZP_08632295.1| NADH-quinone oxidoreductase subunit D [Acidiphilium sp. PM]
gi|338208025|gb|EGO95924.1| NADH-quinone oxidoreductase subunit D [Acidiphilium sp. PM]
Length = 406
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/285 (50%), Positives = 197/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++ ALD+GA +P W +EEREK++ F+E SGAR HA Y
Sbjct: 110 AQWIRVLFAEITRILNHLLNAVHLALDIGAQSPSLWGYEEREKLLTFHEAVSGARFHANY 169
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+P GL + I+ + F LD+++ +L ENR++ QR D+G++SAEDAL
Sbjct: 170 FRPGGVSKDMPTGLAEQIWEWSEKFPKFLDDLQSLLNENRIFRQRLVDIGVISAEDALAM 229
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG LR SGI WDLR+ QPYD Y+ +FDIP+G HG+ ++ ++EM +SL+I+ Q
Sbjct: 230 GFSGPNLRASGIAWDLRRAQPYDKYDEVDFDIPVGRHGDSFDRYLVRIREMAESLKIIRQ 289
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A+ MP G ++ D KI+ P R+EMK GY VP G TYTAVEAPKGE
Sbjct: 290 ALKAMPEGPIKVQDHKITPPKRAEMKRSMEALIHHFKLYTEGYHVPAGTTYTAVEAPKGE 349
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+A GF+HL A+ + KG LAD +A++
Sbjct: 350 FGVYLVADGSNRPYRCKIRATGFSHLQAMNLMSKGHLLADAIAVL 394
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKLIEYK+Y QA+PYFDRLDYVS MC E ++LA E+LL ++
Sbjct: 46 GETVTRADPHIGLLHRGTEKLIEYKSYLQAVPYFDRLDYVSPMCCEHAFALATERLLGVK 105
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F
Sbjct: 106 VPERAQWIRVLFA 118
>gi|217979052|ref|YP_002363199.1| NADH dehydrogenase I subunit D [Methylocella silvestris BL2]
gi|217504428|gb|ACK51837.1| NADH dehydrogenase I, D subunit [Methylocella silvestris BL2]
Length = 394
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/283 (54%), Positives = 196/283 (69%), Gaps = 23/283 (8%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y RPGG
Sbjct: 100 VLFCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHANYFRPGG 159
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
V +DIP L+DDI + F D+++ + +NR++ QR D+GIVS ED +GFSGV
Sbjct: 160 VHMDIPAQLIDDIEAWCDPFLKTCDDLQALFIDNRIFKQRNVDIGIVSLEDCWAWGFSGV 219
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
M+RGSG WDLRK QPY+ YE EFDIP+G HG+ VI M+EMRQS+ I++Q + K+
Sbjct: 220 MVRGSGAAWDLRKAQPYECYEEMEFDIPVGRHGDNYDRQVIRMEEMRQSVSIMKQCVAKL 279
Query: 225 --PGGEVRT-DDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFG 266
P G+ K + PSR EMK G+ VP G Y AVEAPKGEFG
Sbjct: 280 REPAGQGPVLAKGKFAPPSRGEMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 339
Query: 267 VYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VYLVSDGT+KPYRCKI+APGFAHLAA++ + + S LAD+ AI+
Sbjct: 340 VYLVSDGTNKPYRCKIRAPGFAHLAAMDFLCRKSMLADVSAIL 382
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E +TY Q +PYFDRLDYV+ M E + LA+EKL+ +E
Sbjct: 31 GEVVERVDPHIGLLHRGTEKLMEARTYLQNVPYFDRLDYVAPMNQEHAFCLAIEKLVGLE 90
Query: 363 VPLRAKYIRVMFT 375
P RA+ +RV+F
Sbjct: 91 APRRAQLLRVLFC 103
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
Q+RN INFGPQHPAAHGVL L E+
Sbjct: 4 QVRNFTINFGPQHPAAHGVLRLVLEL 29
>gi|148259935|ref|YP_001234062.1| NADH dehydrogenase subunit D [Acidiphilium cryptum JF-5]
gi|326403111|ref|YP_004283192.1| NADH-quinone oxidoreductase subunit D [Acidiphilium multivorum
AIU301]
gi|218534378|sp|A5FX11.1|NUOD_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146401616|gb|ABQ30143.1| NADH dehydrogenase subunit D [Acidiphilium cryptum JF-5]
gi|325049972|dbj|BAJ80310.1| NADH-quinone oxidoreductase subunit D [Acidiphilium multivorum
AIU301]
Length = 406
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 145/285 (50%), Positives = 197/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++ ALD+GA +P W +EEREK++ F+E SGAR HA Y
Sbjct: 110 AQWIRVLFAEITRILNHLLNAVHLALDIGAQSPSLWGYEEREKLLTFHEAVSGARFHANY 169
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+P GL + I+ + F LD+++ +L ENR++ QR D+G++SAEDAL
Sbjct: 170 FRPGGVSKDMPTGLAEQIWEWSEKFPKFLDDLQSLLNENRIFRQRLVDIGVISAEDALAM 229
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG LR SGI WDLR+ QPYD Y+ +FDIP+G HG+ ++ ++EM +SL+I+ Q
Sbjct: 230 GFSGPNLRASGIAWDLRRAQPYDKYDEVDFDIPVGRHGDSFDRYLVRIREMAESLKIIRQ 289
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
A+ MP G ++ D KI+ P R+EMK GY VP G TYTAVEAPKGE
Sbjct: 290 ALKAMPEGPIKVQDHKITPPKRAEMKRSMEALIHHFKLYTEGYHVPAGTTYTAVEAPKGE 349
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+A GF+HL A+ + KG LAD +A++
Sbjct: 350 FGVYLVADGSNRPYRCKIRATGFSHLQAMNLMSKGHLLADAIAVL 394
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKLIEYK+Y QA+PYFDRLDYVS MC E ++LA E+LL ++
Sbjct: 46 GETVTRADPHIGLLHRGTEKLIEYKSYLQAVPYFDRLDYVSPMCCEHAFALATERLLGVK 105
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F
Sbjct: 106 VPERAQWIRVLFA 118
>gi|258542719|ref|YP_003188152.1| NADH dehydrogenase subunit D [Acetobacter pasteurianus IFO 3283-01]
gi|384042640|ref|YP_005481384.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-12]
gi|384051157|ref|YP_005478220.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-03]
gi|384054265|ref|YP_005487359.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-07]
gi|384057499|ref|YP_005490166.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-22]
gi|384060140|ref|YP_005499268.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-26]
gi|384063432|ref|YP_005484074.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-32]
gi|384119442|ref|YP_005502066.1| NADH-quinone oxidoreductase subunit D [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256633797|dbj|BAH99772.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-01]
gi|256636856|dbj|BAI02825.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-03]
gi|256639909|dbj|BAI05871.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-07]
gi|256642965|dbj|BAI08920.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-22]
gi|256646020|dbj|BAI11968.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-26]
gi|256649073|dbj|BAI15014.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-32]
gi|256652060|dbj|BAI17994.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655117|dbj|BAI21044.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus IFO
3283-12]
Length = 426
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 145/280 (51%), Positives = 195/280 (69%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++FAEITR+LNHI+ + LD GA+TP W +EEREK++EFYE ASGAR HA Y RPGG
Sbjct: 135 VMFAEITRVLNHILNLTAMGLDCGAVTPALWGYEEREKLLEFYEAASGARFHANYFRPGG 194
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA D+P GL D I + F +DE+E +LTENR+W QRT +G+ + E AL +GFSG
Sbjct: 195 VARDVPAGLEDKIGAWAKEFPKWIDELEGLLTENRIWKQRTVGIGVFTTEQALAWGFSGP 254
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
LR SG+ WDLR+ QPYD Y EF++P+ G+ ++ + EMR+S++I+EQ + ++
Sbjct: 255 CLRASGVPWDLRRNQPYDNYHKVEFNVPVARQGDCYDRYLVRVAEMRESVKIIEQCLTQI 314
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
G+V+ D K S P R+EMK GY VPPGATYTAVE+PKGEFGVYL
Sbjct: 315 RPGDVKVQDPKFSPPPRAEMKRSMEALIHHFKLFSEGYHVPPGATYTAVESPKGEFGVYL 374
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+DG+++PYRCKI+ GFAHL A++++ + LAD+VAII
Sbjct: 375 VADGSNRPYRCKIRPTGFAHLQAIDELSRRGMLADMVAII 414
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PHIGLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LA EKLL I+
Sbjct: 66 GEVVARAVPHIGLLHRGTEKLIEYKTYQKALPYFDRLDYVSPMCEEQAFALATEKLLGID 125
Query: 363 VPLRAKYIRVMFT 375
+P RAK++RVMF
Sbjct: 126 IPERAKWLRVMFA 138
>gi|409436900|ref|ZP_11264059.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Rhizobium mesoamericanum STM3625]
gi|408751374|emb|CCM75213.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Rhizobium mesoamericanum STM3625]
Length = 406
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 201/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+HIM V T A+DVGAMTP W FEEREK+M FYERA GARMH+AY RP
Sbjct: 109 IRVLYSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYFRP 168
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DIP L++DI + F LD++E +LT+NR++ QR D+G+VS DA ++GFS
Sbjct: 169 GGVHQDIPPELVEDIGKWCDPFLKVLDDIEGLLTDNRIFKQRNVDIGVVSLADAWSWGFS 228
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMRQS+RI++Q +
Sbjct: 229 GVMVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDCYDRYLIRMIEMRQSVRIMKQCVE 288
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 289 RLMGSSLTGPVSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 348
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVY+V+DG++KPYRCKI+APG+AHL A++ + KG LAD+ A++
Sbjct: 349 EFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHMLADVTAVL 394
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEK+L +E
Sbjct: 42 GEIIERVDPHIGLLHRGTEKLIESKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKMLKLE 101
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 102 IPIRGQLIRVLYS 114
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
E +RN INFGP+HP+AHGVL L E I R+ HI
Sbjct: 13 EHNVRNFTINFGPEHPSAHGVLRLVLELDGEIIERVDPHI 52
>gi|325292636|ref|YP_004278500.1| NADH dehydrogenase I subunit D [Agrobacterium sp. H13-3]
gi|418406789|ref|ZP_12980108.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens 5A]
gi|325060489|gb|ADY64180.1| NADH dehydrogenase I chain D [Agrobacterium sp. H13-3]
gi|358007282|gb|EHJ99605.1| NADH dehydrogenase subunit D [Agrobacterium tumefaciens 5A]
Length = 396
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+HIM V T A+DVGAMTP W FEEREK+M FYERA GARMH+AYVRP
Sbjct: 99 IRVLYSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F LD +E +LT+NR++ QR D+G+VS EDA +GF+
Sbjct: 159 GGVHQDLPPELVEDIGKWCDPFITVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFT 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIP+G +G+ +I M+EMR+S++I++Q ++
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLSGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVY+V+DG++KPYRCKI+APG+AHL A++ + KG LAD+ A++
Sbjct: 339 EFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVL 384
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEKLL +E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPMRGQLIRVLYS 104
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGP+HP+AHGVL L E+
Sbjct: 3 EHNVRNFTINFGPEHPSAHGVLRLVLEL 30
>gi|406706133|ref|YP_006756486.1| NADH dehydrogenase subunit D [alpha proteobacterium HIMB5]
gi|406651909|gb|AFS47309.1| NADH dehydrogenase subunit D [alpha proteobacterium HIMB5]
Length = 391
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 144/285 (50%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EI RIL+HI+ V T ALDVGA+TP W FEERE +M FYERASG+R+HA Y
Sbjct: 95 AQFIRVIFCEIGRILSHILNVTTQALDVGALTPSLWGFEERETLMTFYERASGSRLHANY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P GL +DI F TF ++++E++LT+NR++ QR D+G+V+ EDAL++
Sbjct: 155 FRAGGVHQDLPRGLENDIAKFCETFPKVINDLENLLTDNRIFKQRNVDIGVVTKEDALDH 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
F+GVM+RGSGI WDLRK QPYD Y+ EF IP+G +G+ + ++EM++S+ I++Q
Sbjct: 215 SFTGVMIRGSGIPWDLRKSQPYDCYDQLEFKIPVGKNGDCYDRYLCRIEEMKESISIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ KM G +++ D KIS PS+ ++K GY VP YTAVEAPKGE
Sbjct: 275 CLAKMEKGPIKSLDGKISPPSKKDLKQSMEALIHHFKLFTEGYRVPKDEIYTAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+SDG++KPY+CKI+APGF+HL +++ + +G LAD+ AI+
Sbjct: 335 FGVYLISDGSNKPYKCKIRAPGFSHLQSMDYLIRGHMLADVPAIL 379
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LA+EK+L IE
Sbjct: 31 GEVVEKADPHIGLLHRGTEKLIENKTYMQAVPYFDRLDYVAPMNQEHAFALAIEKILEIE 90
Query: 363 VPLRAKYIRVMFT 375
VP+RA++IRV+F
Sbjct: 91 VPIRAQFIRVIFC 103
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K+I+N+ +NFGPQHPAAHGVL L E+
Sbjct: 3 KKIKNLNLNFGPQHPAAHGVLRLILEL 29
>gi|315499791|ref|YP_004088594.1| NADH dehydrogenase i, d subunit [Asticcacaulis excentricus CB 48]
gi|315417803|gb|ADU14443.1| NADH dehydrogenase I, D subunit [Asticcacaulis excentricus CB 48]
Length = 419
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 147/287 (51%), Positives = 203/287 (70%), Gaps = 22/287 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EI RIL+H++ + T A+DVGA+TP W FEEREK+M FYERA GAR+HA Y
Sbjct: 121 AQLIRVLFSEIGRILSHLLNITTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHANY 180
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+ L+DDI + F L ++E ++TENR++ QR D+G+VS ++A ++
Sbjct: 181 FRPGGVHQDLTTELIDDIEQWCKEFPRALADIESLVTENRIFKQRNVDIGVVSKQEAYDW 240
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+GVM+RGSGI+WDLRK QPY+ Y+ +FDI IG +G+ + ++EMRQ+++I+EQ
Sbjct: 241 GFTGVMIRGSGIEWDLRKSQPYECYDELDFDIVIGKNGDCWDRYLCRVEEMRQAVKIMEQ 300
Query: 220 AINKM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+ K+ GGEV D KI+ P R++MK G+ PPG Y AVEAPK
Sbjct: 301 CVEKLRVTGGEVLATDHKITPPRRADMKNSMEALIHHFKLYTEGFKTPPGEVYAAVEAPK 360
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG++KPYRCKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 361 GEFGVYLVSDGSNKPYRCKIRAPGFAHLQAMDWMNRGHLLADVSAIL 407
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKL+EY+TY Q PYFDRLDYV+ M E + LA+E+LL +E
Sbjct: 57 GEIVERVDPHIGLLHRGTEKLMEYRTYLQNTPYFDRLDYVAPMNQEHAFCLAIERLLGLE 116
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+F+
Sbjct: 117 VPKRAQLIRVLFS 129
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
R INFGPQHPAAHGVL L ++
Sbjct: 32 RKFTINFGPQHPAAHGVLRLVLDL 55
>gi|452964821|gb|EME69854.1| NADH dehydrogenase subunit D [Magnetospirillum sp. SO-1]
Length = 392
Score = 304 bits (778), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 194/279 (69%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L+ EI RILNH++ V DVG MTP + FEEREK+MEFYER GAR+HA Y RPGGV
Sbjct: 102 LYDEIGRILNHLLNVTAFIFDVGGMTPLLYGFEEREKLMEFYERVCGARLHANYYRPGGV 161
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DI + TF LD++E + T+NR++ QR D+G+V+A+ AL++GF+G
Sbjct: 162 AADLPAGLLEDIAAWCETFPKVLDDIETLATDNRIFKQRVVDIGVVTADQALDWGFTGPN 221
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LR SGI WDLRK QPYD Y+ +FDIP+G +G+ ++ + EMR+S++I++Q I KMP
Sbjct: 222 LRASGIAWDLRKAQPYDVYDQMDFDIPVGKNGDGYDRYLVRVLEMRESVKIMKQCIAKMP 281
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G V+ +D KI+ P RSEMK G+ VP G Y A+EAPKGEF VYL+
Sbjct: 282 NGPVKVEDNKITPPRRSEMKTSMESLIHHFKLFTEGFRVPAGEVYAAIEAPKGEFAVYLI 341
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+DGT KPYRCKI+ PG+ HL AL+ + KG LAD+V+ I
Sbjct: 342 ADGTGKPYRCKIRPPGYVHLQALDMMSKGHMLADVVSNI 380
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKLIE+KTY QA PYFDRLDYV M E + LA EKLL I+
Sbjct: 32 GEVVDRADPHVGLLHRGTEKLIEHKTYLQATPYFDRLDYVGTMNQEHAFVLATEKLLGID 91
Query: 363 VPLRAKYIRVMF 374
+P+RAK+IR ++
Sbjct: 92 IPIRAKFIRTLY 103
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E QI++ INFGPQHPAAHGVL L E++
Sbjct: 3 ESQIQSYTINFGPQHPAAHGVLRLILEMS 31
>gi|148558949|ref|YP_001258783.1| NADH dehydrogenase subunit D [Brucella ovis ATCC 25840]
gi|161618769|ref|YP_001592656.1| NADH dehydrogenase subunit D [Brucella canis ATCC 23365]
gi|163843078|ref|YP_001627482.1| NADH dehydrogenase subunit D [Brucella suis ATCC 23445]
gi|225627302|ref|ZP_03785339.1| NADH dehydrogenase I, D subunit [Brucella ceti str. Cudo]
gi|225852321|ref|YP_002732554.1| NADH dehydrogenase subunit D [Brucella melitensis ATCC 23457]
gi|256264180|ref|ZP_05466712.1| pectinesterase [Brucella melitensis bv. 2 str. 63/9]
gi|256369237|ref|YP_003106745.1| NADH dehydrogenase subunit D [Brucella microti CCM 4915]
gi|260566631|ref|ZP_05837101.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 4 str. 40]
gi|260754559|ref|ZP_05866907.1| NADH dehydrogenase subunit D [Brucella abortus bv. 6 str. 870]
gi|260883586|ref|ZP_05895200.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 9 str.
C68]
gi|261213808|ref|ZP_05928089.1| NADH dehydrogenase subunit D [Brucella abortus bv. 3 str. Tulya]
gi|261218835|ref|ZP_05933116.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M13/05/1]
gi|261221995|ref|ZP_05936276.1| NADH-quinone oxidoreductase subunit D [Brucella ceti B1/94]
gi|261314443|ref|ZP_05953640.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M163/99/10]
gi|261317459|ref|ZP_05956656.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
B2/94]
gi|261321666|ref|ZP_05960863.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M644/93/1]
gi|261752126|ref|ZP_05995835.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 5 str.
513]
gi|261754786|ref|ZP_05998495.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 3 str.
686]
gi|261758013|ref|ZP_06001722.1| NADH dehydrogenase subunit D [Brucella sp. F5/99]
gi|265988495|ref|ZP_06101052.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M292/94/1]
gi|265997959|ref|ZP_06110516.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M490/95/1]
gi|297248159|ref|ZP_06931877.1| NADH dehydrogenase (quinone), D subunit [Brucella abortus bv. 5
str. B3196]
gi|340790436|ref|YP_004755901.1| NADH dehydrogenase subunit delta [Brucella pinnipedialis B2/94]
gi|376274450|ref|YP_005114889.1| NADH dehydrogenase I subunit D [Brucella canis HSK A52141]
gi|384211181|ref|YP_005600263.1| NADH dehydrogenase I subunit D [Brucella melitensis M5-90]
gi|384408281|ref|YP_005596902.1| NADH dehydrogenase subunit D [Brucella melitensis M28]
gi|384444886|ref|YP_005603605.1| NADH dehydrogenase I subunit D [Brucella melitensis NI]
gi|218534393|sp|A9MAI2.1|NUOD_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534394|sp|A5VPY6.1|NUOD_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534395|sp|B0CLD2.1|NUOD_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|148370206|gb|ABQ60185.1| NADH dehydrogenase I, D subunit [Brucella ovis ATCC 25840]
gi|161335580|gb|ABX61885.1| NADH dehydrogenase I, D subunit [Brucella canis ATCC 23365]
gi|163673801|gb|ABY37912.1| NADH dehydrogenase I, D subunit [Brucella suis ATCC 23445]
gi|225617307|gb|EEH14352.1| NADH dehydrogenase I, D subunit [Brucella ceti str. Cudo]
gi|225640686|gb|ACO00600.1| NADH dehydrogenase I, D subunit [Brucella melitensis ATCC 23457]
gi|255999397|gb|ACU47796.1| NADH dehydrogenase delta subunit [Brucella microti CCM 4915]
gi|260156149|gb|EEW91229.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 4 str. 40]
gi|260674667|gb|EEX61488.1| NADH dehydrogenase subunit D [Brucella abortus bv. 6 str. 870]
gi|260873114|gb|EEX80183.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 9 str.
C68]
gi|260915415|gb|EEX82276.1| NADH dehydrogenase subunit D [Brucella abortus bv. 3 str. Tulya]
gi|260920579|gb|EEX87232.1| NADH-quinone oxidoreductase subunit D [Brucella ceti B1/94]
gi|260923924|gb|EEX90492.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M13/05/1]
gi|261294356|gb|EEX97852.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M644/93/1]
gi|261296682|gb|EEY00179.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
B2/94]
gi|261303469|gb|EEY06966.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M163/99/10]
gi|261737997|gb|EEY25993.1| NADH dehydrogenase subunit D [Brucella sp. F5/99]
gi|261741879|gb|EEY29805.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 5 str.
513]
gi|261744539|gb|EEY32465.1| NADH-quinone oxidoreductase subunit D [Brucella suis bv. 3 str.
686]
gi|262552427|gb|EEZ08417.1| NADH-quinone oxidoreductase subunit D [Brucella ceti M490/95/1]
gi|263094398|gb|EEZ18243.1| pectinesterase [Brucella melitensis bv. 2 str. 63/9]
gi|264660692|gb|EEZ30953.1| NADH-quinone oxidoreductase subunit D [Brucella pinnipedialis
M292/94/1]
gi|297175328|gb|EFH34675.1| NADH dehydrogenase (quinone), D subunit [Brucella abortus bv. 5
str. B3196]
gi|326408828|gb|ADZ65893.1| NADH dehydrogenase subunit D [Brucella melitensis M28]
gi|326538544|gb|ADZ86759.1| NADH dehydrogenase I, D subunit [Brucella melitensis M5-90]
gi|340558895|gb|AEK54133.1| NADH dehydrogenase, delta subunit [Brucella pinnipedialis B2/94]
gi|349742880|gb|AEQ08423.1| NADH dehydrogenase I, D subunit [Brucella melitensis NI]
gi|363403017|gb|AEW13312.1| NADH dehydrogenase I, D subunit [Brucella canis HSK A52141]
Length = 396
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F L ++D++T NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPDQLIEDIGKWIDPFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIP+G +G+ +I M+EMRQS RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAIL 384
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E Y+LAVE+LL+IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPYLDRLDYVAPMNQEHAYALAVERLLDIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E Q+RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETQVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|23501692|ref|NP_697819.1| NADH dehydrogenase subunit D [Brucella suis 1330]
gi|376280485|ref|YP_005154491.1| NADH dehydrogenase subunit D [Brucella suis VBI22]
gi|384224479|ref|YP_005615643.1| NADH dehydrogenase subunit D [Brucella suis 1330]
gi|81752803|sp|Q8G1B4.1|NUOD_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|23347614|gb|AAN29734.1| NADH dehydrogenase I, D subunit [Brucella suis 1330]
gi|343382659|gb|AEM18151.1| NADH dehydrogenase subunit D [Brucella suis 1330]
gi|358258084|gb|AEU05819.1| NADH dehydrogenase subunit D [Brucella suis VBI22]
Length = 396
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F L ++D++T NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPDQLIEDIGKWIDPFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIP+G +G+ +I M+EMRQS RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKERVGPVSNTDHKIVPPKRGEMKCSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAIL 384
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E Y+LAVE+LL+IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPYLDRLDYVAPMNQEHAYALAVERLLDIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E Q+RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETQVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|405381787|ref|ZP_11035610.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF142]
gi|397321674|gb|EJJ26089.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF142]
Length = 396
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 201/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F +LD+++D+LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEQLVQDIGKWCDEFPGKLDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S++I++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVKIMKQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDAKAGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y++AVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYAMAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|265983901|ref|ZP_06096636.1| NADH-quinone oxidoreductase subunit D [Brucella sp. 83/13]
gi|306838238|ref|ZP_07471090.1| NADH dehydrogenase I, D subunit [Brucella sp. NF 2653]
gi|306841957|ref|ZP_07474634.1| NADH dehydrogenase I, D subunit [Brucella sp. BO2]
gi|306843742|ref|ZP_07476341.1| NADH dehydrogenase I, D subunit [Brucella inopinata BO1]
gi|264662493|gb|EEZ32754.1| NADH-quinone oxidoreductase subunit D [Brucella sp. 83/13]
gi|306275933|gb|EFM57646.1| NADH dehydrogenase I, D subunit [Brucella inopinata BO1]
gi|306287948|gb|EFM59359.1| NADH dehydrogenase I, D subunit [Brucella sp. BO2]
gi|306406682|gb|EFM62909.1| NADH dehydrogenase I, D subunit [Brucella sp. NF 2653]
Length = 396
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F L ++D++T NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPDQLIEDIGKWIDPFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIP+G +G+ +I M+EMRQS RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAIL 384
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E Y+LAVE+LL IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPYLDRLDYVAPMNQEHAYALAVERLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E Q+RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETQVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|167646795|ref|YP_001684458.1| NADH dehydrogenase subunit D [Caulobacter sp. K31]
gi|218534396|sp|B0SZ49.1|NUOD_CAUSK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|167349225|gb|ABZ71960.1| NADH dehydrogenase I, D subunit [Caulobacter sp. K31]
Length = 416
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 149/284 (52%), Positives = 199/284 (70%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HA Y RP
Sbjct: 121 IRVLFCEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHANYFRP 180
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ L+DDI + F D++E ++T+NR++ QR D+G+V+ EDAL +GFS
Sbjct: 181 GGVHQDLTPSLIDDIEKWAKAFPKICDDIEGLITDNRIFKQRNVDIGVVTKEDALAWGFS 240
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSGI WDLR+ QPY+ Y +FEFDIP+G +G+ + M+EMR+S +I+ QAI
Sbjct: 241 GVMVRGSGIAWDLRRNQPYECYNDFEFDIPLGKNGDCYDRYLCRMQEMRESTKIILQAIE 300
Query: 223 KMPG--GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G V T D K++ P R+EMK G+ P G Y VEAPKGEF
Sbjct: 301 KLRATPGPVMTQDNKVAPPRRAEMKRSMEALIHHFKLYTEGFRTPEGEVYACVEAPKGEF 360
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GV+LVS+GT+KPYRCKIKAPGF+HLAA++ + +G LAD+ AI+
Sbjct: 361 GVFLVSNGTNKPYRCKIKAPGFSHLAAMDWMNRGHQLADVSAIL 404
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKL+E +TY Q +PYFDRLDYV+ M E + LA+EKLL ++
Sbjct: 54 GEIVERVDPHIGLLHRGTEKLMEARTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGVD 113
Query: 363 VPLRAKYIRVMFT 375
VPLR IRV+F
Sbjct: 114 VPLRGSLIRVLFC 126
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +R INFGPQHPAAHGVL L E+
Sbjct: 25 ETPVRKFNINFGPQHPAAHGVLRLVLEL 52
>gi|399036617|ref|ZP_10733623.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF122]
gi|398065786|gb|EJL57402.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF122]
Length = 396
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 201/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+HIM V T A+DVGAMTP W FEEREK+M FYERA GARMH+AY RP
Sbjct: 99 IRVLYSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DIP L++DI + F LD++E +LT+NR++ QR D+G+VS DA ++GFS
Sbjct: 159 GGVHQDIPPELVEDIGKWCDPFLKILDDIEGLLTDNRIFKQRNVDIGVVSLADAWSWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMRQS+RI++Q +
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYNDMEFDIPIGKNGDCYDRYLIRMIEMRQSVRIMKQCVE 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLMGSAKTGPVSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVY+V+DG++KPYRCKI+APG+AHL A++ + KG LAD+ A++
Sbjct: 339 EFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHMLADVTAVL 384
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEK+L +E
Sbjct: 32 GEIIERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKMLKLE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
E +RN INFGP+HP+AHGVL L E I R+ HI
Sbjct: 3 EHNVRNFTINFGPEHPSAHGVLRLVLELDGEIIERVDPHI 42
>gi|15965020|ref|NP_385373.1| NADH dehydrogenase subunit D [Sinorhizobium meliloti 1021]
gi|334315810|ref|YP_004548429.1| NAD(P)H-quinone oxidoreductase subunit H [Sinorhizobium meliloti
AK83]
gi|384528979|ref|YP_005713067.1| NAD(P)H-quinone oxidoreductase subunit H [Sinorhizobium meliloti
BL225C]
gi|384536741|ref|YP_005720826.1| probabable NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium
meliloti SM11]
gi|407720211|ref|YP_006839873.1| NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium meliloti
Rm41]
gi|418402647|ref|ZP_12976155.1| NADH dehydrogenase subunit D [Sinorhizobium meliloti CCNWSX0020]
gi|433613041|ref|YP_007189839.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti GR4]
gi|7387955|sp|P56907.1|NUOD1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|5650737|emb|CAB51623.1| nuoD1 [Sinorhizobium meliloti]
gi|15074199|emb|CAC45846.1| Probable NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium
meliloti 1021]
gi|333811155|gb|AEG03824.1| NAD(P)H-quinone oxidoreductase subunit H [Sinorhizobium meliloti
BL225C]
gi|334094804|gb|AEG52815.1| NAD(P)H-quinone oxidoreductase subunit H [Sinorhizobium meliloti
AK83]
gi|336033633|gb|AEH79565.1| probabable NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium
meliloti SM11]
gi|359503388|gb|EHK75942.1| NADH dehydrogenase subunit D [Sinorhizobium meliloti CCNWSX0020]
gi|407318443|emb|CCM67047.1| NADH-quinone oxidoreductase subunit D 1 [Sinorhizobium meliloti
Rm41]
gi|429551231|gb|AGA06240.1| NADH dehydrogenase I, D subunit [Sinorhizobium meliloti GR4]
Length = 396
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI ++I F +D+++++LT NR++ QR D+G+VS EDA +GFS
Sbjct: 159 GGVHQDLPHQLVEDIGNWIDPFLKTVDDIDELLTGNRIFKQRNVDIGVVSLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMRQS RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDCFDRYLIRMIEMRQSARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDAKIGPVSSLDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVL 384
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVE+L +
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDYVAPMNQEHAFALAVERLTGTQ 91
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 92 VPIRGQLIRVLYS 104
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|254476027|ref|ZP_05089413.1| NADH dehydrogenase (quinone), D subunit [Ruegeria sp. R11]
gi|214030270|gb|EEB71105.1| NADH dehydrogenase (quinone), D subunit [Ruegeria sp. R11]
Length = 403
Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 201/285 (70%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 109 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHAAYFRP 168
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + TF A +D+++ +LTENR++ QR D+G+V+ ED LNYGFS
Sbjct: 169 GGVHQDLPDALIDDIEAWTYTFPAVMDDIDGLLTENRIFKQRNADIGVVTEEDILNYGFS 228
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ ++ M+EMRQSL I+ Q I
Sbjct: 229 GVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQCIG 288
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG + K++ P R +MK G+ VP G Y AVEAPKGE
Sbjct: 289 KLRETPGDVLARG--KLTPPKRGDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGE 346
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR K++APG+ HL A++ + KG LAD+ AII
Sbjct: 347 FGVYLVADGTNKPYRAKLRAPGYLHLQAMDYVAKGHQLADVAAII 391
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 42 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 101
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 102 VPRRASLIRVLYS 114
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ + E++IRN INFGPQHPAAHGVL L E+
Sbjct: 7 DDALTGEQKIRNFNINFGPQHPAAHGVLRLVLEL 40
>gi|312116346|ref|YP_004013942.1| NADH dehydrogenase I subunit D [Rhodomicrobium vannielii ATCC
17100]
gi|311221475|gb|ADP72843.1| NADH dehydrogenase I, D subunit [Rhodomicrobium vannielii ATCC
17100]
Length = 415
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 204/286 (71%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T ALD+GA+TP W FEEREK+M FYERASGAR+HA Y RP
Sbjct: 118 IRVLFSEIGRILNHLLNVTTFALDLGALTPPLWGFEEREKLMVFYERASGARLHANYFRP 177
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + +F L +++ +LT+NR++ QRT D+G+VS EDA+ +GF+
Sbjct: 178 GGVHQDLPQALIDDIEAWCDSFLKVLADLDTLLTDNRIFKQRTVDIGVVSLEDAMAWGFT 237
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
G M+RGSG WDLRK QPY+ Y + +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 238 GTMIRGSGAAWDLRKSQPYECYADLDFDIPIGKNGDNWDRYLIRMEEMRQSIRIMKQCIE 297
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ P G+ V + K++ P R EMK G+ VP G Y AVEAPKG
Sbjct: 298 RLNSPAGKGPVILPNNKVTPPRREEMKRSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKG 357
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT++PYRCKI+APGF HLAA++ + KG LAD+ AI+
Sbjct: 358 EFGVYLVADGTNRPYRCKIRAPGFPHLAAMDFLCKGHMLADVAAIL 403
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYV+ M E + LA+EKLL +
Sbjct: 51 GEVVHRVDPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVAPMNQEHAFCLAIEKLLGVT 110
Query: 363 VPLRAKYIRVMFT 375
P+R + IRV+F+
Sbjct: 111 PPIRGQLIRVLFS 123
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
RN INFGPQHPAAHGVL L E+
Sbjct: 26 RNFTINFGPQHPAAHGVLRLILEL 49
>gi|294852162|ref|ZP_06792835.1| NADH dehydrogenase [Brucella sp. NVSL 07-0026]
gi|294820751|gb|EFG37750.1| NADH dehydrogenase [Brucella sp. NVSL 07-0026]
Length = 396
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 195/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F L + D++T NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPDQLIEDIGKWIDPFFTTLKNLHDLITPNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIP+G +G+ +I M+EMRQS RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAIL 384
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E Y+LAVE+LL+IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPYLDRLDYVAPMNQEHAYALAVERLLDIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E Q+RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETQVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|170748475|ref|YP_001754735.1| NADH dehydrogenase I subunit D [Methylobacterium radiotolerans JCM
2831]
gi|218534418|sp|B1LUN4.1|NUOD_METRJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|170654997|gb|ACB24052.1| NADH dehydrogenase I, D subunit [Methylobacterium radiotolerans JCM
2831]
Length = 396
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 151/289 (52%), Positives = 202/289 (69%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y
Sbjct: 96 AQLIRVLFCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L+DDI F F + +++D++ NR++ QR D+GIVS ++A+ +
Sbjct: 156 FRPGGVHQDLPPKLIDDIDAFCDPFLQVVQDLDDLVMANRIFKQRNVDIGIVSVDEAMQW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSGI WDLRK QPY+ YE EFD+P+G +G+ VI M+EMRQS+RI++Q
Sbjct: 216 GFSGVMVRGSGIPWDLRKAQPYECYEEMEFDVPVGKNGDTYDRQVIRMEEMRQSVRIMKQ 275
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
+ K+ P G+ + + D K + P R EMK G+ VP G Y AVEA
Sbjct: 276 CVAKLREPAGQGPIASVDGKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDGT+KPYRCKI+APGFAHL A++ + +G LAD+ ++
Sbjct: 336 PKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVL 384
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIEYKTY QA PYFDRLDYVS M E + LA+EKL IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEYKTYLQATPYFDRLDYVSPMNQEHAFCLAIEKLAGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+F
Sbjct: 92 VPRRAQLIRVLFC 104
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNIRNFAINFGPQHPAAHGVLRLVLEL 30
>gi|86749693|ref|YP_486189.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris HaA2]
gi|123004159|sp|Q2IWY2.1|NUOD_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|86572721|gb|ABD07278.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris HaA2]
Length = 401
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/289 (53%), Positives = 201/289 (69%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY
Sbjct: 101 AQLIRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMMFYERASGSRMHAAY 160
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L+DDI ++ F +D++E +LT+NR++ QR D+G+V+ E A +
Sbjct: 161 FRIGGVHQDLPPKLIDDIDNWCDNFIQTVDDLETLLTDNRIFKQRNVDIGVVTLEQAWEW 220
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLRK QPY+ Y +FD+PIG +G+ I ++EMRQS+RI++Q
Sbjct: 221 GFSGVMVRGSGAAWDLRKSQPYECYAEMDFDVPIGKNGDCYDRYCIRVEEMRQSVRIMKQ 280
Query: 220 AINKM--PGGEVR--TDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
I KM P G+ R DD KI P R EMK G+ VP G Y AVEA
Sbjct: 281 CIAKMREPAGQGRVAVDDNKIFPPRRGEMKRSMESLIHHFKLYTEGFRVPAGEVYVAVEA 340
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDGT+KPY+CK++APGFAHL A++ I +G LAD+ AI+
Sbjct: 341 PKGEFGVYLVSDGTNKPYKCKVRAPGFAHLQAMDFICRGHLLADVSAIL 389
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL IE
Sbjct: 37 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIE 96
Query: 363 VPLRAKYIRVMFT 375
P RA+ IRV++
Sbjct: 97 APRRAQLIRVLYC 109
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 11 LRNFTINFGPQHPAAHGVLRLVLEL 35
>gi|114771819|ref|ZP_01449212.1| NADH dehydrogenase subunit D [Rhodobacterales bacterium HTCC2255]
gi|114547635|gb|EAU50526.1| NADH dehydrogenase subunit D [alpha proteobacterium HTCC2255]
Length = 403
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 206/286 (72%), Gaps = 27/286 (9%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+HI+ V T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 109 IRILYCEIGRILSHILNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAYFRP 168
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + F L +++ +LTENR++ QR D+ IVS ++AL++GFS
Sbjct: 169 GGVHQDLPQDLLDDIMAWTMEFPQVLADIDGLLTENRIFKQRNVDIAIVSEQEALDWGFS 228
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ FEFDIP+G +G+ + M+EMR+SL+I++QAI+
Sbjct: 229 GVMVRGSGMAWDLRRAQPYECYDEFEFDIPVGKNGDCYDRYLCRMQEMRESLKIIQQAIH 288
Query: 223 KMPGGEVRTDDM----KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ E T D+ K++ P+RS+MK G+ VP G Y AVEAPKG
Sbjct: 289 KL---ESTTGDVLARGKLTPPNRSDMKTSMESLIHHFKLYTEGFKVPEGEVYVAVEAPKG 345
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDG++KPY+ KI+APG+ HLAA++ + KG LAD+ AII
Sbjct: 346 EFGVFLVSDGSNKPYKTKIRAPGYLHLAAMDHLCKGHQLADVAAII 391
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL IE
Sbjct: 42 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLSGIE 101
Query: 363 VPLRAKYIRVMFT 375
VP RA IR+++
Sbjct: 102 VPRRASLIRILYC 114
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 13 EQRIRNFNINFGPQHPAAHGVLRLVLEL 40
>gi|431805607|ref|YP_007232508.1| NADH-ubiquinone oxidoreductase subunit D [Liberibacter crescens
BT-1]
gi|430799582|gb|AGA64253.1| NADH-ubiquinone oxidoreductase chain D [Liberibacter crescens BT-1]
Length = 396
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 203/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F LD+++D+LTENR++ QR D+GIV +DA +GFS
Sbjct: 159 GGVHQDLPHQLVEDIGIWCDPFLKVLDDIDDLLTENRIFKQRNVDIGIVKLDDAWGWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ YE+F+FDIP+G +G+ ++ M EMR+S++I+ Q +N
Sbjct: 219 GVMVRGSGAVWDLRKSQPYECYEDFDFDIPVGKNGDCYDRYLVRMIEMRESIKIIRQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D K+ P R +MK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDAKVGSVSSLDSKVVPPKREDMKTSMEALIHHFKLYTEGYHVPAGEIYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL++DG +KPYRCKI++PG+AHL A++ + KG LAD+ AI+
Sbjct: 339 EFGVYLIADGGNKPYRCKIRSPGYAHLQAMDFLCKGHQLADVAAIL 384
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KT+ QA+PYFDRLDYV+ M E Y+LAVE LL IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEGLLKIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R K IRV+++
Sbjct: 92 IPIRGKLIRVLYS 104
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ +RN INFGPQHPAAHGVL L E+
Sbjct: 3 KENLRNFTINFGPQHPAAHGVLRLVLEL 30
>gi|408785982|ref|ZP_11197722.1| NADH dehydrogenase subunit D [Rhizobium lupini HPC(L)]
gi|424910132|ref|ZP_18333509.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|392846163|gb|EJA98685.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|408488171|gb|EKJ96485.1| NADH dehydrogenase subunit D [Rhizobium lupini HPC(L)]
Length = 396
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+HIM V T A+DVGAMTP W FEEREK+M FYERA GARMH+AY RP
Sbjct: 99 IRVLYSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F LD +E +LT+NR++ QR D+G+VS EDA +GF+
Sbjct: 159 GGVHQDLPPELVDDIGKWCDPFITVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFT 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIP+G +G+ +I M+EMR+S++I++Q +
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVE 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLSGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVY+V+DG++KPYRCKI+APG+AHL A++ + KG LAD+ A++
Sbjct: 339 EFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVL 384
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEKLL +E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPMRGQLIRVLYS 104
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGP+HP+AHGVL L E+
Sbjct: 3 EHNVRNFTINFGPEHPSAHGVLRLVLEL 30
>gi|339504016|ref|YP_004691436.1| NADH-quinone oxidoreductase subunit NuoD [Roseobacter litoralis Och
149]
gi|338758009|gb|AEI94473.1| NADH-quinone oxidoreductase subunit NuoD [Roseobacter litoralis Och
149]
Length = 406
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 199/285 (69%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI RILNHI+ + T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 110 IRVLFCEIGRILNHILNITTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F + +++ +LTENR++ QR D+G+V+ ED L YGFS
Sbjct: 170 GGVHQDLPPELVDDIETWAHEFPRVIADIDGLLTENRIFKQRNADIGVVTEEDILEYGFS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M+EMRQSL I+ QA+
Sbjct: 230 GVMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMRQSLLIIHQAVE 289
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ E + D + KI+ PSRS+MK G+ VP G Y VEAPKGE
Sbjct: 290 KLRAPEGQGDVLARGKITPPSRSDMKTSMESLIHHFKLYTEGFHVPAGEVYACVEAPKGE 349
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR KI+APGF HL A++ + +G LAD+ AII
Sbjct: 350 FGVYLVADGTNKPYRAKIRAPGFLHLQAMDHMSRGHQLADVAAII 394
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 43 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 102
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+F
Sbjct: 103 VPRRASLIRVLFC 115
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ + E++IRN INFGPQHPAAHGVL L E+
Sbjct: 8 DDALTGEQKIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|153009748|ref|YP_001370963.1| NADH dehydrogenase subunit D [Ochrobactrum anthropi ATCC 49188]
gi|404320275|ref|ZP_10968208.1| NADH dehydrogenase subunit D [Ochrobactrum anthropi CTS-325]
gi|218534436|sp|A6X1N0.1|NUOD_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|151561636|gb|ABS15134.1| NADH dehydrogenase I, D subunit [Ochrobactrum anthropi ATCC 49188]
Length = 396
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F L+ ++D++T NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPDQLVEDIGKWIDPFFNTLNNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIPIG +G+ +I M+EMRQS RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYNEMEFDIPIGKNGDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKERVGPVSNADNKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDG++KPYRCK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVFLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAIL 384
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QALPY DRLDYV+ M E Y+LAVE+LL I+
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMEAKTYLQALPYLDRLDYVAPMNQEHAYALAVERLLGID 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E Q+RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETQVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040532|gb|ACT57328.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus
str. psy62]
Length = 396
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DIP L++DI + +F + L+++ D+LT NR++ QR ++G V EDA +GFS
Sbjct: 159 GGVHQDIPPELVEDIGCWCDSFPSALNDISDLLTGNRIFKQRNVNIGTVKLEDAWGWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG HG+ ++ M EMR+S++I+ Q +N
Sbjct: 219 GVMIRGSGAAWDLRKSQPYECYSELDFDIPIGKHGDCYDRYLVRMMEMRESVKIIRQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V D KI P R++MK GY VP G Y AVEAPKG
Sbjct: 279 RLLGKNKVGPVSASDPKIVPPKRADMKRSMESLIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDG +KPYRCKI+APG+AHL A+E + KG LAD+ AI+
Sbjct: 339 EFGVYLISDGGNKPYRCKIRAPGYAHLQAMEFLCKGHQLADVSAIL 384
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KT+ QA+PYFDRLDYV+ M E Y+LAVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+K+ R+ INFGPQHPAAHGVL L E+
Sbjct: 3 KKKSRSFTINFGPQHPAAHGVLRLILEL 30
>gi|86357240|ref|YP_469132.1| NADH dehydrogenase subunit D [Rhizobium etli CFN 42]
gi|123512311|sp|Q2K9T1.1|NUOD1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|86281342|gb|ABC90405.1| NADH-ubiquinone oxidoreductase chain D protein [Rhizobium etli CFN
42]
Length = 396
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++D+LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEKLVQDIGDWCDPFLKALDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMRQS+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G YTAVEAPKG
Sbjct: 279 RLLSDARTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYTAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y+LAVEKLL I+
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIQ 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|424894566|ref|ZP_18318140.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393178793|gb|EJC78832.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 396
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAYVRP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEQLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMRQS+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y++AVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYAMAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|420239078|ref|ZP_14743429.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF080]
gi|398082876|gb|EJL73615.1| NADH dehydrogenase I, D subunit [Rhizobium sp. CF080]
Length = 396
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F A+LD+++D+LT NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPPELVEDIGTWCDEFPAKLDDIDDLLTGNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S++I++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDMEFDIPIGKNGDCYDRYLIRMIEMRESVKIMKQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDAKTGPFSSADGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LV+DG++KPYRCKI+APG+AHL A++ I +G LAD+ A++
Sbjct: 339 EFGVFLVADGSNKPYRCKIRAPGYAHLQAMDFICRGHQLADVSAVL 384
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEK+L+I+
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKILDIQ 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|118590035|ref|ZP_01547439.1| NADH dehydrogenase subunit D [Stappia aggregata IAM 12614]
gi|118437532|gb|EAV44169.1| NADH dehydrogenase subunit D [Stappia aggregata IAM 12614]
Length = 394
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/284 (53%), Positives = 199/284 (70%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FE RE++M FYERA GARMHAAYVRP
Sbjct: 99 IRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEPREELMVFYERACGARMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ LLDDI+ F F LD++E +LT+NR++ QR D+G+V +DA +GFS
Sbjct: 159 GGVHQDLSRELLDDIWDFCDPFLQTLDDIEGLLTDNRIFKQRNVDIGVVDLDDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI++Q +
Sbjct: 219 GVMVRGSGAPWDLRKSQPYECYSELDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCLE 278
Query: 223 KMP--GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G V + D KI P R EMK GY VP G Y AVEAPKGEF
Sbjct: 279 KLTVETGPVSSIDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPEGEVYAAVEAPKGEF 338
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLV+DGT+KPYRCKIKAPG++HL A++ + +G LAD+ A++
Sbjct: 339 GVYLVADGTNKPYRCKIKAPGYSHLQAMDFLCRGHMLADVSAVL 382
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LA+E++L +E
Sbjct: 32 GEVVTRVDPHIGLLHRGTEKLIEQKTYLQAVPYFDRLDYVAPMNQEHAFALAIERMLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
E Q+RN INFGPQHPAAHGVL L E +TR+ HI
Sbjct: 3 EAQVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHI 42
>gi|254469443|ref|ZP_05082848.1| NADH dehydrogenase (quinone), D subunit [Pseudovibrio sp. JE062]
gi|211961278|gb|EEA96473.1| NADH dehydrogenase (quinone), D subunit [Pseudovibrio sp. JE062]
Length = 394
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 152/284 (53%), Positives = 198/284 (69%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FE RE++M FYER GARMHAAYVRP
Sbjct: 99 IRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEPREELMGFYERGCGARMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDD++++ F LD++E +LT+NR++ QR D+G+V ++A GFS
Sbjct: 159 GGVHQDLPQDLLDDMWNWCDPFLKTLDDIEGLLTDNRIFKQRNVDIGVVDLDEAWAMGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG KWDLRK QPY+ Y+ EFDI IG +G+ +I M EMRQS+RI++Q +
Sbjct: 219 GVMVRGSGAKWDLRKSQPYECYDEMEFDIAIGKNGDCYDRYLIRMFEMRQSVRIMKQCLE 278
Query: 223 KM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
+ G V + D K+ P R EMK GY VP G Y AVEAPKGEF
Sbjct: 279 MLGKETGPVSSTDGKVVPPKRGEMKRSMEALIHHFKLYTEGYKVPEGEIYAAVEAPKGEF 338
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDGT+KPYRCKIKAPGFAHL AL+ + +G LAD+ A+I
Sbjct: 339 GVYLVSDGTNKPYRCKIKAPGFAHLQALDYLCRGHMLADVAAVI 382
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYV+ M E Y+LAVE+LL IE
Sbjct: 32 GEVVTRVDPHIGLLHRGTEKLIEHKTYLQAVPYFDRLDYVAPMNQEHAYALAVERLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
E Q+RN INFGPQHPAAHGVL L E +TR+ HI
Sbjct: 3 EAQVRNFNINFGPQHPAAHGVLRLVLELDGEVVTRVDPHI 42
>gi|427428437|ref|ZP_18918478.1| NADH-ubiquinone oxidoreductase chain D [Caenispirillum salinarum
AK4]
gi|425882170|gb|EKV30852.1| NADH-ubiquinone oxidoreductase chain D [Caenispirillum salinarum
AK4]
Length = 398
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 148/285 (51%), Positives = 196/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + L+AE+TRI NHI+ + ++A+DVGAMTP W FEERE + EF ERASGARMHA Y
Sbjct: 102 AKWIRTLYAELTRIANHILNITSYAMDVGAMTPMLWGFEERETLFEFTERASGARMHANY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GL DI ++ + + ++E M+T NR++ QRT D+G+V+ E AL++
Sbjct: 162 FRPGGVAWDLPEGLEADIRTWVPHYRQYIRDLETMITGNRIFKQRTVDIGVVTPEQALDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+G LR G WDLRK QPYD Y+ EFDIP+G G+ ++ ++EMRQSL I+EQ
Sbjct: 222 GFTGPNLRACGYAWDLRKSQPYDAYDQVEFDIPVGKAGDCYDRYLVRVEEMRQSLDIIEQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++KM G VR ++ K++ P R EMK G+ VP G TYT EAPKGE
Sbjct: 282 CLDKMKPGPVRVENNKVTPPKRGEMKRSMEALIHHFKLFTEGFHVPAGETYTVTEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT++PYRC I++PGF HL A++ + KG LADI AII
Sbjct: 342 FGVYLVADGTNRPYRCYIRSPGFVHLQAMDMMAKGHMLADIPAII 386
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKLIEYKTY QA PYFDRLDY S + E + LAVEKLL IE
Sbjct: 38 GEVVERADPHVGLLHRGTEKLIEYKTYLQAGPYFDRLDYCSPLNMEHSWVLAVEKLLGIE 97
Query: 363 VPLRAKYIRVMF 374
VP RAK+IR ++
Sbjct: 98 VPERAKWIRTLY 109
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 6/34 (17%)
Query: 28 EKQIRNMV------INFGPQHPAAHGVLLLFAEI 55
E +I+N+ +NFGPQHPAAHGVL L E+
Sbjct: 3 EAEIKNLTLNTSTSVNFGPQHPAAHGVLRLVLEL 36
>gi|384918715|ref|ZP_10018784.1| NADH dehydrogenase subunit D [Citreicella sp. 357]
gi|384467428|gb|EIE51904.1| NADH dehydrogenase subunit D [Citreicella sp. 357]
Length = 410
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 147/288 (51%), Positives = 204/288 (70%), Gaps = 23/288 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY
Sbjct: 111 AQLIRVLYCEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAY 170
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P+ L+DDI + S+F LD+++ +LTENR++ QR D+GIV+ +D +Y
Sbjct: 171 FRPGGVHQDLPLALIDDIEAWCSSFPGMLDDIDGLLTENRIFKQRNADIGIVTEQDIQDY 230
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G+SGV++RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M EMR+S++I++Q
Sbjct: 231 GYSGVLVRGSGLAWDLRRAQPYECYDEFDFKIPVGKNGDCYDRYLCRMAEMRESVKIMQQ 290
Query: 220 AINKMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAP 261
A+ K+ E + D + KI+ P RSEMK G+ VP G Y VEAP
Sbjct: 291 ALEKLRLPENQGDVLARGKITPPQRSEMKTSMEALIHHFKLYTEGFHVPAGEVYACVEAP 350
Query: 262 KGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
KGEFGVYLV+DGT+KPYR K++APGF HL +++ + KG LAD+ AI+
Sbjct: 351 KGEFGVYLVADGTNKPYRAKLRAPGFLHLQSMDYLCKGHQLADVAAIL 398
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV M E + LA+E+L
Sbjct: 47 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVGTMNQEHAWCLAIERLTGTI 106
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 107 VPRRAQLIRVLYC 119
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+QIRN INFGPQHPAAHGVL L E+
Sbjct: 18 EQQIRNFNINFGPQHPAAHGVLRLVLEL 45
>gi|58042477|gb|AAW63678.1| NADH dehydrogenase subunit 7 [Calycanthus floridus]
Length = 364
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/285 (50%), Positives = 194/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A THA+DVGA TP W EEREK++EF+ER SGARMHA++
Sbjct: 78 AQYIRVLFREITRISNHSLASTTHAMDVGASTPSLWASEEREKLLEFHERVSGARMHASF 137
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+G DI F++R+DE E+M T NR+W QR D+G V+A+ A ++
Sbjct: 138 IRPGGVAQDLPLGSCRDIDSSTQQFASRIDESEEMSTGNRIWKQRLVDIGTVTAQQAKDW 197
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WD R+ PYD ++ + D+P+GT G+ I ++EMRQS+RI+ Q
Sbjct: 198 GFSGVMLRGRGVCWDSRRAAPYDVHDQSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 257
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 258 CPNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGE 317
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+APG AH L+ + K AD+V II
Sbjct: 318 FGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTII 362
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIG LHRGTEKLIEYKTY QALPY DR DYVS M E +S AVE+LLN E
Sbjct: 14 GEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEHAHSSAVERLLNCE 73
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 74 VPLRAQYIRVLF 85
>gi|260434177|ref|ZP_05788148.1| NADH dehydrogenase (quinone), d subunit [Silicibacter
lacuscaerulensis ITI-1157]
gi|260418005|gb|EEX11264.1| NADH dehydrogenase (quinone), d subunit [Silicibacter
lacuscaerulensis ITI-1157]
Length = 367
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/285 (52%), Positives = 201/285 (70%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 73 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 132
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + +F A LD+++ +LTENR++ QR D+G+V+ ED +GFS
Sbjct: 133 GGVHQDLPPELLDDIEAWSHSFPAVLDDIDGLLTENRIFKQRNCDIGVVTEEDIQQFGFS 192
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ FEF IP+G +G+ ++ M+EMRQS+ I+ QAI
Sbjct: 193 GVMVRGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLVRMEEMRQSVSIIRQAIA 252
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG + KI+ P RS+MK G+ VP G Y AVEAPKGE
Sbjct: 253 KLRDCPGDVLARG--KITPPKRSDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGE 310
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR K++APG+ HL A++ + KG LAD+ AII
Sbjct: 311 FGVYLVADGTNKPYRAKLRAPGYLHLQAMDHVAKGHQLADVAAII 355
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 6 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 65
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 66 VPRRASLIRVLYS 78
>gi|390449281|ref|ZP_10234890.1| NADH dehydrogenase subunit D [Nitratireductor aquibiodomus RA22]
gi|389664386|gb|EIM75881.1| NADH dehydrogenase subunit D [Nitratireductor aquibiodomus RA22]
Length = 396
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DIP L++DI ++I F +D+++ +LT NR++ QR D+G+V+ EDA +GFS
Sbjct: 159 GGVHQDIPDELVEDIGNWIEPFHKTVDDLDSLLTGNRIFKQRNVDIGVVTLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIP+G +G+ +I M+EMRQS +I+ + ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYPEMDFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRRCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V D KI P R EMK GY VP G Y VEAPKG
Sbjct: 279 RLLGTERVGPVSNTDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPEGEVYACVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCK++APGFAHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHLLADVAAVL 384
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYV+ M E ++LAVE+L+ I+
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYLQAVPYFDRLDYVAPMNQEHAFALAVERLIGID 91
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+F+
Sbjct: 92 VPIRGQLIRVLFS 104
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHSVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|296444797|ref|ZP_06886760.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
gi|296257745|gb|EFH04809.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
Length = 396
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 195/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+AEI R+L+H++ V + A+DVGA+TP W +EEREK+M FYERASGARMHA Y RP
Sbjct: 99 IRVLYAEIGRLLSHLLNVTSQAMDVGALTPPLWGYEEREKLMVFYERASGARMHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGVA D+P L++DI F F D++E++ NR++ QR D+G++S EDA YGFS
Sbjct: 159 GGVARDLPDQLVEDIGAFCDPFLKVCDDLEELFIGNRIFKQRNADIGVISLEDAWKYGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPYD YE EFDIPIG +G+ VI M+EMRQS I++Q +
Sbjct: 219 GVMVRGSGAPWDLRKSQPYDCYEEMEFDIPIGKNGDCYDRAVIRMEEMRQSTSIMKQCVE 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V + KI +P R+EMK G+ VP G Y AVEAPKG
Sbjct: 279 KLLKPENRGPVAAVNNKICSPPRAEMKRSMEALIHHFKLYTEGFKVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG KPYRCKI+APGFAHL A++ + K LAD+ AI+
Sbjct: 339 EFGVYLVSDGGDKPYRCKIRAPGFAHLQAMDFLCKNHLLADVSAIL 384
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+G LHRGTEKL+E +TY Q +PYFDRLDY S M E + L +E+LL +E
Sbjct: 32 GEVVERCDPHVGFLHRGTEKLMEARTYLQNVPYFDRLDYCSPMNQEHAFCLGIERLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 92 VPRRGQLIRVLYA 104
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ +RN +NFGPQHPAAHGVL L E+
Sbjct: 3 DQSLRNFNLNFGPQHPAAHGVLRLILEL 30
>gi|357384366|ref|YP_004899090.1| NADH-ubiquinone oxidoreductase subunit D [Pelagibacterium
halotolerans B2]
gi|351593003|gb|AEQ51340.1| NADH-ubiquinone oxidoreductase chain D [Pelagibacterium
halotolerans B2]
Length = 396
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T ALDVGA+TP W FE+RE++M FYERASG+RMHAA++RP
Sbjct: 99 IRVLYSEIGRILSHMLNVTTQALDVGALTPPLWGFEQREQLMVFYERASGSRMHAAFIRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI F TF LD+++ ++T NR++ QR D+ VS EDA +GFS
Sbjct: 159 GGVHQDLPQDLIDDIAKFTETFPKALDDLDQLITGNRIFKQRNVDIATVSLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y+ EFDIP+G +G+ +I M+EMRQS I+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYDQLEFDIPVGKNGDCYDRYLIRMEEMRQSNSIMRQCVD 278
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ P G+ V T D K+ P R EMK G+ VP G Y AVEAPKG
Sbjct: 279 LLNTPEGQGPVSTMDGKVVPPKRGEMKRSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDFLCRGHLLADVSAIL 384
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPH+GLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEKLL IE
Sbjct: 32 GEVVERVDPHVGLLHRGTEKLIEAKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPFRGQLIRVLYS 104
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +R INFGPQHPAAHGVL L E+
Sbjct: 2 TEHDVRTFNINFGPQHPAAHGVLRLVLEL 30
>gi|406708284|ref|YP_006758636.1| NADH dehydrogenase subunit D [alpha proteobacterium HIMB59]
gi|406654060|gb|AFS49459.1| NADH dehydrogenase subunit D [alpha proteobacterium HIMB59]
Length = 391
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/285 (51%), Positives = 197/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH++ + A+D+GA TP W FEEREKM+EF+E SGAR HAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLLNIPAFAMDIGAATPMLWAFEEREKMLEFHEAVSGARFHAAY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+ + + F +D +E++LTENR++ QR+ D+GI+S EDA+
Sbjct: 155 FRPGGVHQDLPDGLLEKMKVYFENFPKFIDTLEELLTENRIFKQRSVDIGILSKEDAVRL 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
SG +LR SG+ WDLRK QPYD Y+ +F IP+G G+ ++ M+EMR+S++I+ Q
Sbjct: 215 SCSGPVLRASGVAWDLRKSQPYDVYDKVKFSIPVGKTGDTYDRYLVRMEEMRESVKIILQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
IN++P G V ++ KI+ P RSEMK GY VP G TY AVEAPKGE
Sbjct: 275 CINQIPTGAVMVENNKITPPKRSEMKNSMEAIIHHFKLFTEGYRVPEGITYRAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV LVSDG+SKPYRCK++APGF HL AL + +G LAD+ +I+
Sbjct: 335 FGVVLVSDGSSKPYRCKLRAPGFPHLQALHFLSQGHQLADVPSIL 379
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIE KTYTQA+PYFDRLDYVS MC E +++AVE LLNI+
Sbjct: 31 GEVVNKAEPHIGLLHRGTEKLIEQKTYTQAIPYFDRLDYVSPMCQEHAFAIAVEDLLNIQ 90
Query: 363 VPLRAKYIRVMFT 375
P RA+YIRVMF
Sbjct: 91 APERAQYIRVMFA 103
Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ + + + +NFGPQHPAAHGVL L ++
Sbjct: 1 MSENFKPVTLNFGPQHPAAHGVLRLLVQL 29
>gi|114569908|ref|YP_756588.1| NADH dehydrogenase subunit D [Maricaulis maris MCS10]
gi|122316122|sp|Q0APY7.1|NUOD_MARMM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114340370|gb|ABI65650.1| NADH dehydrogenase subunit D [Maricaulis maris MCS10]
Length = 402
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
V +L+ EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHA Y RP
Sbjct: 105 VRVLYCEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAHYFRP 164
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P+ L++DI + F A+LD+++ +LTENR++ QR D+G+V+ ED L +GFS
Sbjct: 165 GGVHQDLPMKLVEDIRAWCDQFPAKLDDIDSLLTENRIFKQRNVDIGVVTKEDVLAWGFS 224
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY Y+ +FDIP+G +G+ + M+EMR+S++I+ Q +
Sbjct: 225 GVMVRGSGLAWDLRRSQPYSVYDELKFDIPVGKNGDCYDRYLCRMEEMRESVKIMIQCCD 284
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ GEV D K S P R+EMK G V G TY AVEAPKG
Sbjct: 285 WLMKDENAGEVLATDSKFSPPRRAEMKRSMEALIQHFKLYTEGVHVEEGETYVAVEAPKG 344
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYR KI+APGFAHLAA++ + KG LAD+ AII
Sbjct: 345 EFGVYLVSDGSNKPYRLKIRAPGFAHLAAMDYMSKGHMLADVSAII 390
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E+KTY Q + YFDRLDYV+ M E + +A EKL I
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLLEHKTYLQGIGYFDRLDYVAPMNQEHAFCMAAEKLAGIT 97
Query: 363 VPLRAKYIRVMFT 375
VP R +Y+RV++
Sbjct: 98 VPKRGEYVRVLYC 110
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D++ + RN INFGPQHPAAHGVL L E+
Sbjct: 3 DDMTQATEAPRNFTINFGPQHPAAHGVLRLVLEL 36
>gi|421850282|ref|ZP_16283245.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus NBRC
101655]
gi|371458874|dbj|GAB28448.1| NADH-quinone oxidoreductase chain D [Acetobacter pasteurianus NBRC
101655]
Length = 426
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/280 (51%), Positives = 195/280 (69%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++FAEITR+LNHI+ + LD GA+TP W +EEREK++EFYE ASGAR HA Y RPGG
Sbjct: 135 VMFAEITRVLNHILNLTAMGLDCGAVTPALWGYEEREKLLEFYEAASGARFHANYFRPGG 194
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA D+P GL D I + F +DE+E +LTENR+W QRT +G+ + E AL +GFSG
Sbjct: 195 VARDVPAGLEDKIGAWAKEFPKWIDELEGLLTENRIWKQRTVGIGVFTTEQALAWGFSGP 254
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
LR SG+ WDLR+ QPYD Y EF++P+ G+ ++ + EMR+S++I+EQ ++++
Sbjct: 255 CLRASGVPWDLRRNQPYDNYHKVEFNVPVARQGDCYDRYLVRVAEMRESVKIIEQCLSQI 314
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
G+V+ D K S P R+EMK GY VP GATYTAVE+PKGEFGVYL
Sbjct: 315 RPGDVKVQDPKFSPPPRAEMKRSMEALIHHFKLFSEGYHVPAGATYTAVESPKGEFGVYL 374
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+DG+++PYRCKI+ GFAHL A++++ + LAD+VAII
Sbjct: 375 VADGSNRPYRCKIRPTGFAHLQAIDELSRRGMLADMVAII 414
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PHIGLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LA EKLL I+
Sbjct: 66 GEVVARAVPHIGLLHRGTEKLIEYKTYQKALPYFDRLDYVSPMCEEQAFALATEKLLGID 125
Query: 363 VPLRAKYIRVMFT 375
+P RAK++RVMF
Sbjct: 126 IPERAKWLRVMFA 138
>gi|407776919|ref|ZP_11124190.1| NADH dehydrogenase subunit D [Nitratireductor pacificus pht-3B]
gi|407301084|gb|EKF20205.1| NADH dehydrogenase subunit D [Nitratireductor pacificus pht-3B]
Length = 396
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLFSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DIP L++DI +I F + ++D+LT NR++ QR D+G+VS EDA +GFS
Sbjct: 159 GGVHQDIPDHLVEDIGKWIDPFLVTVKNLDDLLTGNRIFKQRNVDIGVVSLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIPIG +G+ +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYPQMEFDIPIGKNGDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V D K+ P R +MK GY VP G Y AVEAPKG
Sbjct: 279 RLLGAQRTGPVSNMDGKVVPPKRGQMKRSMEALIHHFKLYTEGYRVPEGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCK++APGFAHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHLLADVSAVL 384
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVE+LL+IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEAKTYLQAVPYFDRLDYVAPMNQEHAFALAVERLLDIE 91
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+F+
Sbjct: 92 VPIRGQLIRVLFS 104
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 EASVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|371907960|emb|CAP18133.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Heterococcus
protonematoides]
Length = 320
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/241 (60%), Positives = 181/241 (75%), Gaps = 18/241 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNH++AVG HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAY RP
Sbjct: 80 IRVLFAEITRILNHLLAVGCHAIDVGAITPFLWAFEEREKLMEFYERVSGARMHAAYFRP 139
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV++D+PIGLLDDIY FIS FS RLDE+ED+LT NR+W R D+G+VSA+DAL +GFS
Sbjct: 140 GGVSMDLPIGLLDDIYIFISQFSRRLDEIEDILTNNRIWKLRLVDIGVVSAKDALAHGFS 199
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSG +WDLR+ Q YD Y + +FDIP+GT+G+ + + EMR+SLRI+ Q IN
Sbjct: 200 GVILRGSGFQWDLRQAQSYDVYSSIQFDIPVGTNGDCYDRYLCRLSEMRESLRIIHQCIN 259
Query: 223 KMPGGEVRTDDMKISTPS--RSEM-----------KGYPVPPGATYTAVEAPKGEFGVYL 269
+P GEVR ++ + S +S M +G VP G Y A EAPKGEFGVYL
Sbjct: 260 NIPLGEVRDENFGVQKRSVIKSSMEALIHHFKFYSEGVVVPSGEIYLATEAPKGEFGVYL 319
Query: 270 V 270
V
Sbjct: 320 V 320
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE K + QALPYFDRLDYVS++C E Y+L VE L +
Sbjct: 13 GEVVLHADPHIGLLHRGTEKLIENKNFLQALPYFDRLDYVSIICQEHTYALVVEALTKTK 72
Query: 363 VPLRAKYIRVMFT 375
PLR+ YIRV+F
Sbjct: 73 PPLRSMYIRVLFA 85
>gi|417110603|ref|ZP_11963773.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
CNPAF512]
gi|327188490|gb|EGE55704.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
CNPAF512]
Length = 396
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAYVRP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEKLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMRQS+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y+LAVE+LL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYALAVERLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|150396114|ref|YP_001326581.1| NADH dehydrogenase subunit D [Sinorhizobium medicae WSM419]
gi|218534362|sp|A6U7W6.1|NUOD1_SINMW RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|150027629|gb|ABR59746.1| NADH dehydrogenase I, D subunit [Sinorhizobium medicae WSM419]
Length = 396
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 201/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F +D+++++LT NR++ QR D+G+VS EDA +GFS
Sbjct: 159 GGVHQDLPHQLVEDIGKWIDPFLKTVDDIDELLTGNRIFKQRNVDIGVVSLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDCFDRYLIRMIEMRESARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDAKVGPVSSLDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGDVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVL 384
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVE+L +
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDYVAPMNQEHAFALAVERLTGTQ 91
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 92 VPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|296116532|ref|ZP_06835142.1| NADH dehydrogenase subunit D [Gluconacetobacter hansenii ATCC
23769]
gi|295976744|gb|EFG83512.1| NADH dehydrogenase subunit D [Gluconacetobacter hansenii ATCC
23769]
Length = 416
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 144/285 (50%), Positives = 196/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNHI+ + + LD GA+TP W +EEREK++EFYE ASGAR HA Y
Sbjct: 120 AKWIRVMFAEITRILNHILNLTSFGLDCGALTPALWGYEEREKLLEFYEAASGARFHANY 179
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GL + I + + F +D++E +LT NR+W QRT +G+ ++E AL +
Sbjct: 180 FRPGGVARDLPAGLEERIAQWTTEFPRWIDDLESLLTNNRIWKQRTVGIGVFTSEQALAW 239
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG LR SG+ WDLR+ QPYD Y+ EF++P+ G+ ++ + EMR+S++IV Q
Sbjct: 240 GFSGPCLRASGVPWDLRRSQPYDNYDKVEFNVPVARQGDCYDRYLVRVAEMRESVKIVAQ 299
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ +M G ++ D KI+ P R EMK GY VPPGATYTAVE+PKGE
Sbjct: 300 CLAQMKPGPIKVQDRKIAPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTAVESPKGE 359
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+ GFAHL A++ + + LAD VAII
Sbjct: 360 FGVYLVADGSNRPYRCKIRPTGFAHLQAMDVMARRHMLADAVAII 404
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V PH+GLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LA EKLLN+E
Sbjct: 56 GEVVTRAIPHVGLLHRGTEKLIEYKTYPKALPYFDRLDYVSPMCEEQAFALATEKLLNLE 115
Query: 363 VPLRAKYIRVMFT 375
+P RAK+IRVMF
Sbjct: 116 IPDRAKWIRVMFA 128
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I + +NFGPQHP+AHGVL L E +TR + H+
Sbjct: 29 EIDSHALNFGPQHPSAHGVLRLVLEMEGEVVTRAIPHV 66
>gi|239831689|ref|ZP_04680018.1| NADH dehydrogenase I, D subunit [Ochrobactrum intermedium LMG 3301]
gi|239823956|gb|EEQ95524.1| NADH dehydrogenase I, D subunit [Ochrobactrum intermedium LMG 3301]
Length = 404
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 107 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 166
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F L+ ++D++T NR++ QR D+G+V EDA +GFS
Sbjct: 167 GGVHQDLPDQLVEDIGKWIDPFFKTLNNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFS 226
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIP+G +G+ +I M+EMRQS +I+ Q ++
Sbjct: 227 GVMVRGSGAAWDLRKSQPYECYNEMEFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQCVD 286
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 287 LLLGKERVGPVSNADNKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 346
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDG++KPYRCK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 347 EFGVFLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAIL 392
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QALPY DRLDYV+ M E Y+LAVE+LL I+
Sbjct: 40 GEVVERVDPHIGLLHRGTEKLMEAKTYLQALPYLDRLDYVAPMNQEHAYALAVERLLGID 99
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 100 VPKRGQLIRVLYS 112
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 24/35 (68%)
Query: 21 NDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
N L E Q+RN INFGPQHPAAHGVL L E+
Sbjct: 4 NRKLNMAETQVRNFNINFGPQHPAAHGVLRLVLEL 38
>gi|398353157|ref|YP_006398621.1| NADH-quinone oxidoreductase subunit D [Sinorhizobium fredii USDA
257]
gi|390128483|gb|AFL51864.1| NADH-quinone oxidoreductase subunit D [Sinorhizobium fredii USDA
257]
Length = 396
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GARMH+AY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHSAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F +D+++++LT NR++ QR D+G+VS EDA +GFS
Sbjct: 159 GGVHQDLPHELVEDIGKWIDPFLKTVDDIDELLTGNRIFKQRNVDIGVVSLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y EFDIPIG +G+ +I M EMRQS RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSEMEFDIPIGKNGDCYDRYLIRMIEMRQSARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDAKIGPVSSLDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVL 384
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E +++AVE+L E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDYVAPMNQEHAFAIAVERLTGTE 91
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 92 VPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|349685710|ref|ZP_08896852.1| NADH dehydrogenase subunit D [Gluconacetobacter oboediens 174Bp2]
Length = 418
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/285 (50%), Positives = 195/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNHI+ + + LD GA+TP W +EEREK++EFYE ASGAR HA Y
Sbjct: 122 AKWIRVMFAEITRILNHILNLTSFGLDCGALTPALWGYEEREKLIEFYEAASGARFHANY 181
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GL + I + TF +D++E +LT NR+W QRT +G+ + E AL +
Sbjct: 182 VRPGGVARDLPAGLEERIADWARTFPKWIDDLESLLTSNRIWKQRTVGIGVFTTEQALAW 241
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG LR SG+ WDLR+ QPYD Y+ EF++P+G G+ +I + EMR+S+RI+ Q
Sbjct: 242 GFSGPCLRASGVPWDLRRSQPYDNYDKVEFNVPVGRQGDCYDRYLIRVAEMRESVRIINQ 301
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ ++ G V+ D KI+ P R EMK GY VPPGATYT E PKGE
Sbjct: 302 CLEQIRPGPVKVRDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTVTETPKGE 361
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+ GF+HL A++++ + LAD VAII
Sbjct: 362 FGVYLVADGSNRPYRCKIRPTGFSHLQAIDEMSRRHMLADAVAII 406
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PH+GLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LAVEKLLNIE
Sbjct: 58 GEVVARAIPHVGLLHRGTEKLIEYKTYPKALPYFDRLDYVSPMCEEQAFALAVEKLLNIE 117
Query: 363 VPLRAKYIRVMFT 375
P RAK+IRVMF
Sbjct: 118 APERAKWIRVMFA 130
>gi|209548865|ref|YP_002280782.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|229891299|sp|B5ZYL5.1|NUOD_RHILW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209534621|gb|ACI54556.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 396
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAYVRP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEQLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMRQS+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y+LAVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|424914555|ref|ZP_18337919.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850731|gb|EJB03252.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 396
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAYVRP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEQLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMRQS+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y++AVEKLL I+
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYAMAVEKLLGID 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|424890847|ref|ZP_18314446.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393173065|gb|EJC73110.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 396
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAYVRP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEQLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QALPYFDRLDYV+ M E Y++AVEKLL +E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQALPYFDRLDYVAPMNQEHAYAMAVEKLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|444310747|ref|ZP_21146366.1| NADH dehydrogenase subunit D [Ochrobactrum intermedium M86]
gi|443485949|gb|ELT48732.1| NADH dehydrogenase subunit D [Ochrobactrum intermedium M86]
Length = 396
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F L+ ++D++T NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPDQLVEDIGKWIDPFFKTLNNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIP+G +G+ +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYNEMEFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKERVGPVSNADNKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDG++KPYRCK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVFLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAIL 384
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QALPY DRLDYV+ M E Y+LAVE+LL I+
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMEAKTYLQALPYLDRLDYVAPMNQEHAYALAVERLLGID 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E Q+RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETQVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|323138148|ref|ZP_08073221.1| NADH dehydrogenase I, D subunit [Methylocystis sp. ATCC 49242]
gi|322396610|gb|EFX99138.1| NADH dehydrogenase I, D subunit [Methylocystis sp. ATCC 49242]
Length = 401
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+AEI R+L+H++ V + A+DVGA+TP W +EEREK+M FYERA GARMHA Y RP
Sbjct: 104 IRVLYAEIGRLLSHLLNVTSQAMDVGALTPPLWGYEEREKLMVFYERACGARMHANYFRP 163
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGVA D+P L++DI F F +D+++++ NR++ QR D+G++S EDA +GFS
Sbjct: 164 GGVARDLPDQLVEDIGAFCDPFLKVVDDLDELFIGNRIFKQRNVDIGVISLEDAWKWGFS 223
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ YE EFDIP+G HG+ VI M+EMRQS I++Q +
Sbjct: 224 GVMVRGSGAAWDLRKAQPYECYEEMEFDIPVGKHGDCYDRAVIRMEEMRQSTYIMKQCVE 283
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V T + KI+ PSR EMK G+ VP G Y AVEAPKG
Sbjct: 284 KLMRADGRGPVLTPNHKITQPSRQEMKRSMEALIHHFKLFTEGFHVPAGEVYAAVEAPKG 343
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG KPYRCKI+APGF HL+A++ + KG LAD+ AI+
Sbjct: 344 EFGVYLVSDGGDKPYRCKIRAPGFVHLSAMDFLCKGHMLADVSAIL 389
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPH+G LHRGTEKL+E +TY Q +PYFDRLDY + M E + LA+E+LL++E
Sbjct: 37 GEVVERVDPHVGFLHRGTEKLMESRTYLQNVPYFDRLDYCAPMNQEHAFCLAIERLLDVE 96
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 97 VPRRGQLIRVLYA 109
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
RN INFGPQHPAAHGVL L E+
Sbjct: 12 RNFNINFGPQHPAAHGVLRLILEL 35
>gi|190891288|ref|YP_001977830.1| NADH dehydrogenase subunit D [Rhizobium etli CIAT 652]
gi|218534357|sp|B3PW00.1|NUOD1_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|190696567|gb|ACE90652.1| NADH-ubiquinone oxidoreductase protein, chain D [Rhizobium etli
CIAT 652]
Length = 396
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY+RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYIRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEKLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMRQS+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y+LAVE+LL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYALAVERLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|56697620|ref|YP_167989.1| NADH dehydrogenase subunit D [Ruegeria pomeroyi DSS-3]
gi|81676164|sp|Q5LPR7.1|NUOD_SILPO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56679357|gb|AAV96023.1| NADH dehydrogenase I, D subunit [Ruegeria pomeroyi DSS-3]
Length = 405
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 199/285 (69%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 111 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 170
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + TF LD+++ +LTENR++ QR D+G+VS E+ L YGFS
Sbjct: 171 GGVHQDLPDALLDDIEAWSHTFPNVLDDIDGLLTENRIFKQRNCDIGVVSEEEILQYGFS 230
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ FEF +P+G +G+ + M+EMRQS+ I+ QAI
Sbjct: 231 GVMVRGSGLAWDLRRAQPYECYDEFEFQVPVGKNGDCYDRYLCRMEEMRQSISIIRQAIA 290
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG + K++ P R +MK G+ VP G Y AVEAPKGE
Sbjct: 291 KLRDCPGDVLARG--KLTPPKRGDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGE 348
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR KI+APG+ HL A++ + +G LAD+ AII
Sbjct: 349 FGVYLVADGTNKPYRSKIRAPGYLHLQAMDHVARGHQLADVAAII 393
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 44 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 104 VPRRASLIRVLYS 116
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL + E+
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRMVLEL 42
>gi|259418627|ref|ZP_05742544.1| NADH dehydrogenase (quinone), d subunit [Silicibacter sp.
TrichCH4B]
gi|259344849|gb|EEW56703.1| NADH dehydrogenase (quinone), d subunit [Silicibacter sp.
TrichCH4B]
Length = 405
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 154/288 (53%), Positives = 200/288 (69%), Gaps = 25/288 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY
Sbjct: 108 AQLIRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHAAY 167
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P LLDDI + F +D+++ +LTENR++ QR D+G+V+ +D Y
Sbjct: 168 FRPGGVHQDLPDELLDDIDLWAMEFPKVIDDIDGLLTENRIFKQRNCDIGVVTEDDIQKY 227
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG+ WDLR+ QPY+ Y+ FEF IP+G +G+ ++ M+EMRQSL I+ Q
Sbjct: 228 GFSGVMVRGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQ 287
Query: 220 AINKMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAP 261
AI K+ E D M KIS P RS+MK G+ VP G Y AVEAP
Sbjct: 288 AIAKLR--EATGDVMARGKISPPKRSDMKTSMESLIHHFKLYTEGFHVPEGEVYAAVEAP 345
Query: 262 KGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
KGEFGVYLV+DGT+KPYR K++APGF HL A++ + KG LAD+ AII
Sbjct: 346 KGEFGVYLVADGTNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAII 393
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 44 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+++
Sbjct: 104 VPRRAQLIRVLYS 116
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ E++IRN INFGPQHPAAHGVL L E+
Sbjct: 9 DDAQTGEQKIRNFNINFGPQHPAAHGVLRLVLEL 42
>gi|339021753|ref|ZP_08645745.1| NADH-quinone oxidoreductase chain D [Acetobacter tropicalis NBRC
101654]
gi|338751249|dbj|GAA09049.1| NADH-quinone oxidoreductase chain D [Acetobacter tropicalis NBRC
101654]
Length = 427
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 143/280 (51%), Positives = 196/280 (70%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++FAEITRILNHI+ + LD GA+TP W +EEREK++EFYE ASGAR HA Y RPGG
Sbjct: 136 VMFAEITRILNHILNITAMGLDCGAVTPALWGYEEREKLLEFYEAASGARFHANYFRPGG 195
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA DIP L D I + F A +D++E +LTENR+W QRT +GI + E AL +GFSG
Sbjct: 196 VARDIPAELEDRIGAWAKEFPAWIDDLEGLLTENRIWKQRTVGIGIFTTEQALAWGFSGP 255
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
LR SG+ WDLR+ QPYD Y +F +P+ G+ ++ M+EMR+S++I+EQ + ++
Sbjct: 256 CLRASGVPWDLRRSQPYDNYHKVDFKVPVTRQGDCYDRYLVRMEEMRESVKIIEQCLAQI 315
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
G+V+ D K + P R++MK GY VPPGATYTAVE+PKGEFGVYL
Sbjct: 316 QPGDVKVQDPKFTPPRRADMKRSMEALIHHFKLFSEGYHVPPGATYTAVESPKGEFGVYL 375
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
V+DG+++PYRCKI+ GF+HL A++++ + + LAD+VA+I
Sbjct: 376 VADGSNRPYRCKIRPTGFSHLQAIDELSRRAMLADMVAVI 415
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PHIGLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LA EKLL I+
Sbjct: 67 GEVVARAVPHIGLLHRGTEKLIEYKTYHKALPYFDRLDYVSPMCEEQAFALATEKLLGID 126
Query: 363 VPLRAKYIRVMFT 375
+P RAK++RVMF
Sbjct: 127 IPERAKWLRVMFA 139
>gi|347760095|ref|YP_004867656.1| NADH-quinone oxidoreductase subunit D [Gluconacetobacter xylinus
NBRC 3288]
gi|347579065|dbj|BAK83286.1| NADH-quinone oxidoreductase chain D [Gluconacetobacter xylinus NBRC
3288]
Length = 418
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 145/285 (50%), Positives = 194/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNHI+ + + LD GA+TP W +EEREK++EFYE ASGAR HA Y
Sbjct: 122 AKWIRVMFAEITRILNHILNLTSFGLDCGALTPALWGYEEREKLIEFYEAASGARFHANY 181
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GL + I + TF +D++E +LT NR+W QRT +G+ + E AL +
Sbjct: 182 VRPGGVARDLPAGLEERIADWAHTFPKWIDDLESLLTNNRIWKQRTVGIGVFTTEQALAW 241
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG LR SG+ WDLR+ QPYD Y EF++P+G G+ +I + EMR+S++IV Q
Sbjct: 242 GFSGPCLRASGVPWDLRRSQPYDNYHKVEFNVPVGRQGDCYDRYLIRVAEMRESVKIVNQ 301
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ ++ G V+ D KI+ P R EMK GY VPPGATYT E PKGE
Sbjct: 302 CLEQIRPGPVKVQDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTVTETPKGE 361
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+ GF+HL A++++ + LAD VAII
Sbjct: 362 FGVYLVADGSNRPYRCKIRPTGFSHLQAIDEMSRRHMLADAVAII 406
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PH+GLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LAVEKLL IE
Sbjct: 58 GEVVARAIPHVGLLHRGTEKLIEYKTYPKALPYFDRLDYVSPMCEEQAFALAVEKLLGIE 117
Query: 363 VPLRAKYIRVMFT 375
P RAK+IRVMF
Sbjct: 118 APERAKWIRVMFA 130
>gi|209885055|ref|YP_002288912.1| NADH dehydrogenase subunit D [Oligotropha carboxidovorans OM5]
gi|337741315|ref|YP_004633043.1| NADH-quinone oxidoreductase subunit D [Oligotropha carboxidovorans
OM5]
gi|386030331|ref|YP_005951106.1| NADH-quinone oxidoreductase subunit D [Oligotropha carboxidovorans
OM4]
gi|229891292|sp|B6JGW3.1|NUOD_OLICO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|209873251|gb|ACI93047.1| d subunit of NADH dehydrogenase (quinone) [Oligotropha
carboxidovorans OM5]
gi|336095399|gb|AEI03225.1| NADH-quinone oxidoreductase subunit D [Oligotropha carboxidovorans
OM4]
gi|336098979|gb|AEI06802.1| NADH-quinone oxidoreductase subunit D [Oligotropha carboxidovorans
OM5]
Length = 405
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ + T ALDVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 108 IRVLYSEIGRILSHLLNITTQALDVGALTPPLWGFEEREKLMMFYERASGSRMHAAFFRI 167
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F +LD++E +LT+NR++ QR D+G+V+ + A +GFS
Sbjct: 168 GGVHQDLPPKLIGDIDIWCDAFPEKLDDLEILLTDNRIFKQRNVDIGVVTLDQAWEWGFS 227
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y+ EFDIPIG +G+ I ++EMRQS+RI++Q I
Sbjct: 228 GVMVRGSGAAWDLRRAQPYECYDEMEFDIPIGKNGDCYDRYCIRVEEMRQSVRIMKQCIA 287
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
KM P G+ V +D KI+ P R EMK G VPPG Y AVEAPKG
Sbjct: 288 KMRAPDGQGPVVIEDNKITPPRRGEMKRSMEALIHHFKLYTEGVHVPPGEVYAAVEAPKG 347
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPY+CKI+APGFAHL A++ I KG LAD+ AI+
Sbjct: 348 EFGVYLVADGTNKPYKCKIRAPGFAHLQAMDFICKGHLLADVSAIL 393
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL I
Sbjct: 41 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIT 100
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 101 VPRRGQLIRVLYS 113
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
RN INFGPQHPAAHGVL L E+
Sbjct: 16 RNFTINFGPQHPAAHGVLRLVLEL 39
>gi|114777364|ref|ZP_01452361.1| NADH dehydrogenase subunit D [Mariprofundus ferrooxydans PV-1]
gi|114552146|gb|EAU54648.1| NADH dehydrogenase subunit D [Mariprofundus ferrooxydans PV-1]
Length = 392
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 148/287 (51%), Positives = 196/287 (68%), Gaps = 22/287 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH M +G ALD+GAMT F + F ERE + ++YE SGARMHA+Y
Sbjct: 94 AQYIRVMFAELTRILNHCMWLGAVALDIGAMTVFLFCFREREDIFDYYEAVSGARMHASY 153
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+ I F F +DE E +LTENR+W QR D+ +V E AL +
Sbjct: 154 FRPGGVAKDLPEGLLERIKGFTERFPGFVDEYETLLTENRIWKQRNVDIAVVDEESALEW 213
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG M+RGSG+ WDLRK QPYD Y+ +FDIP+G G+ ++ ++EMRQS RI+EQ
Sbjct: 214 GFSGPMIRGSGVAWDLRKTQPYDVYDKMDFDIPVGVTGDCYDRYLVRVEEMRQSNRIIEQ 273
Query: 220 AINKMPG--GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+ + G V+ DD K+++P R+EMK GY VP G Y VE PK
Sbjct: 274 CVEWLSNNPGPVKVDDYKLTSPPRAEMKSDMESLIHHFKYFSEGYHVPEGEVYQVVEHPK 333
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDG++KPYR K++APGFAH+ AL+ + +G +AD+VAI+
Sbjct: 334 GEFGVYLVSDGSNKPYRMKVRAPGFAHIEALDYMCRGHMIADVVAIL 380
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E KTY Q LPYFDR DYVSMM NE Y+LAVEKLL IE
Sbjct: 30 GEVVERADPHIGLLHRGTEKLFEEKTYLQNLPYFDRFDYVSMMANEHAYTLAVEKLLGIE 89
Query: 363 VPLRAKYIRVMFT 375
P RA+YIRVMF
Sbjct: 90 APERAQYIRVMFA 102
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|330994057|ref|ZP_08317987.1| NADH-quinone oxidoreductase subunit D [Gluconacetobacter sp.
SXCC-1]
gi|329759003|gb|EGG75517.1| NADH-quinone oxidoreductase subunit D [Gluconacetobacter sp.
SXCC-1]
Length = 418
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 145/285 (50%), Positives = 195/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNHI+ + + LD GA+TP W +EEREK++EFYE ASGAR HA Y
Sbjct: 122 AKWIRVMFAEITRILNHILNLTSFGLDCGALTPALWGYEEREKLIEFYEAASGARFHANY 181
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GL D I + TF +D++E +LT NR+W QRT +G+ + E AL +
Sbjct: 182 VRPGGVAQDLPAGLEDRIADWARTFPQWIDDLEALLTGNRIWKQRTVGIGVFTTEQALAW 241
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG LR SG+ WDLR+ QPYD Y+ EF++P+G G+ +I + EMR+S++I+ Q
Sbjct: 242 GFSGPCLRASGVPWDLRRSQPYDNYDKVEFNVPVGRQGDCYDRYLIRVAEMRESVKIINQ 301
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ ++ G V+ D KI+ P R EMK GY VPPGATYT E PKGE
Sbjct: 302 CLEQIRPGPVKVQDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTVTETPKGE 361
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+ GF+HL A++++ + LAD VAII
Sbjct: 362 FGVYLVADGSNRPYRCKIRPTGFSHLQAIDEMSRRHMLADAVAII 406
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PH+GLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LAVEKLL IE
Sbjct: 58 GEVVARAIPHVGLLHRGTEKLIEYKTYPKALPYFDRLDYVSPMCEEQAFALAVEKLLGIE 117
Query: 363 VPLRAKYIRVMFT 375
P RAK+IRVMF
Sbjct: 118 APERAKWIRVMFA 130
>gi|346994692|ref|ZP_08862764.1| NADH dehydrogenase subunit D [Ruegeria sp. TW15]
Length = 407
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 199/285 (69%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 113 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 172
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + F A LD+++ +LTENR++ QR D+G+V+ +D YGFS
Sbjct: 173 GGVHQDLPPELLDDIEAWSHEFPAVLDDIDGLLTENRIFKQRNADIGVVTEDDIQKYGFS 232
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ FEF IP+G +G+ ++ M+EMRQSL I+ QAI
Sbjct: 233 GVMVRGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLVRMEEMRQSLLIIRQAIA 292
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG + KI+ P RS+MK G+ VP G Y AVEAPKGE
Sbjct: 293 KIRDCPGDVLARG--KITPPKRSDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGE 350
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR K++APGF HL A++ + G LAD+ AII
Sbjct: 351 FGVYLVADGTNKPYRAKLRAPGFLHLQAMDHVAGGHQLADVAAII 395
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 46 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 105
Query: 363 VPLRAKYIRVMFT 375
VP R IRV+++
Sbjct: 106 VPRRGSLIRVLYS 118
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 17 EQKIRNFNINFGPQHPAAHGVLRLVLEL 44
>gi|452750665|ref|ZP_21950412.1| NADH-ubiquinone oxidoreductase chain D [alpha proteobacterium
JLT2015]
gi|451961859|gb|EMD84268.1| NADH-ubiquinone oxidoreductase chain D [alpha proteobacterium
JLT2015]
Length = 420
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 148/285 (51%), Positives = 191/285 (67%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +FAEITRI NHI+ HA+DVGAMTP WLFEERE + EFYERASGAR HAAY
Sbjct: 124 AQYIRTMFAEITRITNHILNTTAHAMDVGAMTPMLWLFEEREYICEFYERASGARFHAAY 183
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P LL DI + F L + E ++ NR++ QR D+GI+S EDA+ +
Sbjct: 184 FRPGGVHQDLPPKLLADIAEWAERFPKVLADFEALVAGNRIFKQRNVDIGIISKEDAVAW 243
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG +RGSGI WD+RK QPYD Y+ EFDIP+GT G+ ++ ++EM++SL+I++Q
Sbjct: 244 GFSGPCIRGSGIAWDIRKSQPYDVYDRMEFDIPVGTSGDCYDRFMVRIQEMKESLKIIKQ 303
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ +MP G V D KIS P R EMK G+ VP G Y A E+PKGE
Sbjct: 304 CVAEMPEGPVMATDPKISPPRRGEMKRSMEALINHFKLYTEGFHVPEGEVYVATESPKGE 363
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG+YLVSDG++KPYRCKI+ F+HL A+E + KG LAD A++
Sbjct: 364 FGIYLVSDGSNKPYRCKIRPTAFSHLQAMEFLCKGHMLADAPAVL 408
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ IDPH+GLLHRGTEKLIEYKTY QALPY DRLDYVS MC E Y LAVEKLL++E
Sbjct: 60 GEIIERIDPHVGLLHRGTEKLIEYKTYLQALPYMDRLDYVSPMCQEHSYVLAVEKLLDLE 119
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIR MF
Sbjct: 120 VPLRAQYIRTMFA 132
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I+N +NFGPQHPAAHGVL L E I RI H+
Sbjct: 33 EIQNYSMNFGPQHPAAHGVLRLIMEMDGEIIERIDPHV 70
>gi|402486154|ref|ZP_10832986.1| NADH dehydrogenase subunit D [Rhizobium sp. CCGE 510]
gi|401814810|gb|EJT07140.1| NADH dehydrogenase subunit D [Rhizobium sp. CCGE 510]
Length = 396
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAYVRP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEQLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y++AVEKLL I+
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYAMAVEKLLGID 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|260426567|ref|ZP_05780546.1| NADH dehydrogenase (quinone), d subunit [Citreicella sp. SE45]
gi|260421059|gb|EEX14310.1| NADH dehydrogenase (quinone), d subunit [Citreicella sp. SE45]
Length = 410
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 146/288 (50%), Positives = 202/288 (70%), Gaps = 23/288 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY
Sbjct: 111 AQLIRVLYCEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAY 170
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L+DDI + F ARL +++D+LTENR++ QR D+G+++ +D +
Sbjct: 171 FRPGGVHQDLPPKLIDDIDAWCDQFPARLQDIDDLLTENRIFKQRNADIGVITEQDIQEH 230
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G+SGVM+RGSG+ WDLR+ QPY+ Y+ FEF IP+G +G+ + M EMR+S++I++Q
Sbjct: 231 GYSGVMVRGSGLAWDLRRAQPYECYDEFEFKIPVGKNGDCYDRYLCRMAEMRESVKIMKQ 290
Query: 220 AINKMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAP 261
A+ K+ E + D + KI+ P RSEMK G+ VP G Y AVEAP
Sbjct: 291 AVEKLRMPENQGDVLARGKITPPKRSEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAP 350
Query: 262 KGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
KGEFGVYLV+DG++KPYR K++APGF HL +++ + KG LAD+ AI+
Sbjct: 351 KGEFGVYLVADGSNKPYRAKLRAPGFLHLQSMDYVCKGHQLADVAAIL 398
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV M E + +A+E+L +E
Sbjct: 47 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVGTMNQEHAWCIAIERLTGVE 106
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 107 VPRRAQLIRVLYC 119
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 18 EQKIRNFNINFGPQHPAAHGVLRLVLEL 45
>gi|218529211|ref|YP_002420027.1| NADH dehydrogenase I subunit D [Methylobacterium extorquens CM4]
gi|218521514|gb|ACK82099.1| NADH dehydrogenase I, D subunit [Methylobacterium extorquens CM4]
Length = 396
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/289 (51%), Positives = 201/289 (69%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y
Sbjct: 96 AQLIRTLFCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L+DDI F F +D++++++ NR++ QR D+GIVS ++A+ +
Sbjct: 156 FRPGGVHQDLPPALIDDIEAFCDPFLKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSGI WDLRK QPY+ YE EFDIP+G +G+ VI M+EMR+S++I+ Q
Sbjct: 216 GFSGVMVRGSGIPWDLRKSQPYELYEEMEFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQ 275
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
+ K+ P G+ + + D K + P R EMK G+ VP G Y AVEA
Sbjct: 276 CVTKLREPAGQGPIASIDGKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDGT+KPYRCKI+APGFAHL A++ + +G LAD+ ++
Sbjct: 336 PKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVL 384
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA PYFDRLDYV+ M E + LA+E+L IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYFDRLDYVAPMNQEHAFCLAIERLAGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IR +F
Sbjct: 92 VPRRAQLIRTLFC 104
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNIRNFSINFGPQHPAAHGVLRLVLEL 30
>gi|414166630|ref|ZP_11422862.1| NADH-quinone oxidoreductase subunit D [Afipia clevelandensis ATCC
49720]
gi|410892474|gb|EKS40266.1| NADH-quinone oxidoreductase subunit D [Afipia clevelandensis ATCC
49720]
Length = 402
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 105 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRV 164
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F +D++E +LT+NR++ QR D+G+V+ E A +GFS
Sbjct: 165 GGVHQDLPPALINDIEAWCDPFLKVVDDLETLLTDNRIFKQRNVDIGVVTLEQAWEWGFS 224
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y+ +FDIPIG +G+ I M+EMRQS+RI++Q I
Sbjct: 225 GVMVRGSGAAWDLRKSQPYECYDEMDFDIPIGKNGDCYDRYCIRMEEMRQSVRIMKQCIE 284
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V DD KI+ P RSEMK G VP G Y AVEAPKG
Sbjct: 285 KLRAPEGQGPVVVDDNKIAPPRRSEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKG 344
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LV+DGT+KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 345 EFGVFLVADGTNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAIL 390
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL I+
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIQ 97
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 98 VPRRGQLIRVLYC 110
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 12 MRNFTINFGPQHPAAHGVLRLVLEL 36
>gi|374331780|ref|YP_005081964.1| NADH dehydrogenase subunit 7 [Pseudovibrio sp. FO-BEG1]
gi|359344568|gb|AEV37942.1| NADH dehydrogenase subunit 7 [Pseudovibrio sp. FO-BEG1]
Length = 372
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/284 (53%), Positives = 197/284 (69%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FE RE++M FYER GARMHAAYVRP
Sbjct: 77 IRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEPREELMGFYERGCGARMHAAYVRP 136
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDD++++ F LD++E +LT+NR++ QR D+G+V ++A GFS
Sbjct: 137 GGVHQDLPQDLLDDMWNWCDPFLKTLDDIEGLLTDNRIFKQRNVDIGVVDLDEAWAMGFS 196
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG KWDLRK QPY+ Y+ EFDI IG +G+ +I M EM QS+RI++Q +
Sbjct: 197 GVMVRGSGAKWDLRKSQPYECYDEMEFDIAIGKNGDCYDRYLIRMFEMHQSVRIMKQCLE 256
Query: 223 KM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
+ G V + D K+ P R EMK GY VP G Y AVEAPKGEF
Sbjct: 257 MLGKETGPVSSTDGKVVPPKRGEMKRSMEALIHHFKLYTEGYKVPEGEIYAAVEAPKGEF 316
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDGT+KPYRCKIKAPGFAHL AL+ + +G LAD+ A+I
Sbjct: 317 GVYLVSDGTNKPYRCKIKAPGFAHLQALDYLCRGHMLADVAAVI 360
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYV+ M E Y+LAVE+LL IE
Sbjct: 10 GEVVTRVDPHIGLLHRGTEKLIEHKTYLQAVPYFDRLDYVAPMNQEHAYALAVERLLGIE 69
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 70 VPKRGQLIRVLYS 82
>gi|254560050|ref|YP_003067145.1| NADH-quinone oxidoreductase subunit D [Methylobacterium extorquens
DM4]
gi|254267328|emb|CAX23160.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
[Methylobacterium extorquens DM4]
Length = 396
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/289 (51%), Positives = 201/289 (69%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y
Sbjct: 96 AQLIRTLFCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L+DDI F F +D++++++ NR++ QR D+GIVS ++A+ +
Sbjct: 156 FRPGGVHQDLPPALIDDIEAFCDPFLKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSGI WDLRK QPY+ YE EFDIP+G +G+ VI M+EMR+S++I+ Q
Sbjct: 216 GFSGVMVRGSGIPWDLRKSQPYELYEEMEFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQ 275
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
+ K+ P G+ + + D K + P R EMK G+ VP G Y AVEA
Sbjct: 276 CVAKLREPAGQGPIASIDRKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDGT+KPYRCKI+APGFAHL A++ + +G LAD+ ++
Sbjct: 336 PKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVL 384
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA PYFDRLDYV+ M E + LA+E+L IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYFDRLDYVAPMNQEHAFCLAIERLAGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IR +F
Sbjct: 92 VPRRAQLIRTLFC 104
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNIRNFSINFGPQHPAAHGVLRLVLEL 30
>gi|421587052|ref|ZP_16032507.1| NADH dehydrogenase subunit D [Rhizobium sp. Pop5]
gi|403708573|gb|EJZ23228.1| NADH dehydrogenase subunit D [Rhizobium sp. Pop5]
Length = 396
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++D+LT NR++ QR D+G+VS ED +GFS
Sbjct: 159 GGVHQDLPEKLVQDIGGWCDPFLKALDDIDDLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ + +G LADI A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFMCRGHQLADIAAVL 384
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y+LAVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|349699177|ref|ZP_08900806.1| NADH dehydrogenase subunit D [Gluconacetobacter europaeus LMG
18494]
Length = 418
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 144/285 (50%), Positives = 194/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNHI+ + + LD GA+TP W +EEREK++EFYE ASGAR HA Y
Sbjct: 122 AKWIRVMFAEITRILNHILNLTSFGLDCGALTPALWGYEEREKLIEFYEAASGARFHANY 181
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGVA D+P GL + I + TF +D++E +LT NR+W QRT +G+ + E AL +
Sbjct: 182 VRPGGVARDLPAGLEERIADWARTFPKWIDDLESLLTSNRIWKQRTVGIGVFTTEQALAW 241
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG LR SG+ WDLR+ QPYD Y+ EF++P+G G+ +I + EMR+S+RI+ Q
Sbjct: 242 GFSGPCLRASGVPWDLRRSQPYDNYDKVEFNVPVGRQGDCYDRYLIRVAEMRESVRIINQ 301
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ + G ++ D KI+ P R EMK GY VPPGATYT E PKGE
Sbjct: 302 CLEHIRPGPIKVRDHKITPPPRREMKRSMEALIHHFKLFTEGYHVPPGATYTVTETPKGE 361
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+ GF+HL A++++ + LAD VAII
Sbjct: 362 FGVYLVADGSNRPYRCKIRPTGFSHLQAIDEMSRRHMLADAVAII 406
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PH+GLLHRGTEKLIEYKTY +ALPYFDRLDYVS MC EQ ++LAVEKLLNIE
Sbjct: 58 GEVVARAIPHVGLLHRGTEKLIEYKTYPKALPYFDRLDYVSPMCEEQAFALAVEKLLNIE 117
Query: 363 VPLRAKYIRVMFT 375
P RAK+IRVMF
Sbjct: 118 APERAKWIRVMFA 130
>gi|49147198|ref|YP_025791.1| NADH dehydrogenase subunit 7 [Pseudendoclonium akinetum]
gi|33439213|gb|AAQ18750.1| NADH dehydrogenase subunit 7 (mitochondrion) [Pseudendoclonium
akinetum]
Length = 396
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 142/285 (49%), Positives = 206/285 (72%), Gaps = 22/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITR+LNH++AV A+D GA+TPF + FEEREK+MEFYER SGARMH+AY
Sbjct: 102 AQFIRMLFAEITRVLNHLLAVTCFAMDTGALTPFLFAFEEREKLMEFYERVSGARMHSAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL DI+ + F++R+DE+E++LT NR++ QR ++G++ AEDA+ +
Sbjct: 162 FRPGGVATDLPAGLLQDIHVWADQFASRIDEIEELLTGNRIFKQRLVNIGVLKAEDAIAW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G SGV+LRGSGI +DLRK Q YD Y+ +F++P+GT+ + ++ ++EMR+SL I++Q
Sbjct: 222 GVSGVLLRGSGIAYDLRKAQSYDAYDQVQFNVPVGTNSDCYDRYLLRIEEMRESLSIIKQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++ +P G ++ D ++ SR+E K G+ VP G TY + EAPKGE
Sbjct: 282 TLDLVPTGPIKPADGPVA--SRAEFKSDMESLIRHFKASTSGFAVPVGETYCSSEAPKGE 339
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV VS+G ++PYR KIK+P +A L A++ +GKG ++AD+VAII
Sbjct: 340 FGVLFVSNGANRPYRVKIKSPDYASLQAIDILGKGHYIADVVAII 384
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 54/65 (83%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
D HIGLLHRGTEKLIEYKT QALPYFDRLDYVS+M E Y LAVE+L +EVP RA++
Sbjct: 45 DTHIGLLHRGTEKLIEYKTVLQALPYFDRLDYVSVMSMEHSYCLAVERLTEMEVPRRAQF 104
Query: 370 IRVMF 374
IR++F
Sbjct: 105 IRMLF 109
>gi|315122723|ref|YP_004063212.1| NADH dehydrogenase subunit D [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496125|gb|ADR52724.1| NADH dehydrogenase subunit D [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 396
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DIP L++DI + +F A LD++ +LTE+R++ QR D+G V EDA GFS
Sbjct: 159 GGVHQDIPPVLVEDIGCWCDSFPAVLDDISGLLTESRIFKQRNVDIGTVKLEDAWGLGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG G+ ++ M EMR+S++I+ Q ++
Sbjct: 219 GVMIRGSGAAWDLRKSQPYECYAELDFDIPIGKKGDCYDRYLVRMMEMRESIKIIRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V D KI P R++MK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDNRVGPVFASDSKIIPPRRADMKRSMEALIHHFKLYTEGYHVPVGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRC+I+APGFAHL A+E + KG LAD+ AI+
Sbjct: 339 EFGVYLVSDGSNKPYRCRIRAPGFAHLQAMEFLCKGHQLADVSAIL 384
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KT+ QA+PYFDRLDYV+ M E Y+LAVEKLL IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIETKTFLQAVPYFDRLDYVAPMNQEHAYALAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK+IR +NFGPQHPAAHGVL L E+
Sbjct: 3 EKKIRGFTMNFGPQHPAAHGVLRLILEL 30
>gi|338974264|ref|ZP_08629626.1| NADH-ubiquinone oxidoreductase chain D [Bradyrhizobiaceae bacterium
SG-6C]
gi|338232991|gb|EGP08119.1| NADH-ubiquinone oxidoreductase chain D [Bradyrhizobiaceae bacterium
SG-6C]
Length = 402
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 105 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRV 164
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F +D++E +LT+NR++ QR D+G+V+ E A +GFS
Sbjct: 165 GGVHQDLPPALINDIDAWCDPFLKVVDDLETLLTDNRIFKQRNVDIGVVTLEQAWEWGFS 224
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y+ +FDIPIG +G+ I M+EMRQS+RI++Q I
Sbjct: 225 GVMVRGSGAAWDLRKSQPYECYDEMDFDIPIGKNGDCYDRYCIRMEEMRQSVRIMKQCIE 284
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V DD KI+ P RSEMK G VP G Y AVEAPKG
Sbjct: 285 KLRAPEGQGPVVVDDNKIAPPRRSEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKG 344
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LV+DGT+KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 345 EFGVFLVADGTNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAIL 390
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL I+
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIQ 97
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 98 VPRRGQLIRVLYC 110
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 12 MRNFTINFGPQHPAAHGVLRLVLEL 36
>gi|359790561|ref|ZP_09293452.1| NADH dehydrogenase subunit D [Mesorhizobium alhagi CCNWXJ12-2]
gi|359253479|gb|EHK56605.1| NADH dehydrogenase subunit D [Mesorhizobium alhagi CCNWXJ12-2]
Length = 396
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASGARMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F + ++++LTENR++ QR D+G+VS +DA +GFS
Sbjct: 159 GGVHQDLPQRLVEDIGKWIDPFLQTVANLDELLTENRIFKQRNVDIGVVSLDDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIP+G +G+ +I M+EMRQS +I+ Q +N
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYPEMEFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQCVN 278
Query: 223 ----KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K G V D K+ P+R+ MK GY VP G Y AVEAPKG
Sbjct: 279 LLLSKDGAGPVSNLDGKVVPPNRAAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCK++APGFAHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVSAVL 384
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E +SLAVE+LL I+
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDYVAPMNQEHAFSLAVERLLGID 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPRRGQIIRVLYS 104
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETSVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|92116744|ref|YP_576473.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
gi|122418316|sp|Q1QP34.1|NUOD1_NITHX RecName: Full=NADH-quinone oxidoreductase subunit D 1; AltName:
Full=NADH dehydrogenase I subunit D 1; AltName:
Full=NDH-1 subunit D 1
gi|91799638|gb|ABE62013.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
Length = 396
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/286 (53%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGARMHA Y R
Sbjct: 99 IRVLYCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARMHANYFRV 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI+ F F D++E +LTENR++ QR + V DA +GFS
Sbjct: 159 GGVHQDLPSKLLDDIWDFCDPFLKVCDDLEGLLTENRIFKQRNVGIAEVKLADAWGWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG HG+ ++ M+EMRQS+RI++Q +
Sbjct: 219 GVMVRGSGAAWDLRKAQPYECYSELDFDIPIGKHGDCYDRYLVRMEEMRQSVRIMKQCLE 278
Query: 223 K--MPGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K +P G+ V T D KI PSR+EMK G+ VP G Y AVEAPKG
Sbjct: 279 KLRLPEGQGPVATRDHKIVPPSRAEMKRSMEAMIEHFKLYTEGHRVPAGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT++PY+CKI+AP FAHL+A++ + +G LAD+ AII
Sbjct: 339 EFGVYLVSDGTNQPYKCKIRAPSFAHLSAMDFLTRGHMLADVSAII 384
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYV+ M E + LA EKLLNI
Sbjct: 32 GEVVRRVDPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVAPMNQEHAFCLATEKLLNIT 91
Query: 363 VPLRAKYIRVMFT 375
+P R + IRV++
Sbjct: 92 IPKRGQLIRVLYC 104
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VE RN INFGPQHPAAHGVL L E+
Sbjct: 2 VEAAPRNFTINFGPQHPAAHGVLRLVLEL 30
>gi|163850514|ref|YP_001638557.1| NADH dehydrogenase I subunit D [Methylobacterium extorquens PA1]
gi|240137579|ref|YP_002962050.1| NADH dehydrogenase I subunit D [Methylobacterium extorquens AM1]
gi|418058653|ref|ZP_12696622.1| NAD(P)H-quinone oxidoreductase subunit H [Methylobacterium
extorquens DSM 13060]
gi|218534414|sp|A9W1N0.1|NUOD_METEP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|163662119|gb|ABY29486.1| NADH dehydrogenase I, D subunit [Methylobacterium extorquens PA1]
gi|240007547|gb|ACS38773.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
[Methylobacterium extorquens AM1]
gi|373567798|gb|EHP93758.1| NAD(P)H-quinone oxidoreductase subunit H [Methylobacterium
extorquens DSM 13060]
Length = 396
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 150/289 (51%), Positives = 201/289 (69%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y
Sbjct: 96 AQLIRTLFCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L+DDI F F +D++++++ NR++ QR D+GIVS ++A+ +
Sbjct: 156 FRPGGVHQDLPPALIDDIEAFCDPFLKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSGI WDLRK QPY+ YE EFDIP+G +G+ VI M+EMR+S++I+ Q
Sbjct: 216 GFSGVMVRGSGIPWDLRKSQPYELYEEMEFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQ 275
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
+ K+ P G+ + + D K + P R EMK G+ VP G Y AVEA
Sbjct: 276 CVAKLREPAGQGPIASIDGKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDGT+KPYRCKI+APGFAHL A++ + +G LAD+ ++
Sbjct: 336 PKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVL 384
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA PYFDRLDYV+ M E + LA+E+L IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYFDRLDYVAPMNQEHAFCLAIERLAGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IR +F
Sbjct: 92 VPRRAQLIRTLFC 104
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNIRNFSINFGPQHPAAHGVLRLVLEL 30
>gi|402772312|ref|YP_006591849.1| NADH-quinone oxidoreductase subunit D (NADH dehydrogenase I subunit
D) [Methylocystis sp. SC2]
gi|401774332|emb|CCJ07198.1| NADH-quinone oxidoreductase subunit D (NADH dehydrogenase I subunit
D) [Methylocystis sp. SC2]
Length = 406
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+AEI R+L+H++ V + A+DVGA+TP W +EEREK+M FYERASGARMHA Y RP
Sbjct: 109 IRVLYAEIGRLLSHLLNVTSQAMDVGALTPPLWGYEEREKLMVFYERASGARMHANYFRP 168
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGVA D+P L++DI F F +++++++ NR++ QR D+G++S EDA +GFS
Sbjct: 169 GGVARDLPDQLVEDIGAFCDPFLKVVEDLDELFIGNRIFKQRNVDIGVISLEDAWKWGFS 228
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ YE EFDIP+G HG+ VI M+EMRQS I++Q +
Sbjct: 229 GVMVRGSGAAWDLRKAQPYECYEEMEFDIPVGKHGDCYDRAVIRMEEMRQSTSIMKQCVE 288
Query: 223 KMPGGEVRTDDM----KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ E R M KI+ PSR EMK G+ VP G Y AVEAPKG
Sbjct: 289 KLMRAENRGPVMAPNHKITPPSRGEMKRSMEALIHHFKLFTEGFHVPQGEVYAAVEAPKG 348
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG KPYRCKI+APGFAHL+A++ + K LAD+ AI+
Sbjct: 349 EFGVYLVSDGGDKPYRCKIRAPGFAHLSAMDFLCKNHMLADVSAIL 394
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPH+G LHRGTEKL+E +TY Q +PYFDRLDY + M E + LA+E+LL +E
Sbjct: 42 GEVVERVDPHVGFLHRGTEKLMEARTYLQNVPYFDRLDYCAPMNQEHAFCLAIERLLGVE 101
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 102 VPRRGQLIRVLYA 114
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 26 PVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
P + +RN INFGPQHPAAHGVL L E+
Sbjct: 11 PESQGLRNFNINFGPQHPAAHGVLRLILEL 40
>gi|408379490|ref|ZP_11177084.1| NADH dehydrogenase subunit D [Agrobacterium albertimagni AOL15]
gi|407746974|gb|EKF58496.1| NADH dehydrogenase subunit D [Agrobacterium albertimagni AOL15]
Length = 396
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 202/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASGARMH+AY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARMHSAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F +LD+++D+LT NR++ QR D+G+VS +D +GFS
Sbjct: 159 GGVHQDLPHQLVEDIGKWCDQFPEKLDDIDDLLTGNRIFKQRNVDIGVVSLDDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y + +FDI +G +G+ +I M EMR+S++I++Q +N
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSDLDFDIMVGKNGDCYDRYLIRMFEMRESVKIMKQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDAKTGPVSSLDGKVVPPKRGEMKRSMEGLIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVFLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAIL 384
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QALPYFDRLDYV+ M E YSLAVEKLL+I+
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQALPYFDRLDYVAPMNQEHAYSLAVEKLLDIQ 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 EHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|114321116|ref|YP_742799.1| NADH dehydrogenase subunit D [Alkalilimnicola ehrlichii MLHE-1]
gi|122311305|sp|Q0A778.1|NUOD_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114227510|gb|ABI57309.1| NADH dehydrogenase subunit D [Alkalilimnicola ehrlichii MLHE-1]
Length = 417
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/312 (50%), Positives = 199/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +G H LDVGAMT F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGAHGLDVGAMTAFLYCFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPESMPKYEPSKFRSKKELELMNAARQGTMLDFIEDFTERFPGCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LTENR+W QR DVG+VS E AL GFSG MLRGSGI+WDLRK QPYD Y+ EFDIP+G
Sbjct: 214 LTENRIWRQRLVDVGVVSPERALQLGFSGPMLRGSGIEWDLRKKQPYDVYDRVEFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
T+G+ ++ ++EMRQS RI++Q ++ + G V +D K++ PSR EMK
Sbjct: 274 TNGDCYDRYLVRIEEMRQSNRIIKQCVDWLRHNPGPVMLEDHKVAPPSREEMKDDMESLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY PPG Y AVEAPKGEFG Y++SDG +KPYR K++APGFAHL+A++++
Sbjct: 334 HHFKLFTEGYTTPPGEVYAAVEAPKGEFGCYMISDGANKPYRVKLRAPGFAHLSAMDEMA 393
Query: 298 KGSFLADIVAII 309
+G LAD+VAII
Sbjct: 394 RGHMLADVVAII 405
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 55/72 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHR TEKL E K Y Q++ Y DRLDYVSM+CNE Y +A+EKLL IE
Sbjct: 30 GETVRRADPHIGLLHRATEKLAESKPYNQSIGYMDRLDYVSMLCNEHAYVMAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
P+RA+YIRVMF
Sbjct: 90 APIRAQYIRVMF 101
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ ++ +NFGPQHPAAHGVL + E+
Sbjct: 2 REFKSYTVNFGPQHPAAHGVLRMVLEM 28
>gi|62289754|ref|YP_221547.1| NADH dehydrogenase subunit D [Brucella abortus bv. 1 str. 9-941]
gi|82699682|ref|YP_414256.1| NADH dehydrogenase subunit D [Brucella melitensis biovar Abortus
2308]
gi|189023999|ref|YP_001934767.1| NADH dehydrogenase subunit D [Brucella abortus S19]
gi|237815241|ref|ZP_04594239.1| NADH dehydrogenase I, D subunit [Brucella abortus str. 2308 A]
gi|260545496|ref|ZP_05821237.1| pectinesterase [Brucella abortus NCTC 8038]
gi|260757780|ref|ZP_05870128.1| NADH dehydrogenase subunit D [Brucella abortus bv. 4 str. 292]
gi|260761605|ref|ZP_05873948.1| NADH dehydrogenase subunit D [Brucella abortus bv. 2 str. 86/8/59]
gi|376273467|ref|YP_005152045.1| NADH dehydrogenase subunit D [Brucella abortus A13334]
gi|423167070|ref|ZP_17153773.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI435a]
gi|423170554|ref|ZP_17157229.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI474]
gi|423173365|ref|ZP_17160036.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI486]
gi|423177349|ref|ZP_17163995.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI488]
gi|423179985|ref|ZP_17166626.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI010]
gi|423183117|ref|ZP_17169754.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI016]
gi|423185941|ref|ZP_17172555.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI021]
gi|423189081|ref|ZP_17175691.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI259]
gi|75505303|sp|Q57DU8.1|NUOD_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|123546639|sp|Q2YNG0.1|NUOD_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534392|sp|B2S546.1|NUOD_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|62195886|gb|AAX74186.1| NuoD, NADH dehydrogenase I, D subunit [Brucella abortus bv. 1 str.
9-941]
gi|82615783|emb|CAJ10781.1| Pectinesterase:NADH-ubiquinone oxidoreductase, chain 49kDa
[Brucella melitensis biovar Abortus 2308]
gi|189019571|gb|ACD72293.1| Pectinesterase [Brucella abortus S19]
gi|237790078|gb|EEP64288.1| NADH dehydrogenase I, D subunit [Brucella abortus str. 2308 A]
gi|260096903|gb|EEW80778.1| pectinesterase [Brucella abortus NCTC 8038]
gi|260668098|gb|EEX55038.1| NADH dehydrogenase subunit D [Brucella abortus bv. 4 str. 292]
gi|260672037|gb|EEX58858.1| NADH dehydrogenase subunit D [Brucella abortus bv. 2 str. 86/8/59]
gi|363401073|gb|AEW18043.1| NADH dehydrogenase subunit D [Brucella abortus A13334]
gi|374540602|gb|EHR12102.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI474]
gi|374541958|gb|EHR13448.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI435a]
gi|374542694|gb|EHR14181.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI486]
gi|374549830|gb|EHR21272.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI010]
gi|374550349|gb|EHR21788.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI016]
gi|374550633|gb|EHR22069.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI488]
gi|374558739|gb|EHR30132.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI259]
gi|374559329|gb|EHR30717.1| NADH-quinone oxidoreductase subunit D [Brucella abortus bv. 1 str.
NI021]
Length = 396
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 195/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F L ++D++T NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPDQLIEDIGKWIDPFFTTLKNLDDLITPNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFDIP+G +G+ +I M+EMRQS RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMEFDIPVGKNGDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKERVGPVSNTDHKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYR K++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVSDGSNKPYRFKLRAPGFAHLQAMDFLCRGHMLADVSAIL 384
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E Y+LAVE+LL+IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMEAKTYLQAVPYLDRLDYVAPMNQEHAYALAVERLLDIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E Q+RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETQVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|424881059|ref|ZP_18304691.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392517422|gb|EIW42154.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 396
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY+RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYIRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS E+ +GFS
Sbjct: 159 GGVHQDLPEQLVQDIGAWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEECWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESIRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y++AVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYAMAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|254509923|ref|ZP_05121990.1| NADH dehydrogenase (quinone), D subunit [Rhodobacteraceae bacterium
KLH11]
gi|221533634|gb|EEE36622.1| NADH dehydrogenase (quinone), D subunit [Rhodobacteraceae bacterium
KLH11]
Length = 408
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 199/285 (69%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++E+ R+LNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 114 IRVLYSEVGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 173
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + F A LD+++ +LTENR++ QR D+G+V+ +D YGFS
Sbjct: 174 GGVHQDLPPELLDDIEAWSHEFPAVLDDIDGLLTENRIFKQRNADIGVVTEDDIQKYGFS 233
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ FEF IP+G +G+ ++ M+EMRQSL I+ QAI
Sbjct: 234 GVMVRGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLVRMEEMRQSLLIIRQAIA 293
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG + KI+ P RS+MK G+ VP G Y AVEAPKGE
Sbjct: 294 KIRECPGDVLARG--KITPPKRSDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGE 351
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR K++APGF HL A++ + G LAD+ AII
Sbjct: 352 FGVYLVADGTNKPYRAKLRAPGFLHLQAMDHVAGGHQLADVAAII 396
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 47 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 106
Query: 363 VPLRAKYIRVMFT 375
VP R IRV+++
Sbjct: 107 VPRRGSLIRVLYS 119
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 18 EQKIRNFNINFGPQHPAAHGVLRLVLEL 45
>gi|424874780|ref|ZP_18298442.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393170481|gb|EJC70528.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 396
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY+RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYIRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS E+ +GFS
Sbjct: 159 GGVHQDLPEQLVQDIGAWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEECWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y++AVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYAMAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|407974324|ref|ZP_11155233.1| NADH dehydrogenase subunit D [Nitratireductor indicus C115]
gi|407430013|gb|EKF42688.1| NADH dehydrogenase subunit D [Nitratireductor indicus C115]
Length = 396
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI ++I F LD ++++LT NR++ QR D+G+V+ E+A +GFS
Sbjct: 159 GGVHQDLPEKLIEDIGNWIDPFFKTLDNLDNLLTGNRIFKQRNVDIGVVTLEEAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIP+G +G+ +I M+EMRQS +I+ Q +
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYPEMDFDIPVGKNGDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKDRVGPVSNMDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPEGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHLLADVAAIL 384
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++L VE+L+ I+
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAVPYFDRLDYVAPMNQEHAFALGVERLIGID 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPRRGQLIRVLYS 104
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETSVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|371907982|emb|CAP18144.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Xanthonema
exile]
Length = 317
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/245 (58%), Positives = 183/245 (74%), Gaps = 22/245 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITRILNH++AVG HA+DVGA+TP W FEEREK++EFYER SGAR+HAAY RP
Sbjct: 75 IRVIFAEITRILNHLLAVGCHAIDVGAITPILWSFEEREKLIEFYERVSGARIHAAYFRP 134
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV+LD+P+GL+DDIY FI FS RLDE+E++LT NR+W QR D+G+V+A DA+ +GFS
Sbjct: 135 GGVSLDLPLGLMDDIYVFIIQFSTRLDELEELLTSNRIWKQRLVDIGVVTASDAIAHGFS 194
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GV+LRGSGI WDLR QPYD Y + +F+IP+GT G+ +I ++E+RQSL I+ Q +N
Sbjct: 195 GVILRGSGINWDLRISQPYDVYSSIKFEIPVGTKGDCYDRYLIRLEEIRQSLSIIHQCLN 254
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G VR D IS PSR+ +K G VP G TYTA EAPKGEFGV
Sbjct: 255 NIPQGPVR--DENISPPSRTNLKSSIESLIHHFKLYTEGVVVPSGETYTATEAPKGEFGV 312
Query: 268 YLVSD 272
YLVS+
Sbjct: 313 YLVSN 317
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL +
Sbjct: 8 GEIVERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIIGQEHTYCLAVENLLQCK 67
Query: 363 VPLRAKYIRVMF 374
VP+R+ YIRV+F
Sbjct: 68 VPIRSIYIRVIF 79
>gi|83951741|ref|ZP_00960473.1| NADH dehydrogenase delta subunit [Roseovarius nubinhibens ISM]
gi|83836747|gb|EAP76044.1| NADH dehydrogenase delta subunit [Roseovarius nubinhibens ISM]
Length = 407
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 148/285 (51%), Positives = 198/285 (69%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 111 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 170
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F L +++ +LTENR++ QR D+G+V+ +D L++GFS
Sbjct: 171 GGVHQDLPEDLIDDIETWAKAFPNVLADIDGLLTENRIFKQRNADIGVVTEKDILDWGFS 230
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ FEF +P+G +G+ + M+EMRQSL I+ QAI
Sbjct: 231 GVMVRGSGLAWDLRRAQPYECYDEFEFQVPVGKNGDCYDRYLCRMEEMRQSLHIIHQAIE 290
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ + + D + KI+ P R EMK G+ VP G Y AVEAPKGE
Sbjct: 291 KLRAPDGKGDILARGKITPPKRGEMKTSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKGE 350
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG++KPYR KI+APGF HL A++ + G LAD+ AII
Sbjct: 351 FGVYLVSDGSNKPYRSKIRAPGFLHLQAMDHVAGGHQLADVAAII 395
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 44 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 104 VPRRASLIRVLYS 116
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRLVLEL 42
>gi|241204089|ref|YP_002975185.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240857979|gb|ACS55646.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 396
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY+RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYIRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS E+ +GFS
Sbjct: 159 GGVHQDLPEQLVQDIGAWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEECWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDARTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y++AVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYAMAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|300023451|ref|YP_003756062.1| NADH dehydrogenase I subunit D [Hyphomicrobium denitrificans ATCC
51888]
gi|299525272|gb|ADJ23741.1| NADH dehydrogenase I, D subunit [Hyphomicrobium denitrificans ATCC
51888]
Length = 396
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASGARMHA Y R
Sbjct: 99 IRVLFSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARMHAKYFRI 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDIY F F +D+++ +LTENR++ QR D+G+VS ++A +GFS
Sbjct: 159 GGVHQDLPEKLIDDIYAFCDPFLKVVDDIDVLLTENRIFKQRNVDIGVVSLDEAFAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMR+S ++++Q
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSELDFDIPIGKNGDCYDRYLIRMQEMRESTKLMKQCCE 278
Query: 223 --KMPGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K PGG+ ++ K+ P R EMK G+ VP G Y AVEAPKG
Sbjct: 279 LLKSPGGQGPHSAENKKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGDVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DG++KPYRCKI+APGF HLAA++ + +G LAD+ AII
Sbjct: 339 EFGVYLVADGSNKPYRCKIRAPGFPHLAAMDFLNRGHMLADVSAII 384
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA+ YFDRLDYV+ M E + LA E+LL I
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYMQAIGYFDRLDYVAPMNQEHAFCLAAERLLGIT 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPRRGQLIRVLFS 104
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +IRN INFGPQHPAAHGVL L E+
Sbjct: 3 ETEIRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|393766078|ref|ZP_10354635.1| NADH dehydrogenase I subunit D [Methylobacterium sp. GXF4]
gi|392728451|gb|EIZ85759.1| NADH dehydrogenase I subunit D [Methylobacterium sp. GXF4]
Length = 396
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 150/289 (51%), Positives = 198/289 (68%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y
Sbjct: 96 AQLIRVLFCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L+DDI F F + +++D++ NR++ QR D+GIVS ++ + +
Sbjct: 156 FRPGGVHQDLPPKLIDDIDAFCDPFLQVVQDLDDLVMANRIFKQRNVDIGIVSVDECMEW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPY+ YE EFDIP+G +G+ VI M+EMR+S +I++Q
Sbjct: 216 GFSGVMLRGSGIPWDLRKAQPYECYEEMEFDIPVGRNGDTYDRQVIRMEEMRESAKIMKQ 275
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
K+ P G+ + D K + P R EMK G+ VP G Y AVEA
Sbjct: 276 CCAKLREPAGQGPIAAIDGKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDGT+KPYRCKI+APGFAHL A++ + +G LAD+ ++
Sbjct: 336 PKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVL 384
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA PYFDRLDYVS M E + LA+EKL IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYFDRLDYVSPMNQEHAFCLAIEKLAGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+F
Sbjct: 92 VPRRAQLIRVLFC 104
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNIRNFAINFGPQHPAAHGVLRLVLEL 30
>gi|114764721|ref|ZP_01443906.1| NADH dehydrogenase subunit D [Pelagibaca bermudensis HTCC2601]
gi|114542921|gb|EAU45942.1| NADH dehydrogenase subunit D [Pelagibaca bermudensis HTCC2601]
Length = 410
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/288 (50%), Positives = 201/288 (69%), Gaps = 23/288 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY
Sbjct: 111 AQLIRVLYCEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHAAY 170
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L++D+ + F ARL +++D+LTENR++ QR D+G+V+ +D Y
Sbjct: 171 FRPGGVHQDLPPELIEDLDTWCDEFPARLQDIDDLLTENRIFKQRNADIGVVTEDDIQKY 230
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGV++RGSG+ WDLR+ QPY+ Y+ FEF IP+G +G+ + M EMR+S++I++Q
Sbjct: 231 GFSGVLVRGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLCRMAEMRESVKIMKQ 290
Query: 220 AINKMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAP 261
A+ K+ E + D + K++ P RSEMK G+ VP G Y VEAP
Sbjct: 291 ALEKLRLPENQGDVLARGKVTPPKRSEMKTSMEALIHHFKLYTEGFHVPEGEVYACVEAP 350
Query: 262 KGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
KGEFGVYLV+DG++KPYR K++APGF HL A++ I KG LAD+ AI+
Sbjct: 351 KGEFGVYLVADGSNKPYRAKLRAPGFLHLQAMDYICKGHQLADVAAIL 398
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV M E + LA+E+L +E
Sbjct: 47 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVGTMNQEHAWCLAIERLTGVE 106
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 107 VPRRAQLIRVLYC 119
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+QIRN INFGPQHPAAHGVL L E+
Sbjct: 18 EQQIRNFNINFGPQHPAAHGVLRLVLEL 45
>gi|188580282|ref|YP_001923727.1| NADH dehydrogenase I subunit D [Methylobacterium populi BJ001]
gi|218534416|sp|B1ZA43.1|NUOD_METPB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|179343780|gb|ACB79192.1| NADH dehydrogenase I, D subunit [Methylobacterium populi BJ001]
Length = 396
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 200/289 (69%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y
Sbjct: 96 AQLIRTLFCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L+DDI F F +D++++++ NR++ QR D+GIVS ++A+ +
Sbjct: 156 FRPGGVHQDLPPALIDDIEAFCDPFLKVVDDLDNLVMANRIFKQRNVDIGIVSVDEAMAW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSGI WDLRK QPY+ YE +FDIP+G +G+ VI M+EMR+S++I+ Q
Sbjct: 216 GFSGVMVRGSGIPWDLRKSQPYECYEEMDFDIPVGKNGDTYDRQVIRMEEMRESVKIMRQ 275
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
K+ P G+ + + D K + P R EMK G+ VP G Y AVEA
Sbjct: 276 CCAKLREPSGQGPIASIDGKFAPPPRREMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDGT+KPYRCKI+APGFAHL A++ + +G LAD+ ++
Sbjct: 336 PKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQAMDWMCRGHLLADVSCVL 384
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA PYFDRLDYVS M E + LA+E+L IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYLQATPYFDRLDYVSPMNQEHAFCLAIERLAGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IR +F
Sbjct: 92 VPRRAQLIRTLFC 104
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 3 EHNIRNFSINFGPQHPAAHGVLRLVLEL 30
>gi|295689626|ref|YP_003593319.1| NADH dehydrogenase I subunit D [Caulobacter segnis ATCC 21756]
gi|295431529|gb|ADG10701.1| NADH dehydrogenase I, D subunit [Caulobacter segnis ATCC 21756]
Length = 416
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 208/310 (67%), Gaps = 34/310 (10%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWL 81
+ L+ VE IR +I +L++EI RILNH++ V T A+DVGA+TP W
Sbjct: 107 EKLLGVEVPIRGQIIR------------VLYSEIGRILNHLLNVTTQAMDVGALTPPLWG 154
Query: 82 FEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLT 141
FEEREK+M FYERA GAR+H+ Y RPGGV D+P L++DI + F D++E ++T
Sbjct: 155 FEEREKLMVFYERACGARLHSNYFRPGGVHQDLPPELIEDIDAWAKAFPKICDDIEGLIT 214
Query: 142 ENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTH 201
+NR++ QR D+G+V+ E+A+++GFSGVM+RGSGI WDLR+ QPY+ Y +FEFDIP+G +
Sbjct: 215 DNRIFKQRNVDIGVVTKEEAIDWGFSGVMVRGSGIAWDLRRSQPYENYNDFEFDIPLGKN 274
Query: 202 GN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK--------- 245
G+ + M+EMR+S +I+ QA + G V ++D K+S P R+EMK
Sbjct: 275 GDCYDRYLCRMQEMRESTKIIRQACEMLRKTHGPVLSEDNKVSPPRRAEMKRSMEALIHH 334
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
G+ P G Y VEAPKGEFGV++VSDGT+KPYRCKI+APGF HLAA++ + +G
Sbjct: 335 FKLYTEGFKTPEGEVYACVEAPKGEFGVFVVSDGTNKPYRCKIRAPGFPHLAAMDWMNRG 394
Query: 300 SFLADIVAII 309
LAD+ AI+
Sbjct: 395 HQLADVSAIL 404
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKL+E +TY Q +PYFDRLDYV+ M E + LA+EKLL +E
Sbjct: 54 GEIVERVDPHIGLLHRGTEKLMEARTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGVE 113
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 114 VPIRGQIIRVLYS 126
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +R INFGPQHPAAHGVL L E+
Sbjct: 25 ETPVRKFNINFGPQHPAAHGVLRLVLEL 52
>gi|90417840|ref|ZP_01225752.1| NADH dehydrogenase I, D subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90337512|gb|EAS51163.1| NADH dehydrogenase I, D subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 396
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+R+HAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRLHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F D++E +LT+NR++ QR D+G+V EDA GFS
Sbjct: 159 GGVHADLPQQLIEDIGAWCDPFLKVCDDIEGLLTDNRIFKQRNVDIGVVGIEDAWAMGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLRK QPY+ Y+ +FDIP+G +G+ +I M EMR+S++I++Q I
Sbjct: 219 GVMIRGSGVAWDLRKSQPYECYDEMDFDIPVGKNGDCYDRYLIRMIEMRESVKIMKQCIA 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + KI P R +MK G+ VP G Y AVEAPKG
Sbjct: 279 QLTGEHSTGPVSATEGKIVPPKRGQMKRSMEALIHHFKLYTEGFHVPEGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPYRCKIKAPGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVADGTNKPYRCKIKAPGFAHLQAMDMLCRGHMLADVSAIL 384
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE+KTY Q++PYFDRLDYV+ M E + LAVE+L +E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEHKTYLQSIPYFDRLDYVAPMNQEHAFCLAVERLTGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 EIDVRNFNINFGPQHPAAHGVLRLVVEL 30
>gi|221234966|ref|YP_002517402.1| NADH dehydrogenase subunit D [Caulobacter crescentus NA1000]
gi|220964138|gb|ACL95494.1| NADH-quinone oxidoreductase chain D [Caulobacter crescentus NA1000]
Length = 416
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 208/310 (67%), Gaps = 34/310 (10%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWL 81
+ L+ VE IR +I +L++EI RILNH++ V T A+DVGA+TP W
Sbjct: 107 EKLLGVEVPIRGQIIR------------VLYSEIGRILNHLLNVTTQAMDVGALTPPLWG 154
Query: 82 FEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLT 141
FEEREK+M FYERA GAR+H+ Y RPGGV D+P L++DI + F D++E ++T
Sbjct: 155 FEEREKLMVFYERACGARLHSNYFRPGGVHQDLPPELVEDIDTWAKAFPKICDDIEGLIT 214
Query: 142 ENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTH 201
+NR++ QR D+G+VS E+A+++GFSGVM+RGSGI WDLR+ QPY+ Y +FEFDIP+G +
Sbjct: 215 DNRIFKQRNVDIGVVSKEEAISWGFSGVMVRGSGIAWDLRRSQPYENYNDFEFDIPLGKN 274
Query: 202 GN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK--------- 245
G+ + M+EMR+S +I+ QA + G V ++D K++ P R+EMK
Sbjct: 275 GDCYDRYLCRMQEMRESTKIIRQACEMLRKTHGPVLSEDNKVAPPRRAEMKRSMEALIHH 334
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
G+ P G Y VEAPKGEFGV++VSDGT+KPYRCKI+APGF HLAA++ + +G
Sbjct: 335 FKLYTEGFKTPAGEVYACVEAPKGEFGVFVVSDGTNKPYRCKIRAPGFPHLAAMDWMNRG 394
Query: 300 SFLADIVAII 309
LAD+ AI+
Sbjct: 395 HQLADVSAIL 404
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKL+E +TY Q +PYFDRLDYV+ M E + LA+EKLL +E
Sbjct: 54 GEIVERVDPHIGLLHRGTEKLMEARTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGVE 113
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 114 VPIRGQIIRVLYS 126
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +R INFGPQHPAAHGVL L E+
Sbjct: 25 ETPVRKFNINFGPQHPAAHGVLRLVLEL 52
>gi|16126195|ref|NP_420759.1| NADH dehydrogenase subunit D [Caulobacter crescentus CB15]
gi|81782639|sp|Q9A6X4.1|NUOD_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|13423411|gb|AAK23927.1| NADH dehydrogenase I, D subunit [Caulobacter crescentus CB15]
Length = 398
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 208/310 (67%), Gaps = 34/310 (10%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWL 81
+ L+ VE IR +I +L++EI RILNH++ V T A+DVGA+TP W
Sbjct: 89 EKLLGVEVPIRGQIIR------------VLYSEIGRILNHLLNVTTQAMDVGALTPPLWG 136
Query: 82 FEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLT 141
FEEREK+M FYERA GAR+H+ Y RPGGV D+P L++DI + F D++E ++T
Sbjct: 137 FEEREKLMVFYERACGARLHSNYFRPGGVHQDLPPELVEDIDTWAKAFPKICDDIEGLIT 196
Query: 142 ENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTH 201
+NR++ QR D+G+VS E+A+++GFSGVM+RGSGI WDLR+ QPY+ Y +FEFDIP+G +
Sbjct: 197 DNRIFKQRNVDIGVVSKEEAISWGFSGVMVRGSGIAWDLRRSQPYENYNDFEFDIPLGKN 256
Query: 202 GN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK--------- 245
G+ + M+EMR+S +I+ QA + G V ++D K++ P R+EMK
Sbjct: 257 GDCYDRYLCRMQEMRESTKIIRQACEMLRKTHGPVLSEDNKVAPPRRAEMKRSMEALIHH 316
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
G+ P G Y VEAPKGEFGV++VSDGT+KPYRCKI+APGF HLAA++ + +G
Sbjct: 317 FKLYTEGFKTPAGEVYACVEAPKGEFGVFVVSDGTNKPYRCKIRAPGFPHLAAMDWMNRG 376
Query: 300 SFLADIVAII 309
LAD+ AI+
Sbjct: 377 HQLADVSAIL 386
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKL+E +TY Q +PYFDRLDYV+ M E + LA+EKLL +E
Sbjct: 36 GEIVERVDPHIGLLHRGTEKLMEARTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGVE 95
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 96 VPIRGQIIRVLYS 108
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +R INFGPQHPAAHGVL L E+
Sbjct: 7 ETPVRKFNINFGPQHPAAHGVLRLVLEL 34
>gi|365879939|ref|ZP_09419335.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 375]
gi|365292077|emb|CCD91866.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 375]
Length = 398
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 146/286 (51%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ E++RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHA Y RP
Sbjct: 101 IRVLYHELSRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMTFYERASGSRMHANYYRP 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D+++ +L+ NR++ QR D+G+V+ A +GFS
Sbjct: 161 GGVHQDLPPKLIDDIEAWCDPFLRVVDDLDALLSRNRIFKQRNVDIGVVTLAQAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPYD Y +FD+PIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKAQPYDCYAEMDFDVPIGRNGDCYDRYLIRMEEMRQSVRIMKQCIA 280
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V D K++ P R EMK G+ VPPG Y AVEAPKG
Sbjct: 281 KLRAADGQGPVLIQDNKVAPPRRGEMKRSMEALIHHFKLYTEGFHVPPGEIYVAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDG++KPYRCKI++PGFAHL A++ + +G LAD+ AI+
Sbjct: 341 EFGVFLVSDGSNKPYRCKIRSPGFAHLQAMDMLCRGHLLADVSAIL 386
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ + E + LA+E+LL I
Sbjct: 34 GEVVRRVDPHIGLLHRGTEKLIEVKTYLQAIPYFDRLDYVAPLTQEHAFCLAIERLLGIA 93
Query: 363 VPLRAKYIRVMF 374
VP R + IRV++
Sbjct: 94 VPRRGQLIRVLY 105
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ RN INFGPQHPAAHGVL L E+
Sbjct: 5 QQSFRNFTINFGPQHPAAHGVLRLVLEL 32
>gi|414162404|ref|ZP_11418651.1| NADH-quinone oxidoreductase subunit D [Afipia felis ATCC 53690]
gi|410880184|gb|EKS28024.1| NADH-quinone oxidoreductase subunit D [Afipia felis ATCC 53690]
Length = 405
Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 201/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 108 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMMFYERASGSRMHAAFFRI 167
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D++E +LT+NR++ QR D+G+V+ + A +GFS
Sbjct: 168 GGVHQDLPPKLIDDIDAWCDPFLQVVDDLETLLTDNRIFKQRNVDIGVVTLDQAWEWGFS 227
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y+ EFDIPIG +G+ I ++EMRQS+RI++Q I
Sbjct: 228 GVMVRGSGAAWDLRKAQPYECYDEMEFDIPIGKNGDCYDRYCIRVEEMRQSVRIMKQCIA 287
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V +D KI+ P R EMK G VP G Y AVEAPKG
Sbjct: 288 KLRSPDGQGPVVIEDNKITPPRRGEMKRSMEALIHHFKLYTEGVRVPAGEVYAAVEAPKG 347
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPY+CKI+APGFAHL A++ I KG LAD+ AI+
Sbjct: 348 EFGVYLVADGTNKPYKCKIRAPGFAHLQAMDFICKGHLLADVSAIL 393
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL I
Sbjct: 41 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIT 100
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 101 VPRRGQLIRVLYS 113
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
RN INFGPQHPAAHGVL L E+
Sbjct: 16 RNFTINFGPQHPAAHGVLRLVLEL 39
>gi|291242405|ref|XP_002741098.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 2,
mitochondrial-like [Saccoglossus kowalevskii]
Length = 416
Score = 296 bits (759), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 168/352 (47%), Positives = 219/352 (62%), Gaps = 49/352 (13%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT-----RIL 59
V+YPD++ +KW W+DN P EK + N+ INFGPQHPAAHGVL L E++ R
Sbjct: 55 VMYPDEQTSKWLAPPWDDNDPPAEKDVSNLQINFGPQHPAAHGVLRLVMELSGESVVRCD 114
Query: 60 NHI--MAVGTHA----------------LDVGAMT---PFFWLFEEREKMMEFYERASGA 98
H+ + GT LD +M F L ER +E RA
Sbjct: 115 PHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCFTLATERLLNIEAPIRAKYI 174
Query: 99 R-MHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVS 157
R + A R + + LD ++ F +E E MLT NR+W RT DVG+++
Sbjct: 175 RVLFAEQTRILNHIMGLCTHALD--VGAMTPFFWLFEEREKMLTANRIWKLRTVDVGVIT 232
Query: 158 AEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQ 212
AE+A+NYGFSGVMLRGSGIKWD+RK PY+ Y+ +FD+PIG++G+ + ++EMRQ
Sbjct: 233 AEEAINYGFSGVMLRGSGIKWDIRKAAPYEVYDRMDFDVPIGSNGDCYDRYLCRVEEMRQ 292
Query: 213 SLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTA 257
SLRI+ Q +N+MP GE++ DD KI+ PSR+EMK GY VPPG+TYTA
Sbjct: 293 SLRIILQCLNEMPEGEIKIDDNKITPPSRAEMKDSMESLIHHFKLFTEGYQVPPGSTYTA 352
Query: 258 VEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+++ KG LAD+VAII
Sbjct: 353 IEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDRLAKGHMLADVVAII 404
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPL 365
V DPH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQC++LA E+LLNIE P+
Sbjct: 110 VVRCDPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCFTLATERLLNIEAPI 169
Query: 366 RAKYIRVMFT 375
RAKYIRV+F
Sbjct: 170 RAKYIRVLFA 179
>gi|149914580|ref|ZP_01903110.1| NADH-quinone oxidoreductase chain D [Roseobacter sp. AzwK-3b]
gi|149811373|gb|EDM71208.1| NADH-quinone oxidoreductase chain D [Roseobacter sp. AzwK-3b]
Length = 405
Score = 296 bits (759), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 147/285 (51%), Positives = 199/285 (69%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 109 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 168
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F L +++ +LTENR++ QR D+G+V+ +D L++GFS
Sbjct: 169 GGVHQDLPTELIDDIETWAHEFPRVLADIDGLLTENRIFKQRNADIGVVTEKDILDWGFS 228
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ ++ M+EMRQSL I+ Q I
Sbjct: 229 GVMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIHQCIA 288
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ + + D + KI+ PSR EMK G+ VP G Y AVEAPKGE
Sbjct: 289 KLRAPDGQGDVLARGKITPPSRGEMKTSMEALIHHFKLYTEGFRVPEGEVYAAVEAPKGE 348
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR K++APGF HL A++ + G LAD+ AII
Sbjct: 349 FGVYLVADGTNKPYRAKLRAPGFLHLQAMDYVAGGHQLADVAAII 393
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 42 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 101
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 102 VPRRASLIRVLYS 114
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN +NFGPQHPAAHGVL L E+
Sbjct: 13 EQKIRNFNLNFGPQHPAAHGVLRLVLEL 40
>gi|354593931|ref|ZP_09011974.1| NADH dehydrogenase subunit D [Commensalibacter intestini A911]
gi|353673042|gb|EHD14738.1| NADH dehydrogenase subunit D [Commensalibacter intestini A911]
Length = 416
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 143/282 (50%), Positives = 190/282 (67%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LFAEITRILNH++ V LD GAMTP W +EEREKMMEFYE SGAR HA Y R
Sbjct: 123 IRVLFAEITRILNHLLNVTAMGLDCGAMTPALWAYEEREKMMEFYEGVSGARFHANYFRH 182
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGVA D+P G+ D I ++ F +D++E +LT NR+W QRT +G+ + E+AL++GFS
Sbjct: 183 GGVAKDLPAGMEDRIGKWVKDFPKIVDDIEGLLTNNRIWKQRTVGIGVCTTEEALSWGFS 242
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
G LR SG+ WDLR+ QPYD Y+ +F +P+ G+ +I + EMR+S +I+EQ +N
Sbjct: 243 GPCLRASGVPWDLRRSQPYDNYDKVDFQVPVARQGDSYDRYLIRIVEMRESAKIIEQCLN 302
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
KM G ++ + K+S P R +MK G+ VP G TYTAVE+PKGEFGV
Sbjct: 303 KMQPGAIKVESEKVSPPKRKDMKHSMESLINHFKLYSGGFHVPAGTTYTAVESPKGEFGV 362
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLV+DG +KPYRCKI+ GF+HL AL ++ LAD+VAII
Sbjct: 363 YLVADGGTKPYRCKIRPTGFSHLQALGELSHRHMLADMVAII 404
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V PHIGLLHRGTEKL+E+K Y + LPYFDRLDY S MC E Y LA EKLL ++
Sbjct: 56 GEVVKRATPHIGLLHRGTEKLLEHKAYHKGLPYFDRLDYASPMCEEHAYVLATEKLLRVD 115
Query: 363 VPLRAKYIRVMFT 375
VP RAK+IRV+F
Sbjct: 116 VPDRAKWIRVLFA 128
>gi|90423905|ref|YP_532275.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris BisB18]
gi|122476332|sp|Q215I0.1|NUOD_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|90105919|gb|ABD87956.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisB18]
Length = 396
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/289 (52%), Positives = 196/289 (67%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY
Sbjct: 96 AQLIRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMMFYERASGSRMHAAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L+DDI + F +D+++ +LT NR++ QR D+G+V+ A +
Sbjct: 156 FRVGGVHQDLPPKLVDDIEAWCVAFPQVIDDLDRLLTGNRIFKQRNVDIGVVTLAQAWEW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLRK QPY+ Y EFDIPIG +G+ I M+EMRQS+RI++Q
Sbjct: 216 GFSGVMVRGSGAAWDLRKSQPYECYAELEFDIPIGKNGDCYDRYCIRMEEMRQSVRIMQQ 275
Query: 220 AINKM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
I K+ GG V D KI P R EMK G+ VP G Y AVEA
Sbjct: 276 CIAKLRAPDGGGPVAVQDNKIFPPRRGEMKRSMESLIHHFKLYTEGFRVPAGEVYVAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGV+LVSDG++KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 336 PKGEFGVFLVSDGSNKPYKCKIRAPGFAHLQAMDFISRGHLLADVSAIL 384
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL+I
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLDIA 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 92 VPRRAQLIRVLYC 104
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 EGALRNFTINFGPQHPAAHGVLRLVLEL 30
>gi|378825579|ref|YP_005188311.1| NADH dehydrogenase I subunit D [Sinorhizobium fredii HH103]
gi|365178631|emb|CCE95486.1| NADH dehydrogenase I chain D [Sinorhizobium fredii HH103]
Length = 396
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GARMH+AY+RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHSAYIRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F +D+++++LT NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPHELVEDIGKWIDPFLKTVDDIDELLTGNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + +FDIPIG +G+ +I M EMRQS I+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLQFDIPIGKNGDCYDRYLIRMIEMRQSALIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDAKVGPVSSLDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVFLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVL 384
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVE+L E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDYVAPMNQEHAFALAVERLTGTE 91
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 92 VPIRGQLIRVLYS 104
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|329889335|ref|ZP_08267678.1| NADH-quinone oxidoreductase chain 4 [Brevundimonas diminuta ATCC
11568]
gi|328844636|gb|EGF94200.1| NADH-quinone oxidoreductase chain 4 [Brevundimonas diminuta ATCC
11568]
Length = 392
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/285 (51%), Positives = 198/285 (69%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++E+ RILNH++ A+DVGA+TP W EEREK+M FYERA GAR+HA Y RP
Sbjct: 96 IRVLYSEMGRILNHLLNATMQAMDVGALTPPLWGHEEREKLMVFYERACGARLHANYFRP 155
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ L+DDI + + F A+L ++E ++TENR++ QR D+G+VS E+AL +GFS
Sbjct: 156 GGVHQDLTPELIDDIGRWCAEFPAKLADIESLVTENRIFKQRNVDIGVVSKENALAWGFS 215
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGS I WDLRK QPYD Y + EFDI +G +G+ ++ ++EMRQS+RI+EQ I+
Sbjct: 216 GVMLRGSDIAWDLRKAQPYDCYADMEFDIAVGKNGDCWDRYLVRVEEMRQSVRIMEQCIH 275
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG V ++D K++ P R EMK G+ P G Y AVEAPKGE
Sbjct: 276 KLRNCPGEPVLSEDHKVTPPRRGEMKRSMEALIHHFKLYTEGFKTPEGEVYAAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGT+KPYR K+ APGF HL A++ + +G LAD+ AI+
Sbjct: 336 FGVYLVSDGTNKPYRVKLSAPGFRHLQAMDWMNRGHMLADVSAIL 380
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E +TY Q +PY DRLDYVS M E + LA+E+LL ++
Sbjct: 29 GELVTRVDPHIGLLHRGTEKLMEARTYLQNIPYLDRLDYVSPMNQEHAFCLAIERLLGLD 88
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 89 VPYRGQLIRVLYS 101
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
R INFGPQHPAAHGVL L E +TR+ HI
Sbjct: 4 RKFTINFGPQHPAAHGVLRLVLELDGELVTRVDPHI 39
>gi|114327963|ref|YP_745120.1| NADH dehydrogenase subunit D [Granulibacter bethesdensis CGDNIH1]
gi|122327075|sp|Q0BSK5.1|NUOD_GRABC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114316137|gb|ABI62197.1| NADH-quinone oxidoreductase chain D [Granulibacter bethesdensis
CGDNIH1]
Length = 400
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/285 (51%), Positives = 196/285 (68%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +FAEITRILNH++ + T+ALD GAMTP W EEREK++EF+E SGAR HA Y
Sbjct: 104 AQWIRTMFAEITRILNHLLNLTTYALDGGAMTPVLWGHEEREKLLEFHEAVSGARFHANY 163
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GL D I + F A +D++ +L++NR+W QR D+G ++ E AL +
Sbjct: 164 FRPGGVAKDLPAGLTDRIADWTEKFPAFIDDMAGLLSDNRIWKQRVVDIGRMTPEQALAW 223
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG +R SGI WDLRK QPYD Y + +F++P+G +G+ ++ ++EMRQS+RIV+Q
Sbjct: 224 GFSGPCIRASGIPWDLRKSQPYDKYADVDFEVPVGRNGDCYDRYLVRVEEMRQSVRIVKQ 283
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ K+ G ++ D KI+ P R+EMK GY VP GATYTAVE+PKGE
Sbjct: 284 CLGKIRPGPIKVQDHKITPPPRAEMKRSMEALIHHFKLYTEGYHVPEGATYTAVESPKGE 343
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+++PYRCKI+ GFAHL A++ + LAD V II
Sbjct: 344 FGVYLVSDGSNRPYRCKIRPTGFAHLQAIDVMAHRHMLADAVVII 388
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYK+Y QALPYFDRLDYVS MC E ++LA EKLL I
Sbjct: 40 GEVVERADPHIGLLHRGTEKLIEYKSYLQALPYFDRLDYVSPMCEEHAFALATEKLLGIT 99
Query: 363 VPLRAKYIRVMFT 375
P RA++IR MF
Sbjct: 100 APERAQWIRTMFA 112
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I + INFGPQHPAAHGVL L E+
Sbjct: 13 EIDSHAINFGPQHPAAHGVLRLVLEL 38
>gi|91977354|ref|YP_570013.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris BisB5]
gi|123735350|sp|Q135X7.1|NUOD_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91683810|gb|ABE40112.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisB5]
Length = 416
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/289 (52%), Positives = 200/289 (69%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY
Sbjct: 116 AQLIRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMMFYERASGSRMHAAY 175
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L+ DI + +F +D++E +LT+NR++ QR D+G+V+ E A +
Sbjct: 176 FRVGGVHQDLPPQLVADIDSWCDSFIQVVDDLETLLTDNRIFKQRNVDIGVVTLEQAWEW 235
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ + ++EMRQS+RI++Q
Sbjct: 236 GFSGVMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYCLRVEEMRQSIRIMKQ 295
Query: 220 AINKM--PGGEVRT--DDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
I K+ P G+ R DD KI P R EMK G+ VP G Y AVEA
Sbjct: 296 CIAKLRAPDGQGRVAIDDNKIFPPRRGEMKRSMESLIHHFKLYTEGFRVPEGEVYVAVEA 355
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDG++KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 356 PKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAIL 404
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYV+ M E + LAVEKLL I
Sbjct: 52 GEVVERVDPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVAPMNQEHAFCLAVEKLLGIA 111
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 112 VPRRAQLIRVLYC 124
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 26 LRNFTINFGPQHPAAHGVLRLVLEL 50
>gi|365895273|ref|ZP_09433394.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. STM 3843]
gi|365423992|emb|CCE05936.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. STM 3843]
Length = 398
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/286 (53%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHA Y R
Sbjct: 101 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRV 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D+++ +LT NR++ QR D+G+V+ +DA +GFS
Sbjct: 161 GGVHQDLPSKLIDDIETWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVTLQDAWAWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPYD Y EFDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKAQPYDCYAEMEFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIA 280
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V D KIS P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLRAPDGQGPVMITDNKISPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYVAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDG++KPY+CKI+APGFAHL +++ I +G LAD+ AI+
Sbjct: 341 EFGVFLVSDGSNKPYKCKIRAPGFAHLQSMDFICRGHLLADVSAIL 386
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA PYFDRLDYV+ M E + LA EKLL IE
Sbjct: 34 GEVVERVDPHIGLLHRGTEKLIEAKTYMQATPYFDRLDYVAPMNQEHAFCLAAEKLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 94 VPRRGQLIRVLYC 106
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLEL 32
>gi|192291669|ref|YP_001992274.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris TIE-1]
gi|218534442|sp|B3Q7N3.1|NUOD_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|192285418|gb|ACF01799.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris TIE-1]
Length = 402
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/289 (51%), Positives = 203/289 (70%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+AEI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY
Sbjct: 102 AQLIRVLYAEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMMFYERASGSRMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L+DDI + F A +++++ +L++NR++ QR D+G+V+ + A ++
Sbjct: 162 FRVGGVHQDLPPKLVDDIDAWCDAFPAVVNDLDRLLSDNRIFKQRNVDIGVVTLDQAWSW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLRK QPY+ Y +F++PIG +G+ I M+EMRQS+RI++Q
Sbjct: 222 GFSGVMVRGSGAAWDLRKSQPYECYAELDFEVPIGKNGDCYDRYHIRMEEMRQSVRIMKQ 281
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
I K+ P G+ V DD KI P R EMK G+ VP G Y AVEA
Sbjct: 282 CIAKLRAPDGQGPVVVDDHKIFPPRRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVAVEA 341
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDG++KPY+CKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 342 PKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLSRGHLLADVSAIL 390
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LAVEKLL I
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAVEKLLGIA 97
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 98 VPRRAQLIRVLYA 110
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 12 VRNFTINFGPQHPAAHGVLRLVLEL 36
>gi|421598889|ref|ZP_16042215.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. CCGE-LA001]
gi|404268997|gb|EJZ33351.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. CCGE-LA001]
Length = 398
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY R
Sbjct: 101 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRV 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D+++ +LT NR++ QR D+G+V ++A +GFS
Sbjct: 161 GGVHQDLPQKLVDDIEAWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQ 280
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V +D K++ P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLNAPDGKGPVVVEDNKVAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 341 EFGVYLVSDGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAIL 386
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL IE
Sbjct: 34 GEVVARVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 94 VPRRGQLIRVLYC 106
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+Q+RN INFGPQHPAAHGVL L E + R+ HI
Sbjct: 6 EQLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHI 44
>gi|39936014|ref|NP_948290.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris CGA009]
gi|81562351|sp|Q6N5M5.1|NUOD_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|39649868|emb|CAE28390.1| NADH-ubiquinone dehydrogenase chain D [Rhodopseudomonas palustris
CGA009]
Length = 402
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 201/289 (69%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+AEI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY
Sbjct: 102 AQLIRVLYAEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMMFYERASGSRMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L+DDI + F A +++++ +L++NR++ QR D+G+V+ + A ++
Sbjct: 162 FRVGGVHQDLPPKLVDDIDAWCDAFPAVVNDLDRLLSDNRIFKQRNVDIGVVTLDQAWSW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLRK QPY+ Y +F++PIG +G+ I M+EMRQS+RI++Q
Sbjct: 222 GFSGVMVRGSGAAWDLRKSQPYECYAELDFEVPIGKNGDCYDRYHIRMEEMRQSVRIMKQ 281
Query: 220 AINKMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
I K+ G V DD KI P R EMK G+ VP G Y AVEA
Sbjct: 282 CIAKLRAPHGQGPVVVDDHKIFPPRRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVAVEA 341
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDG++KPY+CKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 342 PKGEFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLSRGHLLADVSAIL 390
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LAVEKLL I
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAVEKLLGIA 97
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 98 VPRRAQLIRVLYA 110
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 12 VRNFTINFGPQHPAAHGVLRLVLEL 36
>gi|163759540|ref|ZP_02166625.1| NADH dehydrogenase subunit D [Hoeflea phototrophica DFL-43]
gi|162283137|gb|EDQ33423.1| NADH dehydrogenase subunit D [Hoeflea phototrophica DFL-43]
Length = 396
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T ALDVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQALDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F D++E +LT+NR++ QR D+ IV +DA +GFS
Sbjct: 159 GGVHQDLPDDLVEDIGKWCDPFLQTCDDIEGLLTDNRIFKQRNVDIAIVKLDDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y +FDIPIG +G+ +I M+EMR+S++I++Q +
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYSEMDFDIPIGKNGDCYDRYLIRMQEMRESVKIMKQCVE 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V D KI P R EMK GY VP G YTAVEAPKG
Sbjct: 279 QLLGKEKTGPVSATDGKIVPPKRGEMKRSMEALIHHFKLYTEGYRVPEGEVYTAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ I +G LAD+ A +
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFICRGHQLADVSAAL 384
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEKL +
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEAKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLAGVT 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 EHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|340779456|ref|ZP_08699399.1| NADH dehydrogenase subunit D [Acetobacter aceti NBRC 14818]
Length = 430
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 140/285 (49%), Positives = 198/285 (69%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITR+LNHI+ + LD GA+TP W +EEREK++EF+E SGAR HA Y
Sbjct: 134 AKWIRVIFAEITRVLNHILNLTAMGLDCGAVTPALWGYEEREKLLEFHEAVSGARFHANY 193
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P G+ + I + F A +D++E +LTENR+W QRT +G+ ++E AL +
Sbjct: 194 FRPGGVARDMPAGMEEKIAAWAEEFPAWIDDLESLLTENRIWKQRTVGIGVFTSEQALAW 253
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
G+SG LRGSG+ WDLR+ QPYD Y+ +F+IP+ HG+ ++ + EMR+S++I++Q
Sbjct: 254 GWSGPCLRGSGVPWDLRRSQPYDNYDKVDFEIPVARHGDCYDRYLVRVAEMRESVKIIKQ 313
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++ ++ G ++ D K S P R+EMK Y VPPGATYTAVE PKGE
Sbjct: 314 SLAQIKPGAIKVQDPKFSPPPRAEMKRSMEALIHHFKLFTESYHVPPGATYTAVETPKGE 373
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG+++PYRCKI+ GFAHL A++++ + LAD VAII
Sbjct: 374 FGVYLVADGSNRPYRCKIRPTGFAHLQAIDELSRRGMLADAVAII 418
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA PHIGLLHRGTEKLIEYKTY +ALPYFDRLDY S MC E ++LA EKLL IE
Sbjct: 70 GEVVARAVPHIGLLHRGTEKLIEYKTYPKALPYFDRLDYASPMCEEHAFALATEKLLGIE 129
Query: 363 VPLRAKYIRVMFT 375
P RAK+IRV+F
Sbjct: 130 APDRAKWIRVIFA 142
>gi|116251469|ref|YP_767307.1| NADH dehydrogenase subunit D [Rhizobium leguminosarum bv. viciae
3841]
gi|218534452|sp|Q1MIL2.1|NUOD_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115256117|emb|CAK07198.1| putative NADH-quinone oxidoreductase subunit [Rhizobium
leguminosarum bv. viciae 3841]
Length = 396
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS ++ +GFS
Sbjct: 159 GGVHQDLPEQLVQDIGAWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLDECWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMR+S+RI++Q +N
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRESVRIMKQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKIRAPGYAHLQAMDFMCRGHQLADVAAVL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y++AVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYAMAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|414173774|ref|ZP_11428401.1| NADH-quinone oxidoreductase subunit D [Afipia broomeae ATCC 49717]
gi|410890408|gb|EKS38207.1| NADH-quinone oxidoreductase subunit D [Afipia broomeae ATCC 49717]
Length = 402
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 105 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRV 164
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D++E +LT+NR++ QR D+G+V+ + A +GFS
Sbjct: 165 GGVHQDLPPKLIDDIEAWCDPFLKVVDDLETLLTDNRIFKQRNVDIGVVTLDQAWEWGFS 224
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ I M+EMRQS+RI++Q I
Sbjct: 225 GVMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYCIRMEEMRQSVRIMKQCIE 284
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V +D KI+ P R EMK G VP G Y AVEAPKG
Sbjct: 285 KLRAPEGQGPVVVEDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKG 344
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LV+DGT+KPY+CKI+APGFAHL A++ I KG LAD+ AI+
Sbjct: 345 EFGVFLVADGTNKPYKCKIRAPGFAHLQAMDFICKGHLLADVSAIL 390
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL I
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIT 97
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 98 VPRRGQLIRVLYC 110
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 12 MRNFTINFGPQHPAAHGVLRLVLEL 36
>gi|430003207|emb|CCF18992.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Rhizobium sp.]
Length = 396
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 201/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F LD+++D+LT NR++ QR D+G+VS +D +GFS
Sbjct: 159 GGVHQDLPPELVEDIGAWCDPFLGTLDDIDDLLTGNRIFKQRNVDIGVVSLDDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y + +FDIPIG +G+ +I M EMR+S++I++Q +N
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYADMDFDIPIGKNGDCFDRYLIRMIEMRESVKIMKQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDARVGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPYR KI+APG+AHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVYLVADGTNKPYRLKIRAPGYAHLQAMDFMCRGHQLADVSAIL 384
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QALPYFDRLDYV+ M E Y LAVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQALPYFDRLDYVAPMNQEHAYCLAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 92 VPIRGQLIRVLYS 104
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 EHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|299135029|ref|ZP_07028220.1| NADH dehydrogenase I, D subunit [Afipia sp. 1NLS2]
gi|298590006|gb|EFI50210.1| NADH dehydrogenase I, D subunit [Afipia sp. 1NLS2]
Length = 405
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 108 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMMFYERASGSRMHAAFFRI 167
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F ++D++E +LT+NR++ QR D+G+V+ E A +GFS
Sbjct: 168 GGVHQDLPPKLIDDIDAWCDAFPEKVDDLEVLLTDNRIFKQRNVDIGVVTLEQAWEWGFS 227
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ I ++EM QS+RI++Q I
Sbjct: 228 GVMVRGSGAAWDLRKAQPYECYAEMDFDIPIGKNGDCYDRYCIRIEEMHQSVRIMKQCIA 287
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V +D KI+ P R EMK G VP G Y AVEAPKG
Sbjct: 288 KLRAPDGQGPVVIEDNKITPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKG 347
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPY+CKI+APGFAHL A++ I KG LAD+ AI+
Sbjct: 348 EFGVYLVADGTNKPYKCKIRAPGFAHLQAMDFICKGHLLADVSAIL 393
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL I
Sbjct: 41 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIT 100
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 101 VPRRGQLIRVLYC 113
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
RN INFGPQHPAAHGVL L E+
Sbjct: 16 RNFTINFGPQHPAAHGVLRLVLEL 39
>gi|84516739|ref|ZP_01004097.1| NADH dehydrogenase I, D subunit [Loktanella vestfoldensis SKA53]
gi|84509207|gb|EAQ05666.1| NADH dehydrogenase I, D subunit [Loktanella vestfoldensis SKA53]
Length = 412
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 197/286 (68%), Gaps = 27/286 (9%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH+M V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 118 IRVLYSEIGRILNHLMNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 177
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + TF LD+++ +LTENR++ QR D+G+V+ +D ++GFS
Sbjct: 178 GGVHQDLPDALIEDIDAWAVTFPKVLDDIDSLLTENRIFKQRNCDIGVVTEQDIHDWGFS 237
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ FEF +P+G +G+ + M+EMRQS I+ QA
Sbjct: 238 GVMVRGSGLAWDLRRAQPYECYDEFEFQVPVGKNGDCYDRFLCRMEEMRQSTHIIRQACA 297
Query: 223 KMPGGEVRTDDM----KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ V D+ K++ PSR EMK G+ VP G Y AVEAPKG
Sbjct: 298 KL---RVEKGDVMARGKMTPPSRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKG 354
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPYR K++APGF HL A++ I G LAD+ AII
Sbjct: 355 EFGVYLVADGTNKPYRAKLRAPGFLHLQAMDHIATGHQLADVAAII 400
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 53/73 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYVS M E + LA+EKL
Sbjct: 51 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVSPMNQEHAWCLAIEKLTGTV 110
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 111 VPRRASLIRVLYS 123
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 22 EQKIRNFNINFGPQHPAAHGVLRLVLEL 49
>gi|374575847|ref|ZP_09648943.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. WSM471]
gi|386402558|ref|ZP_10087336.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. WSM1253]
gi|374424168|gb|EHR03701.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. WSM471]
gi|385743184|gb|EIG63380.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. WSM1253]
Length = 398
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 199/289 (68%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY
Sbjct: 98 AQLIRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L+DDI + F +++++ +LT NR++ QR D+G+VS ++A +
Sbjct: 158 FRVGGVHQDLPQKLVDDIDAWCDPFLKVVEDLDRLLTANRIFKQRNVDIGVVSLKEAWEW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI++Q
Sbjct: 218 GFSGVMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQ 277
Query: 220 AINKMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
I K+ G V +D K++ P R EMK G VP G Y AVEA
Sbjct: 278 CIQKLNAADGKGPVVVEDNKVAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEA 337
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGV+L+SDGT+KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 338 PKGEFGVFLISDGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAIL 386
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + +A EKLL IE
Sbjct: 34 GEVVARVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCMAAEKLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 94 VPRRAQLIRVLYC 106
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+Q+RN INFGPQHPAAHGVL L E + R+ HI
Sbjct: 6 EQLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHI 44
>gi|316933894|ref|YP_004108876.1| NADH dehydrogenase I subunit D [Rhodopseudomonas palustris DX-1]
gi|315601608|gb|ADU44143.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris DX-1]
Length = 402
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 202/289 (69%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+AEI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY
Sbjct: 102 AQLIRVLYAEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMMFYERASGSRMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L+DDI + F A +D+++ +L++NR++ QR D+G+V+ + A +
Sbjct: 162 FRVGGVHQDLPPKLIDDIDAWCDAFPAVVDDLDRLLSDNRIFKQRNVDIGVVTLDQAWAW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLRK QPY+ Y +F++PIG +G+ I M+EMRQS+RI++Q
Sbjct: 222 GFSGVMVRGSGAAWDLRKSQPYECYAELDFEVPIGKNGDCYDRYHIRMEEMRQSVRIMKQ 281
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
I ++ P G+ V DD KI P R EMK G+ VP G Y AVEA
Sbjct: 282 CIARLRAPDGQGPVVVDDHKIFPPRRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVAVEA 341
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGV+LVSDGT+KPY+CK++APGFAHL A++ + +G LAD+ AI+
Sbjct: 342 PKGEFGVFLVSDGTNKPYKCKVRAPGFAHLQAMDFLSRGHLLADVSAIL 390
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LAVEKLL I
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDYVAPMNQEHAFCLAVEKLLGIA 97
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 98 VPRRAQLIRVLYA 110
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D +P +RN INFGPQHPAAHGVL L E+
Sbjct: 3 DAAIPDAPSVRNFTINFGPQHPAAHGVLRLVLEL 36
>gi|294011310|ref|YP_003544770.1| NADH dehydrogenase I chain D [Sphingobium japonicum UT26S]
gi|292674640|dbj|BAI96158.1| NADH dehydrogenase I chain D [Sphingobium japonicum UT26S]
Length = 411
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/281 (51%), Positives = 194/281 (69%), Gaps = 21/281 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+ FAE+TRI NH++ +G+H +DVGAMTP WLFE RE M FYERASGARMHAAY RPGG
Sbjct: 119 VFFAELTRIKNHMLNLGSHVMDVGAMTPNLWLFELREDCMNFYERASGARMHAAYFRPGG 178
Query: 110 VALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSG 168
V D+P+ LL DI ++ T RL ++ ++ +NR++ QR D+ +VS EDAL +GFSG
Sbjct: 179 VHQDVPLKLLTDIADWLDTRLPRLFEDAISLVADNRIFKQRNVDIAVVSKEDALKWGFSG 238
Query: 169 VMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINK 223
MLRGSGI WDLRK QPYD Y+ EFDIP+GT+ + ++ ++E+RQS RI++Q + +
Sbjct: 239 PMLRGSGIAWDLRKAQPYDVYDRMEFDIPVGTNFDCYDRFMVRVEEVRQSARIMKQCLAQ 298
Query: 224 MPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVY 268
MP G V + D K++ P R EMK G+ VP G Y A E+PKGEFGVY
Sbjct: 299 MPEGPVLSLDTKVAPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVY 358
Query: 269 LVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
LV+DG++KPYRCKI+ F+HL A++ + KG LAD A++
Sbjct: 359 LVADGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVL 399
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKLIE+KTY QALPYFDRLDY S M E Y LAVEKLLN+E
Sbjct: 50 GEIVERCDPHVGLLHRGTEKLIEHKTYLQALPYFDRLDYCSPMGMEHSYVLAVEKLLNLE 109
Query: 363 VPLRAKYIRVMFT 375
VP+RA+Y+RV F
Sbjct: 110 VPIRAQYLRVFFA 122
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +I+N INFGPQHPAAHGVL L E+
Sbjct: 21 DTEIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|395784247|ref|ZP_10464086.1| NADH-quinone oxidoreductase subunit D [Bartonella melophagi K-2C]
gi|395424002|gb|EJF90190.1| NADH-quinone oxidoreductase subunit D [Bartonella melophagi K-2C]
Length = 396
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/286 (50%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F LD+++ ++T NR++ QR D+G+VS+++A + GFS
Sbjct: 159 GGVHKDLPESLIEDIGNFIDPFLVALDKLDALITPNRIFKQRNVDIGVVSSDEAWSRGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q +N
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIICQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + KI P R+EMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTERNGPVSNLNHKIVPPKRNEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQACPYLDRLDYVAPMNQEHAFVLAIEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|13471404|ref|NP_102970.1| NADH dehydrogenase subunit D [Mesorhizobium loti MAFF303099]
gi|75543500|sp|Q98KQ8.1|NUOD_RHILO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|14022146|dbj|BAB48756.1| NADH-ubiquinone dehydrogenase chain D 1 [Mesorhizobium loti
MAFF303099]
Length = 396
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RI++HI+ V T A+DVGA+TP W F EREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYCEIGRIMSHILNVTTQAMDVGALTPPLWGFVEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F +D+++ +LT NR++ QR D+GIVS DA +GFS
Sbjct: 159 GGVHQDLPRQLVEDIGKWIDPFLKSIDDLDRLLTGNRIFKQRNVDIGIVSLADAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ ++ M+EMRQS RI+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMDFDIPIGKNGDCYDRYLVRMEEMRQSARIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D K+ P R+ MK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKESTGPVSNLDGKVVPPKRAAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCK++APGFAHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHLLADVTAVL 384
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PY DRLDY + M E ++LA E+LL IE
Sbjct: 32 GEVVDRVDPHIGLLHRGTEKLIEAKTYLQAVPYLDRLDYCAPMNQEHAFALAAERLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 92 VPKRGQLIRVLYC 104
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETSVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|390167266|ref|ZP_10219261.1| NADH dehydrogenase subunit D [Sphingobium indicum B90A]
gi|389590115|gb|EIM68118.1| NADH dehydrogenase subunit D [Sphingobium indicum B90A]
Length = 411
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/281 (51%), Positives = 194/281 (69%), Gaps = 21/281 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+ FAE+TRI NH++ +G+H +DVGAMTP WLFE RE M FYERASGARMHAAY RPGG
Sbjct: 119 VFFAELTRIKNHMLNLGSHVMDVGAMTPNLWLFELREDCMNFYERASGARMHAAYFRPGG 178
Query: 110 VALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSG 168
V D+P+ LL DI ++ T RL ++ ++ +NR++ QR D+ +VS EDAL +GFSG
Sbjct: 179 VHQDVPLKLLTDIADWLDTRLPRLFEDAISLVADNRIFKQRNVDIAVVSKEDALKWGFSG 238
Query: 169 VMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINK 223
MLRGSGI WDLRK QPYD Y+ EFDIP+GT+ + ++ ++E+RQS RI++Q + +
Sbjct: 239 PMLRGSGIAWDLRKAQPYDVYDRMEFDIPVGTNFDCYDRFMVRVEEVRQSARIMKQCLAQ 298
Query: 224 MPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVY 268
MP G V + D K++ P R EMK G+ VP G Y A E+PKGEFGVY
Sbjct: 299 MPEGPVLSLDTKVAPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVY 358
Query: 269 LVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
LV+DG++KPYRCKI+ F+HL A++ + KG LAD A++
Sbjct: 359 LVADGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVL 399
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKLIE+KTY QALPYFDRLDY S M E Y LAVEKLLN+E
Sbjct: 50 GEIVERCDPHVGLLHRGTEKLIEHKTYLQALPYFDRLDYCSPMGMEHSYVLAVEKLLNLE 109
Query: 363 VPLRAKYIRVMFT 375
VP+RA+Y+RV F
Sbjct: 110 VPIRAQYLRVFFA 122
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +I+N INFGPQHPAAHGVL L E+
Sbjct: 21 DTEIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|319405695|emb|CBI79318.1| NADH dehydrogenase I, D subunit [Bartonella sp. AR 15-3]
Length = 396
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/286 (51%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F LD+++ ++T NR++ QR D+G+V+ +A GFS
Sbjct: 159 GGVHQDLPENLIEDIGNFIDPFLIALDKLDTLITPNRIFKQRNVDIGVVNINEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q +N
Sbjct: 219 GVMIRGAGVAWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D K+ P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSSEKNGPVSSLDHKVVPPKRSEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADAPAIL 384
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|227821620|ref|YP_002825590.1| NADH dehydrogenase subunit D [Sinorhizobium fredii NGR234]
gi|227340619|gb|ACP24837.1| NADH dehydrogenase I chain D [Sinorhizobium fredii NGR234]
Length = 396
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GARMH+AY RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHSAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI ++I F +D+++++LT NR++ QR D+G+V EDA +GFS
Sbjct: 159 GGVHQDLPHELVEDIGNWIEPFLKTVDDIDELLTGNRIFKQRNVDIGVVKLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + +FDIPIG +G+ +I M EMRQS I+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRRAQPYECYSDMQFDIPIGKNGDCYDRYLIRMIEMRQSALIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDAKIGPVSSLDGKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDGT+KPYRCKI+APG+AHL A++ + +G LAD+ A++
Sbjct: 339 EFGVFLVSDGTNKPYRCKIRAPGYAHLQAMDFLCRGHQLADVSAVL 384
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVE+L E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEAKTYLQAVPYFDRLDYVAPMNQEHAFALAVERLTGTE 91
Query: 363 VPLRAKYIRVMFT 375
VP+R + IRV+++
Sbjct: 92 VPIRGQLIRVLYS 104
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|433774829|ref|YP_007305296.1| NADH dehydrogenase I, D subunit [Mesorhizobium australicum WSM2073]
gi|433666844|gb|AGB45920.1| NADH dehydrogenase I, D subunit [Mesorhizobium australicum WSM2073]
Length = 396
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 195/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RI++HI+ V T A+DVGA+TP W F EREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYCEIGRIMSHILNVTTQAMDVGALTPPLWGFVEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F LD+++ +LT NR++ QR D+GIVS DA +GFS
Sbjct: 159 GGVHQDLPRQLVEDIGKWIDPFLKSLDDLDRLLTGNRIFKQRNVDIGIVSLADAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIP+G +G+ ++ M+EMRQS RI+ Q I+
Sbjct: 219 GVMVRGSGSPWDLRKSQPYECYSEMDFDIPVGKNGDCFDRYLVRMEEMRQSARIMRQCID 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D K+ P R MK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKESTGPVSNLDGKVVPPKRQAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCK++APGFAHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVTAVL 384
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QALPY DRLDY + M E ++LA E+LL IE
Sbjct: 32 GEVVDRVDPHIGLLHRGTEKLIEAKTYLQALPYLDRLDYCAPMNQEHAFALAAERLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 92 VPRRGQLIRVLYC 104
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETSVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|304322204|ref|YP_003855847.1| NADH dehydrogenase subunit delta [Parvularcula bermudensis
HTCC2503]
gi|303301106|gb|ADM10705.1| NADH dehydrogenase delta subunit [Parvularcula bermudensis
HTCC2503]
Length = 406
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 195/279 (69%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L+ EI R L+H++ + T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY R GGV
Sbjct: 116 LYCEIGRQLSHLLNITTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRVGGV 175
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
D+P LLDDI + TF LD++E ++T+NR++ QR D+G+VS E+A +GFSGVM
Sbjct: 176 HQDLPQDLLDDIGEWCETFPQVLDDIEGLITDNRIFKQRNVDIGVVSREEAFAWGFSGVM 235
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WDLRK QPY+ Y+ +FDI IG +G+ ++ ++EM+QSL+I++Q + +
Sbjct: 236 LRGSGVPWDLRKSQPYEIYDELDFDIAIGKNGDCYDRYLVRIEEMKQSLKIMKQCLALIE 295
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
G + T+D +I P R EMK G VP G Y AVEAPKGEFGVYLV
Sbjct: 296 PGPIMTEDPRIGPPRRGEMKTSMEALINHFKLYTEGPKVPAGEAYAAVEAPKGEFGVYLV 355
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
S GT+KPYRCKI+APG+AHL A++ + +G LAD+ AII
Sbjct: 356 SQGTNKPYRCKIRAPGYAHLQAMDWMNRGHMLADVSAII 394
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYV+ M E + LA EKLL ++
Sbjct: 46 GEIVERVDPHIGLLHRGTEKLIEYKTYLQAIPYFDRLDYVAPMNQEHAFVLAAEKLLELD 105
Query: 363 VPLRAKYIRVMFT 375
VP RAK IR ++
Sbjct: 106 VPRRAKIIRTLYC 118
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
R INFGPQHPAAHGVL L E+
Sbjct: 21 RPFTINFGPQHPAAHGVLRLVLEL 44
>gi|381200919|ref|ZP_09908051.1| NADH dehydrogenase subunit D [Sphingobium yanoikuyae XLDN2-5]
Length = 411
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 196/286 (68%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + + FAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+AY
Sbjct: 114 AQYLRVFFAELTRICNHMLNLGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAY 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ T RL ++ ++ +NR++ QR D+ IVS EDAL
Sbjct: 174 FRPGGVHQDVPLKLLTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDISIVSKEDALK 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG MLRGSGI WD+RK QPYD Y+ EFD+P+GT + ++ ++E+RQS RI++
Sbjct: 234 WGFSGPMLRGSGIAWDIRKAQPYDVYDRMEFDVPVGTAFDCYDRFMVRVEEVRQSARIMK 293
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q +N+MP G + + D K+S P R EMK G+ VP G Y A E+PKG
Sbjct: 294 QCLNEMPEGPIASFDRKVSPPKRGEMKKSMEALIHHFKLYTEGFHVPAGEVYVATESPKG 353
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+ F+HL A++ + KG LAD A++
Sbjct: 354 EFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVL 399
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKLIE+KTY QALPYFDRLDY S + E Y LAVEKLLN+E
Sbjct: 50 GEIVERCDPHVGLLHRGTEKLIEHKTYMQALPYFDRLDYCSPLGMEHSYVLAVEKLLNLE 109
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV F
Sbjct: 110 VPLRAQYLRVFFA 122
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +I+N INFGPQHPAAHGVL L E+
Sbjct: 21 DTEIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|254294101|ref|YP_003060124.1| NADH dehydrogenase subunit D [Hirschia baltica ATCC 49814]
gi|254042632|gb|ACT59427.1| NADH dehydrogenase I, D subunit [Hirschia baltica ATCC 49814]
Length = 399
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/282 (51%), Positives = 196/282 (69%), Gaps = 20/282 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+ +H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY RP
Sbjct: 106 IRVLYSEIGRLQSHLLNVTTQAMDVGALTPITWGFEEREKLMVFYERASGSRMHAAYFRP 165
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LL+DIY F F LD++E +LTE+R++ QR ++G VS + AL++GFS
Sbjct: 166 GGVHQDVPPELLEDIYDFCDPFLKVLDDIEGLLTESRIFKQRNVNIGQVSTQTALDWGFS 225
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y +F IP+G HG+ + M EMR+S++I++Q I+
Sbjct: 226 GVMVRGSGMAWDLRRSQPYEIYSELDFGIPVGKHGDCYDRYICRMDEMRESIKIIKQCID 285
Query: 223 KMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGV 267
+P G V + K + P R EMK G+ VP G Y VEAPKGEFGV
Sbjct: 286 MIPIGPVLPERSKYAPPRRGEMKASMEALIHHFKLYTEGFHVPEGEVYATVEAPKGEFGV 345
Query: 268 YLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YLVSDG+++PYR KIKAPG+AHL A++ + KG LAD AI+
Sbjct: 346 YLVSDGSNRPYRAKIKAPGYAHLQAMDHLCKGHQLADASAIL 387
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +D HIGLLHRGTEKLIEYKTY QA+PYFDRLDY + M E + LA+EKL I
Sbjct: 39 GEIVERVDSHIGLLHRGTEKLIEYKTYLQAMPYFDRLDYCAPMNQEHAWCLAIEKLAGIT 98
Query: 363 VPLRAKYIRVMFT 375
VP RA +IRV+++
Sbjct: 99 VPRRASFIRVLYS 111
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
R INFGPQHPAAHGVL + E + R+ +HI
Sbjct: 14 RKFTINFGPQHPAAHGVLRMVLELDGEIVERVDSHI 49
>gi|126729552|ref|ZP_01745365.1| NADH dehydrogenase subunit D [Sagittula stellata E-37]
gi|126709671|gb|EBA08724.1| NADH dehydrogenase subunit D [Sagittula stellata E-37]
Length = 407
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/285 (49%), Positives = 200/285 (70%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+H+AY RP
Sbjct: 111 IRVLYSEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHSAYFRP 170
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F A+LD+++ +LTENR++ QR D+G+V+ ++ L++GFS
Sbjct: 171 GGVHQDLPPKLIDDIEQWAKEFPAKLDDIDGLLTENRIFKQRNADIGVVTEQEILDWGFS 230
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M EMR+S +I+ QA+
Sbjct: 231 GVMVRGSGLAWDLRRAQPYECYDEFDFKIPVGKNGDCYDRYLCRMAEMRESTKIILQAVE 290
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ + + D + K++ P R EMK G+ VP G Y AVEAPKGE
Sbjct: 291 KLRAPDGQGDVLARGKVTPPKRDEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGE 350
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR K++APG+ HL A++ + G LAD+ AII
Sbjct: 351 FGVYLVADGTNKPYRAKLRAPGYLHLQAMDHVASGHQLADVAAII 395
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+E+L +E
Sbjct: 44 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIERLTGVE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 104 VPRRASLIRVLYS 116
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRLVLEL 42
>gi|403530459|ref|YP_006664988.1| NADH dehydrogenase subunit D [Bartonella quintana RM-11]
gi|403232531|gb|AFR26274.1| NADH dehydrogenase subunit D [Bartonella quintana RM-11]
Length = 396
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI HFI F L ++ ++T NR++ QR D+G++S ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGHFIDPFLISLSRLDALVTPNRIFKQRNVDIGVISIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS RI+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 223 KMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G E V + + K+ P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLGSEKSGPVSSLNHKVVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAVPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|89067786|ref|ZP_01155240.1| NADH dehydrogenase delta subunit [Oceanicola granulosus HTCC2516]
gi|89046756|gb|EAR52811.1| NADH dehydrogenase delta subunit [Oceanicola granulosus HTCC2516]
Length = 404
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/287 (51%), Positives = 202/287 (70%), Gaps = 23/287 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L++EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY
Sbjct: 107 AQLIRVLYSEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHAAY 166
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L++DI + TF LD+++ +LTENR++ QR D+GIV+ ++ L++
Sbjct: 167 FRPGGVHQDLPDELVEDIDAWAKTFPEVLDDIDGLLTENRIFKQRNVDIGIVNEQEILDW 226
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG+ WDLR+ QPY+ Y+ FEF +P+G +G+ ++ M+EMRQS I+ Q
Sbjct: 227 GFSGVMVRGSGLAWDLRRAQPYECYDEFEFQVPVGKNGDCFDRYLVRMEEMRQSTHIIRQ 286
Query: 220 AINKM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
A K+ G+V K++ PSR++MK G+ VP G Y AVEAPK
Sbjct: 287 ACEKLRRERGDVLARG-KVTPPSRADMKTSMESLIHHFKLYTEGFHVPEGEVYCAVEAPK 345
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLV+DGT++PYR K++APGF HL A++ I KG LAD+ AII
Sbjct: 346 GEFGVYLVADGTNRPYRAKLRAPGFLHLQAMDHISKGHQLADVSAII 392
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL E
Sbjct: 43 GEIVERCDPHIGLLHRGTEKLMETRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGTE 102
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+++
Sbjct: 103 VPRRAQLIRVLYS 115
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|384218456|ref|YP_005609622.1| NADH ubiquinone oxidoreductase chain D [Bradyrhizobium japonicum
USDA 6]
gi|354957355|dbj|BAL10034.1| NADH ubiquinone oxidoreductase chain D [Bradyrhizobium japonicum
USDA 6]
Length = 398
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 101 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRV 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D+++ +LT NR++ QR D+G+V ++A +GFS
Sbjct: 161 GGVHQDLPQKLVDDIEAWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQ 280
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V +D K++ P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLNAADGKGPVVVEDNKVAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 341 EFGVYLISDGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAIL 386
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL IE
Sbjct: 34 GEVVARVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 94 VPRRGQLIRVLYC 106
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+Q+RN INFGPQHPAAHGVL L E + R+ HI
Sbjct: 6 EQLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHI 44
>gi|49474180|ref|YP_032222.1| NADH dehydrogenase subunit D [Bartonella quintana str. Toulouse]
gi|81696043|sp|Q6FZY8.1|NUOD_BARQU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|49239684|emb|CAF26059.1| NADH dehydrogenase I, D subunit [Bartonella quintana str. Toulouse]
Length = 396
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI HFI F L ++ ++T NR++ QR D+G++S ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGHFIDPFLISLSRLDALVTPNRIFKQRNVDIGVISIDEAWVRGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS RI+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 223 KMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G E V + + K+ P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLGSEKNGPVSSLNRKVVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAVPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|395781506|ref|ZP_10461924.1| NADH-quinone oxidoreductase subunit D [Bartonella rattimassiliensis
15908]
gi|395420939|gb|EJF87197.1| NADH-quinone oxidoreductase subunit D [Bartonella rattimassiliensis
15908]
Length = 396
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI FI F L +++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLVEDIGDFIDPFLVSLGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIPIG + + +I M+EMRQS +I+ Q +
Sbjct: 219 GVMIRGAGVSWDLRKSQPYECYDEMEFDIPIGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLGVEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRIKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL+IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLDIE 91
Query: 363 VPLRAKYIRVMFT 375
VP + + IRV+F+
Sbjct: 92 VPKKGQLIRVLFS 104
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|429744982|ref|ZP_19278437.1| NADH dehydrogenase subunit D [Neisseria sp. oral taxon 020 str.
F0370]
gi|429161641|gb|EKY04023.1| NADH dehydrogenase subunit D [Neisseria sp. oral taxon 020 str.
F0370]
Length = 418
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 199/306 (65%), Gaps = 47/306 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNH+M VG+HALD+GAMT + F +RE +M+ YE SGARMHAAY RPGGV
Sbjct: 101 MFAEVTRILNHLMGVGSHALDIGAMTAILYAFRDREDLMDLYEAVSGARMHAAYFRPGGV 160
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P +LD I F F +R+D++E +LT+NR+
Sbjct: 161 YRDLPDFMPKYEPSKYRSAKVLKELNAWREGSMLDFIDAFCERFPSRIDDLETLLTDNRI 220
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G +G+
Sbjct: 221 WKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDQMDFDIPVGVNGDCY 280
Query: 204 ---VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------------- 245
+ + EMRQS RI++Q + ++ G V TDD K++ P R+EMK
Sbjct: 281 DRYLCRINEMRQSTRIIKQCADWLRVNPGPVITDDHKVAPPKRTEMKLGMEDLIHHFKLF 340
Query: 246 --GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLA 303
G VP G TYTAVE PKGEFG+YL+SDG +KPYR KI+APGFAHL ++++ KG LA
Sbjct: 341 TEGMHVPEGETYTAVEHPKGEFGIYLISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLA 400
Query: 304 DIVAII 309
D+VAII
Sbjct: 401 DVVAII 406
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 55/66 (83%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E +T+ Q LPY DRLDYVSMM NEQ Y LAVEKLL I++P+RAKY
Sbjct: 38 DPHIGLLHRGTEKLAETRTFLQTLPYMDRLDYVSMMVNEQAYCLAVEKLLGIDIPIRAKY 97
Query: 370 IRVMFT 375
IR MF
Sbjct: 98 IRTMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|9757433|dbj|BAB08104.1| NADH dehydrogenase subunit 7 [Physarum polycephalum]
Length = 401
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 143/286 (50%), Positives = 196/286 (68%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++AV THA+DVGA+TPF W FEEREK++EFYER SGARMH AY
Sbjct: 104 ARYIRVLFLEITRILNHLLAVTTHAMDVGALTPFLWAFEEREKLIEFYERVSGARMHTAY 163
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+PIGLL+DIY F++ FS +L+++E++LT+NR++ R ++G V+ + A ++
Sbjct: 164 IRPGGVAYDLPIGLLNDIYEFLTPFSKKLNDMEELLTDNRIFKDRVVNIGKVTYDVAKDH 223
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVM+RGSGI +DLRK+ Y+ Y F F IP+G +G+ +I + EMR+S I+ Q
Sbjct: 224 AFSGVMVRGSGIPYDLRKIYNYENYNEFNFKIPVGLNGDCYDRFMIRVTEMRESCSIIAQ 283
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++ G + K P+RS+MK G VP YT+VEAPKGE
Sbjct: 284 VCERITDGFITVPFAKFVNPTRSDMKHLMEALIQHFKFFSNGIIVPEAIMYTSVEAPKGE 343
Query: 265 FGVYLVS-DGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG + S +KPYRC I+APGF HLAA+ ++ + LAD+VAII
Sbjct: 344 FGTLIASYQNNTKPYRCHIRAPGFHHLAAINRVSQNHSLADVVAII 389
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/82 (59%), Positives = 59/82 (71%), Gaps = 10/82 (12%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLN-- 360
+++ DPHIGLLHRGTEKLIE+K + Q+LPYFDRLDYVSMM E YSLAVE L N
Sbjct: 30 GEVIQNCDPHIGLLHRGTEKLIEHKNFLQSLPYFDRLDYVSMMAQEHAYSLAVENLFNDL 89
Query: 361 --------IEVPLRAKYIRVMF 374
I++P RA+YIRV+F
Sbjct: 90 CAKALLPYIDIPERARYIRVLF 111
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEIT 56
++N +INFGPQHPAAHGVL + E+
Sbjct: 3 SLKNYLINFGPQHPAAHGVLRMVVELN 29
>gi|451940719|ref|YP_007461357.1| NADH dehydrogenase subunit D [Bartonella australis Aust/NH1]
gi|451900106|gb|AGF74569.1| NADH dehydrogenase subunit D [Bartonella australis Aust/NH1]
Length = 396
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS E+A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLVALGKLDALVTPNRIFKQRNVDIGVVSIEEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ E V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSSEKNTPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|182676964|ref|YP_001831111.1| NADH dehydrogenase I, D subunit [Beijerinckia indica subsp. indica
ATCC 9039]
gi|218534365|sp|B2ILG7.1|NUOD2_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|182636594|gb|ACB97367.1| NADH dehydrogenase I, D subunit [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 396
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 145/286 (50%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI R+L+H++ + T ALD+GA+TP W FEEREK+M FYERASGARMHA Y R
Sbjct: 99 IRVLFCEIGRLLSHLLNITTQALDIGALTPPLWGFEEREKLMVFYERASGARMHANYFRV 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI++F F +++E++L+ NR++ QR DVG++S ++A GFS
Sbjct: 159 GGVHQDLPEKLLDDIWNFCEPFLKVCNDLEELLSYNRIFKQRNVDVGVISLDEAWTRGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y+ +FDIP+G HG+ +I M+EMRQS+RI++Q +
Sbjct: 219 GVMVRGSGAAWDLRKAQPYECYDELQFDIPVGKHGDCYDRYLIRMEEMRQSVRIMKQCLE 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G + + K++ P RSEMK G+ VP G Y AVEAPKG
Sbjct: 279 KLSSVDGKGPIIEQNHKVTPPRRSEMKRSMEALIQHFKLYTEGHHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDG++ PYRCKI+AP FAHL A++ + LAD+ AII
Sbjct: 339 EFGVYLISDGSNIPYRCKIRAPSFAHLQAIDFLSHKHMLADVSAII 384
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEY+TY QALPYFDRLDYV+ M E + LA+EKLL +
Sbjct: 32 GEVVERADPHIGLLHRGTEKLIEYRTYLQALPYFDRLDYVAPMNQEHAFCLAIEKLLQMP 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F
Sbjct: 92 VPRRGQLIRVLFC 104
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E RN +NFGPQHPAAHGVL L E+
Sbjct: 3 EAGFRNFTVNFGPQHPAAHGVLRLVLEL 30
>gi|294669095|ref|ZP_06734181.1| NADH dehydrogenase, D subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309087|gb|EFE50330.1| NADH dehydrogenase, D subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 418
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 199/306 (65%), Gaps = 47/306 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNH+M +G+HALD+GAMT + F +RE++M+ YE SGARMHAAY RPGGV
Sbjct: 101 MFAEVTRILNHLMGIGSHALDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYYRPGGV 160
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P +LD I F F R+D +E +LT+NR+
Sbjct: 161 YRDLPDFMPKYEASKFRNAKVLKELNEAREGTMLDFIEAFCQRFPGRIDTLETLLTDNRI 220
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VS E AL GF+GVMLRGSGI+WD+RK QPY+ Y+ +FDIP+G +G+
Sbjct: 221 WKQRTVGIGVVSPERALQKGFTGVMLRGSGIEWDVRKKQPYEVYDKMDFDIPVGVNGDCY 280
Query: 204 ---VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------------- 245
+ + EMRQS+RI++Q ++ ++ G V DD K++ P R+EMK
Sbjct: 281 DRYLCRINEMRQSVRIIQQCVDWLRVNPGPVIVDDHKVAPPKRTEMKFGMEDLIHHFKLF 340
Query: 246 --GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLA 303
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++ KG LA
Sbjct: 341 TEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLA 400
Query: 304 DIVAII 309
D+VAII
Sbjct: 401 DVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E +TY QALPY DRLDYVSMM NEQ Y LA+EKLL I++P+RAKY
Sbjct: 38 DPHIGLLHRGTEKLAETRTYLQALPYMDRLDYVSMMVNEQAYCLAIEKLLGIDIPIRAKY 97
Query: 370 IRVMFT 375
IR MF
Sbjct: 98 IRTMFA 103
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|367473653|ref|ZP_09473201.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 285]
gi|365274049|emb|CCD85669.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 285]
Length = 398
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHA Y R
Sbjct: 101 IRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRI 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI F F +D+++ +LT NR++ QR D+G+V+ + A +GFS
Sbjct: 161 GGVHQDLPTKLIDDIDAFCDPFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPYD Y +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYDVYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIA 280
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V D KI+ P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLRAPDGQGPVLITDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPY+CKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 341 EFGVYLVSDGTNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAIL 386
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA E+LL IE
Sbjct: 34 GEVVERVDPHIGLLHRGTEKLIESKTYLQAMPYFDRLDYVAPMNQEHAFCLAAERLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 94 VPRRGQLIRVLYS 106
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLEL 32
>gi|77463073|ref|YP_352577.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides 2.4.1]
gi|221638929|ref|YP_002525191.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides KD131]
gi|123592235|sp|Q3J3F8.1|NUOD_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|77387491|gb|ABA78676.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain D [Rhodobacter
sphaeroides 2.4.1]
gi|221159710|gb|ACM00690.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain D [Rhodobacter
sphaeroides KD131]
Length = 404
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 199/286 (69%), Gaps = 27/286 (9%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 110 IRVLYSEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ L++DI + F LD+++++LTENR++ QR D+GI+S +D L++GFS
Sbjct: 170 GGVHQDLTPRLIEDIEEWAEHFPKVLDDLDELLTENRIFKQRNVDIGIISEKDILDWGFS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y+ F+F IP+G +G+ + M+EMRQS RI++Q +
Sbjct: 230 GVMVRGSGFAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLA 289
Query: 223 KMPGGEVRTDDM----KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ V D+ K++ P R EMK G+ VP G Y AVEAPKG
Sbjct: 290 KL---RVEKGDVLARGKLTPPPRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKG 346
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT++PYR KI+APGF HL A++ I KG LAD+ AII
Sbjct: 347 EFGVYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAII 392
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+E+L +
Sbjct: 43 GEVVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIERLTGVA 102
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 103 VPRRASLIRVLYS 115
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+++ E+++RN INFGPQHPAAHGVL L E+
Sbjct: 8 DDVLTGEQKLRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|146278041|ref|YP_001168200.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides ATCC 17025]
gi|218534435|sp|A4WU31.1|NUOD_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|145556282|gb|ABP70895.1| NADH dehydrogenase I, D subunit [Rhodobacter sphaeroides ATCC
17025]
Length = 402
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 200/286 (69%), Gaps = 27/286 (9%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 108 IRVLYSEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAYFRP 167
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ L++DI + F LD+++ +LTENR++ QR D+G+V+ +D L++GFS
Sbjct: 168 GGVHQDLTPRLIEDIEEWAEHFPKVLDDLDGLLTENRIFKQRNVDIGVVTEKDILDWGFS 227
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M+EMRQS RI++Q +
Sbjct: 228 GVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLA 287
Query: 223 KMPGGEVRTDDM----KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ V D+ KI+ P R+EMK G+ VP G Y AVEAPKG
Sbjct: 288 KL---RVEKGDVLARGKITPPPRAEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKG 344
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT++PYR KI+APGF HL A++ I KG LAD+ AII
Sbjct: 345 EFGVYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAII 390
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+E+L ++
Sbjct: 41 GEVVERCDPHIGLLHRGTEKLMETRTYLQNLPYFDRLDYVAPMNQEHAWCLAIERLTGVQ 100
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 101 VPRRASLIRVLYS 113
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+++ E+++RN INFGPQHPAAHGVL L E+
Sbjct: 6 DDVLTGEQKLRNFNINFGPQHPAAHGVLRLVLEL 39
>gi|337268164|ref|YP_004612219.1| NADH dehydrogenase I subunit D [Mesorhizobium opportunistum
WSM2075]
gi|336028474|gb|AEH88125.1| NADH dehydrogenase I, D subunit [Mesorhizobium opportunistum
WSM2075]
Length = 396
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 195/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RI++HI+ V T A+DVGA+TP W F EREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYCEIGRIMSHILNVTTQAMDVGALTPPLWGFVEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F LD+++ +LT NR++ QR D+GIVS DA +GFS
Sbjct: 159 GGVHQDLPRQLVEDIGKWIDPFLKSLDDLDKLLTGNRIFKQRNVDIGIVSLADAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ ++ M+EMRQS +I+ Q ++
Sbjct: 219 GVMVRGSGSPWDLRKSQPYECYSEMDFDIPIGKNGDCFDRYLVRMEEMRQSAKIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D K+ P R MK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKESTGPVSNLDGKVVPPKRQAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCK++APGFAHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVTAVL 384
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PY DRLDY + M E ++LA E+LL IE
Sbjct: 32 GEVVDRVDPHIGLLHRGTEKLIEAKTYLQAVPYLDRLDYCAPMNQEHAFALAAERLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 92 VPRRGQLIRVLYC 104
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETSVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|319898885|ref|YP_004158978.1| NADH dehydrogenase I subunit D [Bartonella clarridgeiae 73]
gi|319402849|emb|CBI76400.1| NADH dehydrogenase I, D subunit [Bartonella clarridgeiae 73]
Length = 396
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F LD+++ ++T NR++ QR D+G+VS +A FS
Sbjct: 159 GGVHRDLPESLIEDIGNFIDPFLIALDKLDALITPNRIFKQRNVDIGVVSINEAWARAFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q +N
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVN 278
Query: 223 KMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G E V + D KI P RSEMK G+ P G Y AVEAPKG
Sbjct: 279 RLLGSERNGPVSSLDRKIVPPKRSEMKNSMEALIHHFKLYTEGFHTPSGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|126461945|ref|YP_001043059.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides ATCC 17029]
gi|429208414|ref|ZP_19199666.1| NADH-ubiquinone oxidoreductase chain D [Rhodobacter sp. AKP1]
gi|218534434|sp|A3PIX1.1|NUOD_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|126103609|gb|ABN76287.1| NADH dehydrogenase I, D subunit [Rhodobacter sphaeroides ATCC
17029]
gi|428188669|gb|EKX57229.1| NADH-ubiquinone oxidoreductase chain D [Rhodobacter sp. AKP1]
Length = 402
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 199/286 (69%), Gaps = 27/286 (9%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 108 IRVLYSEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAYFRP 167
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ L++DI + F LD+++++LTENR++ QR D+GI+S +D L++GFS
Sbjct: 168 GGVHQDLTPRLIEDIEEWAEHFPKVLDDLDELLTENRIFKQRNVDIGIISEKDILDWGFS 227
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y+ F+F IP+G +G+ + M+EMRQS RI++Q +
Sbjct: 228 GVMVRGSGFAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLA 287
Query: 223 KMPGGEVRTDDM----KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ V D+ K++ P R EMK G+ VP G Y AVEAPKG
Sbjct: 288 KL---RVEKGDVLARGKLTPPPRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKG 344
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT++PYR KI+APGF HL A++ I KG LAD+ AII
Sbjct: 345 EFGVYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAII 390
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+E+L +
Sbjct: 41 GEVVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIERLTGVA 100
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 101 VPRRASLIRVLYS 113
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+++ E+++RN INFGPQHPAAHGVL L E+
Sbjct: 6 DDVLTGEQKLRNFNINFGPQHPAAHGVLRLVLEL 39
>gi|163746200|ref|ZP_02153559.1| NADH dehydrogenase subunit D [Oceanibulbus indolifex HEL-45]
gi|161380945|gb|EDQ05355.1| NADH dehydrogenase subunit D [Oceanibulbus indolifex HEL-45]
Length = 414
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 150/289 (51%), Positives = 197/289 (68%), Gaps = 30/289 (10%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI R+LNH++ + T ALDVGA+TP W FEERE +M FYERA GAR+HAAY RP
Sbjct: 117 IRVLFCEIGRVLNHLLNITTQALDVGALTPPLWGFEERESLMIFYERACGARLHAAYFRP 176
Query: 108 GGVALDIPIGLLDDI----YHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
GGV D+P LLDDI F++ F +DE +LTENR++ QR D+GIV+ ++ L+
Sbjct: 177 GGVHQDLPPALLDDIEAWSKQFLTKFMVDIDE---LLTENRIFKQRNVDIGIVTEQEILD 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVE 218
YGFSGVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ M+EMRQS I++
Sbjct: 234 YGFSGVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCFDRYLCRMEEMRQSTYIIQ 293
Query: 219 QAINKMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEA 260
QAI K+ E + D + KI+ PSR+ MK G+ VP G Y AVEA
Sbjct: 294 QAIEKLRAPEGQGDILARGKITPPSRTAMKTDMESLIHHFKLYTEGFHVPEGEVYCAVEA 353
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLV+DG++KPYR KI+APGF HL A++ + G LAD+ AII
Sbjct: 354 PKGEFGVYLVADGSNKPYRAKIRAPGFLHLQAMDHVATGHQLADVAAII 402
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL
Sbjct: 50 GEVVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGTM 109
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+F
Sbjct: 110 VPRRASLIRVLFC 122
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 21 EQKIRNFNINFGPQHPAAHGVLRLVLEL 48
>gi|395787838|ref|ZP_10467430.1| NADH-quinone oxidoreductase subunit D [Bartonella birtlesii LL-WM9]
gi|395410460|gb|EJF77015.1| NADH-quinone oxidoreductase subunit D [Bartonella birtlesii LL-WM9]
Length = 396
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLIALGKLDALITPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y EFDIP+G + + +I M+EMRQS RI+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYNEMEFDIPVGKNSDCYDRYLIRMEEMRQSARIMRQCVD 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKNGPVSSLDHKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVKRVDPHIGLLHRGTEKLMETKTYLQAVPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
+P R + IRV+F+
Sbjct: 92 IPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVSVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|332557946|ref|ZP_08412268.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides WS8N]
gi|332275658|gb|EGJ20973.1| NADH dehydrogenase subunit D [Rhodobacter sphaeroides WS8N]
Length = 394
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 199/286 (69%), Gaps = 27/286 (9%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 100 IRVLYSEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAYFRP 159
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ L++DI + F LD+++++LTENR++ QR D+GI+S +D L++GFS
Sbjct: 160 GGVHQDLTPRLIEDIEEWAEHFPKVLDDLDELLTENRIFKQRNVDIGIISEKDILDWGFS 219
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y+ F+F IP+G +G+ + M+EMRQS RI++Q +
Sbjct: 220 GVMVRGSGFAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMRQSTRIIQQCLA 279
Query: 223 KMPGGEVRTDDM----KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ V D+ K++ P R EMK G+ VP G Y AVEAPKG
Sbjct: 280 KL---RVEKGDVLARGKLTPPPRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKG 336
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT++PYR KI+APGF HL A++ I KG LAD+ AII
Sbjct: 337 EFGVYLVADGTNRPYRAKIRAPGFLHLQAIDYIAKGHLLADVSAII 382
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+E+L +
Sbjct: 33 GEVVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIERLTGVA 92
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 93 VPRRASLIRVLYS 105
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+++RN INFGPQHPAAHGVL L E+
Sbjct: 4 EQKLRNFNINFGPQHPAAHGVLRLVLEL 31
>gi|159043860|ref|YP_001532654.1| NADH dehydrogenase subunit D [Dinoroseobacter shibae DFL 12]
gi|218534405|sp|A8LIT9.1|NUOD_DINSH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|157911620|gb|ABV93053.1| NADH dehydrogenase I, D subunit [Dinoroseobacter shibae DFL 12]
Length = 404
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 143/285 (50%), Positives = 203/285 (71%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RILNH++ + T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 110 IRVLYCEIGRILNHLLNITTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + F + +D+++ +LTENR++ QR D+G+V+ E+ L +G+S
Sbjct: 170 GGVHQDLPPDLLDDIEAWSHEFPSVMDDIDGLLTENRIFKQRNCDIGVVTEEEILEWGYS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ ++ M+EMR+SL+I++QAI
Sbjct: 230 GVMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLVRMQEMRESLKIIQQAIV 289
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ E + D + K++ PSR++MK G+ VP G Y AVEAPKGE
Sbjct: 290 KLR--ETKGDVLARGKLTPPSRADMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGE 347
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+L SDGT++PYR KI+APG+ HL +++ + KG LAD+ AII
Sbjct: 348 FGVFLKSDGTNRPYRAKIRAPGYLHLQSMDHVAKGHQLADVAAII 392
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 51/73 (69%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL
Sbjct: 43 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGTV 102
Query: 363 VPLRAKYIRVMFT 375
VP R IRV++
Sbjct: 103 VPRRGSLIRVLYC 115
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 19 NWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
N++D L E++IRN INFGPQHPAAHGVL L E+
Sbjct: 6 NFDDALTG-EQKIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|163868370|ref|YP_001609579.1| NADH dehydrogenase subunit D [Bartonella tribocorum CIP 105476]
gi|218534391|sp|A9IUP7.1|NUOD_BART1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|161018026|emb|CAK01584.1| NADH dehydrogenase I, D subunit [Bartonella tribocorum CIP 105476]
Length = 396
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L++++ ++T NR++ QR D+GIVS ++A FS
Sbjct: 159 GGVHQDLPESLVEDIGNFIDPFLVSLEKLDALVTPNRIFKQRNVDIGIVSIDEAWARSFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIPIG + + +I M+EMRQS +I+ Q +
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPIGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 223 KMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G E V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLGAEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLLNI+
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLNIK 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|429768405|ref|ZP_19300563.1| NADH dehydrogenase subunit D [Brevundimonas diminuta 470-4]
gi|429189186|gb|EKY30031.1| NADH dehydrogenase subunit D [Brevundimonas diminuta 470-4]
Length = 423
Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 147/285 (51%), Positives = 196/285 (68%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++E+ RILNH++ A+DVGA+TP W EEREK+M FYERA GAR+HA Y RP
Sbjct: 127 IRVLYSEMGRILNHLLNATMQAMDVGALTPPLWGHEEREKLMVFYERACGARLHANYFRP 186
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ L+DDI + + F A L+++E ++TENR++ QR D+G+VS E+AL +GFS
Sbjct: 187 GGVHQDLTPELIDDIGRWCAEFPAALNDIESLVTENRIFKQRNVDIGVVSKENALAWGFS 246
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVMLRGS I WDLRK QPYD Y + EFDI +G +G+ + ++EMRQS+ I+EQ I+
Sbjct: 247 GVMLRGSDIAWDLRKAQPYDCYADMEFDIAVGKNGDCWDRYLCRVEEMRQSVSIMEQCIH 306
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG V T+D K++ P R EMK G+ P G Y AVEAPKGE
Sbjct: 307 KLRNCPGEPVLTEDHKVAPPRRGEMKRSMEALIHHFKLYTEGFKTPEGEVYAAVEAPKGE 366
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGT+KPYR K+ APGF HL A++ + +G LAD+ AI+
Sbjct: 367 FGVYLVSDGTNKPYRVKLSAPGFRHLQAMDWMNRGHMLADVSAIL 411
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E +TY Q +PY DRLDYVS M E + LA+E+LL I+
Sbjct: 60 GELVTRVDPHIGLLHRGTEKLMEARTYLQNIPYLDRLDYVSPMNQEHAFCLAIERLLEID 119
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 120 VPYRGQLIRVLYS 132
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 19 NWNDNLVPVEKQI--RNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
++ D L P + + R INFGPQHPAAHGVL L E +TR+ HI
Sbjct: 20 DYEDGLTPHARAMDDRKFTINFGPQHPAAHGVLRLVLELDGELVTRVDPHI 70
>gi|148255912|ref|YP_001240497.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. BTAi1]
gi|218534454|sp|A5EK97.1|NUOD_BRASB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146408085|gb|ABQ36591.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. BTAi1]
Length = 398
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHA Y R
Sbjct: 101 IRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRI 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI F F +D+++ +LT NR++ QR D+G+V+ + A +GFS
Sbjct: 161 GGVHQDLPPKLIDDIDAFCDPFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPYD Y EFD+PIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYDVYAEMEFDVPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQ 280
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V D KI+ P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLRAPDGQGPVVVTDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPY+CKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 341 EFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAIL 386
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA E+LL IE
Sbjct: 34 GEVVERVDPHIGLLHRGTEKLIETKTYLQAMPYFDRLDYVAPMNQEHAFCLAAERLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 94 VPRRGQLIRVLYS 106
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLEL 32
>gi|319408582|emb|CBI82237.1| NADH dehydrogenase I, D subunit [Bartonella schoenbuchensis R1]
Length = 396
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 145/286 (50%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS+++A GFS
Sbjct: 159 GGVHRDLPESLIEDIGNFIDPFLVALGKLDALITPNRIFKQRNVDIGVVSSDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q +N
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V D KI P R+EMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTERNGPVSNLDHKIVPPKRNEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LAVEKLL IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQACPYLDRLDYVAPMNQEHAFVLAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|398829512|ref|ZP_10587710.1| NADH dehydrogenase I, D subunit [Phyllobacterium sp. YR531]
gi|398216997|gb|EJN03537.1| NADH dehydrogenase I, D subunit [Phyllobacterium sp. YR531]
Length = 396
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 194/286 (67%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GARMHAAY RP
Sbjct: 99 IRVLFSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F + ++D++T NR++ QR D+G+V+ EDA +GFS
Sbjct: 159 GGVHQDLPDQLIEDIGKWCDPFLTTVKNLDDLITPNRIFKQRNVDIGVVTLEDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y EFD+PIG +G+ +I M+EMRQS+RI+ Q +
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMEFDVPIGKNGDCYDRYLIRMEEMRQSVRIMRQCVE 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V KI P R EMK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKERVGPVSNTSAKIVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDG++KPYR K++APGFAHL A++ + +G LAD+ AI+
Sbjct: 339 EFGVFLVSDGSNKPYRVKLRAPGFAHLQAMDFLCRGHMLADVSAIL 384
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E Y+LAVE+LL IE
Sbjct: 32 GEVVARVDPHIGLLHRGTEKLMEAKTYLQAVPYLDRLDYVAPMNQEHAYALAVERLLKIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
E Q+RN INFGPQHPAAHGVL L E + R+ HI
Sbjct: 3 ETQVRNFNINFGPQHPAAHGVLRLVLELDGEVVARVDPHI 42
>gi|302383048|ref|YP_003818871.1| NADH dehydrogenase I subunit D [Brevundimonas subvibrioides ATCC
15264]
gi|302193676|gb|ADL01248.1| NADH dehydrogenase I, D subunit [Brevundimonas subvibrioides ATCC
15264]
Length = 431
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 147/288 (51%), Positives = 198/288 (68%), Gaps = 23/288 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L++EI RIL+H++ V T ALDVGA+TP W FE+REK+M FYERA GAR+HA Y
Sbjct: 132 AQLIRVLYSEIGRILSHMLNVTTQALDVGALTPPLWGFEQREKLMVFYERACGARLHANY 191
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P+ L+DDI + + F L ++E ++TENR++ QR D+GIVS E AL +
Sbjct: 192 FRPGGVHQDLPMALIDDIGRWCAEFPTALADIESLVTENRIFKQRNVDIGIVSKEQALEW 251
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGS I WDLRK QPY+ Y +FD+ +G +G+ ++ ++EM+QS+ I+EQ
Sbjct: 252 GFSGVMLRGSDIAWDLRKSQPYECYAELDFDVVVGKNGDCWDRYLVRVEEMKQSVHIMEQ 311
Query: 220 AINKM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAP 261
I+K+ PG V ++ KI P+R EMK G+ P G Y AVEAP
Sbjct: 312 CIHKLRNCPGEPVMVENNKIVPPTRGEMKRSMEALIHHFKLYTEGFHTPAGEVYAAVEAP 371
Query: 262 KGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
KGEFG+YLVSDGT+KPYR KI APGF HL A++ + +G LAD+ AI+
Sbjct: 372 KGEFGIYLVSDGTNKPYRVKISAPGFRHLQAMDWMNRGHMLADVSAIL 419
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E +TY Q +PY DRLDYV+ M E + LA+E+L+ IE
Sbjct: 68 GEVVERVDPHIGLLHRGTEKLMEARTYLQNVPYLDRLDYVAPMNQEHAFCLAIERLMGIE 127
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+++
Sbjct: 128 VPYRAQLIRVLYS 140
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 19/28 (67%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E R INFGPQHPAAHGVL L E+
Sbjct: 39 EMDDRKFTINFGPQHPAAHGVLRLVLEL 66
>gi|423715496|ref|ZP_17689720.1| NADH-quinone oxidoreductase subunit D [Bartonella elizabethae
F9251]
gi|395429623|gb|EJF95684.1| NADH-quinone oxidoreductase subunit D [Bartonella elizabethae
F9251]
Length = 396
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLVEDIGNFIDPFLVSLGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIPIG + + +I M+EMRQS +I+ Q +
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPIGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 223 KMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G E V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLGTEKNEPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL I+
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGIK 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|338739720|ref|YP_004676682.1| NADH-quinone oxidoreductase subunit D [Hyphomicrobium sp. MC1]
gi|337760283|emb|CCB66114.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
[Hyphomicrobium sp. MC1]
Length = 396
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 196/289 (67%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L++EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHA Y
Sbjct: 96 AQLIRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAKY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L+DDIY F F LD+++ +LTENR++ QR D+G+V ++A +
Sbjct: 156 FRIGGVHQDLPDQLIDDIYAFCDPFLKVLDDIDGLLTENRIFKQRNVDIGVVPLDEAFAW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMR+S ++++Q
Sbjct: 216 GFSGVMVRGSGAAWDLRKAQPYECYAELDFDIPIGKNGDCYDRYLIRMQEMRESTKLMKQ 275
Query: 220 AINKMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
+ G + K+ P R+EMK G VPPG Y AVEA
Sbjct: 276 CCELLKSASGQGPHVAQNKKVVPPKRAEMKRSMEALIHHFKLYTEGIHVPPGEVYAAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLV+DG++KPYRCKI+APGF HLAA++ I +G LAD+ AI+
Sbjct: 336 PKGEFGVYLVADGSNKPYRCKIRAPGFPHLAAMDHINRGHMLADVSAIL 384
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA+ YFDRLDYV+ M E + LA EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYMQAIGYFDRLDYVAPMNQEHSFCLAAEKLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+++
Sbjct: 92 VPRRAQLIRVLYS 104
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +IRN INFGPQHPAAHGVL L E+
Sbjct: 3 ETEIRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|357977047|ref|ZP_09141018.1| NADH dehydrogenase subunit D [Sphingomonas sp. KC8]
Length = 408
Score = 293 bits (750), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 141/281 (50%), Positives = 195/281 (69%), Gaps = 21/281 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LFAE+TRI NH++ +G+H +DVGAMTP W+FE RE + F+ERASGARMHAA+ RPGG
Sbjct: 116 VLFAELTRICNHMLNLGSHVMDVGAMTPNLWMFEIREDCLGFFERASGARMHAAWFRPGG 175
Query: 110 VALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSG 168
V D+P+ LL DI ++ T +L ++ ++ +NR++ QR D+ +VS EDA+ +GFSG
Sbjct: 176 VHQDVPLKLLTDIGDWLDTRLPKLFEDAISLVADNRIFKQRNVDIAVVSKEDAVKWGFSG 235
Query: 169 VMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINK 223
M+RGSGI WD+RK QPYD Y+ EFD+P+GT G+ ++ ++E+RQS RI++Q + +
Sbjct: 236 PMIRGSGIPWDIRKSQPYDAYDKVEFDVPVGTKGDCYDRFMVRVEEVRQSARIMKQCLQQ 295
Query: 224 MPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVY 268
MP G + + D K+ P R EMK G+ VP G Y A E+PKGEFGVY
Sbjct: 296 MPEGPIASLDRKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVY 355
Query: 269 LVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
LVSDGT+KPYRCKI+ F+HL A++ + KG LADI AI+
Sbjct: 356 LVSDGTNKPYRCKIRPTAFSHLQAMDFMAKGHMLADITAIL 396
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S + E Y LAVEKLL IE
Sbjct: 47 GEIVERADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYCSPLGMEHSYVLAVEKLLGIE 106
Query: 363 VPLRAKYIRVMFT 375
VP RA+Y+RV+F
Sbjct: 107 VPERAQYLRVLFA 119
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N INFGPQHPAAHGVL L E+
Sbjct: 20 EIQNYTINFGPQHPAAHGVLRLVLEM 45
>gi|418055568|ref|ZP_12693622.1| NAD(P)H-quinone oxidoreductase subunit H [Hyphomicrobium
denitrificans 1NES1]
gi|353209846|gb|EHB75248.1| NAD(P)H-quinone oxidoreductase subunit H [Hyphomicrobium
denitrificans 1NES1]
Length = 396
Score = 293 bits (750), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 198/289 (68%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L++EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGARMHA Y
Sbjct: 96 AQLIRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARMHAKY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L+DDIY F F +D+++ +LTENR++ QR D+G+VS +DA +
Sbjct: 156 FRIGGVHQDLPEKLIDDIYAFCDPFLKVVDDIDVLLTENRIFKQRNVDIGVVSLDDAFAW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLRK QPY+ Y + +FDIP+G +G+ +I M+EMR+S +I++Q
Sbjct: 216 GFSGVMVRGSGAAWDLRKAQPYECYADLDFDIPVGKNGDCYDRYLIRMQEMRESTKIMKQ 275
Query: 220 AINKMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
+ G ++ K+ P R EMK G+ VP G Y AVEA
Sbjct: 276 CCELLKSASGQGPHVVENKKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGDVYAAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLV+DG++KPYRCKI+APGF HLAA++ + +G LAD+ AI+
Sbjct: 336 PKGEFGVYLVADGSNKPYRCKIRAPGFPHLAAMDFMNRGHMLADVSAIL 384
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA+ YFDRLDYV+ M E + LA E+LL I
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYMQAIGYFDRLDYVAPMNQEHAFCLAAERLLGIS 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+++
Sbjct: 92 VPRRAQLIRVLYS 104
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +IRN INFGPQHPAAHGVL L E+
Sbjct: 3 ETEIRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|197105265|ref|YP_002130642.1| NADH dehydrogenase subunit D [Phenylobacterium zucineum HLK1]
gi|218534443|sp|B4RCM6.1|NUOD_PHEZH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|196478685|gb|ACG78213.1| NADH dehydrogenase I, D subunit [Phenylobacterium zucineum HLK1]
Length = 411
Score = 293 bits (750), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 202/310 (65%), Gaps = 34/310 (10%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWL 81
+ L+ VE +R ++I L+ EI RILNH++ V T A+DVGA+TP W
Sbjct: 102 EKLLGVEVPVRGLLIR------------TLYDEIGRILNHLLNVTTQAMDVGALTPPLWG 149
Query: 82 FEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLT 141
FEEREK+M FYERASGAR+HA Y R GGV D+P L+ DI + F LD++E ++T
Sbjct: 150 FEEREKLMIFYERASGARLHANYYRVGGVRQDLPPELVQDISDWCDAFPKILDDIEGLIT 209
Query: 142 ENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTH 201
+NR++ QR D+G+V+ E+A+ +GFSGVM+RGSGI WDLR+ QPY Y EFDIP+G +
Sbjct: 210 DNRIFKQRNVDIGVVTKEEAIAWGFSGVMVRGSGIPWDLRRSQPYALYSEMEFDIPLGVN 269
Query: 202 GN-----VIGMKEMRQSLRIVEQAINKM--PGGEVRTDDMKISTPSRSEMK--------- 245
G+ + M+EMR+S +I++Q ++ G V DD K+S P R EMK
Sbjct: 270 GDCYDRYLCRMQEMRESTKIMKQCCERLLKTSGPVLVDDHKVSPPRRGEMKRSMEALIHH 329
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
GY PPG Y VEAPKGEFGVYLVS+GT+KPYRCKI+APG+ HL A++ + +G
Sbjct: 330 FKLYTEGYRTPPGDVYACVEAPKGEFGVYLVSNGTNKPYRCKIRAPGYPHLQAMDWMNRG 389
Query: 300 SFLADIVAII 309
LAD+ AI+
Sbjct: 390 HMLADVSAIL 399
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 54/72 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E + Y Q +PYFDRLDYV+ M E Y LA+EKLL +E
Sbjct: 49 GEVVERVDPHIGLLHRGTEKLMEARPYAQTIPYFDRLDYVAPMNQEHAYCLAIEKLLGVE 108
Query: 363 VPLRAKYIRVMF 374
VP+R IR ++
Sbjct: 109 VPVRGLLIRTLY 120
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E ++R INFGPQHPAAHGVL L E+
Sbjct: 20 ETKVRKFNINFGPQHPAAHGVLRLVLEL 47
>gi|349575442|ref|ZP_08887359.1| NADH-quinone oxidoreductase subunit D [Neisseria shayeganii 871]
gi|348013021|gb|EGY51948.1| NADH-quinone oxidoreductase subunit D [Neisseria shayeganii 871]
Length = 418
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 200/312 (64%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HALD+GAMT F + F ERE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHALDIGAMTVFLYAFREREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F + +DE E++
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKKLNESREGTMLDFIEAFTERFPSCVDEYENL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E AL GF+GVMLRGSGI+WD+RK PYD Y N +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERALQKGFTGVMLRGSGIEWDIRKKAPYDAYANVDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + + EMR+S RI++Q + K G V D+ K++ P R+EMK
Sbjct: 275 VNGDCYDRYLCRINEMRESNRIIKQCVQWLKANPGPVIVDNHKVAPPKRTEMKMGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFG+Y++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGIYMISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
+G LAD+VAII
Sbjct: 395 RGHMLADVVAII 406
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E +TY QALPY DRLDYVSMM NEQ Y LAVEKL IEVP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETRTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLTGIEVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|146341112|ref|YP_001206160.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. ORS 278]
gi|218534455|sp|A4YVK9.1|NUOD_BRASO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146193918|emb|CAL77935.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 278]
Length = 398
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHA Y R
Sbjct: 101 IRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRI 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI F F +D+++ +LT NR++ QR D+G+V+ + A +GFS
Sbjct: 161 GGVHQDLPPKLVDDIDAFCDPFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPYD Y EFDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYDVYAEMEFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIA 280
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V D KI+ P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLRAPDGQGPVLITDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPY+CKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 341 EFGVYLVADGTNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAIL 386
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA E+LL IE
Sbjct: 34 GEVVERVDPHIGLLHRGTEKLIETKTYLQAMPYFDRLDYVAPMNQEHAFCLAAERLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 94 VPRRGQLIRVLYS 106
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLEL 32
>gi|395786216|ref|ZP_10465943.1| NADH-quinone oxidoreductase subunit D [Bartonella tamiae Th239]
gi|423716891|ref|ZP_17691081.1| NADH-quinone oxidoreductase subunit D [Bartonella tamiae Th307]
gi|395422514|gb|EJF88710.1| NADH-quinone oxidoreductase subunit D [Bartonella tamiae Th239]
gi|395428965|gb|EJF95040.1| NADH-quinone oxidoreductase subunit D [Bartonella tamiae Th307]
Length = 396
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/286 (51%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI FI F L ++ ++T NR++ QR D+G+V+A++A GFS
Sbjct: 159 GGVHQDLPEKLVQDIGDFIDPFLVALSNLDALVTPNRIFKQRNADIGVVTAKEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y +FDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYAEMDFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ GGE V + D KI+ P RSEMK G+ P G Y AVEAPKG
Sbjct: 279 RLLGGEKTGPVSSLDHKITPPKRSEMKNSMESLIHHFKLYTEGFHTPEGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLSRGHMLADATAIL 384
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQATPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVIEL 30
>gi|99080585|ref|YP_612739.1| NADH dehydrogenase subunit D [Ruegeria sp. TM1040]
gi|123252495|sp|Q1GIN9.1|NUOD_SILST RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|99036865|gb|ABF63477.1| NADH dehydrogenase I D subunit [Ruegeria sp. TM1040]
Length = 403
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/287 (51%), Positives = 199/287 (69%), Gaps = 23/287 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L++EI RILNH++ + T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY
Sbjct: 106 AQLIRVLYSEIGRILNHLLNITTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHAAY 165
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P LLDDI + F +D+++ +LTENR++ QR D+G+V+ +D Y
Sbjct: 166 FRPGGVHQDLPDELLDDIDLWAMEFPKVMDDIDGLLTENRIFKQRNCDIGVVTEDDIQKY 225
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ ++ M+EMRQSL I+ Q
Sbjct: 226 GFSGVMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQ 285
Query: 220 AINKM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
AI K+ G+V K++ P R +MK G+ VP G Y AVEAPK
Sbjct: 286 AIAKLREATGDVLARG-KLTPPKRGDMKTSMESLIHHFKLYTEGFHVPEGEVYAAVEAPK 344
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLV+DG++KPYR K++APGF HL A++ + KG LAD+ AII
Sbjct: 345 GEFGVYLVADGSNKPYRAKLRAPGFLHLQAMDYVAKGHQLADVAAII 391
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 42 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 101
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+++
Sbjct: 102 VPRRAQLIRVLYS 114
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ E++IRN INFGPQHPAAHGVL L E+
Sbjct: 7 DDAQTGEQKIRNFNINFGPQHPAAHGVLRLVLEL 40
>gi|27380027|ref|NP_771556.1| NADH dehydrogenase subunit D [Bradyrhizobium japonicum USDA 110]
gi|81736773|sp|Q89KI9.1|NUOD_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|27353181|dbj|BAC50181.1| NADH ubiquinone oxidoreductase chain D [Bradyrhizobium japonicum
USDA 110]
Length = 398
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 101 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRV 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D+++ +LT NR++ QR D+G+V ++A +GFS
Sbjct: 161 GGVHQDLPQKLVDDIEAWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI+ Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMRQCIQ 280
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V +D K++ P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLNAPEGKGPVVVEDNKVAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 341 EFGVYLVADGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAIL 386
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IVA +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL IE
Sbjct: 34 GEIVARVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 94 VPRRGQLIRVLYC 106
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+ +RN INFGPQHPAAHGVL L E + R+ HI
Sbjct: 6 ENLRNFTINFGPQHPAAHGVLRLVLELDGEIVARVDPHI 44
>gi|75676076|ref|YP_318497.1| NADH dehydrogenase subunit D [Nitrobacter winogradskyi Nb-255]
gi|123613266|sp|Q3SRE6.1|NUOD_NITWN RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|74420946|gb|ABA05145.1| NADH dehydrogenase subunit D [Nitrobacter winogradskyi Nb-255]
Length = 402
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY R
Sbjct: 105 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMMFYERASGSRMHAAYFRI 164
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F + +++ +LT NR++ QR D+G+V+ E A +GFS
Sbjct: 165 GGVHQDLPPRLIDDIEAWCDPFLQVVADLDRLLTANRIFKQRNVDIGVVTLEQAWEWGFS 224
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 225 GVMVRGSGAAWDLRKAQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIA 284
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V +D KI P R EMK G+ VP G Y AVEAPKG
Sbjct: 285 KLRAPDGQGPVAVEDNKIFPPRRGEMKRSMEALIHHFKLYTEGFHVPAGEIYAAVEAPKG 344
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 345 EFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAIL 390
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA E+LL I
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAERLLGIA 97
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 98 VPRRGQLIRVLYC 110
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 21 NDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ L V +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEALGTVTPGMRNFTINFGPQHPAAHGVLRLVLEL 36
>gi|365879274|ref|ZP_09418706.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 375]
gi|365292799|emb|CCD91237.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. ORS 375]
Length = 398
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHA Y R
Sbjct: 101 IRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRI 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI F F +D+++ +LT NR++ QR D+G+V+ + A +GFS
Sbjct: 161 GGVHQDLPTKLIDDIDAFCDPFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPYD Y +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYDVYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIA 280
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V D KI+ P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLRAPDGQGPVLITDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPY+CKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 341 EFGVYLVADGTNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAIL 386
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA E+LL IE
Sbjct: 34 GEVVERVDPHIGLLHRGTEKLIETKTYLQAMPYFDRLDYVAPMNQEHAFCLAAERLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 94 VPRRGQLIRVLYS 106
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLEL 32
>gi|427411291|ref|ZP_18901493.1| NADH-quinone oxidoreductase subunit D [Sphingobium yanoikuyae ATCC
51230]
gi|425710476|gb|EKU73498.1| NADH-quinone oxidoreductase subunit D [Sphingobium yanoikuyae ATCC
51230]
Length = 411
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 143/286 (50%), Positives = 196/286 (68%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + + FAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+AY
Sbjct: 114 AQYLRVFFAELTRICNHMLNLGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAY 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ T RL ++ ++ +NR++ QR D+ IVS EDAL
Sbjct: 174 FRPGGVHQDVPLKLLTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDISIVSKEDALK 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG MLRGSGI WD+RK QPYD Y+ EFD+P+GT + ++ ++E+RQS RI++
Sbjct: 234 WGFSGPMLRGSGIAWDIRKAQPYDVYDRMEFDVPVGTAFDCYDRFMVRVEEVRQSARIMK 293
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q +++MP G + + D K+S P R EMK G+ VP G Y A E+PKG
Sbjct: 294 QCLSEMPEGPIASFDRKVSPPKRGEMKKSMEALIHHFKLYTEGFHVPAGEVYVATESPKG 353
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+ F+HL A++ + KG LAD A++
Sbjct: 354 EFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVL 399
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKLIE+KTY QALPYFDRLDY S + E Y LAVEKLLN+E
Sbjct: 50 GEIVERCDPHVGLLHRGTEKLIEHKTYMQALPYFDRLDYCSPLGMEHSYVLAVEKLLNLE 109
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV F
Sbjct: 110 VPLRAQYLRVFFA 122
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +I+N INFGPQHPAAHGVL L E+
Sbjct: 21 DTEIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|389691121|ref|ZP_10180014.1| NADH dehydrogenase I, D subunit [Microvirga sp. WSM3557]
gi|388589364|gb|EIM29653.1| NADH dehydrogenase I, D subunit [Microvirga sp. WSM3557]
Length = 396
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 197/289 (68%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYER SG+RMHA Y
Sbjct: 96 AQLIRVLFSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERISGSRMHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV +DI L+DDI F F LD+++ ++ NR++ QR D+G+++ +D +
Sbjct: 156 FRPGGVNMDIQPELIDDIEAFCDPFLQVLDDLDTLVIGNRIFKQRNVDIGVLTLDDCFRW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG ++R G+ WDLRK QPY+ YE EFDIP+G +G+ VI M+EMRQS+RI+ Q
Sbjct: 216 GFSGSIIRSCGVAWDLRKAQPYECYEEMEFDIPVGKNGDNYDRQVIRMEEMRQSVRIMRQ 275
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
+ K+ P G+ V T D K++ PSR +MK G+ VP G Y AVEA
Sbjct: 276 CLTKLRAPDGQGPVATLDGKVAPPSRKDMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDGT+KPYRCKI+APGFAHL ++ + +G LAD+ I+
Sbjct: 336 PKGEFGVYLVSDGTNKPYRCKIRAPGFAHLQGMDFMCRGHMLADVAGIL 384
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIEYKTY QA PYFDRLDYV+ M E + LA EKLL IE
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEYKTYVQANPYFDRLDYVAPMNQEHAFCLATEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+F+
Sbjct: 92 VPRRAQLIRVLFS 104
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 3 EHNIRNFTINFGPQHPAAHGVLRLVLEL 30
>gi|319782984|ref|YP_004142460.1| NADH dehydrogenase I subunit D [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168872|gb|ADV12410.1| NADH dehydrogenase I, D subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 396
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RI++HI+ V T A+DVGA+TP W F EREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYSEIGRIMSHILNVTTQAMDVGALTPPLWGFVEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F +D+++ +LT NR++ QR D+GIVS DA +GFS
Sbjct: 159 GGVHQDLPRQLVEDIGKWIDPFLKSIDDLDRLLTGNRIFKQRNVDIGIVSLADAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ ++ M+EMRQS +I+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMDFDIPIGKNGDCFDRYLVRMEEMRQSAKIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D K+ P R MK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKESTGPVSNLDGKVVPPKRQAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCK++APGFAHL A++ + +G LADI A++
Sbjct: 339 EFGVYLVSDGSNKPYRCKLRAPGFAHLQAMDFLCRGHMLADITAVL 384
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PY DRLDY + M E ++LA E+LL IE
Sbjct: 32 GEVVDRVDPHIGLLHRGTEKLIEAKTYLQAVPYLDRLDYCAPMNQEHAFALAAERLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQVIRVLYS 104
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETSVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|365890994|ref|ZP_09429470.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. STM 3809]
gi|365333110|emb|CCE02001.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Bradyrhizobium sp. STM 3809]
Length = 398
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 150/286 (52%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHA Y R
Sbjct: 101 IRVLYSEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRI 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI F F +D+++ +LT NR++ QR D+G+V+ + A +GFS
Sbjct: 161 GGVHQDLPPKLVDDIDAFCDPFLKVVDDLDQLLTGNRIFKQRNVDIGVVTLKQAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPYD Y EFD+PIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYDVYAEMEFDVPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIA 280
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V D KI+ P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLRAPDGQGPVLVTDNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEIYAAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPY+CKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 341 EFGVYLVADGTNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAIL 386
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA E+LL IE
Sbjct: 34 GEVVERVDPHIGLLHRGTEKLIETKTYLQAMPYFDRLDYVAPMNQEHAFCLAAERLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 94 VPRRGQLIRVLYS 106
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLEL 32
>gi|241518508|ref|YP_002979136.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|424879122|ref|ZP_18302757.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WU95]
gi|240862921|gb|ACS60585.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|392519793|gb|EIW44524.1| NADH dehydrogenase I, D subunit [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 396
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 199/289 (68%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+AEI+RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY
Sbjct: 96 AQLIRVLYAEISRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L+ DI + F ++++ +LT+NR++ QR DVG++S EDA +
Sbjct: 156 FRPGGVHQDLPPKLVADIGEWCRKFPQVIEDIGGLLTDNRIFKQRNVDVGLISLEDAWAW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGV++RGSG WDLR+ PY+ Y + EFDIPIG +G+ +I M+EMR+S+RI+ Q
Sbjct: 216 GFSGVLIRGSGAAWDLRRANPYECYSDLEFDIPIGKNGDCYDRYLIRMQEMRESVRIMSQ 275
Query: 220 AINKMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
+ + G G V ++D K+ P R EMK G+ VP G Y AVEA
Sbjct: 276 CADLLLGSASTGPVNSNDGKVVPPKRGEMKRSMEALIHHFKLYTEGFRVPKGEAYAAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLV+DGT+ PYRCKI+APGF HL A++ + +G LAD+ A++
Sbjct: 336 PKGEFGVYLVADGTNAPYRCKIRAPGFTHLQAMDFMCRGHQLADVSAVL 384
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV IDPHIGLLHRGTEKLIE KTY QALPYFDRLDYV+ M E Y LA+EK+L +E
Sbjct: 32 GEIVERIDPHIGLLHRGTEKLIEKKTYLQALPYFDRLDYVAPMSQEHAYCLAIEKMLGLE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 92 VPYRAQLIRVLYA 104
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT-----RILNHI 62
E +RN +NFGPQHPAAHGVL L E+ RI HI
Sbjct: 2 AEHDVRNFHLNFGPQHPAAHGVLRLVLELNGEIVERIDPHI 42
>gi|87200314|ref|YP_497571.1| NADH dehydrogenase subunit D [Novosphingobium aromaticivorans DSM
12444]
gi|123488914|sp|Q2G5Y6.1|NUOD_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|87135995|gb|ABD26737.1| NADH dehydrogenase subunit D [Novosphingobium aromaticivorans DSM
12444]
Length = 403
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/281 (50%), Positives = 191/281 (67%), Gaps = 21/281 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LFAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+A+ RPGG
Sbjct: 111 VLFAELTRICNHMLNLGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAWFRPGG 170
Query: 110 VALDIPIGLLDDIYHFIST-FSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSG 168
V D+P+ LL D+ +I D+ ++ +NR++ QR D+ +VS EDAL +GFSG
Sbjct: 171 VHQDVPLKLLTDMADWIDERLHPLFDDAMSLVVDNRIFKQRNVDIAVVSKEDALRWGFSG 230
Query: 169 VMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINK 223
M+RGSGI WDLRK QPYD Y+ EFDIP+GT G+ ++ ++E+RQS RI++Q I +
Sbjct: 231 PMIRGSGIPWDLRKSQPYDVYDRMEFDIPVGTSGDCYDRFMVRVEEVRQSARIMKQCIEQ 290
Query: 224 MPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVY 268
MP G V + D K+ P R+EMK G+ VP G Y A E+PKGEFGVY
Sbjct: 291 MPDGPVASTDRKVVPPKRAEMKQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVY 350
Query: 269 LVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
LVSDG++KPYRCKI+ F+HL A++ + KG L D AI+
Sbjct: 351 LVSDGSNKPYRCKIRPTAFSHLQAMDFMCKGHMLPDATAIL 391
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ IDPH+GLLHRGTEKLIE+KTY QALPYFDRLDY S + E Y LAVEKLLNIE
Sbjct: 42 GEIIERIDPHVGLLHRGTEKLIEHKTYLQALPYFDRLDYCSPLGMEHSYVLAVEKLLNIE 101
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 102 VPLRAQYLRVLFA 114
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
++ I N INFGPQHPAAHGVL + E I RI H+
Sbjct: 13 DEVITNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHV 52
>gi|254461816|ref|ZP_05075232.1| NADH dehydrogenase (quinone), D subunit [Rhodobacterales bacterium
HTCC2083]
gi|206678405|gb|EDZ42892.1| NADH dehydrogenase (quinone), D subunit [Rhodobacteraceae bacterium
HTCC2083]
Length = 407
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/285 (51%), Positives = 196/285 (68%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNH++ V T ALDVGA+TP W FE+RE++M FYERA GAR+HAAY RP
Sbjct: 113 IRVLYSEIGRVLNHLLNVTTQALDVGALTPPLWGFEQREQLMIFYERACGARLHAAYFRP 172
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + F +D++ +LTENR++ QR D+G+V+ ED LNYGFS
Sbjct: 173 GGVHQDLPDALLDDIEAWSHEFPKFMDDMHGLLTENRIFKQRNADIGVVTEEDILNYGFS 232
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y+ FEF IP+G +G+ + M+EM QS+ I++QAI
Sbjct: 233 GVMVRGSGFAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLCRMEEMTQSVSIIKQAIA 292
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG + K++ P R +MK G+ VP G Y AVEAPKGE
Sbjct: 293 KLREEPGDVMARG--KLTPPKRGDMKTSMEALIHHFKLYTEGFHVPAGEVYCAVEAPKGE 350
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG++KPYR KI+APGF HL A++ I G LAD+ AII
Sbjct: 351 FGVYLVADGSNKPYRSKIRAPGFLHLQAMDHITVGHQLADVAAII 395
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 46 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLCGVE 105
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 106 VPRRASLIRVLYS 118
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
Query: 20 WNDNLVPV---EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++DN V E++IRN INFGPQHPAAHGVL L E+
Sbjct: 6 FDDNSVDALSGEQKIRNFNINFGPQHPAAHGVLRLVLEL 44
>gi|398822694|ref|ZP_10581071.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. YR681]
gi|398226644|gb|EJN12889.1| NADH dehydrogenase I, D subunit [Bradyrhizobium sp. YR681]
Length = 398
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 101 IRVLYCEIGRILSHMLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRV 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +++++ +LT NR++ QR D+G+V ++A +GFS
Sbjct: 161 GGVHQDLPQKLVDDIEAWCDPFLKVVEDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSIRIMKQCIQ 280
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V +D K++ P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLNAPDGKGPVVVEDNKVAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 341 EFGVYLISDGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAIL 386
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL IE
Sbjct: 34 GEVVARVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 94 VPRRGQLIRVLYC 106
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+Q+RN INFGPQHPAAHGVL L E + R+ HI
Sbjct: 6 EQLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHI 44
>gi|386828043|ref|ZP_10115150.1| NADH dehydrogenase I, D subunit [Beggiatoa alba B18LD]
gi|386428927|gb|EIJ42755.1| NADH dehydrogenase I, D subunit [Beggiatoa alba B18LD]
Length = 417
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/310 (50%), Positives = 200/310 (64%), Gaps = 49/310 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++F EITRILNH+M +G HALD+GAMT F + F ERE +M+ YE SGARMHAAY RP
Sbjct: 97 IRVMFDEITRILNHLMWLGAHALDIGAMTVFLYAFREREDLMDCYEAVSGARMHAAYYRP 156
Query: 108 GGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P LLD I F F A +DE E +LTE
Sbjct: 157 GGVYRDLPDVMAPYEVSKWHNPKEVDRLNAHRRGSLLDFIEAFTERFPAYVDEYETLLTE 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QRT +G+V+ E AL GFSGV+LRGSGI+WDLRK QPY+ Y+ +FDIP+G +G
Sbjct: 217 NRIWKQRTVGIGVVTPERALQLGFSGVLLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK--------- 245
+ ++ ++EMRQS I++Q I+ K P G V DD K+++P R MK
Sbjct: 277 DCYDRYLVRIEEMRQSNHIIKQCIDWLRKNP-GPVMVDDNKVTSPRRETMKGDMESLIHH 335
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
GY VP G Y+AVE PKGEFG+YLVSDG++KPYR KI+APGF HLAA++++ KG
Sbjct: 336 FKLFTEGYSVPAGEVYSAVEHPKGEFGIYLVSDGSNKPYRLKIRAPGFPHLAAMDELSKG 395
Query: 300 SFLADIVAII 309
LAD+VAII
Sbjct: 396 HMLADVVAII 405
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E K + Q++PY DRLDYVSMMCNE Y +A+E++L IE
Sbjct: 30 GEVIERADPHIGLLHRATEKLAENKPFNQSVPYMDRLDYVSMMCNEHAYVMAIERMLGIE 89
Query: 363 VPLRAKYIRVMF 374
P+RAKYIRVMF
Sbjct: 90 PPIRAKYIRVMF 101
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|89053664|ref|YP_509115.1| NADH dehydrogenase subunit D [Jannaschia sp. CCS1]
gi|122499241|sp|Q28T72.1|NUOD_JANSC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|88863213|gb|ABD54090.1| NADH dehydrogenase subunit D [Jannaschia sp. CCS1]
Length = 412
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/287 (51%), Positives = 198/287 (68%), Gaps = 23/287 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RILNH++ V T ALDVGA+TP W FEEREK+M FYERASGAR+HAAY
Sbjct: 115 AQLIRVLYCEIGRILNHLLNVTTQALDVGALTPPLWGFEEREKLMIFYERASGARLHAAY 174
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L++DI + F LD+++ +L+ENR++ QR D+G+V+ ED N+
Sbjct: 175 FRPGGVHQDLPPELIEDIDTWAHEFPQMLDDIDGLLSENRIFKQRNVDIGVVTEEDIQNW 234
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLR+ QPY+ Y+ FEF IP+G +G+ + M EMR+S +I+ Q
Sbjct: 235 GFSGVMVRGSGFAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLCRMAEMRESTKIIHQ 294
Query: 220 AINKMPG--GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
A K+ GE+ + K+S PSR +MK G+ VP G Y VEAPK
Sbjct: 295 ACEKLRNEPGEIMSRG-KMSPPSRGDMKTSMEALIHHFKLYTEGFHVPEGEIYACVEAPK 353
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGV+LV+DGT+KPYR K++APGFAHL A++ + KG LAD+ A++
Sbjct: 354 GEFGVFLVADGTNKPYRAKLRAPGFAHLQAMDYLCKGHQLADVSAVL 400
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV M E + LA+E++ +
Sbjct: 51 GEICERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVGTMNQEHAWCLAIERMTGTD 110
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 111 VPRRAQLIRVLYC 123
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN +NFGPQHPAAHGVL L E+
Sbjct: 22 EQKIRNFNLNFGPQHPAAHGVLRLVLEL 49
>gi|418937591|ref|ZP_13491211.1| NAD(P)H-quinone oxidoreductase subunit H [Rhizobium sp. PDO1-076]
gi|375055699|gb|EHS51939.1| NAD(P)H-quinone oxidoreductase subunit H [Rhizobium sp. PDO1-076]
Length = 396
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 200/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GARMH+AY+RP
Sbjct: 99 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARMHSAYIRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F +D+++D+LT NR++ QR D+G+V+ +D +GFS
Sbjct: 159 GGVHQDLPHELVEDIGKWCDPFLKTVDDIDDLLTGNRIFKQRNVDIGVVTLDDCWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y + +FD+ +G +G+ +I M EMR+S++I++Q +N
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYADLDFDLMVGKNGDCYDRYLIRMFEMRESVKIMKQCVN 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLLGDARTGPISALDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPEGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+APG+AHL A++ I +G LAD+ AI+
Sbjct: 339 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAMDFICRGHQLADVSAIL 384
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QALPYFDRLDYV+ M E YS+AVEKLL ++
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQALPYFDRLDYVAPMNQEHAYSMAVEKLLGLQ 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPIRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHNVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|225024122|ref|ZP_03713314.1| hypothetical protein EIKCOROL_00990 [Eikenella corrodens ATCC
23834]
gi|224943147|gb|EEG24356.1| hypothetical protein EIKCOROL_00990 [Eikenella corrodens ATCC
23834]
Length = 418
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/306 (48%), Positives = 199/306 (65%), Gaps = 47/306 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNH+M +G+HALD+GAMT + F +RE++M+ YE SGARMHAAY RPGGV
Sbjct: 101 MFAEVTRILNHLMGIGSHALDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYYRPGGV 160
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P +LD I F F R+D +E +LT+NR+
Sbjct: 161 YRDLPDFMPKYEASKFRNAKVLKELNEAREGTMLDFIEAFCKRFPGRIDTLETLLTDNRI 220
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VS E AL GF+GVMLRGSGI+WD+RK +PY+ Y+ +FDIP+G +G+
Sbjct: 221 WKQRTVGIGVVSPERALQKGFTGVMLRGSGIEWDVRKKEPYEVYDKMDFDIPVGVNGDCY 280
Query: 204 ---VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------------- 245
+ + EMRQS+RI++Q ++ ++ G V DD K++ P R+EMK
Sbjct: 281 DRYLCRINEMRQSVRIIQQCVDWLRVNPGPVIVDDHKVAPPKRTEMKTGMEDLIHHFKLF 340
Query: 246 --GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLA 303
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++ KG LA
Sbjct: 341 TEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLA 400
Query: 304 DIVAII 309
D+VAII
Sbjct: 401 DVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E +TY QALPY DRLDYVSMM NEQ Y LA+EKLL I++P+RAKY
Sbjct: 38 DPHIGLLHRGTEKLAETRTYLQALPYMDRLDYVSMMVNEQAYCLAIEKLLGIDIPIRAKY 97
Query: 370 IRVMFT 375
IR MF
Sbjct: 98 IRTMFA 103
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|395778247|ref|ZP_10458759.1| NADH-quinone oxidoreductase subunit D [Bartonella elizabethae
Re6043vi]
gi|395417455|gb|EJF83792.1| NADH-quinone oxidoreductase subunit D [Bartonella elizabethae
Re6043vi]
Length = 396
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 146/286 (51%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLVEDIGNFIDPFLVSLGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIPIG + + +I M+EMRQS +I+ Q +
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPIGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 223 KMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G E V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLGTEKNEPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGSNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL+I+
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLDIK 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|383771513|ref|YP_005450578.1| NADP ubiquinone oxidoreductase chain D [Bradyrhizobium sp. S23321]
gi|381359636|dbj|BAL76466.1| NADP ubiquinone oxidoreductase chain D [Bradyrhizobium sp. S23321]
Length = 398
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 101 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRV 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D+++ +LT NR++ QR D+G+V ++A +GFS
Sbjct: 161 GGVHQDLPQKLVDDIEAWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVPLKEAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQ 280
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V +D K++ P R +MK G VP G Y AVEAPKG
Sbjct: 281 KLNAPDGKGPVVVEDNKVAPPRRGDMKRSMEALIHHFKLYTEGVHVPAGEVYAAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 341 EFGVYLVADGTNKPYKCKIRAPGFAHLQAMDHICRGHLLADVSAIL 386
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL IE
Sbjct: 34 GEVVARVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 94 VPRRGQLIRVLYC 106
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+Q+RN INFGPQHPAAHGVL L E + R+ HI
Sbjct: 6 EQLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHI 44
>gi|340027663|ref|ZP_08663726.1| NADH dehydrogenase subunit D [Paracoccus sp. TRP]
Length = 412
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 143/285 (50%), Positives = 202/285 (70%), Gaps = 24/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH+M + T A+DVGA+TP W FE RE++M FYERA GAR+HAAY RP
Sbjct: 117 IRVLYSEIGRILNHLMGITTGAMDVGALTPPLWGFEAREELMVFYERACGARLHAAYFRP 176
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + F +D+++ +LTENR++ QR D+GIV+ EDALN+G++
Sbjct: 177 GGVHQDLPPDLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDIGIVTEEDALNWGYT 236
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M EMR+S +I++QA+
Sbjct: 237 GVMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLCRMAEMRESCKIMKQAVQ 296
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ P G+V K++ P R++MK G+ VP G Y +VEAPKGE
Sbjct: 297 KLRAEPVGDVLARG-KLTPPKRADMKRDMEALIHHFKLYTEGFRVPAGEVYASVEAPKGE 355
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KP+R K++APGFAHL +++ + +G LAD+ AII
Sbjct: 356 FGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMARGHMLADVPAII 400
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+E +TY Q LPY DRLDYV+ M E + LA+E+L
Sbjct: 50 GEVVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLTGTA 109
Query: 363 VPLRAKYIRVMFT 375
+P RA IRV+++
Sbjct: 110 IPRRASLIRVLYS 122
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+ IRN INFGPQHPAAHGVL + E+
Sbjct: 21 EQSIRNFNINFGPQHPAAHGVLRMVLEL 48
>gi|84502608|ref|ZP_01000727.1| NADH dehydrogenase I, D subunit [Oceanicola batsensis HTCC2597]
gi|84389003|gb|EAQ01801.1| NADH dehydrogenase I, D subunit [Oceanicola batsensis HTCC2597]
Length = 407
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 146/285 (51%), Positives = 195/285 (68%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNH+M V T A+DVGA+TP W FE RE++M FYERA GAR+HAAY RP
Sbjct: 111 IRVLYSEIGRVLNHLMNVTTQAMDVGALTPPLWGFEHREELMIFYERACGARLHAAYFRP 170
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + F LD++ ++LTENR++ QR D+GIV+ +D YGFS
Sbjct: 171 GGVHQDLPPKLLDDIEEWSERFGGFLDDLNNLLTENRIFKQRNVDIGIVTEDDIQRYGFS 230
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + ++EMRQS I+ Q +
Sbjct: 231 GVMVRGSGLAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLCRVEEMRQSTSIILQCLE 290
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ E + D + KI+ P R EMK G+ VP G Y AVEAPKGE
Sbjct: 291 KLRAPEGQGDILSRGKITPPKRIEMKTSMEALIHHFKLYTEGFRVPEGQVYAAVEAPKGE 350
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGT++PYR K++APG+ HLAA++ I G LAD+ AII
Sbjct: 351 FGVYLVSDGTNRPYRAKLRAPGYPHLAAMDHIATGHQLADVAAII 395
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 53/73 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKL+E +TY Q LPY DRLDYV+ M E + LA+EKL +
Sbjct: 44 GEIVERCDPHVGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIEKLTGVV 103
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 104 VPRRASLIRVLYS 116
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN +NFGPQHPAAHGVL L E+
Sbjct: 15 EQKIRNFNLNFGPQHPAAHGVLRLVLEL 42
>gi|398386450|ref|ZP_10544451.1| NADH dehydrogenase I, D subunit [Sphingobium sp. AP49]
gi|397718233|gb|EJK78825.1| NADH dehydrogenase I, D subunit [Sphingobium sp. AP49]
Length = 411
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 142/286 (49%), Positives = 196/286 (68%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + + FAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+AY
Sbjct: 114 AQYLRVFFAELTRICNHMLNLGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAY 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ T RL ++ ++ +NR++ QR D+ IVS EDAL
Sbjct: 174 FRPGGVHQDVPLKLLTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDISIVSKEDALK 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG MLRGSGI WD+RK QPYD Y+ +FD+P+GT + ++ ++E+RQS RI++
Sbjct: 234 WGFSGPMLRGSGIAWDIRKAQPYDVYDRMDFDVPVGTAYDCYDRFMVRVEEVRQSARIMK 293
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q +++MP G + + D K+S P R EMK G+ VP G Y A E+PKG
Sbjct: 294 QCLSEMPEGPIASFDRKVSPPKRGEMKRDMEALIHHFKLYTEGFHVPAGEVYVATESPKG 353
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+ F+HL A++ + KG LAD A++
Sbjct: 354 EFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVL 399
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S + E Y LAVEKLLN+E
Sbjct: 50 GEIVERCDPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYCSPLGMEHSYVLAVEKLLNLE 109
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV F
Sbjct: 110 VPLRAQYLRVFFA 122
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +I+N INFGPQHPAAHGVL L E+
Sbjct: 21 DTEIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|350570511|ref|ZP_08938864.1| NADH-quinone oxidoreductase subunit D [Neisseria wadsworthii 9715]
gi|349796136|gb|EGZ49926.1| NADH-quinone oxidoreductase subunit D [Neisseria wadsworthii 9715]
Length = 418
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 199/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HALD+GAMT F + F ERE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHALDIGAMTVFLYAFREREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F + +DE E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKKLNESREGTMLDFIEAFTDRFPSCVDEYESL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E AL GF+GVMLRGSG++WD+RK PYD Y N +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERALQKGFTGVMLRGSGVEWDIRKKAPYDAYANVDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + + EMR+S RI++Q + K G V D+ K++ P R+EMK
Sbjct: 275 VNGDCYDRYLCRINEMRESNRIIKQCVQWLKANPGPVIVDNHKVAPPKRTEMKMGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFG+Y++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGIYMISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
+G LAD+VAII
Sbjct: 395 RGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E +TY QALPY DRLDYVSMM NEQ Y LAVEKL +EVP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETRTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLTGVEVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|119384979|ref|YP_916035.1| NADH dehydrogenase subunit D [Paracoccus denitrificans PD1222]
gi|218527938|sp|A1B495.1|NUOD_PARDP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I, subunit 4; AltName: Full=NADH
dehydrogenase I, subunit D; AltName: Full=NADH-quinone
oxidoreductase subunit 4; Short=NQO4; AltName:
Full=NDH-1, subunit 4; AltName: Full=NDH-1, subunit D
gi|119374746|gb|ABL70339.1| NADH dehydrogenase subunit D [Paracoccus denitrificans PD1222]
Length = 412
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/285 (50%), Positives = 201/285 (70%), Gaps = 24/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH+M V T A+DVGA+TP W FE RE++M FYERA GAR+HAAY RP
Sbjct: 117 IRVLYSEIGRILNHLMGVTTGAMDVGALTPPLWGFEAREELMIFYERACGARLHAAYFRP 176
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + F +D+++ +LTENR++ QR D+GIV+ DAL++G++
Sbjct: 177 GGVHQDLPPDLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDIGIVTEADALDWGYT 236
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M EMR+S +I++QA+
Sbjct: 237 GVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQ 296
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ P G+V K++ P R+EMK G+ VP G Y AVEAPKGE
Sbjct: 297 KLRAEPAGDVLARG-KLTPPRRAEMKRDMESLIHHFKLYTEGFKVPAGEVYAAVEAPKGE 355
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KP+R K++APGFAHL +++ + +G LAD+ AII
Sbjct: 356 FGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADVPAII 400
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPY DRLDYV+ M E + LA+E+L
Sbjct: 50 GEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLTGTV 109
Query: 363 VPLRAKYIRVMFT 375
+P RA IRV+++
Sbjct: 110 IPRRASLIRVLYS 122
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+ IRN INFGPQHPAAHGVL + E+
Sbjct: 21 EQSIRNFNINFGPQHPAAHGVLRMVLEL 48
>gi|240850586|ref|YP_002971986.1| NADH dehydrogenase I subunit D [Bartonella grahamii as4aup]
gi|240267709|gb|ACS51297.1| NADH dehydrogenase I subunit D [Bartonella grahamii as4aup]
Length = 396
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 145/286 (50%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLVEDIGNFIDPFLVALGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q +
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL+I+
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLDIK 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|395792418|ref|ZP_10471852.1| NADH-quinone oxidoreductase subunit D [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395432596|gb|EJF98575.1| NADH-quinone oxidoreductase subunit D [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 396
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLIALGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEIEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LAVEKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAVEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|423713825|ref|ZP_17688085.1| NADH-quinone oxidoreductase subunit D [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421631|gb|EJF87867.1| NADH-quinone oxidoreductase subunit D [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 396
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLIALGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LAVEKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAVEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|319407264|emb|CBI80903.1| NADH dehydrogenase I, D subunit [Bartonella sp. 1-1C]
Length = 396
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F LD+++ ++T NR++ QR D+G+V+ +A FS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLIALDKLDALITPNRIFKQRNVDIGVVNINEAWARAFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVD 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D K+ P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSSEKNGPVSSLDRKVVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRIKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|329118901|ref|ZP_08247596.1| NADH-quinone oxidoreductase subunit D [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464929|gb|EGF11219.1| NADH-quinone oxidoreductase subunit D [Neisseria bacilliformis ATCC
BAA-1200]
Length = 418
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 198/306 (64%), Gaps = 47/306 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNH+M +G+HALD+GAMT + F +RE++M+ YE SGARMHAAY RPGGV
Sbjct: 101 MFAEVTRILNHLMGIGSHALDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV 160
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P +LD I F F +R+D +E +LT+NR+
Sbjct: 161 YRDLPDFMPKYEASKFRNAKVLKELNEAREGTMLDFIDAFCQRFPSRIDTLETLLTDNRI 220
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VS E A+ GF+GVMLRGSGI+WD+RK QPY+ Y+ +FDIP+G +G+
Sbjct: 221 WKQRTVGIGVVSPERAMQKGFTGVMLRGSGIEWDVRKTQPYEVYDQMDFDIPVGLNGDCY 280
Query: 204 ---VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------------- 245
+ + EMRQS+RI++Q + K G V T D K++ P R+EMK
Sbjct: 281 DRYLCRINEMRQSVRIIQQCSDWLKHNPGPVITGDHKVAPPKRTEMKMGMEDLIHHFKLF 340
Query: 246 --GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLA 303
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++ KG LA
Sbjct: 341 TEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLA 400
Query: 304 DIVAII 309
D+VAII
Sbjct: 401 DVVAII 406
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 55/66 (83%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E +TY Q LPY DRLDYVSMM NEQ Y LAVEKLL I++P+RAKY
Sbjct: 38 DPHIGLLHRGTEKLAETRTYLQNLPYMDRLDYVSMMVNEQAYCLAVEKLLGIDIPIRAKY 97
Query: 370 IRVMFT 375
IR MF
Sbjct: 98 IRTMFA 103
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|114707371|ref|ZP_01440268.1| NADH dehydrogenase subunit D [Fulvimarina pelagi HTCC2506]
gi|114537252|gb|EAU40379.1| NADH dehydrogenase subunit D [Fulvimarina pelagi HTCC2506]
Length = 396
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+H++Y RP
Sbjct: 99 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHSSYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DI L+DDI + F D++E +LT+NR++ QR D+G+V+ +DA GFS
Sbjct: 159 GGVHQDIDQKLIDDIGEWCDPFLKVCDDLEGLLTDNRIFKQRNVDIGVVNLDDAWAMGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y+ EFDIP+G +G+ +I M EMR+++RI++Q I
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYDEMEFDIPVGKNGDCYDRYLIRMVEMREAVRIMKQCIE 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V K+ P R EMK G+ +P G Y AVEAPKG
Sbjct: 279 RLSGEEKTGPVSAPMGKVVPPKRPEMKRSMEALIHHFKLYTEGFHLPEGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KP+RCKIKAPGFAHL A++ + KG LAD+ AI+
Sbjct: 339 EFGVYLVADGTNKPHRCKIKAPGFAHLQAMDVMCKGHLLADVSAIL 384
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPH+GLLHRGTEKLIE+KTY QA+PYFDRLDYVS M E + LA+E+L +++
Sbjct: 32 GEIVERVDPHVGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMNQEHAFCLAIERLADVD 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 92 VPKRGQLIRVLYC 104
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 EIDVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|92117741|ref|YP_577470.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
gi|122417681|sp|Q1QL87.1|NUOD2_NITHX RecName: Full=NADH-quinone oxidoreductase subunit D 2; AltName:
Full=NADH dehydrogenase I subunit D 2; AltName:
Full=NDH-1 subunit D 2
gi|91800635|gb|ABE63010.1| NADH dehydrogenase subunit D [Nitrobacter hamburgensis X14]
Length = 402
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T ALDVGA+TP W FEEREK+M FYERASG+RMHAAY R
Sbjct: 105 IRVLYCEIGRILSHLLNVTTQALDVGALTPPLWGFEEREKLMMFYERASGSRMHAAYFRI 164
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F + +++ +LT++R++ QR D+G+VS + A +GFS
Sbjct: 165 GGVHQDLPPKLIDDIDAWCDPFLQVVADLDALLTDSRIFKQRNVDIGVVSLKQAWEWGFS 224
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS RI++Q I
Sbjct: 225 GVMVRGSGAAWDLRKAQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSARIMKQCIA 284
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V +D KI P R+EMK G+ VP G Y AVEAPKG
Sbjct: 285 KLRAADGQGPVAVEDNKIFPPRRAEMKRSMEALIHHFKLYTEGFRVPAGEVYAAVEAPKG 344
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDG++KPY+CKI+APGFAHL A++ I +G LAD+ AI+
Sbjct: 345 EFGVFLVSDGSNKPYKCKIRAPGFAHLQAMDFICRGHLLADVSAIL 390
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL I
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIA 97
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 98 VPRRGQLIRVLYC 110
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 12 MRNFTINFGPQHPAAHGVLRLVLEL 36
>gi|451942055|ref|YP_007462692.1| NADH dehydrogenase subunit D [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451901442|gb|AGF75904.1| NADH dehydrogenase subunit D [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 396
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+V+ ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLIALGKLDALVTPNRIFKQRNVDIGVVNIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKSGPVSSLDCKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LAVEKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAVEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|319404256|emb|CBI77849.1| NADH dehydrogenase I, D subunit [Bartonella rochalimae ATCC
BAA-1498]
Length = 396
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F LD+++ ++T NR++ QR D+G+V+ +A FS
Sbjct: 159 GGVHQDLPETLIEDIGNFIDPFLIALDKLDALITPNRIFKQRNVDIGVVNINEAWARAFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSTKIMRQCVD 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D K+ P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSSEKNGPVSSLDRKVVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRIKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|85717027|ref|ZP_01047989.1| NADH dehydrogenase delta subunit [Nitrobacter sp. Nb-311A]
gi|85696151|gb|EAQ34047.1| NADH dehydrogenase delta subunit [Nitrobacter sp. Nb-311A]
Length = 402
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY R
Sbjct: 105 IRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMMFYERASGSRMHAAYFRI 164
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F + +++ +LT NR++ QR D+G+V+ + A +GFS
Sbjct: 165 GGVHQDLPPKLINDIEAWCDPFLQVVADLDRLLTANRIFKQRNVDIGVVTLKQAWEWGFS 224
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 225 GVMVRGSGAAWDLRKAQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIA 284
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V +D KI P RSEMK G+ VP G Y AVEAPKG
Sbjct: 285 KLRAPDGQGPVAVEDNKIFPPRRSEMKRSMEALIHHFKLYTEGFHVPAGEIYAAVEAPKG 344
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPY+CKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 345 EFGVYLVSDGSNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAIL 390
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA E+LL I
Sbjct: 38 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAERLLGIA 97
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV++
Sbjct: 98 VPRRGQLIRVLYC 110
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 21 NDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
N+ L V +RN INFGPQHPAAHGVL L E+
Sbjct: 2 NEALGAVTPGMRNFTINFGPQHPAAHGVLRLVLEL 36
>gi|84686431|ref|ZP_01014325.1| NADH dehydrogenase delta subunit [Maritimibacter alkaliphilus
HTCC2654]
gi|84665614|gb|EAQ12090.1| NADH dehydrogenase delta subunit [Rhodobacterales bacterium
HTCC2654]
Length = 407
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 143/285 (50%), Positives = 201/285 (70%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 111 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHAAYFRP 170
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F A LD+++ +LTENR++ QR D+G+++ E+ L++G+S
Sbjct: 171 GGVHQDLPPKLIDDIEAWCHEFPAVLDDIDGLLTENRVFKQRNVDIGVITEEEILDWGYS 230
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y+ F+F + IG +G+ ++ M EMR+S++I+ QAI
Sbjct: 231 GVMVRGSGFAWDLRRSQPYECYDEFDFKVCIGKNGDCYDRYLVRMAEMRESVKIMLQAIE 290
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ E + D + K++ P R++MK G+ VP G Y AVEAPKGE
Sbjct: 291 KLRAPEGQGDVLARGKLTPPKRADMKTSMEALIHHFKLYTEGFHVPAGEVYCAVEAPKGE 350
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDGT+KPYR K++APG+ HL +++ + G LAD+ AII
Sbjct: 351 FGVYLVSDGTNKPYRAKLRAPGYLHLQSMDHVASGHQLADVAAII 395
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 53/73 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV M E + L +EKL +E
Sbjct: 44 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVGTMNQEHAWCLVIEKLCGVE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 104 VPRRASLIRVLYS 116
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+QIRN INFGPQHPAAHGVL L E+
Sbjct: 15 EQQIRNFNINFGPQHPAAHGVLRLVLEL 42
>gi|326387459|ref|ZP_08209068.1| NADH dehydrogenase subunit D [Novosphingobium nitrogenifigens DSM
19370]
gi|326208115|gb|EGD58923.1| NADH dehydrogenase subunit D [Novosphingobium nitrogenifigens DSM
19370]
Length = 403
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 141/286 (49%), Positives = 195/286 (68%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+A+
Sbjct: 106 AQYLRVLFAELTRICNHMLNIGSHVMDVGAMTPNLWLFEIREDCLTFFERASGARMHSAW 165
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ T L D+ ++ +NR++ QR D+ +VS EDAL
Sbjct: 166 FRPGGVHQDVPLKLLTDIADWLDTRLPELFDDAMSLVVDNRIFKQRNVDIALVSKEDALA 225
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+RG+GI WD+RK QPYD Y+ +F+IP+GT+ + ++ ++E+RQS RI++
Sbjct: 226 WGFSGPMIRGAGIPWDIRKAQPYDVYDRMDFEIPVGTNSDCYDRMMVRVEEVRQSARIMK 285
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + +MP G V T D K++ P R EMK G+ VP G Y A E+PKG
Sbjct: 286 QCLEQMPEGPVLTSDRKVAPPKRGEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKG 345
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+ F+HL A++ + KG L D AI+
Sbjct: 346 EFGVYLVSDGTNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAIL 391
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDY S + E Y LA+EKLLN+E
Sbjct: 42 GEIIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYCSPLAMEYSYVLAIEKLLNVE 101
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 102 VPLRAQYLRVLFA 114
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
++ I N INFGPQHPAAHGVL + E I RI HI
Sbjct: 13 DEVISNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHI 52
>gi|393718313|ref|ZP_10338240.1| NADH dehydrogenase subunit D [Sphingomonas echinoides ATCC 14820]
Length = 411
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 142/286 (49%), Positives = 193/286 (67%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G+H +DVGAMTP WLFE RE M F+ER SGARMH+AY
Sbjct: 114 AQYLRVLFAELTRISNHMLNLGSHVMDVGAMTPNLWLFEIREDCMNFFERVSGARMHSAY 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D P+ LL DI ++ T RL ++ ++ +NR++ QR D+ VS +DA+
Sbjct: 174 FRPGGVHQDAPLKLLTDIADWLDTRLPRLFEDAISLVADNRIFKQRNVDIATVSRDDAIK 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+RGSGI WDLRK QPYD Y +F++P+GT G+ ++ ++E+RQS RI++
Sbjct: 234 WGFSGPMIRGSGIAWDLRKAQPYDVYAKMDFEVPVGTRGDCYDRFMVRVEEVRQSARIMK 293
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + MP G + + D K+ P R+EMK GY VPPG Y A E+PKG
Sbjct: 294 QCLRDMPEGPIASLDRKVVPPKRAEMKRSMEALIHHFKLYTEGYHVPPGDVYVATESPKG 353
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPYRCKI+ F+HL A++ + KG LAD AI+
Sbjct: 354 EFGVYLVADGTNKPYRCKIRPTAFSHLQAMDFMAKGHMLADTTAIL 399
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 63/73 (86%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPH+GLLHRGTEKLIEYKTYTQALPYFDRLDY S +C E Y LAVEKLL++E
Sbjct: 50 GEIVERVDPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYCSPLCMEHSYVLAVEKLLDLE 109
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 110 VPLRAQYLRVLFA 122
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N INFGPQHPAAHGVL L E+
Sbjct: 23 EIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|395789882|ref|ZP_10469390.1| NADH-quinone oxidoreductase subunit D [Bartonella taylorii 8TBB]
gi|395428104|gb|EJF94186.1| NADH-quinone oxidoreductase subunit D [Bartonella taylorii 8TBB]
Length = 396
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 143/286 (50%), Positives = 195/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLIALSKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ +FDIP+G + + +I M+EMRQS +I+ Q +N
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMDFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVN 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P R EMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRCEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPYR K++APGFAHL A+ + +G LAD AI+
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMNFLTRGHMLADATAIL 384
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA+PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAVPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|254419243|ref|ZP_05032967.1| NADH dehydrogenase (quinone), D subunit [Brevundimonas sp. BAL3]
gi|196185420|gb|EDX80396.1| NADH dehydrogenase (quinone), D subunit [Brevundimonas sp. BAL3]
Length = 414
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 148/288 (51%), Positives = 193/288 (67%), Gaps = 23/288 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L++EI RI NH++ A+DVGA+TP W EEREK+M FYERASGAR+HA Y
Sbjct: 115 AQLIRVLYSEIGRIGNHLLNATMQAMDVGALTPPLWGHEEREKLMVFYERASGARLHANY 174
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P+ L+DDI + F L ++E ++TENR++ QR D+G+VS E AL +
Sbjct: 175 FRPGGVHQDLPMDLIDDIGRWCHEFPKALTDIESLVTENRIFKQRNVDIGVVSKEQALAW 234
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+GVMLRGS I WDLRK QPY+ Y EFDIP+G +G+ + ++EM+QS+RI+EQ
Sbjct: 235 GFTGVMLRGSDIAWDLRKSQPYECYAELEFDIPVGKNGDCWDRYLCRIEEMKQSVRIMEQ 294
Query: 220 AINKM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAP 261
I+K+ PG V +D KI P R EMK G+ P G Y +VEAP
Sbjct: 295 CIHKLRNCPGEPVMLEDNKIVPPRRGEMKRSMESLIHHFKLYTEGFKTPEGEVYASVEAP 354
Query: 262 KGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
KGEFG+YLVSDGT+KPYR KI APGF HL A++ I G LAD+ AI+
Sbjct: 355 KGEFGIYLVSDGTNKPYRVKISAPGFRHLQAMDWINSGHQLADVSAIL 402
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKL+E +TY Q +PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 51 GEIVERVDPHIGLLHRGTEKLMEARTYLQNVPYLDRLDYVAPMNQEHAFCLAIEKLLGVE 110
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+++
Sbjct: 111 VPYRAQLIRVLYS 123
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
R INFGPQHPAAHGVL L E+
Sbjct: 26 RKFTINFGPQHPAAHGVLRLVLEL 49
>gi|218509668|ref|ZP_03507546.1| NADH dehydrogenase subunit D [Rhizobium etli Brasil 5]
Length = 379
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 189/270 (70%), Gaps = 24/270 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAYVRP
Sbjct: 110 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LD+++++LT NR++ QR D+G+VS ED +GFS
Sbjct: 170 GGVHQDLPEKLVQDIGDWCDPFLKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIPIG +G+ +I M EMRQS+RI++Q +N
Sbjct: 230 GVMVRGSGAAWDLRRAQPYECYSDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVN 289
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 290 RLLSDAKTGPFSSIDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 349
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAAL 293
EFGVYLVSDG++KPYRCKI+APG+AHL A+
Sbjct: 350 EFGVYLVSDGSNKPYRCKIRAPGYAHLQAM 379
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E Y+LAVE+LL IE
Sbjct: 43 GEFVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAYALAVERLLGIE 102
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 103 IPIRGQLIRVLYS 115
>gi|121601914|ref|YP_989073.1| NADH dehydrogenase subunit D [Bartonella bacilliformis KC583]
gi|421760879|ref|ZP_16197690.1| NADH dehydrogenase subunit D [Bartonella bacilliformis INS]
gi|218534390|sp|A1USX0.1|NUOD_BARBK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120614091|gb|ABM44692.1| NADH dehydrogenase (quinone), D subunit [Bartonella bacilliformis
KC583]
gi|411174110|gb|EKS44146.1| NADH dehydrogenase subunit D [Bartonella bacilliformis INS]
Length = 396
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 145/286 (50%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI R+LNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRLLNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L ++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPEVLIEDIGNFIDPFLVALGNLDALITPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKDGPVSSLDRKIVPPKRSEMKNSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LAVEKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAVEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|395779974|ref|ZP_10460442.1| NADH-quinone oxidoreductase subunit D [Bartonella washoensis
085-0475]
gi|395419724|gb|EJF86020.1| NADH-quinone oxidoreductase subunit D [Bartonella washoensis
085-0475]
Length = 396
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 195/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L ++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLVSLGRLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKNQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P R EMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTENNGPVSSLDRKIVPPKRCEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
+P R + IRV+F+
Sbjct: 92 IPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|83953910|ref|ZP_00962631.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. NAS-14.1]
gi|83841855|gb|EAP81024.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. NAS-14.1]
Length = 407
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEERE +M FYERA GAR+HAAY RP
Sbjct: 110 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREDLMIFYERACGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTF-SARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGF 166
GGV D+P LLDDI + F S + +V+ +LTENR++ QR D+GIVS +D ++GF
Sbjct: 170 GGVHQDLPPALLDDIEAWTHKFLSGFMVDVDQLLTENRIFKQRNADIGIVSEQDIQDWGF 229
Query: 167 SGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAI 221
SGVM+RGSG+ WDLR+ QPY+ Y+ F+F IP G +G+ ++ M+EMRQS I++QAI
Sbjct: 230 SGVMVRGSGLAWDLRRAQPYECYDEFDFQIPTGVNGDCYDRYLVRMEEMRQSTYIIQQAI 289
Query: 222 NKMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ E + D + KI+ PSR+ MK G+ VP G Y AVEAPKG
Sbjct: 290 EKLRAPEGQGDVLARGKITPPSRTAMKTDMESLIHHFKLYTEGFHVPAGEVYCAVEAPKG 349
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DG++KPYR K++APG+ HL A++ I KG LAD+ AII
Sbjct: 350 EFGVYLVADGSNKPYRAKLRAPGYLHLQAMDYIAKGHQLADVAAII 395
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 43 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 102
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 103 VPRRASLIRVLYS 115
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|423712691|ref|ZP_17686991.1| NADH-quinone oxidoreductase subunit D [Bartonella washoensis
Sb944nv]
gi|395411484|gb|EJF78006.1| NADH-quinone oxidoreductase subunit D [Bartonella washoensis
Sb944nv]
Length = 396
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 143/286 (50%), Positives = 195/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L ++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLVSLGRLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P R EMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRCEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
+P R + IRV+F+
Sbjct: 92 IPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|332185669|ref|ZP_08387416.1| NADH dehydrogenase (quinone), D subunit [Sphingomonas sp. S17]
gi|332014027|gb|EGI56085.1| NADH dehydrogenase (quinone), D subunit [Sphingomonas sp. S17]
Length = 390
Score = 290 bits (742), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 141/280 (50%), Positives = 191/280 (68%), Gaps = 21/280 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
FAE+TRI NH++ +G+H +DVGAMTP W+FE RE M FYERASGARMHA Y R GGV
Sbjct: 99 FFAELTRISNHMLNLGSHVMDVGAMTPNLWMFEIREDCMNFYERASGARMHANYFRVGGV 158
Query: 111 ALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
D+P+ LL DI ++ T +L ++ +++ NR++ QR D+ +V+ EDA+ +GFSG
Sbjct: 159 HQDVPLKLLTDIADWLDTRLPQLFEDAIGLVSNNRIFKQRNVDIAVVNREDAIKWGFSGP 218
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
M+RGSGI WDLRK QPYD Y+ +FD+P+GT G+ ++ ++E+RQS RI++Q + +M
Sbjct: 219 MIRGSGIPWDLRKSQPYDAYDKVDFDVPVGTSGDCYDRFMVRVEEVRQSARIMKQCLAQM 278
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V D K++ P R+EMK GY VP G Y A E+PKGEFGVYL
Sbjct: 279 PEGPVLATDRKVTPPKRAEMKRSMEALIHHFKLYTEGYHVPAGEVYVATESPKGEFGVYL 338
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDG++KPYRCKI+ F+HL A+E + KG LAD AI+
Sbjct: 339 VSDGSNKPYRCKIRPTAFSHLQAMEFMSKGHMLADTTAIL 378
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S MC E Y LAVEKLL++E
Sbjct: 29 GEIVERVDPHVGLLHRGTEKLIEYKTYAQALPYFDRLDYCSPMCMEHSYVLAVEKLLDLE 88
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+R F
Sbjct: 89 VPLRAQYLRTFFA 101
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
I+N INFGPQHPAAHGVL L E+
Sbjct: 2 SIQNYTINFGPQHPAAHGVLRLVMEL 27
>gi|260574761|ref|ZP_05842764.1| NADH dehydrogenase I, D subunit [Rhodobacter sp. SW2]
gi|259023178|gb|EEW26471.1| NADH dehydrogenase I, D subunit [Rhodobacter sp. SW2]
Length = 411
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 199/284 (70%), Gaps = 23/284 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI R+LNH+M V T A+DVGA+TP W F RE++M FYERASGARMHAAY RP
Sbjct: 117 IRVLFSEIGRLLNHLMNVTTGAMDVGALTPPLWGFTAREELMGFYERASGARMHAAYFRP 176
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ L+DDI + F LD+++ ++TENR++ QRT D+ I+S +DAL++GFS
Sbjct: 177 GGVHQDLDARLIDDIETWAIGFPKLLDDLDGLVTENRVFKQRTVDIAIISQQDALDWGFS 236
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F +PIG +G+ ++ M+EMRQS RI+ QA+
Sbjct: 237 GVMVRGSGMAWDLRRAQPYECYDEFDFLVPIGKNGDCYDRYLLRMEEMRQSTRIIRQALT 296
Query: 223 KMPG--GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ GEV KI+ P R EMK G+ VP G Y AVEAPKGEF
Sbjct: 297 KLRAEPGEVLARG-KITPPKRGEMKTSMEALIHHFKLYTEGFHVPAGQIYAAVEAPKGEF 355
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDG++KPYR K++APG+AHL A++ + G LAD+ AI+
Sbjct: 356 GVYLVSDGSNKPYRIKLRAPGYAHLQAMDFMAAGHQLADVAAIM 399
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPY DRLDYV+ M E Y LA+E+L
Sbjct: 50 GEIVERADPHIGLLHRGTEKLMESRTYLQNLPYMDRLDYVAPMNQEHAYCLAIERLTGTV 109
Query: 363 VPLRAKYIRVMFT 375
+P RA IRV+F+
Sbjct: 110 IPRRASLIRVLFS 122
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 21 EQRIRNFNINFGPQHPAAHGVLRLVLEL 48
>gi|83858411|ref|ZP_00951933.1| NADH dehydrogenase delta subunit [Oceanicaulis sp. HTCC2633]
gi|83853234|gb|EAP91086.1| NADH dehydrogenase delta subunit [Oceanicaulis sp. HTCC2633]
Length = 396
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 145/286 (50%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
V +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y RP
Sbjct: 99 VRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMGFYERASGARLHAHYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D++E +LTENR++ R D+G+VS ++AL +GFS
Sbjct: 159 GGVHQDLPQELIDDIVAWCEQFPQHVDDLETLLTENRIFKARNVDIGVVSKQEALEWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ EF IP+G +G+ + M+EMR+S++I++Q +
Sbjct: 219 GVMVRGSGLAWDLRRSQPYEVYDELEFQIPLGKNGDNYDRYLCRMEEMRESVKIMKQCCD 278
Query: 223 KMPGGEVRTD----DMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ E + D D K + P R+EMK G VP G Y AVEAPKG
Sbjct: 279 WLSREENQGDVLPVDTKFAPPRRAEMKRSMEALIQHFKLYTEGVHVPEGQYYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+ DGT+KPYR KI+APGF HL A++ + KG LAD+ AI+
Sbjct: 339 EFGVYLIGDGTNKPYRLKIRAPGFPHLQAMDHLNKGHMLADVSAIL 384
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E+KTY Q + YFDRLDYV+ M E + LA+EKL I
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLLEHKTYLQGIGYFDRLDYVAPMNQEHAFCLAIEKLAGIP 91
Query: 363 VPLRAKYIRVMFT 375
VP RA Y+RV+++
Sbjct: 92 VPKRASYVRVLYS 104
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGP HPAAHGVL + E+
Sbjct: 3 ETDIRNFTINFGPVHPAAHGVLRMVLEL 30
>gi|266654|sp|P29916.1|NQO4_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 4; AltName:
Full=NADH dehydrogenase I, subunit 4; AltName:
Full=NDH-1, subunit 4
gi|150623|gb|AAA03038.1| NADH dehydrogenase [Paracoccus denitrificans]
Length = 412
Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 143/285 (50%), Positives = 200/285 (70%), Gaps = 24/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH+M V T A+DVGA+TP W FE RE++M FYERA GAR+HAAY RP
Sbjct: 117 IRVLYSEIGRILNHLMGVTTGAMDVGALTPPLWGFEAREELMIFYERACGARLHAAYFRP 176
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + F +D+++ +LTENR++ QR D+GIV+ DAL++G++
Sbjct: 177 GGVHQDLPPDLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDIGIVTEADALDWGYT 236
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M EMR+S +I++QA+
Sbjct: 237 GVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQ 296
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ P G+V K++ P R+EMK G+ VP G Y AVE PKGE
Sbjct: 297 KLRAEPAGDVLARG-KLTPPRRAEMKRDMESLIHHFKLYTEGFKVPAGEVYAAVEGPKGE 355
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KP+R K++APGFAHL +++ + +G LAD+ AII
Sbjct: 356 FGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADVPAII 400
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPY DRLDYV+ M E + LA+E+L
Sbjct: 50 GEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLTGTV 109
Query: 363 VPLRAKYIRVMFT 375
+P RA IRV+++
Sbjct: 110 IPRRASLIRVLYS 122
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+ IRN INFGPQHPAAHG+L + E+
Sbjct: 21 EQSIRNFNINFGPQHPAAHGLLRMVLEL 48
>gi|456354959|dbj|BAM89404.1| NADH dehydrogenase subunit D [Agromonas oligotrophica S58]
Length = 398
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 198/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
V +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAA+ R
Sbjct: 101 VRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAFFRI 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D+++ +LT NR++ QR D+G+V+ + A +GFS
Sbjct: 161 GGVHQDLPPKLIDDIDAWCDPFLKVVDDLDRLLTANRIFKQRNVDIGVVTLKQAWEWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKSQPYECYAEMDFDIPIGKNGDCYDRYLIRMEEMRQSVRIMKQCIQ 280
Query: 223 KM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ V D KI+ P R EMK G VP G Y AVEAPKG
Sbjct: 281 KLRAPDGQGPVVVADNKIAPPRRGEMKRSMEALIHHFKLYTEGVHVPAGEVYVAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DG++KPY+CKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 341 EFGVYLVADGSNKPYKCKIRAPGFAHLQAMDFLCRGHLLADVSAIL 386
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL IE
Sbjct: 34 GEVVERVDPHIGLLHRGTEKLIETKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIE 93
Query: 363 VPLRAKYIRVMFT 375
VP R + +RV++
Sbjct: 94 VPRRGQLVRVLYC 106
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
+RN INFGPQHPAAHGVL L E+
Sbjct: 8 LRNFTINFGPQHPAAHGVLRLVLEL 32
>gi|329850726|ref|ZP_08265571.1| NADH-quinone oxidoreductase subunit D [Asticcacaulis biprosthecum
C19]
gi|328841041|gb|EGF90612.1| NADH-quinone oxidoreductase subunit D [Asticcacaulis biprosthecum
C19]
Length = 404
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 142/287 (49%), Positives = 198/287 (68%), Gaps = 22/287 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HA Y
Sbjct: 106 AQYIRVIFSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHANY 165
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L++DI + F L ++E ++TENR++ QR D+G+VS E A ++
Sbjct: 166 FRPGGVHQDLPPELIEDIIAWCKYFPKPLADIETLVTENRIFKQRNVDIGVVSKEQAFDW 225
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+GV++RGS + WDLRK QPY+ Y EFDI +G +G+ + ++EM+QS++I+ Q
Sbjct: 226 GFTGVLIRGSNVAWDLRKSQPYECYAELEFDIVLGKNGDCWDRYLCRIEEMKQSVKIMLQ 285
Query: 220 AINKMPG--GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
++K+ GEV + D K++ P R+EMK G+ P G Y AVEAPK
Sbjct: 286 CLDKLKQTPGEVLSRDHKVTPPRRAEMKNSMEALIHHFKLYTEGFKTPEGEVYAAVEAPK 345
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDGT+KPYRCKI+APGF HL A++ + +G LAD+ AI+
Sbjct: 346 GEFGVYLVSDGTNKPYRCKIRAPGFPHLQAMDWLNRGHLLADVSAIL 392
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKL+E +TY Q +PYFDRLDYV+ M E + LA+EKLL ++
Sbjct: 42 GEIVERVDPHIGLLHRGTEKLMESRTYLQNIPYFDRLDYVAPMNQEHAFCLAIEKLLGLD 101
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV+F+
Sbjct: 102 VPKRAQYIRVIFS 114
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
R INFGPQHPAAHGVL L ++
Sbjct: 17 RKFTINFGPQHPAAHGVLRLVLDL 40
>gi|224824820|ref|ZP_03697927.1| NADH dehydrogenase I, D subunit [Pseudogulbenkiania ferrooxidans
2002]
gi|347538442|ref|YP_004845866.1| NADH dehydrogenase (ubiquinone) subunit D [Pseudogulbenkiania sp.
NH8B]
gi|224603313|gb|EEG09489.1| NADH dehydrogenase I, D subunit [Pseudogulbenkiania ferrooxidans
2002]
gi|345641619|dbj|BAK75452.1| NADH dehydrogenase (ubiquinone), D subunit [Pseudogulbenkiania sp.
NH8B]
Length = 417
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 154/312 (49%), Positives = 199/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNH++ +G HA+D+GAMT F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFAEITRILNHLLWIGAHAIDIGAMTVFLYAFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +DE E +
Sbjct: 154 FRPGGVYRDLPDSMPQYTVSKIKNARELAKLNEGRQGSMLDFIDAFTQRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A N GFSG MLRGSGI+WDLRK QPYD Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERARNLGFSGPMLRGSGIEWDLRKKQPYDVYDRMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ ++ ++EMRQS RIV+Q ++ K G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRIEEMRQSNRIVKQCVDWLKKNPGPVITDNFKVAPPSREGMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APG+AHLAAL+++
Sbjct: 334 HHFKLFTEGMHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLAALDEMS 393
Query: 298 KGSFLADIVAII 309
+G +AD+VAII
Sbjct: 394 RGHMIADVVAII 405
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPH+GLLHRGTEKL E KT+ Q+LPY DRLDYVSMM NE Y LA+EKLL +E
Sbjct: 30 GEVIQRADPHVGLLHRGTEKLAESKTFIQSLPYMDRLDYVSMMSNEHAYCLAIEKLLGVE 89
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRVMF
Sbjct: 90 VPERAQYIRVMFA 102
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|83942671|ref|ZP_00955132.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. EE-36]
gi|83846764|gb|EAP84640.1| NADH dehydrogenase delta subunit [Sulfitobacter sp. EE-36]
Length = 407
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 199/286 (69%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEERE +M FYERA GAR+HAAY RP
Sbjct: 110 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREDLMIFYERACGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTF-SARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGF 166
GGV D+P LLDDI + F S + +V+ +LTENR++ QR D+GIVS +D ++GF
Sbjct: 170 GGVHQDLPPALLDDIEAWTHKFLSGFMVDVDQLLTENRIFKQRNADIGIVSEQDIQDWGF 229
Query: 167 SGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAI 221
SGVM+RGSG+ WDLR+ QPY+ Y+ F+F IP G +G+ ++ M+EMRQS I++QAI
Sbjct: 230 SGVMVRGSGLAWDLRRAQPYECYDEFDFQIPTGVNGDCYDRYLVRMEEMRQSTYIIQQAI 289
Query: 222 NKMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ E + D + KI+ PSR+ MK G+ VP G Y AVEAPKG
Sbjct: 290 EKLRAPEGQGDVLARGKITPPSRTAMKTDMESLIHHFKLYTEGFHVPAGEVYCAVEAPKG 349
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DG++KPYR K++APG+ HL A++ + KG LAD+ AII
Sbjct: 350 EFGVYLVADGSNKPYRAKLRAPGYLHLQAMDYVAKGHQLADVAAII 395
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 43 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 102
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 103 VPRRASLIRVLYS 115
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|395765856|ref|ZP_10446447.1| NADH-quinone oxidoreductase subunit D [Bartonella sp. DB5-6]
gi|395410861|gb|EJF77408.1| NADH-quinone oxidoreductase subunit D [Bartonella sp. DB5-6]
Length = 396
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+REK+M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQREKLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+GIVS ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLLALGKLDALVTPNRIFKQRNVDIGIVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ +FDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMDFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G E V + + KI P R EMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLGAEKSGPVSSLNRKIVPPKRCEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|319783429|ref|YP_004142905.1| NADH dehydrogenase I subunit D [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169317|gb|ADV12855.1| NADH dehydrogenase I, D subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 396
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/286 (50%), Positives = 193/286 (67%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
V +LF EI R+L+H++ V T A+D+GA+TP W F EREK+M FYERASGARMHA Y R
Sbjct: 99 VRVLFCEIGRLLSHLLNVTTQAMDIGALTPPLWGFAEREKLMVFYERASGARMHANYFRI 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI+ F F D ++D+LT +R++ QR DVG++ +DA +GFS
Sbjct: 159 GGVHQDLPAKLLDDIWAFCDPFLKVCDNLDDLLTGSRIFKQRNVDVGVIGLDDAWRWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y + +FDIP+G +G+ ++ M+EMRQS+RI++Q +
Sbjct: 219 GVMVRGSGAAWDLRKAQPYECYPDMDFDIPVGKNGDCYDRYLVRMEEMRQSVRIMKQCLE 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ G V + KI+ P R+ MK G+ VP G Y AVEAPKG
Sbjct: 279 KLRSPEGQGPVAIPNQKITPPRRATMKRSMEATIQHFKLYTEGHRVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG + PYRCKI+AP FAHL A++ + +G +AD+ AII
Sbjct: 339 EFGVYLVSDGGNVPYRCKIRAPSFAHLQAMDFLSRGHMIADVAAII 384
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIE+K Y QALPYFDRLDYV+ M E + LA EKLL+I
Sbjct: 32 GEIVERADPHIGLLHRGTEKLIEHKNYLQALPYFDRLDYVAPMNQEHAFCLAAEKLLDIT 91
Query: 363 VPLRAKYIRVMFT 375
VP R + +RV+F
Sbjct: 92 VPKRGQLVRVLFC 104
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
VE +RN INFGPQHP+AHGVL L E+
Sbjct: 2 VEAAVRNFTINFGPQHPSAHGVLRLVLEL 30
>gi|395791022|ref|ZP_10470481.1| NADH-quinone oxidoreductase subunit D [Bartonella alsatica IBS 382]
gi|395409318|gb|EJF75917.1| NADH-quinone oxidoreductase subunit D [Bartonella alsatica IBS 382]
Length = 396
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 194/286 (67%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS +A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLIALGKLDALVTPNRIFKQRNVDIGVVSINEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y EFDIP+G + + +I M+EMRQS +I+ Q +
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYNEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVE 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P RSEMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRSEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL+SDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLISDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL ++
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVD 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|148555892|ref|YP_001263474.1| NADH dehydrogenase subunit D [Sphingomonas wittichii RW1]
gi|218534469|sp|A5VAM0.1|NUOD_SPHWW RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|148501082|gb|ABQ69336.1| NADH dehydrogenase I, D subunit [Sphingomonas wittichii RW1]
Length = 406
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 142/286 (49%), Positives = 196/286 (68%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMHAA+
Sbjct: 109 AQYLRVLFAELTRICNHMLNIGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHAAW 168
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ T RL ++ + +NR++ QR DVG+VS EDAL
Sbjct: 169 FRPGGVHQDVPLKLLTDIGDWLDTRLPRLFEDAVSLFADNRIFKQRNVDVGVVSKEDALA 228
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+R +GI WD+RK QPYD Y+ +F+IP+GT G+ ++ ++E+RQS RI++
Sbjct: 229 WGFSGPMIRAAGIPWDIRKSQPYDVYDRMDFEIPVGTKGDCYDRVMVRIEEVRQSARIMK 288
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q +++MP G + + D K+ P R EMK G+ VP G Y A E+PKG
Sbjct: 289 QCLSEMPEGPIASLDRKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGDVYVATESPKG 348
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+ F+HL A++ + KG LAD AI+
Sbjct: 349 EFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAIL 394
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S + E Y LA+EKLL +E
Sbjct: 45 GEIVERVDPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYCSPLGMEHSYVLAIEKLLQLE 104
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 105 VPLRAQYLRVLFA 117
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 22 DNLVPV----EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D L P E +I+N INFGPQHPAAHGVL + E+
Sbjct: 6 DTLTPEAQKGEVEIQNYTINFGPQHPAAHGVLRMVMEL 43
>gi|94496479|ref|ZP_01303056.1| NADH dehydrogenase I, D subunit [Sphingomonas sp. SKA58]
gi|94424225|gb|EAT09249.1| NADH dehydrogenase I, D subunit [Sphingomonas sp. SKA58]
Length = 411
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 139/286 (48%), Positives = 196/286 (68%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + + FAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+AY
Sbjct: 114 AQYLRVFFAELTRICNHMLNLGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAY 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ T RL ++ ++ +NR++ QR D+ +VS EDAL
Sbjct: 174 FRPGGVHQDVPLKLLTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDIAVVSKEDALK 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+RGSGI WD+RK QPYD Y+ +FD+P+GT+ + ++ ++E+RQS RI++
Sbjct: 234 WGFSGPMIRGSGIPWDIRKAQPYDVYDRMDFDVPVGTNFDCYDRFMVRVEEVRQSARIMK 293
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q +N+MP G + + D K+ P R EMK G+ VP G Y A E+PKG
Sbjct: 294 QCLNEMPEGPIASFDRKVVPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKG 353
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DG++KPYRCKI+ F+HL A++ + KG LAD A++
Sbjct: 354 EFGVYLVADGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVL 399
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S + E Y LAVEKLLN+E
Sbjct: 50 GEIVERCDPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYCSPLGMEHSYVLAVEKLLNLE 109
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV F
Sbjct: 110 VPLRAQYLRVFFA 122
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +I+N INFGPQHPAAHGVL L E+
Sbjct: 21 DTEIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|410694433|ref|YP_003625055.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Thiomonas sp. 3As]
gi|294340858|emb|CAZ89253.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D)
(NDH-1, chain D) [Thiomonas sp. 3As]
Length = 417
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/309 (48%), Positives = 196/309 (63%), Gaps = 47/309 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITR+LNH+M +G H LD GAMT F + F ERE + + YE SGARMHAAY RP
Sbjct: 97 IRVMFAEITRLLNHLMWLGAHGLDCGAMTVFLYAFREREDLFDMYEAVSGARMHAAYFRP 156
Query: 108 GGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P LLD I F F A +DE E +LT+
Sbjct: 157 GGVYRDLPDSMAQYGESKIRNARAVEARNAGRQGSLLDFIDDFTQRFPAYVDEYETLLTD 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QRT +G+VS E A+N G +G MLRGSG+ WDLRK QPYD Y+ +FDIP+G +G
Sbjct: 217 NRIWKQRTVGIGVVSPERAMNLGMTGPMLRGSGVVWDLRKTQPYDVYDRMDFDIPVGKNG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK---------- 245
+ ++ M+EMRQS RI++Q ++ + G V TD+ K++ P+R EMK
Sbjct: 277 DCYDRYLVRMEEMRQSNRIIKQCVDWLRANPGPVITDNHKVAAPAREEMKTSMEALIHHF 336
Query: 246 -----GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGS 300
G VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLAAL+++ +G
Sbjct: 337 KLFSEGMRVPEGQAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLAALDEMSRGH 396
Query: 301 FLADIVAII 309
+AD+VAII
Sbjct: 397 MIADVVAII 405
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHR TEKL E+KTY QALPY DRLDYVSMMCNE Y LA+EKLL +E
Sbjct: 30 GEVVQRADPHIGLLHRATEKLAEHKTYIQALPYMDRLDYVSMMCNEHAYCLAIEKLLGVE 89
Query: 363 VPLRAKYIRVMFT 375
VPLR +YIRVMF
Sbjct: 90 VPLRGQYIRVMFA 102
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|49475655|ref|YP_033696.1| NADH dehydrogenase subunit D [Bartonella henselae str. Houston-1]
gi|81696157|sp|Q6G391.1|NUOD_BARHE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|49238462|emb|CAF27690.1| NADH dehydrogenase I, D subunit [Bartonella henselae str.
Houston-1]
Length = 396
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLVEDIGNFIDPFLIALGKLDALITPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK QPY+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQPYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ E V + D KI P R EMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKNEPVSSLDRKIVPPKRCEMKSSMEALIHHFKLYTEGFRTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|296136703|ref|YP_003643945.1| NADH dehydrogenase I subunit D [Thiomonas intermedia K12]
gi|295796825|gb|ADG31615.1| NADH dehydrogenase I, D subunit [Thiomonas intermedia K12]
Length = 417
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/309 (48%), Positives = 196/309 (63%), Gaps = 47/309 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++FAEITR+LNH+M +G H LD GAMT F + F ERE + + YE SGARMHAAY RP
Sbjct: 97 IRVMFAEITRLLNHLMWLGAHGLDCGAMTVFLYAFREREDLFDMYEAVSGARMHAAYFRP 156
Query: 108 GGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P LLD I F F A +DE E +LT+
Sbjct: 157 GGVYRDLPDRMAQYGESKIRNARAVEARNAGRQGSLLDFIDDFTQRFPAYVDEYETLLTD 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QRT +G+VS E A+N G +G MLRGSG+ WDLRK QPYD Y+ +FDIP+G +G
Sbjct: 217 NRIWKQRTVGIGVVSPERAMNLGMTGPMLRGSGVVWDLRKTQPYDVYDRMDFDIPVGKNG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK---------- 245
+ ++ M+EMRQS RI++Q ++ + G V TD+ K++ P+R EMK
Sbjct: 277 DCYDRYLVRMEEMRQSNRIIKQCVDWLRANPGPVITDNHKVAAPAREEMKTSMEALIHHF 336
Query: 246 -----GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGS 300
G VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLAAL+++ +G
Sbjct: 337 KLFSEGMRVPEGQAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLAALDEMSRGH 396
Query: 301 FLADIVAII 309
+AD+VAII
Sbjct: 397 MIADVVAII 405
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHR TEKL E+KTY QALPY DRLDYVSMMCNE Y LA+EKLL +E
Sbjct: 30 GEVVQRADPHIGLLHRATEKLAEHKTYIQALPYMDRLDYVSMMCNEHAYCLAIEKLLGVE 89
Query: 363 VPLRAKYIRVMFT 375
VPLR +YIRVMF
Sbjct: 90 VPLRGQYIRVMFA 102
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|334344827|ref|YP_004553379.1| NAD(P)H-quinone oxidoreductase subunit H [Sphingobium
chlorophenolicum L-1]
gi|334101449|gb|AEG48873.1| NAD(P)H-quinone oxidoreductase subunit H [Sphingobium
chlorophenolicum L-1]
Length = 411
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 139/286 (48%), Positives = 197/286 (68%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + + FAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+A+
Sbjct: 114 AQYLRVFFAELTRICNHMLNLGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAW 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ T RL ++ ++ +NR++ QR D+ +VS EDAL
Sbjct: 174 FRPGGVHQDVPLKLLTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDIAVVSKEDALK 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+RGSGI WD+RK QPYD Y+ EFD+P+GT+ + ++ ++E+RQS RI++
Sbjct: 234 WGFSGPMIRGSGIPWDIRKAQPYDVYDRMEFDVPVGTNFDCYDRFMVRVEEVRQSARIMK 293
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q +++MP G + + D K+S P R EMK G+ VP G Y A E+PKG
Sbjct: 294 QCLSEMPEGPIASFDRKVSPPKRGEMKRSMEALIHHFKLYTEGFHVPAGEVYVATESPKG 353
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DG++KPYRCKI+ F+HL A++ + KG LAD A++
Sbjct: 354 EFGVYLVADGSNKPYRCKIRPTAFSHLQAMDFMMKGHMLADTTAVL 399
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S + E Y LA+EKLLN+E
Sbjct: 50 GEIVERCDPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYCSPLGMEHSYVLAIEKLLNLE 109
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV F
Sbjct: 110 VPLRAQYLRVFFA 122
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +I+N INFGPQHPAAHGVL L E+
Sbjct: 21 DTEIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|296313744|ref|ZP_06863685.1| NADH dehydrogenase, D subunit [Neisseria polysaccharea ATCC 43768]
gi|296839667|gb|EFH23605.1| NADH dehydrogenase, D subunit [Neisseria polysaccharea ATCC 43768]
Length = 418
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 201/312 (64%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 ARYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ ++ G V T + K ++P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCVDWLRVNPGPVITTNHKFASPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRARY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|325983286|ref|YP_004295688.1| NADH dehydrogenase I subunit D [Nitrosomonas sp. AL212]
gi|325532805|gb|ADZ27526.1| NADH dehydrogenase I, D subunit [Nitrosomonas sp. AL212]
Length = 417
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/313 (49%), Positives = 201/313 (64%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +G HALDVGAMT F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLWIGAHALDVGAMTMFLYAFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDSMPKYQHSKVHSEKQTRVRNENREGSLLDFIEDFTNRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR D+G+VS E A GF+G MLRGSG++WDLRK QPY+ Y+ EFDIP+G
Sbjct: 214 LTDNRIWKQRLVDIGVVSPERAKALGFTGPMLRGSGVEWDLRKKQPYEVYDRLEFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ +I M+E RQS RI++Q ++ K PG V TD+ K++ PSR +MK
Sbjct: 274 VNGDCYDRYLIRMEEFRQSNRIIKQCVDWLRKNPGI-VITDNHKVAPPSRVDMKQNMEEM 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VPPG Y AVE PKGEFG+YLVS+G +KPYR KI+APGFAHLAAL+++
Sbjct: 333 IHHFKLFTEGFHVPPGEAYVAVEHPKGEFGIYLVSNGANKPYRLKIRAPGFAHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
+G ++D+VAII
Sbjct: 393 SRGHMISDVVAII 405
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHR TEKL E KTY Q++PY DRLDYVSMM NE Y +A+EKLL IE
Sbjct: 30 GEVVRRADPHIGLLHRATEKLAENKTYIQSVPYMDRLDYVSMMVNEHAYVMAIEKLLQIE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|345876271|ref|ZP_08828045.1| NADH dehydrogenase, D subunit [Neisseria weaveri LMG 5135]
gi|417957632|ref|ZP_12600552.1| NADH dehydrogenase, D subunit [Neisseria weaveri ATCC 51223]
gi|343966876|gb|EGV35128.1| NADH dehydrogenase, D subunit [Neisseria weaveri LMG 5135]
gi|343967965|gb|EGV36203.1| NADH dehydrogenase, D subunit [Neisseria weaveri ATCC 51223]
Length = 418
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 145/306 (47%), Positives = 198/306 (64%), Gaps = 47/306 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNH+M VG HALD+GAMT + F +RE++M+ YE SGARMHAAY RPGGV
Sbjct: 101 MFAEVTRILNHLMGVGAHALDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV 160
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P +LD I HF F R+DE+E +LT+NR+
Sbjct: 161 YRDLPDFMPKYESSKFRNAKVLKELNQGREGSMLDFIDHFCERFPKRIDELETLLTDNRI 220
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G +G+
Sbjct: 221 WKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDIRKKQPYEIYDKLDFDIPVGVNGDCY 280
Query: 204 ---VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------------- 245
+ + EMRQS+RI++Q + + G V ++ K++ P R++MK
Sbjct: 281 DRYLCRVNEMRQSVRIMKQCADWLRANPGPVIVENHKVAPPKRTDMKIGMEDLIHHFKLF 340
Query: 246 --GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLA 303
G VP G TYTAVE PKGEFG+Y++SDG +KPYR KI+APGFAHL ++++ +G LA
Sbjct: 341 TEGMHVPEGETYTAVEHPKGEFGIYMISDGANKPYRLKIRAPGFAHLQGIDEMSRGHMLA 400
Query: 304 DIVAII 309
D+VAII
Sbjct: 401 DVVAII 406
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E +TY QALPY DRLDYVSMM NEQ Y LA+EKLL I++P+RAKY
Sbjct: 38 DPHIGLLHRGTEKLAETRTYLQALPYMDRLDYVSMMVNEQAYCLAIEKLLGIDIPVRAKY 97
Query: 370 IRVMFT 375
IR MF
Sbjct: 98 IRTMFA 103
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMVLEL 29
>gi|254487142|ref|ZP_05100347.1| NADH dehydrogenase (quinone), D subunit [Roseobacter sp. GAI101]
gi|214044011|gb|EEB84649.1| NADH dehydrogenase (quinone), D subunit [Roseobacter sp. GAI101]
Length = 408
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 149/289 (51%), Positives = 201/289 (69%), Gaps = 30/289 (10%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEERE +M FYERA GAR+HAAY RP
Sbjct: 111 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREDLMIFYERACGARLHAAYFRP 170
Query: 108 GGVALDIPIGLLDDI----YHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
GGV D+P LLDDI + F+S F +D+ +LTENR++ QR D+GIV+ +D +
Sbjct: 171 GGVHQDLPPALLDDIEAWSHKFMSGFMVDIDK---LLTENRIFKQRNADIGIVTEQDIQD 227
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSGVM+RGSG+ WDLR+ QPY+ Y+ F+F IP G +G+ ++ M+EMRQS+ I++
Sbjct: 228 WGFSGVMVRGSGLAWDLRRAQPYECYDEFDFQIPTGVNGDCYDRYLVRMEEMRQSIFIIQ 287
Query: 219 QAINKMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEA 260
QAI K+ E + D + KI+ PSRS MK G+ VP G Y AVEA
Sbjct: 288 QAITKLREPEGQGDILARGKITPPSRSAMKTDMESLIHHFKLYTEGFHVPAGEVYCAVEA 347
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLV+DG++KPYR KI+APG+ HL A++ + KG LAD+ AII
Sbjct: 348 PKGEFGVYLVADGSNKPYRAKIRAPGYLHLQAMDYMAKGHQLADVAAII 396
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 44 GEVVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 104 VPRRASLIRVLYS 116
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRLVLEL 42
>gi|393725297|ref|ZP_10345224.1| NADH dehydrogenase subunit D [Sphingomonas sp. PAMC 26605]
Length = 411
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 141/286 (49%), Positives = 194/286 (67%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G+H +DVGAMTP WLFE RE M F+ER SGARMH+AY
Sbjct: 114 AQYLRVLFAELTRISNHMLNLGSHVMDVGAMTPNLWLFEIREDCMNFFERVSGARMHSAY 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D P+ LL DI ++ T RL ++ ++ +NR++ QR D+ VS +DA+
Sbjct: 174 FRPGGVHQDAPLKLLTDIADWLDTRLPRLFEDAISLVADNRIFKQRNVDIATVSRDDAIK 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+RGSGI WDLRK QPYD Y+ +FD+P+GT G+ ++ ++E+RQS RI++
Sbjct: 234 WGFSGPMIRGSGIAWDLRKSQPYDVYDRMDFDVPVGTRGDCYDRFMVRVEEVRQSARIMK 293
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + +MP G + + D K+ P R+EMK G+ VP G Y A E+PKG
Sbjct: 294 QCLGEMPEGPIASLDRKVVPPKRAEMKRSMEALIHHFKLYTEGFHVPAGDVYVATESPKG 353
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPYRCKI+ F+HL A++ + KG LAD AI+
Sbjct: 354 EFGVYLVADGTNKPYRCKIRPTAFSHLQAMDFMSKGHMLADTTAIL 399
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S +C E Y LAVEKLL++E
Sbjct: 50 GEIVERVDPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYCSPLCMEHSYVLAVEKLLDLE 109
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 110 VPLRAQYLRVLFA 122
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N INFGPQHPAAHGVL L E+
Sbjct: 23 EIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|421597419|ref|ZP_16041043.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. CCGE-LA001]
gi|404270478|gb|EJZ34534.1| NADH dehydrogenase subunit D [Bradyrhizobium sp. CCGE-LA001]
Length = 398
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/286 (51%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L+ EI+RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHA Y RP
Sbjct: 101 IRVLYHEISRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHANYFRP 160
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D+++ +L+ NR++ R D+G V+ + A +GFS
Sbjct: 161 GGVHQDLPPKLIDDIEAWCDPFLRVVDDLDRLLSLNRIFKARNVDIGRVTLDQAWAWGFS 220
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPYD Y +FDIPIG +G+ +I M+EMRQS+RI++Q I
Sbjct: 221 GVMVRGSGAAWDLRKAQPYDCYAEMDFDIPIGRNGDCYDRYLIRMEEMRQSVRIMKQCIE 280
Query: 223 KMP----GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ GG V D K++ P R EMK G+ VP G Y AVEAPKG
Sbjct: 281 KLNSPDGGGPVMVQDNKVAPPRRGEMKRSMEALIHHFKLYTEGFHVPAGEIYVAVEAPKG 340
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDGT+K Y+CKI++PGFAHL A++ + +G LAD+ AI+
Sbjct: 341 EFGVFLVSDGTNKAYKCKIRSPGFAHLQAMDFLCRGHLLADVSAIL 386
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ + E + LA+E+L+ IE
Sbjct: 34 GEVVARVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDYVAPLTQEHAFCLAIERLIGIE 93
Query: 363 VPLRAKYIRVMF 374
VP R + IRV++
Sbjct: 94 VPRRGQLIRVLY 105
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+RN INFGPQHPAAHGVL L E + R+ HI
Sbjct: 7 SLRNFTINFGPQHPAAHGVLRLVLELDGEVVARVDPHI 44
>gi|357026742|ref|ZP_09088835.1| NADH dehydrogenase subunit D [Mesorhizobium amorphae CCNWGS0123]
gi|355541384|gb|EHH10567.1| NADH dehydrogenase subunit D [Mesorhizobium amorphae CCNWGS0123]
Length = 396
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 145/286 (50%), Positives = 194/286 (67%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++E+ RI++HI+ V T A+DVGA+TP W F EREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLYSEMGRIMSHILNVTTQAMDVGALTPPLWGFVEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +I F +D+++ +LT NR++ QR D+ VS DA +GFS
Sbjct: 159 GGVHQDLPQKLVEDIGKWIDPFLKSIDDLDALLTGNRIFKQRNVDIATVSLADAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIPIG +G+ ++ M+EMRQS +I+ Q ++
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYSEMDFDIPIGKNGDCFDRYLVRMEEMRQSAKIMRQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+ G G V D K+ P R MK GY VP G Y AVEAPKG
Sbjct: 279 LLLGKEGTGPVSNLDGKVVPPKRQAMKRSMEALIHHFKLYTEGYRVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCK++APGFAHL A++ + +G LAD+ A++
Sbjct: 339 EFGVYLVSDGTNKPYRCKLRAPGFAHLQAMDFLCRGHMLADVTAVL 384
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QA+PY DRLDY + M E ++LAVE+LL IE
Sbjct: 32 GEVVDRVDPHIGLLHRGTEKLIEHKTYLQAVPYLDRLDYCAPMNQEHAFALAVERLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 92 VPKRGQLIRVLYS 104
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 ETSVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|117926906|ref|YP_867523.1| NADH dehydrogenase subunit D [Magnetococcus marinus MC-1]
gi|218534430|sp|A0LDS4.1|NUOD_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|117610662|gb|ABK46117.1| NADH dehydrogenase subunit D [Magnetococcus marinus MC-1]
Length = 397
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 137/285 (48%), Positives = 191/285 (67%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++AEITR +NH++ H LDVGAMT F + F ERE++M+ YE A GARMHA Y
Sbjct: 101 AQYIRTIYAEITRFINHLLFFAAHGLDVGAMTMFLYCFREREELMDIYEAACGARMHANY 160
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GL I F + F ++LDE E +LT NR+W QR D+G VS EDA ++
Sbjct: 161 FRPGGVARDLPDGLEQRIRDFCNHFPSKLDEYETLLTNNRIWKQRLVDIGKVSQEDAFSW 220
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GF+G MLRGSG+ +DLRK +PYD Y+ EFDIP+G +G+ ++ ++E R+ ++I++Q
Sbjct: 221 GFTGPMLRGSGVAFDLRKAEPYDAYDRVEFDIPVGKNGDSYDRYLVRIEECREGVKIIQQ 280
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+++M G VR D+ KIS P R +M+ G+ +P G Y AVE PKGE
Sbjct: 281 CLDQMQPGPVRNDNFKISMPYRQDMQQDMESMIHHFKLCTEGFNLPAGEVYAAVETPKGE 340
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDG +KPYR +I+A GF HL A++++ +G +AD+ II
Sbjct: 341 LGVYLVSDGGNKPYRARIRAAGFNHLQAVKEMARGHMIADVTTII 385
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKL+E KTY Q PYFDRLDY+SMM E + +AVE+L IE
Sbjct: 37 GEVVERADPHVGLLHRGTEKLLEQKTYIQGTPYFDRLDYMSMMSEEHAWVIAVERLGQIE 96
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIR ++
Sbjct: 97 VPERAQYIRTIYA 109
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K+ +N INFGPQHPAAHGVL L E+
Sbjct: 9 KEFQNYAINFGPQHPAAHGVLRLLLEL 35
>gi|310816713|ref|YP_003964677.1| NADH dehydrogenase I subunit D [Ketogulonicigenium vulgare Y25]
gi|385234316|ref|YP_005795658.1| NADH dehydrogenase (ubiquinone) Fe-S prote in 2, 49kDa
[Ketogulonicigenium vulgare WSH-001]
gi|308755448|gb|ADO43377.1| NADH dehydrogenase I, D subunit [Ketogulonicigenium vulgare Y25]
gi|343463227|gb|AEM41662.1| NADH dehydrogenase (ubiquinone) Fe-S prote in 2, 49kDa
[Ketogulonicigenium vulgare WSH-001]
Length = 404
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 195/284 (68%), Gaps = 23/284 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI R+LNH+M V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 110 IRVLFCEIGRVLNHLMNVTTGAMDVGALTPPLWGFEEREKLMLFYERACGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ DI + F LDE+ +L E+R++ QR D+G +SA++A+ GFS
Sbjct: 170 GGVHQDLPPDLIADIDAWAIGFPQFLDELSGLLVESRIFKQRLVDIGNISADEAIAMGFS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG++WDLR+ QPY+ Y+ FEFDIP+GT G+ + + EM +S +I+ QA
Sbjct: 230 GVMVRGSGLEWDLRRAQPYECYDEFEFDIPVGTKGDCYDRFLCRVAEMHESTKIIRQACE 289
Query: 223 KMPG--GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ GEV K++ P R+EMK G+ +P G Y AVEAPKGEF
Sbjct: 290 KLRNCPGEVMAYG-KLAPPKRAEMKTSMEALIHHFKLYSEGFHLPAGEVYAAVEAPKGEF 348
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDG++KPYR K++APGFAHL A++ + KG LAD+ AII
Sbjct: 349 GVYLVSDGSNKPYRAKLRAPGFAHLQAMDHMTKGHLLADVTAII 392
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 53/73 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKL+E +TY Q LPY DRLDYV+ M E + LA+E+L IE
Sbjct: 43 GEIVERCDPHVGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLAGIE 102
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+F
Sbjct: 103 VPRRASLIRVLFC 115
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
+++RN INFGPQHPAAHGVL L E+
Sbjct: 15 EKVRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|78485165|ref|YP_391090.1| NADH dehydrogenase subunit D [Thiomicrospira crunogena XCL-2]
gi|123555685|sp|Q31HF7.1|NUOD_THICR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|78363451|gb|ABB41416.1| NADH dehydrogenase chain D [Thiomicrospira crunogena XCL-2]
Length = 417
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 197/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +G HALD+GAMT F + F ERE +M+ YE SGARMHA Y
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGAHALDIGAMTVFLYAFREREDLMDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMAKYEESKWHSGKKLDQLNETREGSLLDFIEAFTERFPGYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT D+GIVS E AL GF+G MLRGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVDIGIVSPERALQLGFTGPMLRGSGIAWDLRKKQPYEVYDKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ + EMR+S +I++Q + K G V +DD K++ PSR + K
Sbjct: 274 ATGDCYDRYLVRVAEMRESNKIIKQCVKWLKENPGPVISDDHKVTPPSREDAKSNMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G +YTAVE PKGEFG+Y+VSDG +KPYR K++APGFAHLA+L+++
Sbjct: 334 HHFKLFTEGYSVPEGESYTAVEHPKGEFGIYMVSDGANKPYRLKVRAPGFAHLASLDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD+VAII
Sbjct: 394 KGHMIADVVAII 405
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 53/65 (81%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL EYK + Q++ Y DRLDYVSMM NE Y + +EK+L IEVP RA+Y
Sbjct: 37 DPHIGLLHRGTEKLAEYKPFNQSIGYMDRLDYVSMMANEHAYVMGIEKMLGIEVPERAQY 96
Query: 370 IRVMF 374
IRVMF
Sbjct: 97 IRVMF 101
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLEL 28
>gi|115524530|ref|YP_781441.1| NADH dehydrogenase subunit D [Rhodopseudomonas palustris BisA53]
gi|122296211|sp|Q07NM3.1|NUOD_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115518477|gb|ABJ06461.1| NADH dehydrogenase I, D subunit [Rhodopseudomonas palustris BisA53]
Length = 396
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 198/289 (68%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERASG+RMHAAY
Sbjct: 96 AQLIRVLYCEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGSRMHAAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L++DI + F +D+++ +LT NR++ QR D+G+V+ A +
Sbjct: 156 FRIGGVHQDLPPQLIEDIETWCDAFPQVVDDLDRLLTGNRIFKQRNVDIGVVTLPQAWEW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLRK QPY+ Y +FD+PIG +G+ ++ M+EMRQS+ I++Q
Sbjct: 216 GFSGVMVRGSGAAWDLRKSQPYECYAEMDFDVPIGKNGDCYDRYLLRMEEMRQSVSIMKQ 275
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
I K+ P G+ V +D KI P R EMK G+ VP G Y AVEA
Sbjct: 276 CIAKLRAPDGQGPVALEDHKIVPPRRGEMKRSMEALIHHFKLYTEGFRVPAGEVYVAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGV+LVSDGT+KPY+CKI+APGFAHL A++ + +G LAD+ AI+
Sbjct: 336 PKGEFGVFLVSDGTNKPYKCKIRAPGFAHLQAMDFVTRGHLLADVSAIL 384
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E + LA EKLL I
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEQKTYLQAIPYFDRLDYVAPMNQEHAFCLAAEKLLGIA 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV++
Sbjct: 92 VPRRAQLIRVLYC 104
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 EGALRNFTINFGPQHPAAHGVLRLVLEL 30
>gi|126736068|ref|ZP_01751812.1| NADH dehydrogenase I, D subunit [Roseobacter sp. CCS2]
gi|126714625|gb|EBA11492.1| NADH dehydrogenase I, D subunit [Roseobacter sp. CCS2]
Length = 412
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 197/284 (69%), Gaps = 23/284 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 118 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHAAYFRP 177
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F LD+++ +LTENR++ QR D+GIV+ ED ++GFS
Sbjct: 178 GGVHQDLPDQLVEDIDTWAIEFPKVLDDIDGLLTENRIFKQRNADIGIVTEEDIQDWGFS 237
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ FEF +P+G +G+ + M+EMRQS I+ QA
Sbjct: 238 GVMVRGSGLAWDLRRAQPYECYDEFEFQVPVGKNGDCYDRYLCRMEEMRQSTHIIRQACE 297
Query: 223 KM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G+V K++ P+R EMK G+ VP G Y AVEAPKGEF
Sbjct: 298 KLRHEKGDVMARG-KMTPPTRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEF 356
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLV+DGT++PYR K++APG+ HL A++ I KG LAD+ AII
Sbjct: 357 GVYLVADGTNQPYRAKLRAPGYLHLQAMDYICKGHQLADVSAII 400
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 53/73 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPY DRLDYV+ M E + LA+E+L E
Sbjct: 51 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLTGTE 110
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 111 VPRRASLIRVLYS 123
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+QIRN INFGPQHPAAHGVL L E+
Sbjct: 22 EQQIRNFNINFGPQHPAAHGVLRLVLEL 49
>gi|339484294|ref|YP_004696080.1| NAD(P)H-quinone oxidoreductase subunit H [Nitrosomonas sp. Is79A3]
gi|338806439|gb|AEJ02681.1| NAD(P)H-quinone oxidoreductase subunit H [Nitrosomonas sp. Is79A3]
Length = 417
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 152/313 (48%), Positives = 202/313 (64%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +G HALDVGAMT F + F ERE +M+ YE SGAR+HAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLWIGAHALDVGAMTMFLYAFREREDLMDCYEAVSGARLHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYQSSKIHNQKQTRLRNANREGSLLDFIEDFTNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR D+GIVS E A GF+G MLRGSG++WDLR+ QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVDIGIVSPERAKALGFTGPMLRGSGVEWDLRRKQPYEVYDRMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ M+E RQS RI++Q ++ K P G V TD+ KI+ PSR +MK
Sbjct: 274 VNGDCYDRYLVRMEEFRQSNRIIKQCVDWLRKNP-GPVITDNHKIAPPSRVDMKQNMEEM 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ +PPG TY AVE PKGEFG+YLVS+G +KPYR KI+APGFAHLAAL+++
Sbjct: 333 IHHFKLFTEGFHIPPGETYAAVEHPKGEFGIYLVSNGANKPYRLKIRAPGFAHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
+G ++D+VAII
Sbjct: 393 SRGHMISDVVAII 405
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHR TEKL E KTY Q++PY DRLDYVSMM NE Y +A+EKLL +E
Sbjct: 30 GEVVLRADPHIGLLHRATEKLAENKTYIQSVPYMDRLDYVSMMANEHAYVMAIEKLLQVE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|325267317|ref|ZP_08133979.1| NADH-quinone oxidoreductase subunit D [Kingella denitrificans ATCC
33394]
gi|324981254|gb|EGC16904.1| NADH-quinone oxidoreductase subunit D [Kingella denitrificans ATCC
33394]
Length = 418
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 196/307 (63%), Gaps = 48/307 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNH+M VG+HALD+GAMT + F +RE++M+ YE SGARMHAAY R GGV
Sbjct: 100 MFAEVTRILNHLMGVGSHALDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRIGGV 159
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P +LD I F F +D +E +LT+NR+
Sbjct: 160 YRDLPDFMPKYEKSKFRSAKVLKELNASREGTMLDFIDAFCERFPKNIDTLETLLTDNRI 219
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VS E AL GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G +G+
Sbjct: 220 WKQRTVGIGVVSPERALQKGFTGVMLRGSGVEWDVRKKQPYEVYDQIDFDIPVGVNGDCY 279
Query: 204 ---VIGMKEMRQSLRIVEQA---INKMPGGEVRTDDMKISTPSRSEMK------------ 245
+ M EMRQS+RI++Q + PG V TD+ K++ P R+EMK
Sbjct: 280 DRYLCRMAEMRQSVRIIKQCADWLRANPGLPVITDNHKVAPPKRTEMKQGMEDLIHHFKL 339
Query: 246 ---GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFL 302
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++ +G L
Sbjct: 340 FTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMARGHLL 399
Query: 303 ADIVAII 309
AD+VAII
Sbjct: 400 ADVVAII 406
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKLL +E+P+RAKY
Sbjct: 37 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLLGLEIPIRAKY 96
Query: 370 IRVMFT 375
IR MF
Sbjct: 97 IRTMFA 102
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 KLRNYTINFGPQHPAAHGVLRMILEL 28
>gi|272886794|gb|ACZ96472.1| NADH dehydrogenase subunit 7 [Didymium iridis]
gi|272886796|gb|ACZ96473.1| NADH dehydrogenase subunit 7 [Didymium iridis]
Length = 400
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 192/286 (67%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMH AY
Sbjct: 103 ARSIRILFLEITRILNHLLAITTHAMDVGALTPFLWAFEEREKLIEFYERVSGARMHTAY 162
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GLL DI+ F+ FS +L ++E++L ENR++ R ++G+V ++
Sbjct: 163 IRPGGVAFDLPLGLLKDIHDFLLPFSRKLTDIEELLNENRIFKDRVLNIGVVPYNVVKDH 222
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
F+GVM RGSGI +DLR+V Y+ Y +++F IP+G+ G+ +I + EMR+S +I+ Q
Sbjct: 223 AFTGVMARGSGIPYDLRRVYNYENYNDYDFKIPVGSAGDCYDRFLIRVAEMRESCKIIAQ 282
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ G + K + PSR+ MK G +P G Y +VEAPKGE
Sbjct: 283 VCCKITKGPISVSFGKFANPSRALMKHQMEALIHHFKFFSNGIVMPEGTVYVSVEAPKGE 342
Query: 265 FGVYLVS-DGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FG LVS +KPYRC I+APGF HL A+ ++ + LAD+VAII
Sbjct: 343 FGTLLVSYQNNTKPYRCHIRAPGFHHLGAINRVSQNHSLADVVAII 388
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 10/82 (12%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLN-- 360
+++ DPHIGLLHRGTEKLIE+K + Q+LPYFDRLDYVSMM E YS+AVE L N
Sbjct: 29 GEVIQNCDPHIGLLHRGTEKLIEHKNFLQSLPYFDRLDYVSMMAQEHAYSMAVETLFNDV 88
Query: 361 --------IEVPLRAKYIRVMF 374
IE+P RA+ IR++F
Sbjct: 89 YAKALLPTIEIPSRARSIRILF 110
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEIT 56
+I+N +INFGPQHPAAHGVL + E+
Sbjct: 2 KIKNYLINFGPQHPAAHGVLRMVVELN 28
>gi|395766610|ref|ZP_10447149.1| NADH-quinone oxidoreductase subunit D [Bartonella doshiae NCTC
12862]
gi|395415734|gb|EJF82161.1| NADH-quinone oxidoreductase subunit D [Bartonella doshiae NCTC
12862]
Length = 396
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 143/286 (50%), Positives = 195/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FE+RE++M FYERA GAR+HA Y RP
Sbjct: 99 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEQRERLMIFYERACGARLHANYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI +FI F L +++ ++T NR++ QR D+G+VS ++A GFS
Sbjct: 159 GGVHQDLPESLIEDIGNFIDPFLVALGKLDALVTPNRIFKQRNVDIGVVSIDEAWARGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RG+G+ WDLRK Q Y+ Y+ EFDIP+G + + +I M+EMRQS +I+ Q ++
Sbjct: 219 GVMIRGAGVPWDLRKSQSYECYDEMEFDIPVGKNSDCYDRYLIRMEEMRQSAKIMRQCVD 278
Query: 223 KM----PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G V + D KI P R EMK G+ PPG Y AVEAPKG
Sbjct: 279 RLLSTEKNGPVSSLDRKIVPPKRGEMKSSMEALIHHFKLYTEGFHTPPGEVYVAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYR K++APGFAHL A++ + +G LAD AI+
Sbjct: 339 EFGVYLVSDGTNKPYRVKLRAPGFAHLQAMDFLTRGHMLADATAIL 384
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKL+E KTY QA PY DRLDYV+ M E + LA+EKLL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLMETKTYLQAGPYLDRLDYVAPMNQEHAFVLAIEKLLGVE 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPKRGQLIRVLFS 104
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL + E+
Sbjct: 3 EVNVRNFNINFGPQHPAAHGVLRMVLEL 30
>gi|261364350|ref|ZP_05977233.1| NADH dehydrogenase, D subunit [Neisseria mucosa ATCC 25996]
gi|288567614|gb|EFC89174.1| NADH dehydrogenase, D subunit [Neisseria mucosa ATCC 25996]
Length = 418
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 200/312 (64%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLQQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDQMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCVDWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|395493001|ref|ZP_10424580.1| NADH dehydrogenase subunit D [Sphingomonas sp. PAMC 26617]
Length = 411
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 140/286 (48%), Positives = 193/286 (67%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G+H +DVGAMTP WLFE RE M F+ER SGARMH+AY
Sbjct: 114 AQYLRVLFAELTRISNHMLNLGSHVMDVGAMTPNLWLFEIREDCMNFFERVSGARMHSAY 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D P+ LL D+ ++ T RL ++ ++ +NR++ QR D+ VS +DA+
Sbjct: 174 FRPGGVHQDAPLKLLADLADWLDTRLPRLFEDAISLVADNRIFKQRNVDIATVSRDDAIK 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+RGSGI WDLRK QPYD Y+ EFD+P+GT G+ ++ ++E+RQS +I++
Sbjct: 234 WGFSGPMIRGSGIAWDLRKSQPYDVYDRMEFDVPVGTRGDCYDRFMVRVEEVRQSAKIMK 293
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + MP G + + D K+ P R+EMK G+ VP G Y A E+PKG
Sbjct: 294 QCLRDMPEGPIASLDRKVVPPKRAEMKRSMEALIHHFKLYTEGFHVPAGDVYVATESPKG 353
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPYRCKI+ F+HL A++ + KG LAD AI+
Sbjct: 354 EFGVYLVADGTNKPYRCKIRPTAFSHLQAMDFMSKGHMLADTTAIL 399
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S +C E Y LAVEKLL++E
Sbjct: 50 GEIVERVDPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYCSPLCMEHTYVLAVEKLLDLE 109
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 110 VPLRAQYLRVLFA 122
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N INFGPQHPAAHGVL L E+
Sbjct: 23 EIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|153871540|ref|ZP_02000686.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Beggiatoa sp. PS]
gi|152071989|gb|EDN69309.1| NADH-ubiquinone oxidoreductase, chain 49kDa [Beggiatoa sp. PS]
Length = 417
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 154/313 (49%), Positives = 198/313 (63%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +G H LDVGAMT F + F ERE +M+ YE SGAR+HAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLWIGAHGLDVGAMTIFLYAFREREDLMDCYEAVSGARLHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYEKSQYRNKDDVKRLNENREGSLLDFIEDFTNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LTENR+W QRT +G+V+ E A N GFSG MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTENRIWRQRTVGIGVVTPERAQNLGFSGPMLRGSGIEWDLRKKQPYEVYDKVDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ M+E RQS RI++Q ++ K P G V DD KI+ P R MK
Sbjct: 274 VNGDCYDRYLVRMEEFRQSNRIIKQCVDWLRKNP-GPVMVDDHKITPPPRENMKGGMESL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
GY VP G Y+A+E PKGEFG+YLVSDG +KPYR KI+APGFAHLAA++++
Sbjct: 333 IHHFKLFTEGYCVPEGEVYSAIEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLAAMDEM 392
Query: 297 GKGSFLADIVAII 309
KG +AD+VAII
Sbjct: 393 AKGHMIADVVAII 405
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E K + Q++PY DRLDYVSMMCNE Y +A+EKLL I
Sbjct: 30 GEVVERADPHIGLLHRGTEKLAETKPFNQSVPYMDRLDYVSMMCNEHAYVMAIEKLLGIT 89
Query: 363 VPLRAKYIRVMF 374
P+RA+YIRVMF
Sbjct: 90 PPIRAQYIRVMF 101
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|404253327|ref|ZP_10957295.1| NADH dehydrogenase subunit D [Sphingomonas sp. PAMC 26621]
Length = 411
Score = 287 bits (734), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 140/286 (48%), Positives = 193/286 (67%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G+H +DVGAMTP WLFE RE M F+ER SGARMH+AY
Sbjct: 114 AQYLRVLFAELTRISNHMLNLGSHVMDVGAMTPNLWLFEIREDCMNFFERVSGARMHSAY 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D P+ LL D+ ++ T RL ++ ++ +NR++ QR D+ VS +DA+
Sbjct: 174 FRPGGVHQDAPLKLLADLADWLDTRLPRLFEDAISLVADNRIFKQRNVDIATVSRDDAIK 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+RGSGI WDLRK QPYD Y+ EFD+P+GT G+ ++ ++E+RQS +I++
Sbjct: 234 WGFSGPMIRGSGIAWDLRKSQPYDVYDRMEFDVPVGTRGDCYDRFMVRVEEVRQSAKIMK 293
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + MP G + + D K+ P R+EMK G+ VP G Y A E+PKG
Sbjct: 294 QCLRDMPEGPIASLDRKVVPPKRAEMKRSMEALIHHFKLYTEGFHVPAGDVYVATESPKG 353
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLV+DGT+KPYRCKI+ F+HL A++ + KG LAD AI+
Sbjct: 354 EFGVYLVADGTNKPYRCKIRPTAFSHLQAMDFMSKGHMLADTTAIL 399
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S +C E Y LAVEKLL++E
Sbjct: 50 GEIVERVDPHVGLLHRGTEKLIEYKTYMQALPYFDRLDYCSPLCMEHTYVLAVEKLLDLE 109
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 110 VPLRAQYLRVLFA 122
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N INFGPQHPAAHGVL L E+
Sbjct: 23 EIQNYTINFGPQHPAAHGVLRLVMEL 48
>gi|347528702|ref|YP_004835449.1| NADH-quinone oxidoreductase subunit D [Sphingobium sp. SYK-6]
gi|345137383|dbj|BAK66992.1| NADH-quinone oxidoreductase chain D [Sphingobium sp. SYK-6]
Length = 411
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 139/286 (48%), Positives = 193/286 (67%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + + FAE+TRI NH++ +G+H +DVGAMTP W+FE RE + F+ERASGARMH+AY
Sbjct: 114 AQYLRVFFAELTRICNHMLNLGSHVMDVGAMTPNLWMFEIREDCLNFFERASGARMHSAY 173
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ RL ++ ++ +NR++ QR D+ + S EDAL
Sbjct: 174 FRPGGVHQDVPLKLLTDIGDWLDNRLPRLFEDAISLVADNRIFKQRNVDIAVCSKEDALK 233
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+RGSGI WD+RK QPYD Y+ EFD+P+GT+ + ++ ++E+RQS RI+
Sbjct: 234 WGFSGPMIRGSGIPWDIRKAQPYDVYDRMEFDVPVGTNYDCYDRFMVRVEEVRQSARIMR 293
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q +N+MP G V + D K+ P R EMK G+ VP G Y A E+PKG
Sbjct: 294 QCLNEMPEGPVASFDRKVVPPKRGEMKQSMEALIHHFKLYTEGFHVPEGEVYVATESPKG 353
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+ F+HL A++ + KG LAD A++
Sbjct: 354 EFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFLMKGHMLADTTAVL 399
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S + E Y LA+EKLLN+E
Sbjct: 50 GEIVERCDPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYCSPLGMEHSYVLAIEKLLNLE 109
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV F
Sbjct: 110 VPLRAQYLRVFFA 122
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 26 PVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
P + I+N INFGPQHPAAHGVL L E+
Sbjct: 19 PGDTAIQNYTINFGPQHPAAHGVLRLVMEM 48
>gi|421562463|ref|ZP_16008290.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM2795]
gi|421907558|ref|ZP_16337433.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha704]
gi|393291227|emb|CCI73427.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha704]
gi|402343119|gb|EJU78274.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM2795]
Length = 418
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 200/312 (64%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVTPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCVDWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|304391402|ref|ZP_07373344.1| NADH dehydrogenase (quinone), d subunit [Ahrensia sp. R2A130]
gi|303295631|gb|EFL89989.1| NADH dehydrogenase (quinone), d subunit [Ahrensia sp. R2A130]
Length = 396
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 195/289 (67%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L++EI RIL+HI+ V T ALDVGA TP W FEEREK+M FYERA GAR+H+AY
Sbjct: 96 AQLIRVLYSEIGRILSHILNVTTQALDVGAFTPSLWGFEEREKLMVFYERACGARLHSAY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P L++DI + F +D++E +LT+NR++ QR D+GI+S EDA
Sbjct: 156 FRPGGVHQDLPKALVEDIQSWCEQFPKVIDDIEALLTDNRIFKQRNVDIGIISLEDAWAR 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG WDLR+ QPY+ Y+ EFDIP+G + + VI M EMR+S +I+ Q
Sbjct: 216 GFSGVMVRGSGAAWDLRRAQPYECYDEMEFDIPVGKNCDNYDRYVIRMLEMRESTKIMAQ 275
Query: 220 AINKM--PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
K+ P G+ + + D K P R +MK G+ VP G Y AVEA
Sbjct: 276 CCEKLLAPEGQGPIASPDGKAVPPKRGDMKKSMEALIHHFKLYTEGFHVPEGEVYCAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVSDG++KPYR K++APGF+HL A++ + KG LAD+ A++
Sbjct: 336 PKGEFGVYLVSDGSNKPYRVKLRAPGFSHLQAMDYMCKGHMLADVGAVL 384
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYV+ M E + A+EK+L++E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVAPMNQEHAWCRAIEKMLDLE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+ IRV+++
Sbjct: 92 VPRRAQLIRVLYS 104
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 3 EVDIRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|433774175|ref|YP_007304642.1| NADH dehydrogenase I, D subunit [Mesorhizobium australicum WSM2073]
gi|433666190|gb|AGB45266.1| NADH dehydrogenase I, D subunit [Mesorhizobium australicum WSM2073]
Length = 395
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 141/285 (49%), Positives = 195/285 (68%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI+RIL+H++ V T A+DVGA+TP W F EREK+M FYERASG+RMHAAY RP
Sbjct: 99 IRVLFSEISRILSHLLNVTTQAMDVGALTPPLWGFVEREKLMVFYERASGSRMHAAYFRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+ D+ ++I F +D+++ +LT+NR++ R D+G +S DA +GFS
Sbjct: 159 GGVHQDLPPDLITDVGNWIDPFRKTVDDLDRLLTDNRIFKLRNVDIGQISQSDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIP+G +G+ ++ M+EMRQS +I+ Q I+
Sbjct: 219 GVMVRGSGAAWDLRKSQPYECYAEMDFDIPVGRNGDCFDRYLVRMEEMRQSAKIMRQCID 278
Query: 223 KMPG---GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ G V +D K+ P R+ MK G+ VP G Y AVEAPKGE
Sbjct: 279 LLASEGPGPVSNNDGKVVPPRRAAMKRSMEALIHHFKLYTEGFRVPAGEVYAAVEAPKGE 338
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYRCK++ P FAHL A++ + +G LAD+ AI+
Sbjct: 339 FGVYLVADGTNKPYRCKLRPPSFAHLQAMDLLCRGHMLADVTAIL 383
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIE KTY QALPYFDRLDYV+ M E + LA+EKL+ +
Sbjct: 32 GEVVDRVDPHIGLLHRGTEKLIETKTYLQALPYFDRLDYVAPMSQEHAWCLAIEKLMGLA 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F+
Sbjct: 92 VPRRGQLIRVLFS 104
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHPAAHGVL L E+
Sbjct: 3 ENSVRNFNINFGPQHPAAHGVLRLVLEL 30
>gi|114800277|ref|YP_760449.1| NADH dehydrogenase subunit D [Hyphomonas neptunium ATCC 15444]
gi|123028033|sp|Q0C1E4.1|NUOD_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|114740451|gb|ABI78576.1| NADH-quinone oxidoreductase, D subunit [Hyphomonas neptunium ATCC
15444]
Length = 392
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 194/285 (68%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++++EI RI++H++ VGT +DVGA+TP W FEEREK+ FYERASG+RMHAAY RP
Sbjct: 96 IRVMYSEIGRIMSHLLNVGTGVMDVGALTPITWCFEEREKLCVFYERASGSRMHAAYFRP 155
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +LD++E ++TENR++ QR D+G+V L++GFS
Sbjct: 156 GGVHQDLPQRLIDDIATWCDQFPGKLDQIEGLVTENRIFKQRNVDIGVVDQRTILDWGFS 215
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y +F +P+G HG+ V M EMR+S++I+ Q I+
Sbjct: 216 GVMVRGSGLAWDLRRSQPYECYSELDFKVPVGRHGDNYDRYVCRMDEMRESVKIILQCID 275
Query: 223 KMPG---GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
M G V K+S P R++MK G+ VP G Y AVEAPKGE
Sbjct: 276 LMAKDGPGPVLLAGSKLSPPRRADMKNSMEALIHHFKLYTEGFHVPEGECYAAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT++PYR KI+APG+ HL A++ + KG LAD+ A++
Sbjct: 336 FGVYLVADGTNRPYRAKIRAPGYPHLQAMDYLCKGHQLADVSAVL 380
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +D HIGLLHRGTEKL+EYKTY Q +PYFDRLDY + M E + LA+EKLL +E
Sbjct: 29 GEIVTRVDSHIGLLHRGTEKLLEYKTYLQGMPYFDRLDYCAPMNQEHAWCLAIEKLLGVE 88
Query: 363 VPLRAKYIRVMFT 375
VP RA IRVM++
Sbjct: 89 VPRRASIIRVMYS 101
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
R +NFGPQHPAAHGVL + + +TR+ +HI
Sbjct: 4 RKFTLNFGPQHPAAHGVLRMILDLDGEIVTRVDSHI 39
>gi|421560399|ref|ZP_16006258.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM2657]
gi|254670956|emb|CBA07624.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha153]
gi|402340572|gb|EJU75772.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM2657]
Length = 418
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 200/312 (64%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCVDWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|406925515|gb|EKD61969.1| hypothetical protein ACD_54C00002G0002 [uncultured bacterium]
Length = 293
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 192/284 (67%), Gaps = 27/284 (9%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+L++EI RILNH++ T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RPGG
Sbjct: 1 MLYSEIGRILNHLLNTTTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAYFRPGG 60
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
V D+ LL+DI + TF LD++ +LTENR++ QR D+G+V+ ED YGFSGV
Sbjct: 61 VHQDLTDDLLNDIEAWSHTFPKVLDDLHGLLTENRIFKQRNADIGVVTEEDIQAYGFSGV 120
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
M+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M+EM QS+ I+ Q I K+
Sbjct: 121 MVRGSGLAWDLRRSQPYECYDEFDFQIPVGKNGDCYDRYLCRMEEMTQSISIIRQCIAKL 180
Query: 225 PGGEVRTDDM----KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
V D+ K++ P R EMK G+ VP G Y AVEAPKGEF
Sbjct: 181 ---RVEKGDVLARGKLTPPKRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEF 237
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYL +DG++KPYR KI+APGF HL A++ I KG LAD+ AII
Sbjct: 238 GVYLKADGSNKPYRAKIRAPGFLHLQAMDYICKGHQLADVSAII 281
>gi|292493665|ref|YP_003529104.1| NADH dehydrogenase I subunit D [Nitrosococcus halophilus Nc4]
gi|291582260|gb|ADE16717.1| NADH dehydrogenase I, D subunit [Nitrosococcus halophilus Nc4]
Length = 417
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 151/313 (48%), Positives = 199/313 (63%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +G H LD+GAMT F + F ERE +M+ YE ASGARMHA Y
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGAHGLDIGAMTVFLYCFREREDLMDCYEAASGARMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYQPSKWHDEKEIAALNQNRQGSLLDFIEDFAARFPRCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V E AL GF+G MLRGSG++WDLRK QPY Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVEPERALQLGFTGPMLRGSGVEWDLRKKQPYAVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ M+EMRQS RI++Q ++ K P G V D+ K++ PSR +MK
Sbjct: 274 VNGDCYDRYLVRMEEMRQSNRIIQQCVDWLRKNP-GPVMVDNYKVAPPSREDMKDDMEAL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
GY VP G Y AVEAPKGEFGVYL+SDG +KPYR K++APGFAH+AA++++
Sbjct: 333 IHHFKLFTEGYCVPEGEVYAAVEAPKGEFGVYLISDGANKPYRLKVRAPGFAHIAAMDEM 392
Query: 297 GKGSFLADIVAII 309
+G LAD+VA+I
Sbjct: 393 VQGHMLADVVAVI 405
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 55/72 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPH+GLLHR TEKL E K + Q++ Y DRLDYVSMMCNE Y A+EKLL IE
Sbjct: 30 GEVIQRADPHVGLLHRATEKLAESKPFNQSIGYMDRLDYVSMMCNEHGYVSAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
PLRA+YIRVMF
Sbjct: 90 PPLRAQYIRVMF 101
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNFTLNFGPQHPAAHGVLRLVLEM 28
>gi|337267105|ref|YP_004611160.1| NADH dehydrogenase I subunit D [Mesorhizobium opportunistum
WSM2075]
gi|336027415|gb|AEH87066.1| NADH dehydrogenase I, D subunit [Mesorhizobium opportunistum
WSM2075]
Length = 396
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI R+L+H++ V T A+D+GA+TP W F EREK+M FYERASGARMHA Y R
Sbjct: 99 IRVLFCEIGRLLSHLLNVTTQAMDIGALTPPLWGFAEREKLMVFYERASGARMHANYFRI 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI+ F F + ++D+LT +R++ QR DVG +S +DA +GFS
Sbjct: 159 GGVHQDLPPKLLDDIWAFCDPFLKVCENLDDLLTGSRIFKQRNVDVGAISLDDAWAWGFS 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLRK QPY+ Y +FDIP+G +G+ ++ M+EMRQS+RI++Q ++
Sbjct: 219 GVMVRGSGASWDLRKAQPYECYPEMDFDIPVGKNGDCYDRYLVRMEEMRQSVRIMKQCLD 278
Query: 223 K--MPGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K +P G+ V + KI+ P R+ MK G+ VP G Y AVEAPKG
Sbjct: 279 KLRLPEGQGPVAIPNQKITPPPRARMKRSMEATIQHFKLYTEGHRVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVS+G++ PYRCKI+AP FAHL A++ + +G +AD+ AII
Sbjct: 339 EFGVYLVSNGSNVPYRCKIRAPSFAHLQAMDFLSRGHMIADVAAII 384
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYV+ M E + LA EKLL I
Sbjct: 32 GEIVDRADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVAPMNQEHAFCLAAEKLLEIS 91
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+F
Sbjct: 92 VPRRGQLIRVLFC 104
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGPQHP+AHGVL L E+
Sbjct: 2 AEAAVRNFTINFGPQHPSAHGVLRLVLEL 30
>gi|103486794|ref|YP_616355.1| NADH dehydrogenase subunit D [Sphingopyxis alaskensis RB2256]
gi|98976871|gb|ABF53022.1| NADH dehydrogenase I, D subunit [Sphingopyxis alaskensis RB2256]
Length = 418
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/280 (50%), Positives = 187/280 (66%), Gaps = 21/280 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRI NH++ +G+H +DVGAMTP W+FE RE + F+ERASGARMH+AY RPGGV
Sbjct: 127 MFAELTRICNHMLNIGSHVMDVGAMTPNLWVFELREDCLNFFERASGARMHSAYFRPGGV 186
Query: 111 ALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
D+P LL DI ++ T +L + ++ +NR++ QR D+ VS EDAL +GFSG
Sbjct: 187 HQDVPEKLLVDIGEWVETRLPKLFGDAMSLVIDNRIFKQRNVDIATVSKEDALAWGFSGP 246
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
M+RGSGI WDLRK QPYD Y EFDIP+GT G+ ++ ++E+ QS +I++Q + M
Sbjct: 247 MIRGSGIAWDLRKSQPYDAYAAMEFDIPVGTRGDCYDRFMVRVEEVYQSAKIIKQCLRDM 306
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G + + D K+ P R EMK G+ VP G Y A E+PKGEFGVYL
Sbjct: 307 PTGPIASLDRKVVPPKRGEMKQSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYL 366
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRCKI+ F+HL A++ + KG LAD AII
Sbjct: 367 VSDGTNKPYRCKIRPTAFSHLQAMDMMSKGHMLADTTAII 406
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ +DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S + E Y LA+EKLL++E
Sbjct: 57 GEIIERVDPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYCSPLGMEHSYVLAIEKLLDLE 116
Query: 363 VPLRAKYIRVMFT 375
VP RA+Y+R MF
Sbjct: 117 VPARAQYLRTMFA 129
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ + N INFGPQHPAAHGVL + E+
Sbjct: 28 DQAVTNYTINFGPQHPAAHGVLRMVMEL 55
>gi|372281581|ref|ZP_09517617.1| NADH dehydrogenase subunit D [Oceanicola sp. S124]
Length = 404
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/285 (50%), Positives = 195/285 (68%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI RILNH++ V T A+DVGA+TP W FE RE + FYERASGAR HAAY RP
Sbjct: 110 IRVLFCEIGRILNHLLNVTTQAMDVGALTPPLWGFEPREDLCIFYERASGARFHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+ L+DDI + F A+LD+++ +LTENR++ QR D+G+V+ ++ L++GFS
Sbjct: 170 GGVHQDLTDKLIDDIEEWAIEFPAKLDDIDSLLTENRIFKQRNVDIGVVTEQEILDWGFS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M EMR+S++I+ QAI
Sbjct: 230 GVMVRGSGLPWDLRRAQPYECYDEFDFKIPVGKNGDCYDRYLCRMAEMRESVKIMRQAIV 289
Query: 223 KM---PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ PG + K++ P R EMK G+ VP G Y AVEAPKGE
Sbjct: 290 KLRETPGDVLARG--KLTPPKRGEMKTSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGE 347
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR K++APGF HL A++ + G LAD+ AII
Sbjct: 348 FGVYLVADGTNKPYRAKLRAPGFLHLQAMDHVASGHQLADVAAII 392
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 51/73 (69%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPY DRLDYV+ M E + LA+EKL
Sbjct: 43 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYMDRLDYVAPMNQEHAWCLAIEKLTGTV 102
Query: 363 VPLRAKYIRVMFT 375
+P RA IRV+F
Sbjct: 103 IPRRASLIRVLFC 115
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ E+QIRN INFGPQHPAAHGVL L E+
Sbjct: 8 DDAQTGEQQIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|393771612|ref|ZP_10360081.1| NADH dehydrogenase I subunit D [Novosphingobium sp. Rr 2-17]
gi|392722864|gb|EIZ80260.1| NADH dehydrogenase I subunit D [Novosphingobium sp. Rr 2-17]
Length = 403
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 194/286 (67%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+A+
Sbjct: 106 AQYLRVMFAELTRICNHMLNIGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAW 165
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ T RL ++ ++ +NR++ QR D+ I S ED+L
Sbjct: 166 FRPGGVHQDVPLKLLTDIADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDIAITSKEDSLA 225
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+R +GI WDLRK QPYD Y+ +F+IP+GT+ + ++ ++E+RQS +I++
Sbjct: 226 WGFSGPMIRAAGIAWDLRKSQPYDVYDRMDFEIPVGTNSDCYDRFMVRVEEVRQSAKIMK 285
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + MP G V +DD K+ P R+EMK G+ VP G Y A E+PKG
Sbjct: 286 QCLRDMPEGPVSSDDRKVVPPKRAEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKG 345
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+ F+HL A++ + KG L D AI+
Sbjct: 346 EFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAIL 391
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ IDPH+GLLHRGTEKLIE+KTY QALPYFDRLDY S + E Y LA+EKLLN+E
Sbjct: 42 GEIIERIDPHVGLLHRGTEKLIEHKTYLQALPYFDRLDYCSPLAMEHSYVLAIEKLLNLE 101
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RVMF
Sbjct: 102 VPLRAQYLRVMFA 114
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
++ I N INFGPQHPAAHGVL + E I RI H+
Sbjct: 13 DEVITNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHV 52
>gi|345877978|ref|ZP_08829709.1| NADH-quinone oxidoreductase chain D [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225017|gb|EGV51389.1| NADH-quinone oxidoreductase chain D [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 427
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/312 (49%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M +GTHALDVGAMT F + F ERE +M+ YE SGARMHAAY
Sbjct: 104 AQYIRTMFDEITRILNHLMWLGTHALDVGAMTVFLYAFREREDLMDCYEAVSGARMHAAY 163
Query: 105 VRPGGVALDIP----------------IG---------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +G LLD I F F A +DE E +
Sbjct: 164 YRPGGVYRDLPDQMPQYQQSQWTTGRDVGRRNEARQGSLLDFIGDFADRFPALVDEYETL 223
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E AL GF+G MLRGSG++WDLRK Q Y Y+ +FDIP+G
Sbjct: 224 LTDNRIWKQRTVGIGVVSPERALQLGFTGPMLRGSGVEWDLRKKQSYAAYDKVDFDIPVG 283
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++E+RQS RI++Q + + G V DD KI+ PSRS+MK
Sbjct: 284 VTGDSYDRYLVRIEELRQSNRIIKQCVEWLRNNPGPVMVDDHKIAPPSRSDMKGDMEGLI 343
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY P G Y AVEAPKGEFG Y++SDG +KPYR KI+APGFAHLAA++++
Sbjct: 344 HHFKLFSEGYCPPAGEVYAAVEAPKGEFGCYIISDGANKPYRLKIRAPGFAHLAAMDEMV 403
Query: 298 KGSFLADIVAII 309
KG LAD+VA+I
Sbjct: 404 KGHMLADVVAVI 415
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E K Y Q++PY DRLDYVSMMCNE Y LA+EKLL +E
Sbjct: 40 GEVIERADPHIGLLHRATEKLAESKPYNQSIPYMDRLDYVSMMCNEHGYVLAIEKLLGVE 99
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIR MF
Sbjct: 100 VPLRAQYIRTMF 111
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 18 INWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+N ++ P+ +IRN +NFGPQHPAAHGVL L E+
Sbjct: 1 MNRLNSRTPLMPEIRNYTLNFGPQHPAAHGVLRLVLEM 38
>gi|298370381|ref|ZP_06981697.1| NADH dehydrogenase (quinone), D subunit [Neisseria sp. oral taxon
014 str. F0314]
gi|298281841|gb|EFI23330.1| NADH dehydrogenase (quinone), D subunit [Neisseria sp. oral taxon
014 str. F0314]
Length = 418
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 199/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDQMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q + ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCADWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLARIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|218534472|sp|Q1GTK0.2|NUOD_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
Length = 405
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/280 (50%), Positives = 187/280 (66%), Gaps = 21/280 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRI NH++ +G+H +DVGAMTP W+FE RE + F+ERASGARMH+AY RPGGV
Sbjct: 114 MFAELTRICNHMLNIGSHVMDVGAMTPNLWVFELREDCLNFFERASGARMHSAYFRPGGV 173
Query: 111 ALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
D+P LL DI ++ T +L + ++ +NR++ QR D+ VS EDAL +GFSG
Sbjct: 174 HQDVPEKLLVDIGEWVETRLPKLFGDAMSLVIDNRIFKQRNVDIATVSKEDALAWGFSGP 233
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
M+RGSGI WDLRK QPYD Y EFDIP+GT G+ ++ ++E+ QS +I++Q + M
Sbjct: 234 MIRGSGIAWDLRKSQPYDAYAAMEFDIPVGTRGDCYDRFMVRVEEVYQSAKIIKQCLRDM 293
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G + + D K+ P R EMK G+ VP G Y A E+PKGEFGVYL
Sbjct: 294 PTGPIASLDRKVVPPKRGEMKQSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEFGVYL 353
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRCKI+ F+HL A++ + KG LAD AII
Sbjct: 354 VSDGTNKPYRCKIRPTAFSHLQAMDMMSKGHMLADTTAII 393
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ +DPH+GLLHRGTEKLIEYKTY QALPYFDRLDY S + E Y LA+EKLL++E
Sbjct: 44 GEIIERVDPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYCSPLGMEHSYVLAIEKLLDLE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA+Y+R MF
Sbjct: 104 VPARAQYLRTMFA 116
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ + N INFGPQHPAAHGVL + E+
Sbjct: 15 DQAVTNYTINFGPQHPAAHGVLRMVMEL 42
>gi|225077019|ref|ZP_03720218.1| hypothetical protein NEIFLAOT_02071 [Neisseria flavescens
NRL30031/H210]
gi|224951576|gb|EEG32785.1| hypothetical protein NEIFLAOT_02071 [Neisseria flavescens
NRL30031/H210]
Length = 418
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 199/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q + ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSDWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|59802069|ref|YP_208781.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae FA 1090]
gi|194099644|ref|YP_002002775.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae NCCP11945]
gi|240015000|ref|ZP_04721913.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae DGI18]
gi|240017448|ref|ZP_04723988.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae FA6140]
gi|240122069|ref|ZP_04735031.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae PID24-1]
gi|254494624|ref|ZP_05107795.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae 1291]
gi|268595651|ref|ZP_06129818.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae 35/02]
gi|268597683|ref|ZP_06131850.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae FA19]
gi|268599935|ref|ZP_06134102.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae MS11]
gi|268602269|ref|ZP_06136436.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID18]
gi|268604535|ref|ZP_06138702.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID1]
gi|268682990|ref|ZP_06149852.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID332]
gi|268685155|ref|ZP_06152017.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-92-679]
gi|268687418|ref|ZP_06154280.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-93-1035]
gi|291042880|ref|ZP_06568621.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae DGI2]
gi|293398109|ref|ZP_06642314.1| NADH dehydrogenase (quinone), D subunit [Neisseria gonorrhoeae F62]
gi|385336586|ref|YP_005890533.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae TCDC-NG08107]
gi|75355478|sp|Q5F618.1|NUOD_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|218534444|sp|B4RPI1.1|NUOD_NEIG2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|59718964|gb|AAW90369.1| putative NADH dehydrogenase I chain D [Neisseria gonorrhoeae FA
1090]
gi|193934934|gb|ACF30758.1| NADH dehydrogenase delta subunit [Neisseria gonorrhoeae NCCP11945]
gi|226513664|gb|EEH63009.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae 1291]
gi|268549040|gb|EEZ44458.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae 35/02]
gi|268551471|gb|EEZ46490.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae FA19]
gi|268584066|gb|EEZ48742.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae MS11]
gi|268586400|gb|EEZ51076.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID18]
gi|268588666|gb|EEZ53342.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID1]
gi|268623274|gb|EEZ55674.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae PID332]
gi|268625439|gb|EEZ57839.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-92-679]
gi|268627702|gb|EEZ60102.1| NADH dehydrogenase subunit I D [Neisseria gonorrhoeae SK-93-1035]
gi|291013314|gb|EFE05280.1| NADH-quinone oxidoreductase subunit D [Neisseria gonorrhoeae DGI2]
gi|291611372|gb|EFF40442.1| NADH dehydrogenase (quinone), D subunit [Neisseria gonorrhoeae F62]
gi|317165129|gb|ADV08670.1| NADH dehydrogenase subunit D [Neisseria gonorrhoeae TCDC-NG08107]
Length = 418
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 199/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPGFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q + ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCADWLRVNPGPVITANHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|381402243|ref|ZP_09927117.1| NADH dehydrogenase subunit D [Kingella kingae PYKK081]
gi|380832773|gb|EIC12667.1| NADH dehydrogenase subunit D [Kingella kingae PYKK081]
Length = 418
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 196/307 (63%), Gaps = 48/307 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNH+M VG+HALD+GAMT + F +RE++M+ YE SGARMHAAY RPGGV
Sbjct: 100 MFAEVTRILNHLMGVGSHALDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV 159
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P +LD I F F +D +E +LT+NR+
Sbjct: 160 YRDLPDFMPKYESSKYRNAKVLKELNSSREGTMLDFIDAFCERFPKNIDTLETLLTDNRI 219
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VS E AL GF+GVMLRGSGI+WD+RK QPY+ Y+ +FDIP+G +G+
Sbjct: 220 WKQRTVGIGVVSPERALQKGFTGVMLRGSGIEWDVRKKQPYEVYDQIDFDIPVGVNGDCY 279
Query: 204 ---VIGMKEMRQSLRIVEQA---INKMPGGEVRTDDMKISTPSRSEMK------------ 245
+ M EMRQS+RI++Q + P V T++ K++ P R++MK
Sbjct: 280 DRYLCRMAEMRQSVRIIKQCADWLRANPNLPVITENHKVAPPKRTDMKIGMEDLIHHFKL 339
Query: 246 ---GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFL 302
G VP G TYTAVE PKGEFG+Y++SDG +KPYR KI+APGFAHL ++++ +G L
Sbjct: 340 FTEGMHVPEGETYTAVEHPKGEFGIYMISDGANKPYRLKIRAPGFAHLQGMDEMARGHML 399
Query: 303 ADIVAII 309
AD+VAII
Sbjct: 400 ADVVAII 406
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y +A+EKL+ IEVP+RAKY
Sbjct: 37 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCMAIEKLVGIEVPIRAKY 96
Query: 370 IRVMFT 375
IR MF
Sbjct: 97 IRTMFA 102
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 KLRNYTINFGPQHPAAHGVLRMILEL 28
>gi|345864613|ref|ZP_08816812.1| NADH-quinone oxidoreductase subunit D [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124310|gb|EGW54191.1| NADH-quinone oxidoreductase subunit D [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 417
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/312 (49%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M +GTHALDVGAMT F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRTMFDEITRILNHLMWLGTHALDVGAMTVFLYAFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIP----------------IG---------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +G LLD I F F A +DE E +
Sbjct: 154 YRPGGVYRDLPDQMPQYQQSQWTTGRDVGRRNEARQGSLLDFIGDFADRFPALVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E AL GF+G MLRGSG++WDLRK Q Y Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERALQLGFTGPMLRGSGVEWDLRKKQSYAAYDKVDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++E+RQS RI++Q + + G V DD KI+ PSRS+MK
Sbjct: 274 VTGDSYDRYLVRIEELRQSNRIIKQCVEWLRNNPGPVMVDDHKIAPPSRSDMKGDMEGLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY P G Y AVEAPKGEFG Y++SDG +KPYR KI+APGFAHLAA++++
Sbjct: 334 HHFKLFSEGYCPPAGEVYAAVEAPKGEFGCYIISDGANKPYRLKIRAPGFAHLAAMDEMV 393
Query: 298 KGSFLADIVAII 309
KG LAD+VA+I
Sbjct: 394 KGHMLADVVAVI 405
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E K Y Q++PY DRLDYVSMMCNE Y LA+EKLL +E
Sbjct: 30 GEVIERADPHIGLLHRATEKLAESKPYNQSIPYMDRLDYVSMMCNEHGYVLAIEKLLGVE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIR MF
Sbjct: 90 VPLRAQYIRTMF 101
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLEM 28
>gi|288942131|ref|YP_003444371.1| NADH dehydrogenase I subunit D [Allochromatium vinosum DSM 180]
gi|288897503|gb|ADC63339.1| NADH dehydrogenase I, D subunit [Allochromatium vinosum DSM 180]
Length = 418
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/321 (47%), Positives = 195/321 (60%), Gaps = 49/321 (15%)
Query: 38 FGPQHPA-AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERAS 96
G Q P A + LF EITRILNH+M + HALD+GAM+ F + F ERE +++ YE S
Sbjct: 86 LGVQAPERAQYIRTLFDEITRILNHLMWLAAHALDIGAMSVFLYCFREREDLLDCYEAVS 145
Query: 97 GARMHAAYVRPGGVALDIPI--------------------------GLLDDIYHFISTFS 130
GARMHA Y RPGGV D+P LLD I F F
Sbjct: 146 GARMHATYYRPGGVHRDLPDTMPRYEGKSKWHSAREIAQRNSARDGSLLDFIQDFTDRFP 205
Query: 131 ARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYE 190
+DE E +LT+NR+W QRT D+G+VS E AL GF+G MLRGSGI+WDLRK QPY Y
Sbjct: 206 GHVDEYETLLTDNRIWKQRTVDIGVVSPERALQLGFTGPMLRGSGIEWDLRKKQPYAAYH 265
Query: 191 NFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSE 243
+FDIP+G +G+ ++ M+EMRQS RI+ Q ++ + G V +D K+ P R+E
Sbjct: 266 QVDFDIPVGVNGDCYDRYLVRMEEMRQSNRIIRQCVDWLRANPGPVSIEDHKVVPPKRAE 325
Query: 244 MK---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFA 288
+K GY PPG Y AVEAPKGEFG Y+VSDG +KPYR K++APGF
Sbjct: 326 VKENMEALIHHFKLFTEGYCPPPGEVYAAVEAPKGEFGCYIVSDGANKPYRLKVRAPGFP 385
Query: 289 HLAALEKIGKGSFLADIVAII 309
HLAAL+++ +G LAD+VAII
Sbjct: 386 HLAALDEMSRGHMLADVVAII 406
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 55/72 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL EYK Y Q++ Y DRLDYVSMMCNE Y A+EKLL ++
Sbjct: 30 GEVIERADPHIGLLHRGTEKLAEYKPYNQSIGYMDRLDYVSMMCNEHGYVRAIEKLLGVQ 89
Query: 363 VPLRAKYIRVMF 374
P RA+YIR +F
Sbjct: 90 APERAQYIRTLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLEM 28
>gi|255067284|ref|ZP_05319139.1| NADH dehydrogenase, D subunit [Neisseria sicca ATCC 29256]
gi|255048435|gb|EET43899.1| NADH dehydrogenase, D subunit [Neisseria sicca ATCC 29256]
Length = 418
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 199/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDQMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q + ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCADWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|349608695|ref|ZP_08888118.1| NADH-quinone oxidoreductase subunit D [Neisseria sp. GT4A_CT1]
gi|348611552|gb|EGY61196.1| NADH-quinone oxidoreductase subunit D [Neisseria sp. GT4A_CT1]
Length = 418
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 199/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDQMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q + ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCADWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|402827199|ref|ZP_10876302.1| NADH dehydrogenase subunit D [Sphingomonas sp. LH128]
gi|402259299|gb|EJU09559.1| NADH dehydrogenase subunit D [Sphingomonas sp. LH128]
Length = 403
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/284 (50%), Positives = 193/284 (67%), Gaps = 27/284 (9%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LFAE+TRI NH+M +G+H +D+GAMTP WLFE RE + F+ERASGARMH+A+ RPGG
Sbjct: 111 VLFAELTRICNHMMNMGSHIMDIGAMTPNLWLFEIREDCLNFFERASGARMHSAWFRPGG 170
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEV-EDMLT---ENRLWIQRTKDVGIVSAEDALNYG 165
V D+P+ LL DI ++ T RL E+ ED L+ +NR++ QR D+ VS EDAL +G
Sbjct: 171 VHQDVPLKLLTDIADWLDT---RLPELFEDALSLVADNRIFKQRNVDIATVSKEDALAWG 227
Query: 166 FSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQA 220
FSG M+RGSGI WD+RK QPYD Y+ +F++P+GT G+ + +E+RQS RI++Q
Sbjct: 228 FSGPMIRGSGIAWDIRKAQPYDVYDRMDFEVPVGTSGDCYDRFMCRAEEVRQSARIMKQC 287
Query: 221 INKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
+ +MP G V + D K+ P R+EMK G+ VP G Y A E+PKGEF
Sbjct: 288 LREMPEGPVASTDRKVVPPKRAEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKGEF 347
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDG++KPYRCKI+ F+HL A++ + KG L D AI+
Sbjct: 348 GVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAIL 391
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ IDPH+GLLHRGTEKLIE+KTY QALPYFDRLDY S + E Y LA+EKLLN+E
Sbjct: 42 GEIIERIDPHVGLLHRGTEKLIEHKTYLQALPYFDRLDYCSPLGMEHSYVLAIEKLLNLE 101
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 102 VPLRAQYLRVLFA 114
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
++ I N INFGPQHPAAHGVL + E I RI H+
Sbjct: 13 DEVITNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHV 52
>gi|421549803|ref|ZP_15995813.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 69166]
gi|433470421|ref|ZP_20427821.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
68094]
gi|433476822|ref|ZP_20434150.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
70012]
gi|433521032|ref|ZP_20477733.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
61103]
gi|433525273|ref|ZP_20481919.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
69096]
gi|433538006|ref|ZP_20494493.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
70030]
gi|402331754|gb|EJU67086.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 69166]
gi|432211854|gb|ELK67798.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
68094]
gi|432217975|gb|ELK73840.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
70012]
gi|432262498|gb|ELL17736.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
61103]
gi|432263421|gb|ELL18641.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
69096]
gi|432276146|gb|ELL31208.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
70030]
Length = 418
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 199/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDVFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q + ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCADWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|218767066|ref|YP_002341578.1| NADH dehydrogenase subunit D [Neisseria meningitidis Z2491]
gi|385338859|ref|YP_005892732.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D;
NDH-1, chain D) [Neisseria meningitidis WUE 2594]
gi|385854420|ref|YP_005900933.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240355]
gi|421539440|ref|ZP_15985601.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 93004]
gi|421543646|ref|ZP_15989737.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM140]
gi|421545707|ref|ZP_15991767.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM183]
gi|421547774|ref|ZP_15993806.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM2781]
gi|421551986|ref|ZP_15997967.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM576]
gi|433474722|ref|ZP_20432070.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
88050]
gi|433478909|ref|ZP_20436208.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63041]
gi|433512606|ref|ZP_20469408.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63049]
gi|433514624|ref|ZP_20471400.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2004090]
gi|433516833|ref|ZP_20473586.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
96023]
gi|433519023|ref|ZP_20475749.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
65014]
gi|433523162|ref|ZP_20479834.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97020]
gi|433527412|ref|ZP_20484025.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM3652]
gi|433529505|ref|ZP_20486104.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM3642]
gi|433531623|ref|ZP_20488192.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2007056]
gi|433533742|ref|ZP_20490291.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2001212]
gi|433540178|ref|ZP_20496635.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63006]
gi|218534449|sp|A1INN7.1|NUOD_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|121051074|emb|CAM07344.1| NADH dehydrogenase I chain D [Neisseria meningitidis Z2491]
gi|319411273|emb|CBY91680.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D;
NDH-1, chain D) [Neisseria meningitidis WUE 2594]
gi|325203361|gb|ADY98814.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240355]
gi|402321425|gb|EJU56899.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 93004]
gi|402325935|gb|EJU61342.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM183]
gi|402326488|gb|EJU61890.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM140]
gi|402327794|gb|EJU63181.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM2781]
gi|402332902|gb|EJU68220.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM576]
gi|432212782|gb|ELK68717.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
88050]
gi|432218883|gb|ELK74735.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63041]
gi|432250361|gb|ELL05756.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63049]
gi|432256047|gb|ELL11372.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
96023]
gi|432256288|gb|ELL11611.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2004090]
gi|432256764|gb|ELL12078.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
65014]
gi|432262618|gb|ELL17854.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97020]
gi|432267481|gb|ELL22659.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM3652]
gi|432269643|gb|ELL24800.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2007056]
gi|432269756|gb|ELL24909.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM3642]
gi|432274295|gb|ELL29388.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2001212]
gi|432278159|gb|ELL33203.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
63006]
Length = 418
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|333376390|ref|ZP_08468173.1| NADH-quinone oxidoreductase subunit D [Kingella kingae ATCC 23330]
gi|332968232|gb|EGK07309.1| NADH-quinone oxidoreductase subunit D [Kingella kingae ATCC 23330]
Length = 418
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 196/307 (63%), Gaps = 48/307 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNH+M VG+HALD+GAMT + F +RE++M+ YE SGARMHAAY RPGGV
Sbjct: 100 MFAEVTRILNHLMGVGSHALDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV 159
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P +LD I F F +D +E +LT+NR+
Sbjct: 160 YRDLPDFMPKYESSKYRNAKVLKELNASREGTMLDFIDAFCERFPRNIDTLETLLTDNRI 219
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VS E AL GF+GVMLRGSGI+WD+RK QPY+ Y+ +FDIP+G +G+
Sbjct: 220 WKQRTVGIGVVSPERALQKGFTGVMLRGSGIEWDVRKKQPYEVYDQIDFDIPVGVNGDCY 279
Query: 204 ---VIGMKEMRQSLRIVEQA---INKMPGGEVRTDDMKISTPSRSEMK------------ 245
+ M EMRQS+RI++Q + P V T++ K++ P R++MK
Sbjct: 280 DRYLCRMAEMRQSVRIIKQCADWLRANPNLPVITENHKVAPPKRTDMKIGMEDLIHHFKL 339
Query: 246 ---GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFL 302
G VP G TYTAVE PKGEFG+Y++SDG +KPYR KI+APGFAHL ++++ +G L
Sbjct: 340 FTEGMHVPEGETYTAVEHPKGEFGIYMISDGANKPYRLKIRAPGFAHLQGMDEMARGHML 399
Query: 303 ADIVAII 309
AD+VAII
Sbjct: 400 ADVVAII 406
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 55/66 (83%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY Q LPY DRLDYVSMM NEQ Y +A+EKL+ IEVP+RAKY
Sbjct: 37 DPHIGLLHRGTEKLAETKTYLQTLPYMDRLDYVSMMVNEQAYCMAIEKLVGIEVPIRAKY 96
Query: 370 IRVMFT 375
IR MF
Sbjct: 97 IRTMFA 102
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 KLRNYTINFGPQHPAAHGVLRMILEL 28
>gi|15676168|ref|NP_273300.1| NADH dehydrogenase subunit D [Neisseria meningitidis MC58]
gi|385852443|ref|YP_005898957.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
H44/76]
gi|416194955|ref|ZP_11617536.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
CU385]
gi|427826971|ref|ZP_18994016.1| NADH dehydrogenase, D subunit [Neisseria meningitidis H44/76]
gi|433464228|ref|ZP_20421722.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM422]
gi|433487433|ref|ZP_20444612.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M13255]
gi|433489607|ref|ZP_20446746.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM418]
gi|433504140|ref|ZP_20461085.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
9506]
gi|433506288|ref|ZP_20463207.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
9757]
gi|433508334|ref|ZP_20465220.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
12888]
gi|433510505|ref|ZP_20467348.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
4119]
gi|81857626|sp|Q9K1C0.1|NUOD_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|7225466|gb|AAF40698.1| NADH dehydrogenase I, D subunit [Neisseria meningitidis MC58]
gi|316985172|gb|EFV64124.1| NADH dehydrogenase, D subunit [Neisseria meningitidis H44/76]
gi|325141080|gb|EGC63583.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
CU385]
gi|325199447|gb|ADY94902.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
H44/76]
gi|432206038|gb|ELK62053.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM422]
gi|432226198|gb|ELK81931.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M13255]
gi|432230603|gb|ELK86278.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM418]
gi|432243523|gb|ELK99034.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
9506]
gi|432244304|gb|ELK99799.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
9757]
gi|432249985|gb|ELL05383.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
12888]
gi|432250573|gb|ELL05966.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
4119]
Length = 418
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 57/66 (86%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL+ I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLVGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|419796910|ref|ZP_14322422.1| NADH dehydrogenase subunit D [Neisseria sicca VK64]
gi|385698971|gb|EIG29296.1| NADH dehydrogenase subunit D [Neisseria sicca VK64]
Length = 418
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 199/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDQMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q + ++ G V T + K + P R+EMK
Sbjct: 275 INGDCYDRYLCRMEEMRQSVRIIKQCADWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|121634116|ref|YP_974361.1| NADH dehydrogenase subunit D [Neisseria meningitidis FAM18]
gi|385327612|ref|YP_005881915.1| NADH dehydrogenase I subunit D [Neisseria meningitidis alpha710]
gi|385850506|ref|YP_005897021.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M04-240196]
gi|416179748|ref|ZP_11611184.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M6190]
gi|416181441|ref|ZP_11611635.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M13399]
gi|416190077|ref|ZP_11615557.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
ES14902]
gi|416211695|ref|ZP_11621501.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240013]
gi|418287458|ref|ZP_12900056.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM233]
gi|418289712|ref|ZP_12901964.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM220]
gi|421553991|ref|ZP_15999942.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 98008]
gi|421556235|ref|ZP_16002152.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 80179]
gi|433468478|ref|ZP_20425915.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
98080]
gi|433491733|ref|ZP_20448835.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM586]
gi|433493840|ref|ZP_20450916.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM762]
gi|433495956|ref|ZP_20453005.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M7089]
gi|433498127|ref|ZP_20455143.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M7124]
gi|433500032|ref|ZP_20457023.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM174]
gi|218534431|sp|A1KRS5.1|NUOD_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120865822|emb|CAM09554.1| NADH dehydrogenase I chain D [Neisseria meningitidis FAM18]
gi|308388464|gb|ADO30784.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha710]
gi|325131610|gb|EGC54317.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M6190]
gi|325135047|gb|EGC57675.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M13399]
gi|325139135|gb|EGC61681.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
ES14902]
gi|325145308|gb|EGC67586.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240013]
gi|325205329|gb|ADZ00782.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M04-240196]
gi|372203074|gb|EHP16806.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM220]
gi|372203725|gb|EHP17337.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM233]
gi|402334027|gb|EJU69322.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 98008]
gi|402338088|gb|EJU73327.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis 80179]
gi|432206564|gb|ELK62571.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
98080]
gi|432230753|gb|ELK86425.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM586]
gi|432232018|gb|ELK87673.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM762]
gi|432236894|gb|ELK92498.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M7124]
gi|432237598|gb|ELK93191.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
M7089]
gi|432237744|gb|ELK93335.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM174]
Length = 418
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|416167966|ref|ZP_11607796.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
OX99.30304]
gi|325130972|gb|EGC53699.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
OX99.30304]
Length = 418
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|385342721|ref|YP_005896592.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240149]
gi|385856386|ref|YP_005902898.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
NZ-05/33]
gi|416186272|ref|ZP_11613633.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M0579]
gi|421568426|ref|ZP_16014149.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM3001]
gi|325137071|gb|EGC59667.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M0579]
gi|325202927|gb|ADY98381.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
M01-240149]
gi|325207275|gb|ADZ02727.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
NZ-05/33]
gi|402341368|gb|EJU76547.1| ubiquinone dehydrogenase, D subunit [Neisseria meningitidis NM3001]
Length = 418
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|433535900|ref|ZP_20492419.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
77221]
gi|432276321|gb|ELL31379.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
77221]
Length = 418
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|74317163|ref|YP_314903.1| NADH dehydrogenase subunit D [Thiobacillus denitrificans ATCC
25259]
gi|123611998|sp|Q3SJQ4.1|NUOD_THIDA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|74056658|gb|AAZ97098.1| NADH dehydrogenase I chain D [Thiobacillus denitrificans ATCC
25259]
Length = 417
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/313 (48%), Positives = 199/313 (63%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH++ +G HALDVGAMT F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRVLNHLLWLGAHALDVGAMTVFLYAFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F A +DE E +
Sbjct: 154 YRPGGVYRDLPDRMPQYQAQHTRNESTMKSMNANRQGSLLDFIEDFTTRFPAYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E AL GF+G MLRGSG++WDLRK QPY+ YE +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVAPERALALGFTGPMLRGSGVEWDLRKKQPYEVYERMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
T+G+ ++ ++EMRQS RI+ Q ++ K P G + D+ K+S P R +MK
Sbjct: 274 TNGDCYDRYLVRIEEMRQSNRIIRQCVDWLRKNP-GPIMVDNHKVSPPPRVDMKQNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHL AL+++
Sbjct: 333 IHHFKLFTEGMHVPAGEAYAAVEHPKGEFGIYLVSDGANKPYRMKIRAPGFAHLEALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD+VAII
Sbjct: 393 SRGHMIADVVAII 405
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E+KT+ QALPY DRLDYVSMM NE Y +A+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEHKTFLQALPYMDRLDYVSMMVNEHAYVMAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRVMF
Sbjct: 90 VPERAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|297538953|ref|YP_003674722.1| NADH dehydrogenase I subunit D [Methylotenera versatilis 301]
gi|297258300|gb|ADI30145.1| NADH dehydrogenase I, D subunit [Methylotenera versatilis 301]
Length = 417
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/313 (48%), Positives = 198/313 (63%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH++ +G HALDVGAMT F + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRVLNHLLWLGAHALDVGAMTVFLYAFREREDLFDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F++ F +DE E +
Sbjct: 154 YRPGGVYRDLPTQMPQYEVSPLRNAKTVKSQNENRQGSLLDFIEDFVNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT DVGIV+ E AL G +G MLRGSGI WDLRK QPY+ Y N +FDIP+G
Sbjct: 214 LTDNRIWKQRTVDVGIVTPERALQLGMTGPMLRGSGIAWDLRKTQPYEVYANMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ M+E RQS RI++Q ++ K PG + +D+ K++ P R MK
Sbjct: 274 VNGDCYDRYLVRMEEFRQSNRIIKQCVDWLRKNPGPVISSDN-KVAPPDREGMKSNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+Y+VSDG +KPYR KI+APGFAHLAAL+++
Sbjct: 333 IHHFKLFTEGFHVPAGEAYAAVEHPKGEFGIYMVSDGANKPYRLKIRAPGFAHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD+VAII
Sbjct: 393 TRGHMIADLVAII 405
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E +TY Q++PY DRLDYVSMM NE Y +A+EK++ IE
Sbjct: 30 GEVIQRADPHIGLLHRGTEKLAENRTYLQSVPYMDRLDYVSMMSNEHAYVMAIEKMMGIE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|332526750|ref|ZP_08402852.1| NADH dehydrogenase subunit D [Rubrivivax benzoatilyticus JA2]
gi|332111153|gb|EGJ11185.1| NADH dehydrogenase subunit D [Rubrivivax benzoatilyticus JA2]
Length = 417
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/306 (48%), Positives = 193/306 (63%), Gaps = 47/306 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
++AE+TR+LNH++ +GTHA+D GAM F + F ERE + + YE SGARMHAAY RPGGV
Sbjct: 100 MYAELTRLLNHLLWLGTHAMDCGAMNVFLYAFREREDIFDMYEAVSGARMHAAYFRPGGV 159
Query: 111 ALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P LLD I F+ F +R+D+ E +LT+NR+
Sbjct: 160 YRDLPDAMPQYTFSKIRNERALKELNANRQGSLLDFIEDFVKRFPSRVDDYETLLTDNRI 219
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+V+ E ALN GFSG MLRGSGI WDLRK QPYD Y+ +FDIP+G G+
Sbjct: 220 WKQRTVGIGVVTPERALNLGFSGPMLRGSGIAWDLRKQQPYDAYDRVDFDIPVGVKGDTY 279
Query: 204 ---VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------------- 245
++ M+EMRQS RIV+Q ++ + G V TD+ K++ P+R +MK
Sbjct: 280 DRYLVRMEEMRQSNRIVQQCVDWLRANPGPVITDNHKVAPPARVDMKANMEELIHHFKLF 339
Query: 246 --GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLA 303
G VP G Y VE PKGEFG+YL+SDG +KPYR KI+ PGF HLAAL+++ +G LA
Sbjct: 340 SEGMHVPEGEAYATVEHPKGEFGIYLISDGANKPYRMKIRPPGFVHLAALDELARGHMLA 399
Query: 304 DIVAII 309
D VAII
Sbjct: 400 DAVAII 405
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q LPY DRLDYVSMM NEQ Y LAVEKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTYLQNLPYMDRLDYVSMMVNEQAYCLAVEKLLGIE 89
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIR M+
Sbjct: 90 VPLRAKYIRTMYA 102
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|304389069|ref|ZP_07371113.1| NADH-quinone oxidoreductase subunit D [Neisseria meningitidis ATCC
13091]
gi|304336942|gb|EFM03132.1| NADH-quinone oxidoreductase subunit D [Neisseria meningitidis ATCC
13091]
Length = 418
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYGKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDGT+KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGTNKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 57/66 (86%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL+ I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLVGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|421564481|ref|ZP_16010280.1| NADH dehydrogenase I chain D [Neisseria meningitidis NM3081]
gi|402346078|gb|EJU81182.1| NADH dehydrogenase I chain D [Neisseria meningitidis NM3081]
Length = 418
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 57/66 (86%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL+ I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLVGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|340361176|ref|ZP_08683612.1| NADH-quinone oxidoreductase subunit D [Neisseria macacae ATCC
33926]
gi|339888918|gb|EGQ78335.1| NADH-quinone oxidoreductase subunit D [Neisseria macacae ATCC
33926]
Length = 418
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDQMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|398397417|ref|XP_003852166.1| hypothetical protein MYCGRDRAFT_104474, partial [Zymoseptoria
tritici IPO323]
gi|339472047|gb|EGP87142.1| hypothetical protein MYCGRDRAFT_104474 [Zymoseptoria tritici
IPO323]
Length = 391
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 131/206 (63%), Positives = 162/206 (78%), Gaps = 5/206 (2%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LFAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAY
Sbjct: 186 AKWIRTLFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAY 245
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
VRPGGV+ D+P+GLLDDIY + + F R+DE E+MLT+NR+WI RTK VG+V A DALN
Sbjct: 246 VRPGGVSQDLPVGLLDDIYQWATQFGDRIDETEEMLTDNRIWIGRTKGVGVVPAADALNM 305
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGVMLRGSGI WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q
Sbjct: 306 SFSGVMLRGSGIPWDIRKSQPYDAYDQVEFDVPVGVNGDCYDRYLCRMEEFRQSLRIIHQ 365
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK 245
+NKMP G V+ +D KIS P R+ MK
Sbjct: 366 CLNKMPAGPVKVEDYKISPPPRAAMK 391
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 61/66 (92%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQC+SLAVEKLLNIE+P RAK+
Sbjct: 129 DPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKW 188
Query: 370 IRVMFT 375
IR +F
Sbjct: 189 IRTLFA 194
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 25 VPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
P +++IR+ +NFGPQHPAAHGVL L E+
Sbjct: 90 TPEQRKIRHYTVNFGPQHPAAHGVLRLILELN 121
>gi|254805714|ref|YP_003083935.1| NADH dehydrogenase subunit D [Neisseria meningitidis alpha14]
gi|421537283|ref|ZP_15983471.1| NADH dehydrogenase I chain D [Neisseria meningitidis 93003]
gi|421541583|ref|ZP_15987700.1| NADH dehydrogenase I chain D [Neisseria meningitidis NM255]
gi|421558275|ref|ZP_16004158.1| NADH dehydrogenase I chain D [Neisseria meningitidis 92045]
gi|433502087|ref|ZP_20459058.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM126]
gi|254669256|emb|CBA08148.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha14]
gi|254674107|emb|CBA09891.1| NADH dehydrogenase I chain D [Neisseria meningitidis alpha275]
gi|402319760|gb|EJU55265.1| NADH dehydrogenase I chain D [Neisseria meningitidis 93003]
gi|402319952|gb|EJU55456.1| NADH dehydrogenase I chain D [Neisseria meningitidis NM255]
gi|402338457|gb|EJU73690.1| NADH dehydrogenase I chain D [Neisseria meningitidis 92045]
gi|432243299|gb|ELK98811.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
NM126]
Length = 418
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|407798869|ref|ZP_11145772.1| NADH dehydrogenase I, D subunit [Oceaniovalibus guishaninsula
JLT2003]
gi|407059217|gb|EKE45150.1| NADH dehydrogenase I, D subunit [Oceaniovalibus guishaninsula
JLT2003]
Length = 412
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 143/284 (50%), Positives = 197/284 (69%), Gaps = 23/284 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+H++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 118 IRVLYSEIGRILSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHAAYFRP 177
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L++DI + F LD+++ +LTENR++ QR D+G+VS ++A ++GFS
Sbjct: 178 GGVHQDLPPDLIEDIDAWAVEFPKVLDDIDGLLTENRIFKQRNVDIGVVSPQEAQDWGFS 237
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F F IP+G +G+ ++ M EMR+S I+ QA
Sbjct: 238 GVMVRGSGMAWDLRRAQPYECYDEFAFQIPVGQNGDCFDRYLVRMAEMRESTSIIRQACA 297
Query: 223 KMPG--GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G V+T KI+ P R +MK G+ VP G Y AVEAPKGEF
Sbjct: 298 KLRAEPGPVQTKG-KIAPPRRGDMKTSMEALIHHFKLYTEGFHVPEGEIYAAVEAPKGEF 356
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVY+V+DGT++PYR K++APG+ HL A++ I KG LAD+ AII
Sbjct: 357 GVYIVADGTNRPYRAKLRAPGYLHLQAMDHISKGHQLADVAAII 400
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 53/73 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPY DRLDYV+ M E + LA+E+L +
Sbjct: 51 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLTDTP 110
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 111 VPRRGQLIRVLYS 123
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 22 EQRIRNFNINFGPQHPAAHGVLRLVLEL 49
>gi|261379577|ref|ZP_05984150.1| NADH dehydrogenase, D subunit [Neisseria subflava NJ9703]
gi|284798051|gb|EFC53398.1| NADH dehydrogenase, D subunit [Neisseria subflava NJ9703]
Length = 418
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVTPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGIEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 56/65 (86%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMF 374
IRVMF
Sbjct: 98 IRVMF 102
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|335044178|ref|ZP_08537203.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Methylophaga
aminisulfidivorans MP]
gi|333787424|gb|EGL53308.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Methylophaga
aminisulfidivorans MP]
Length = 417
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 194/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G H LD+GAMT F + F ERE +M+ YE SGARMHA Y
Sbjct: 94 AQYIRVMFDEITRVLNHLMWLGAHGLDIGAMTVFLYCFREREDLMDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPDKMPQYQTSKWHNEKEIKKKNQNREGSLLDFIEDFTQRFPHCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E AL GFSG MLRGSGI+WDLR+ QPY+ Y+ +FDIPIG
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERALQLGFSGPMLRGSGIEWDLRRKQPYEVYDQLDFDIPIG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ + EMR+S RI++Q ++ + G V DD K++ P RS MK
Sbjct: 274 KEGDCYDRYLVRVAEMRESNRIIKQCVDWLRANPGPVIVDDTKVAPPKRSTMKNDMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G YTA+E PKGEFG+Y++SDG +KPYR KI+APGF HLAA++++
Sbjct: 334 HHFKLFTEGYCVPEGEVYTAIEHPKGEFGIYMISDGANKPYRVKIRAPGFPHLAAMDEMA 393
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 394 KGHMLADVVAII 405
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPH+GLLHRGTEKL E K + Q++ Y DRLDYVSMMCNE Y +A+EKL+ I+
Sbjct: 30 GEVIVRADPHVGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVMAIEKLIGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPVRAQYIRVMF 101
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNFTLNFGPQHPAAHGVLRLILEM 28
>gi|241760584|ref|ZP_04758676.1| NADH dehydrogenase subunit D [Neisseria flavescens SK114]
gi|241318765|gb|EER55291.1| NADH dehydrogenase subunit D [Neisseria flavescens SK114]
Length = 418
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVTPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|389604876|emb|CCA43802.1| NADH dehydrogenase I subunit D [Neisseria meningitidis alpha522]
Length = 418
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVTPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 56/65 (86%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMF 374
IRVMF
Sbjct: 98 IRVMF 102
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|255261986|ref|ZP_05341328.1| NADH dehydrogenase (quinone), d subunit [Thalassiobium sp. R2A62]
gi|255104321|gb|EET46995.1| NADH dehydrogenase (quinone), d subunit [Thalassiobium sp. R2A62]
Length = 405
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 140/286 (48%), Positives = 199/286 (69%), Gaps = 27/286 (9%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 111 IRVLYSEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 170
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+++I + + F L +++ +LTENR++ QR D+G+VS ++ L++GFS
Sbjct: 171 GGVHQDLPDDLIEEIDSWATEFPKVLADIDGLLTENRIFKQRNADIGVVSEQEILDWGFS 230
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ + M+EMR+S++I+ QA+
Sbjct: 231 GVMARGSGLAWDLRRSQPYECYDEFDFQIPVGVNGDCYDRYLCRMQEMRESVKIIHQAVA 290
Query: 223 KMPGGEVRTDDM----KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ V D+ K++ P+R EMK G+ VP G Y AVEAPKG
Sbjct: 291 KL---RVEKGDVMARGKMTPPTRGEMKTSMEALIHHFKLYTEGFHVPEGEVYVAVEAPKG 347
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYL +DG++KPYR K++APG+ HL A++ I KG LAD+ AII
Sbjct: 348 EFGVYLKADGSNKPYRAKLRAPGYLHLQAMDHICKGHQLADVAAII 393
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL E
Sbjct: 44 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGTE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 104 VPRRASLIRVLYS 116
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+QIRN INFGPQHPAAHGVL L E+
Sbjct: 15 EQQIRNFNINFGPQHPAAHGVLRLVLEL 42
>gi|217970159|ref|YP_002355393.1| NADH dehydrogenase subunit D [Thauera sp. MZ1T]
gi|217507486|gb|ACK54497.1| NADH dehydrogenase I, D subunit [Thauera sp. MZ1T]
Length = 417
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 195/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH++ +GTHALD+GAMT + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRVLNHLLNIGTHALDIGAMTMVLYTFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD + F + F DE E +
Sbjct: 154 YRPGGVYRDLPDRMPKYEVNKFKNEKTVRELNANREGSMLDFLEDFTNRFPTYCDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E AL +GF+G MLRGSGI WDLRK QPY+ Y+ +FD+PIG
Sbjct: 214 LTDNRIWKQRTVGIGVVSPEQALAWGFTGPMLRGSGIAWDLRKKQPYEVYDRVDFDVPIG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS RI++Q I+ + G V TD+ K++ PSR MK
Sbjct: 274 KNGDCYDRYLCRMEEMRQSNRIIKQCIDWLRKNSGPVITDNHKVAPPSREAMKTNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y AVE PKGEFGVY VSDG +KPYR K++APGFAHLAA++ I
Sbjct: 334 HHFKLFTEGMHVPKGEVYAAVEHPKGEFGVYAVSDGANKPYRLKLRAPGFAHLAAMDDIA 393
Query: 298 KGSFLADIVAII 309
+G +AD+VAII
Sbjct: 394 RGHMIADVVAII 405
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E +T+ Q++PY DRLDYVSMMCNE Y +A+EKLL +E
Sbjct: 30 GEVVERADPHIGLLHRGTEKLAETRTWVQSVPYMDRLDYVSMMCNEHAYCMAIEKLLGVE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN INFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLVLEL 28
>gi|387130156|ref|YP_006293046.1| NADH-ubiquinone oxidoreductase subunit D [Methylophaga sp. JAM7]
gi|386271445|gb|AFJ02359.1| NADH-ubiquinone oxidoreductase chain D [Methylophaga sp. JAM7]
Length = 417
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 197/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF E+TRILNH+M +G H LD+GAMT F + F ERE +M+ YE SGARMHA Y
Sbjct: 94 AQYIRVLFDEMTRILNHLMWLGAHGLDIGAMTIFLYCFREREDLMDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F+ F A +DE E +
Sbjct: 154 YRPGGVYRDLPARMPLYQASKWHSQKEVDAKNANRQGSLLDFIEDFVQRFPACVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+++ E AL GF+G MLRGSGI+WDLR+ QPY+ Y+ F+IPIG
Sbjct: 214 LTDNRIWKQRTVGIGVITPERALQLGFTGPMLRGSGIEWDLRRKQPYEVYDQLAFEIPIG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS I++Q I+ ++ G V TD+ K++ P R++MK
Sbjct: 274 KEGDCYDRYLVRVEEMRQSANIMQQCIDWLRVNPGPVITDNAKVAPPHRADMKDDMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G Y AVE PKGEFGVYLVSDG +KPYR KI+APGF HLAA++++
Sbjct: 334 HHFKLFTEGYCVPEGEVYAAVEHPKGEFGVYLVSDGANKPYRVKIRAPGFPHLAAMDEMA 393
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 394 KGHMLADVVAII 405
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E K + Q++ Y DRLDYVSMMCNE Y +A+EKLL I
Sbjct: 30 GEVIERADPHIGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVMAIEKLLGIT 89
Query: 363 VPLRAKYIRVMF 374
PLRA+YIRV+F
Sbjct: 90 PPLRAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILEM 28
>gi|238023162|ref|ZP_04603588.1| hypothetical protein GCWU000324_03088 [Kingella oralis ATCC 51147]
gi|237865545|gb|EEP66685.1| hypothetical protein GCWU000324_03088 [Kingella oralis ATCC 51147]
Length = 418
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 146/307 (47%), Positives = 194/307 (63%), Gaps = 48/307 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNH+M VG+HALD+GAMT + F +RE++M+ YE SGARMHAAY R GGV
Sbjct: 100 MFAEVTRILNHLMGVGSHALDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRVGGV 159
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P +LD I F F +D +E +LT+NR+
Sbjct: 160 YRDLPDFMPKYEASKYRSAKVLKELNASREGSMLDFIDAFCERFPKNIDTLETLLTDNRI 219
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VS E AL GF+GVMLRGSG++WD+RK QPY+ Y +FDIP+G +G+
Sbjct: 220 WKQRTVGIGVVSPERALQKGFTGVMLRGSGVEWDVRKKQPYEMYHEMDFDIPVGVNGDCY 279
Query: 204 ---VIGMKEMRQSLRIVEQA---INKMPGGEVRTDDMKISTPSRSEMK------------ 245
+ M EMRQS+RI++Q + P V TD+ K++ P R+EMK
Sbjct: 280 DRYLCRMAEMRQSVRIIKQCADWLRANPNLPVITDNHKVAPPKRTEMKMGMEDLIHHFKL 339
Query: 246 ---GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFL 302
G VP G TYTA+E PKGEFGVY++SDG +KPYR KI+APGFAHL ++++ +G L
Sbjct: 340 FTEGMHVPEGETYTAIEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMARGHML 399
Query: 303 ADIVAII 309
AD+VAII
Sbjct: 400 ADVVAII 406
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 57/66 (86%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMMCNEQ Y LA+EKLL IEVP+RAKY
Sbjct: 37 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMCNEQAYCLAIEKLLGIEVPIRAKY 96
Query: 370 IRVMFT 375
IR MF
Sbjct: 97 IRTMFA 102
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 KLRNYTINFGPQHPAAHGVLRMILEL 28
>gi|350545163|ref|ZP_08914668.1| NADH-ubiquinone oxidoreductase chain D [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527054|emb|CCD38995.1| NADH-ubiquinone oxidoreductase chain D [Candidatus Burkholderia
kirkii UZHbot1]
Length = 417
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 152/310 (49%), Positives = 194/310 (62%), Gaps = 49/310 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EITR+LNH+M +G+HALDVGAM F + F ERE +M+ YE SGARMHAAY RP
Sbjct: 97 IRVLFDEITRVLNHLMWIGSHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRP 156
Query: 108 GGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P LLD I F + F +DE E +LT+
Sbjct: 157 GGVYRDLPDAMPQYKASTIRNAKALDKMNENRQGSLLDFIEDFFNRFPGYVDEYETLLTD 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QR D+G+VS E AL G SG MLRGSGI+WDLRK QPY+ Y +FDIP+G +G
Sbjct: 217 NRIWKQRLVDIGVVSPERALQMGLSGAMLRGSGIEWDLRKKQPYEVYAQLDFDIPVGVNG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK--------- 245
+ ++ ++EMRQS RI +Q I K P G V D+ K++ PSR MK
Sbjct: 277 DCYDRYLVRVEEMRQSTRIAKQCIAWLRKNP-GPVMIDNHKVAPPSRVGMKSNMEELIHH 335
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
G+ VP G TY AVE PKGEFG+YL+SDG +KPYR KI+APG+AHLAAL+++ +G
Sbjct: 336 FKLFTEGFHVPEGETYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGYAHLAALDEMARG 395
Query: 300 SFLADIVAII 309
+AD V II
Sbjct: 396 HMIADAVTII 405
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTFLQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RAKYIRV+F
Sbjct: 90 VPIRAKYIRVLF 101
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTVNFGPQHPAAHGVLRLVLEL 28
>gi|399059561|ref|ZP_10745177.1| NADH dehydrogenase I, D subunit [Novosphingobium sp. AP12]
gi|398039268|gb|EJL32407.1| NADH dehydrogenase I, D subunit [Novosphingobium sp. AP12]
Length = 403
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 195/286 (68%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+A+
Sbjct: 106 AQYLRVLFAELTRICNHMLNMGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAW 165
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL D+ ++ T RL ++ ++ +NR++ QR D+ I S ED+L
Sbjct: 166 FRPGGVHQDVPLKLLTDLADWLDTRLPRLFEDAMSLVVDNRIFKQRNVDIAITSREDSLA 225
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+R +GI WD+RK QPYD Y+ +F+IP+GT+ + ++ ++E+RQS +I++
Sbjct: 226 WGFSGPMIRAAGIPWDIRKSQPYDVYDRMDFEIPVGTNSDCYDRFMVRVEEVRQSAKIMK 285
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + +MP G V +DD K+ P R+EMK G+ VP G Y A E+PKG
Sbjct: 286 QCLREMPEGPVASDDRKVVPPKRAEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKG 345
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+ F+HL A++ + KG L D AI+
Sbjct: 346 EFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAIL 391
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ IDPH+GLLHRGTEKLIE+KTY QALPYFDRLDY S + E Y LA+EKLLN+E
Sbjct: 42 GEIIERIDPHVGLLHRGTEKLIEHKTYLQALPYFDRLDYCSPLAMEHSYVLAIEKLLNLE 101
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 102 VPLRAQYLRVLFA 114
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
++ I N INFGPQHPAAHGVL + E I RI H+
Sbjct: 13 DEVITNYTINFGPQHPAAHGVLRMVMELDGEIIERIDPHV 52
>gi|261400472|ref|ZP_05986597.1| NADH dehydrogenase, D subunit [Neisseria lactamica ATCC 23970]
gi|313669283|ref|YP_004049567.1| NADH dehydrogenase I subunit D [Neisseria lactamica 020-06]
gi|421862676|ref|ZP_16294381.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|269209731|gb|EEZ76186.1| NADH dehydrogenase, D subunit [Neisseria lactamica ATCC 23970]
gi|309379800|emb|CBX21576.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006745|emb|CBN88215.1| NADH dehydrogenase I chain D [Neisseria lactamica 020-06]
Length = 418
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 197/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYGKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|34496399|ref|NP_900614.1| NADH dehydrogenase subunit D [Chromobacterium violaceum ATCC 12472]
gi|81656634|sp|Q7NZH8.1|NUOD_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|34102252|gb|AAQ58618.1| NADH-ubiquinone oxidoreductase, chain D [Chromobacterium violaceum
ATCC 12472]
Length = 417
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 195/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITRILNH++ +G HALD+GAMT F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFAEITRILNHLLWIGAHALDIGAMTMFLYAFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +DE E +
Sbjct: 154 FRPGGVYRDLPDSMPQYTVSKIKNAKELARLNEGRKGSMLDFIEDFTKRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E ALN G +G MLRGSGI WDLRK QPYD Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRTVGIGVVTPERALNLGMTGPMLRGSGIAWDLRKTQPYDVYDKMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS RI++Q + + G V TD+ K++ PSR MK
Sbjct: 274 VGGDCYDRYLVRVEEMRQSNRIIQQCVAWLRANPGPVITDNHKVAPPSREGMKSNMEDLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APG+AHLAAL+++
Sbjct: 334 HHFKLFTEGMHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
G +AD+VAII
Sbjct: 394 TGHMIADVVAII 405
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E KT+ Q+LPY DRLDYVSMMCNE Y LA+EK++ IE
Sbjct: 30 GEVVQRADPHIGLLHRGTEKLAESKTFIQSLPYMDRLDYVSMMCNEHAYCLAIEKMMGIE 89
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRVMF
Sbjct: 90 VPERAQYIRVMFA 102
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|385323389|ref|YP_005877828.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D;
NDH-1, chain D) [Neisseria meningitidis 8013]
gi|261391776|emb|CAX49231.1| NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D;
NDH-1, chain D) [Neisseria meningitidis 8013]
Length = 418
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 197/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYGKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|88812973|ref|ZP_01128216.1| NADH dehydrogenase delta subunit [Nitrococcus mobilis Nb-231]
gi|88789751|gb|EAR20875.1| NADH dehydrogenase delta subunit [Nitrococcus mobilis Nb-231]
Length = 417
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 195/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF E+TRILNH++ +G HALDVGAMT F + F +RE +M+ YE SG RMHA Y
Sbjct: 94 AQYIRVLFDELTRILNHLLWLGAHALDVGAMTVFLYCFAKREDLMDCYEAVSGTRMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P+ +LD I HF + F +DE E +
Sbjct: 154 YRPGGVYRDLPMRMPHYQPSPKRSQKDLERLNRARQGSMLDYIEHFAAEFPHCIDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR DV +V E AL GF+G MLRGSG++WDLRK QPY Y+ FDIP+G
Sbjct: 214 LTDNRIWKQRLVDVAVVDPERALQLGFTGPMLRGSGVEWDLRKKQPYAVYDQLAFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
T+G+ ++ ++EMRQS+R++ Q ++ + G V D K++ PSR EMK
Sbjct: 274 TNGDCYDRYLVRVEEMRQSVRLITQCVDWLRANPGPVMVADHKVAPPSREEMKDDMESLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G Y AVEAPKGEFG Y+VSDG +KPYR K++APGFAHLAA++++
Sbjct: 334 HHFKLFTEGYCVPEGEAYAAVEAPKGEFGAYIVSDGANKPYRLKLRAPGFAHLAAMDEMS 393
Query: 298 KGSFLADIVAII 309
+G LAD+V II
Sbjct: 394 RGHMLADVVTII 405
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHR TEKL E K + Q++ Y DRLDYVSMMCNE Y LA+EKLL +E
Sbjct: 30 GEVVRRVDPHIGLLHRATEKLAETKPFNQSIGYMDRLDYVSMMCNEHAYVLAIEKLLGLE 89
Query: 363 VPLRAKYIRVMF 374
PLRA+YIRV+F
Sbjct: 90 PPLRAQYIRVLF 101
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHIMAVGTHALDVGAMTPF 78
+I + +NFGPQHPAAHGVL L E + R+ HI + + PF
Sbjct: 3 EISSYTVNFGPQHPAAHGVLRLVLEMDGEVVRRVDPHIGLLHRATEKLAETKPF 56
>gi|416159332|ref|ZP_11605796.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
N1568]
gi|433472627|ref|ZP_20429997.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97021]
gi|433481051|ref|ZP_20438323.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2006087]
gi|433483173|ref|ZP_20440411.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2002038]
gi|433485274|ref|ZP_20442480.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97014]
gi|325129042|gb|EGC51892.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
N1568]
gi|432212511|gb|ELK68449.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97021]
gi|432219404|gb|ELK75251.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2006087]
gi|432223619|gb|ELK79399.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
2002038]
gi|432224734|gb|ELK80497.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
97014]
Length = 418
Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 197/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
L +NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LNDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKTQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|407785307|ref|ZP_11132455.1| NADH dehydrogenase subunit D [Celeribacter baekdonensis B30]
gi|407203339|gb|EKE73326.1| NADH dehydrogenase subunit D [Celeribacter baekdonensis B30]
Length = 414
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 139/285 (48%), Positives = 200/285 (70%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNH++ T A+DVGA+TP W FEEREK+M FYERA GAR+H+AY RP
Sbjct: 118 IRVLYSEIGRVLNHLLNTTTGAMDVGALTPPLWGFEEREKLMIFYERACGARLHSAYFRP 177
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LL DI + F LD++ +LTENR++ QRT D+G++S ++AL++GFS
Sbjct: 178 GGVHQDLPPELLADIDAWADHFPKILDDIHYLLTENRIFKQRTVDIGVISEQEALDWGFS 237
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+GT+G+ + M+EM +S +I++QA+
Sbjct: 238 GVMVRGSGMAWDLRRAQPYECYDEFDFQIPVGTNGDCYDRYLCRMQEMYESTKIIKQAVA 297
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ E + D + K++ P R++MK G+ +P G Y AVEAPKGE
Sbjct: 298 LLQLPENQGDVLARGKLTPPKRADMKTSMEALIHHFKLYTEGFKLPEGEVYAAVEAPKGE 357
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVY+VSDGT+KPYR K++APG+ HL A++ + KG LAD+ A+I
Sbjct: 358 FGVYMVSDGTNKPYRAKLRAPGYLHLQAMDHMAKGHQLADVSALI 402
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPY DRLDYV+ M E + LA+EKL +E
Sbjct: 51 GEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIEKLAGVE 110
Query: 363 VPLRAKYIRVMFT 375
+P RA IRV+++
Sbjct: 111 IPRRASLIRVLYS 123
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 24/30 (80%)
Query: 26 PVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
P E++IRN INFGPQHPAAHGVL + E+
Sbjct: 20 PGEQKIRNFNINFGPQHPAAHGVLRMVLEL 49
>gi|261378537|ref|ZP_05983110.1| NADH dehydrogenase, D subunit [Neisseria cinerea ATCC 14685]
gi|269145087|gb|EEZ71505.1| NADH dehydrogenase, D subunit [Neisseria cinerea ATCC 14685]
Length = 418
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVTPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDQMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 NKLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|404379857|ref|ZP_10984906.1| NADH-quinone oxidoreductase subunit D [Simonsiella muelleri ATCC
29453]
gi|294484373|gb|EFG32056.1| NADH-quinone oxidoreductase subunit D [Simonsiella muelleri ATCC
29453]
Length = 418
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 144/307 (46%), Positives = 195/307 (63%), Gaps = 48/307 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TRILNH+M VG+HALD+GAMT + F +RE++M+ YE SGARMHAAY RPGGV
Sbjct: 100 MFAEVTRILNHLMGVGSHALDIGAMTAILYAFRDREELMDLYEAVSGARMHAAYFRPGGV 159
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P +LD I F F +D +E +LT+NR+
Sbjct: 160 YRDLPDFMPKYESSKYRNAKVLKELNASREGTMLDFIDAFCERFPKNIDTLETLLTDNRI 219
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VS E AL GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G +G+
Sbjct: 220 WKQRTVGIGVVSPERALQKGFTGVMLRGSGVEWDIRKKQPYEVYDQIDFDIPVGVNGDCY 279
Query: 204 ---VIGMKEMRQSLRIVEQA---INKMPGGEVRTDDMKISTPSRSEMK------------ 245
+ M EMRQS+RI++Q + P V ++ K++ P R++MK
Sbjct: 280 DRYLCRMAEMRQSVRIIKQCADWLRANPNLPVIVENHKVAPPKRTDMKIGMEDLIHHFKL 339
Query: 246 ---GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFL 302
G VP G TYTAVE PKGEFG+Y++SDG +KPYR KI+APGFAHL ++++ +G L
Sbjct: 340 FTEGMHVPEGETYTAVEHPKGEFGIYMISDGANKPYRLKIRAPGFAHLQGMDEMARGHML 399
Query: 303 ADIVAII 309
AD+VAII
Sbjct: 400 ADVVAII 406
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y +A+EKL+ IEVP+RAKY
Sbjct: 37 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCMAIEKLVGIEVPIRAKY 96
Query: 370 IRVMFT 375
IR MF
Sbjct: 97 IRTMFA 102
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 3 KLRNYTINFGPQHPAAHGVLRMILEL 28
>gi|119897690|ref|YP_932903.1| NADH dehydrogenase subunit D [Azoarcus sp. BH72]
gi|218534386|sp|A1K5B1.1|NUOD_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|119670103|emb|CAL94016.1| putative NADH-ubiquinone oxidoreductase chain D [Azoarcus sp. BH72]
Length = 417
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 153/313 (48%), Positives = 196/313 (62%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +GTHALD+GAMT + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLNIGTHALDIGAMTMVLYTFREREDLMDAYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD + F F DE E +
Sbjct: 154 YRPGGVYRDLPDRMPQYQPNKFKNANVVKDLNAARQGSLLDFLDDFTQRFPRYCDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E AL +GFSG M+RGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVTPEQALAWGFSGPMIRGSGIAWDLRKKQPYEVYDKVDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ + M+EMRQS RI+ Q I+ K P G V TD+ K++ PSR +MK
Sbjct: 274 KNGDCYDRYLCRMEEMRQSNRIIRQCIDWLRKNP-GPVITDNHKVAPPSREQMKSNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G VP G Y AVE PKGEFGVY VSDG +KPYR K++APGFAHLAA+++I
Sbjct: 333 IHHFKLFTEGMHVPKGEAYAAVEHPKGEFGVYAVSDGANKPYRLKLRAPGFAHLAAMDEI 392
Query: 297 GKGSFLADIVAII 309
+G +AD+VAII
Sbjct: 393 SRGHMIADVVAII 405
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E +T+ Q++PY DRLDYVSMMCNE Y +A+E+LL +E
Sbjct: 30 GEVVERADPHIGLLHRGTEKLAETRTWVQSVPYMDRLDYVSMMCNEHAYCMAIERLLGVE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN INFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLVLEL 28
>gi|319638817|ref|ZP_07993575.1| NADH dehydrogenase subunit I D [Neisseria mucosa C102]
gi|317399721|gb|EFV80384.1| NADH dehydrogenase subunit I D [Neisseria mucosa C102]
Length = 418
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVTPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|161870820|ref|YP_001599993.1| NADH dehydrogenase subunit D [Neisseria meningitidis 053442]
gi|218534439|sp|A9M3D9.1|NUOD_NEIM0 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|161596373|gb|ABX74033.1| NADH dehydrogenase I chain D [Neisseria meningitidis 053442]
Length = 418
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E A+ GF+GVMLRGSG++WD+RK QPY+ Y+ +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVTPERAMQKGFTGVMLRGSGVEWDVRKKQPYEMYDKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|334142127|ref|YP_004535334.1| NADH dehydrogenase I subunit D [Novosphingobium sp. PP1Y]
gi|333940158|emb|CCA93516.1| NADH dehydrogenase I subunit D [Novosphingobium sp. PP1Y]
Length = 403
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 192/286 (67%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+A+
Sbjct: 106 AQYLRVLFAELTRICNHMLNIGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAW 165
Query: 105 VRPGGVALDIPIGLLDDIYHFIST-FSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ T ++ ++ +NR++ QR D+ +VS EDAL
Sbjct: 166 FRPGGVHQDVPLKLLTDIADWLDTRLPTLFEDAMSLVVDNRIFKQRNVDIALVSREDALA 225
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+R +GI WD+RK QPYD Y+ +F+IP+GT+ + ++ ++E+RQS RI++
Sbjct: 226 WGFSGPMIRAAGIPWDIRKSQPYDVYDRMDFEIPVGTNSDCYDRFMVRVEEVRQSARIMK 285
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + +MP G V T D K+ P R EMK G+ VP G Y A E+PKG
Sbjct: 286 QCLAEMPEGPVMTADRKVGPPKRGEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKG 345
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+ F+HL A++ + KG L D AI+
Sbjct: 346 EFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAIL 391
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPH+GLLHRGTEKLIE KTY QALPYFDRLDY S + E Y LA+EKLLN+E
Sbjct: 42 GEVIERIDPHVGLLHRGTEKLIENKTYLQALPYFDRLDYCSPLGMEHSYVLAIEKLLNLE 101
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 102 VPLRAQYLRVLFA 114
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
I N INFGPQHPAAHGVL + E I RI H+
Sbjct: 16 ISNYTINFGPQHPAAHGVLRMVMELDGEVIERIDPHV 52
>gi|359401536|ref|ZP_09194504.1| NADH dehydrogenase I subunit D [Novosphingobium pentaromativorans
US6-1]
gi|357597211|gb|EHJ58961.1| NADH dehydrogenase I subunit D [Novosphingobium pentaromativorans
US6-1]
Length = 401
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 192/286 (67%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G+H +DVGAMTP WLFE RE + F+ERASGARMH+A+
Sbjct: 104 AQYLRVLFAELTRICNHMLNIGSHVMDVGAMTPNLWLFEIREDCLNFFERASGARMHSAW 163
Query: 105 VRPGGVALDIPIGLLDDIYHFIST-FSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P+ LL DI ++ T ++ ++ +NR++ QR D+ +VS EDAL
Sbjct: 164 FRPGGVHQDVPLKLLTDIADWLDTRLPTLFEDAMSLVVDNRIFKQRNVDIALVSREDALA 223
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+R +GI WD+RK QPYD Y+ +F+IP+GT+ + ++ ++E+RQS RI++
Sbjct: 224 WGFSGPMIRAAGIPWDIRKSQPYDVYDRMDFEIPVGTNSDCYDRFMVRVEEVRQSARIMK 283
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + +MP G V T D K+ P R EMK G+ VP G Y A E+PKG
Sbjct: 284 QCLAEMPEGPVMTADRKVGPPKRGEMKSSMESLIHHFKLYTEGFHVPAGEVYVATESPKG 343
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+ F+HL A++ + KG L D AI+
Sbjct: 344 EFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMSKGHMLPDATAIL 389
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPH+GLLHRGTEKLIE KTY QALPYFDRLDY S + E Y LA+EKLLN+E
Sbjct: 40 GEVIERIDPHVGLLHRGTEKLIENKTYLQALPYFDRLDYCSPLGMEHSYVLAIEKLLNLE 99
Query: 363 VPLRAKYIRVMFT 375
VPLRA+Y+RV+F
Sbjct: 100 VPLRAQYLRVLFA 112
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
I N INFGPQHPAAHGVL + E I RI H+
Sbjct: 14 ISNYTINFGPQHPAAHGVLRMVMELDGEVIERIDPHV 50
>gi|294677057|ref|YP_003577672.1| NADH-quinone oxidoreductase subunit D [Rhodobacter capsulatus SB
1003]
gi|6647646|sp|O07310.2|NUOD_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|3282562|gb|AAC24988.1| NUOD [Rhodobacter capsulatus]
gi|294475877|gb|ADE85265.1| NADH-quinone oxidoreductase, D subunit [Rhodobacter capsulatus SB
1003]
Length = 413
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 140/285 (49%), Positives = 195/285 (68%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HA Y RP
Sbjct: 117 IRVLFSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHANYFRP 176
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F LD++E +LTENR++ QR D+ I++ + +G+S
Sbjct: 177 GGVHQDLPPDLIDDIEIWAKAFPQVLDDIEGLLTENRIFKQRNADICIITEAEIEKWGYS 236
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F + +G +G+ ++ M EMR+S +I+ QA
Sbjct: 237 GVMVRGSGLAWDLRRAQPYECYDEFDFKVAVGKNGDCYDRYLVRMAEMRESTKIILQACA 296
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ + + D + K++ P R+EMK G+ VP G Y AVEAPKGE
Sbjct: 297 KLRAPDGQGDILARGKLTPPKRAEMKTSMEALIHHFKLYTEGFKVPAGEVYAAVEAPKGE 356
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR KI+APG+AHL +++ + KG LAD+ AII
Sbjct: 357 FGVYLVADGTNKPYRAKIRAPGYAHLQSIDAVAKGHQLADVSAII 401
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q PYFDRLDYV+ M E + LA+EKL
Sbjct: 50 GEIVERADPHIGLLHRGTEKLMESRTYLQNTPYFDRLDYVAPMNQEHAWCLAIEKLTGTA 109
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+F+
Sbjct: 110 VPRRASIIRVLFS 122
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 21 NDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+++++ E+ IRN INFGPQHPAAHGVL + E+
Sbjct: 14 SEDVLTGEQSIRNFNINFGPQHPAAHGVLRMVLEL 48
>gi|85708751|ref|ZP_01039817.1| NADH dehydrogenase delta subunit [Erythrobacter sp. NAP1]
gi|85690285|gb|EAQ30288.1| NADH dehydrogenase delta subunit [Erythrobacter sp. NAP1]
Length = 403
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 191/286 (66%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G H +DVGAMTP W+FE RE + F+ERASGARMH+A+
Sbjct: 106 AQYLRVLFAELTRICNHMLNIGAHVMDVGAMTPNLWVFELREDCLNFFERASGARMHSAW 165
Query: 105 VRPGGVALDIPIGLLDDIYHFIST-FSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
RPGGV D+P LL DI ++ F D+ ++ +NR++ QR D+ +VS +DA+
Sbjct: 166 FRPGGVHQDVPEKLLVDIGDWLDNRFFQLFDDAMSLVMDNRIFKQRNVDIAVVSRDDAVA 225
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+R +GI WDLRK QPYD Y+ EFDIP+GT+ + ++ ++E+R+S +I++
Sbjct: 226 WGFSGPMIRAAGIPWDLRKSQPYDVYDRMEFDIPVGTNSDCYDRFMVRVQEVRESAKIIK 285
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + MP G + + D K+S P R EMK G+ VP G Y A E+PKG
Sbjct: 286 QCLRDMPEGPIASTDGKVSPPKRGEMKQSMESLIHHFKLYTEGFHVPAGEVYVATESPKG 345
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDGT+KPYRCKI+ F+HL A++ + KG LAD AI+
Sbjct: 346 EFGVYLVSDGTNKPYRCKIRPTAFSHLQAMDMMSKGHMLADATAIL 391
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ +DPH+GLLHRGTEKLIE KTY QALPYFDRLDY S +C E Y LA+EKLLNIE
Sbjct: 42 GEVIERVDPHVGLLHRGTEKLIEQKTYLQALPYFDRLDYCSPLCQEHSYVLAIEKLLNIE 101
Query: 363 VPLRAKYIRVMFT 375
VP RA+Y+RV+F
Sbjct: 102 VPERAQYLRVLFA 114
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I N +NFGPQHPAAHGVL + E+
Sbjct: 16 ITNYTLNFGPQHPAAHGVLRMVMEL 40
>gi|377821142|ref|YP_004977513.1| NADH dehydrogenase I subunit D [Burkholderia sp. YI23]
gi|357935977|gb|AET89536.1| NADH dehydrogenase I, D subunit [Burkholderia sp. YI23]
Length = 417
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 153/310 (49%), Positives = 193/310 (62%), Gaps = 49/310 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EITR+LNH+M +G+HALDVGAM F + F ERE +M+ YE SGARMHAAY RP
Sbjct: 97 IRVLFDEITRVLNHLMWIGSHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRP 156
Query: 108 GGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P LLD I F F +DE E +LT+
Sbjct: 157 GGVYRDLPDAMPQYKASKIRNAKALDRMNETRQGSLLDFIEDFFKRFPRCVDEYETLLTD 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QR +G+VS E AL G SG MLRGSGI+WDLRK QPY+ Y+ +FDIP+G +G
Sbjct: 217 NRIWKQRLVGIGVVSPERALQMGLSGAMLRGSGIEWDLRKKQPYEVYDQLDFDIPVGVNG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK--------- 245
+ ++ ++EMRQS RI EQ I K P G V D+ K++ PSR MK
Sbjct: 277 DCYDRYLVRVEEMRQSTRIAEQCIAWLRKNP-GPVMVDNHKVAPPSRVGMKSNMEELIHH 335
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
G+ VP G TY AVE PKGEFG+YLVSDG +KPYR KI+APG+AHLAAL+++ +G
Sbjct: 336 FKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLAALDEMARG 395
Query: 300 SFLADIVAII 309
+AD V II
Sbjct: 396 HMIADAVTII 405
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RAKYIRV+F
Sbjct: 90 VPIRAKYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|383644209|ref|ZP_09956615.1| NADH dehydrogenase subunit D [Sphingomonas elodea ATCC 31461]
Length = 409
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/281 (49%), Positives = 189/281 (67%), Gaps = 21/281 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LFAE+TRI NH++ +G+H +DVGAMTP W+FE RE + F+ERASGARMH+ Y R GG
Sbjct: 117 VLFAELTRICNHMLNLGSHVMDVGAMTPNLWMFEIREDCLNFFERASGARMHSNYYRVGG 176
Query: 110 VALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSG 168
V D+P+ LL+DI ++ T +L + ++ ENR++ QR D+ VS EDA+ +GFSG
Sbjct: 177 VRQDVPVKLLNDIAEWLDTRLPQLFGDAISLVAENRIFKQRNVDIATVSREDAIKWGFSG 236
Query: 169 VMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINK 223
M+R +GI WD+R+ QPYD Y+ +F+IP+GT G+ ++ ++E+ QS RI++Q I
Sbjct: 237 PMIRAAGIPWDIRRAQPYDVYDRVDFEIPVGTRGDCYDRFMVRVEEVYQSARIIKQCIQD 296
Query: 224 MPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVY 268
MP G V T D K+ P R EMK GY VP G Y A E+PKGEFGVY
Sbjct: 297 MPEGPVLTLDRKVGAPKRGEMKQSMEALIHHFKLFTEGYHVPAGEVYVATESPKGEFGVY 356
Query: 269 LVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
LVSDGT+KPYRCK++ F+HL A++ + KG LADI AI+
Sbjct: 357 LVSDGTNKPYRCKVRPTAFSHLQAMDFMSKGHMLADITAIL 397
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ IDPH+GLLHRGTEKLIEYKTYTQALPYFDR DY S + E Y LAVEKLL++E
Sbjct: 48 GEIIERIDPHVGLLHRGTEKLIEYKTYTQALPYFDRFDYCSPLAMEHSYVLAVEKLLDLE 107
Query: 363 VPLRAKYIRVMFT 375
VPLR +Y+RV+F
Sbjct: 108 VPLRGQYLRVLFA 120
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+ I N INFGPQHPAAHGVL L E I RI H+
Sbjct: 19 DTSIANYTINFGPQHPAAHGVLRLVTELDGEIIERIDPHV 58
>gi|261856547|ref|YP_003263830.1| NADH dehydrogenase I subunit D [Halothiobacillus neapolitanus c2]
gi|261837016|gb|ACX96783.1| NADH dehydrogenase I, D subunit [Halothiobacillus neapolitanus c2]
Length = 417
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/313 (48%), Positives = 197/313 (62%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +G HALD+GAMT F + F ERE +M+ YE SGAR+HA Y
Sbjct: 94 AQYIRVMFDEITRILNHLLWLGAHALDIGAMTVFLYAFREREDLMDCYEAVSGARLHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGVA D+P LLD + F F +DE E +
Sbjct: 154 YRPGGVARDLPDSMPQYEKSQWHSERDVRRMNESRQGSLLDFLEDFTQRFPGYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT D+GIV + A+ GF+G MLRGSGI+WDLRK QPY Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVDIGIVPPDRAIALGFTGPMLRGSGIEWDLRKKQPYAVYDQLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
G+ ++ ++EMRQS RI+ Q I+ K P G V D+ KI+ P R E+K
Sbjct: 274 VTGDCYDRYLVRVEEMRQSNRIITQCIDWLRKNP-GPVMVDNRKIAPPRREEVKADMESL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
GY +P G TY AVE PKGEFG+YLVSDG +KPYR KI+APGFAHL+AL+++
Sbjct: 333 IHHFKLFTEGYCLPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLSALDEM 392
Query: 297 GKGSFLADIVAII 309
+G LAD+VAII
Sbjct: 393 SRGHMLADVVAII 405
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 54/65 (83%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E K Y Q++ Y DRLDYVSMMCNE Y A+E+L+N+E+P RA+Y
Sbjct: 37 DPHIGLLHRGTEKLAESKPYNQSIGYMDRLDYVSMMCNEHAYVRAIEQLVNLEIPERAQY 96
Query: 370 IRVMF 374
IRVMF
Sbjct: 97 IRVMF 101
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I N +NFGPQHP+AHGVL L E+
Sbjct: 3 EIANYTLNFGPQHPSAHGVLRLVLEM 28
>gi|321466994|gb|EFX77986.1| hypothetical protein DAPPUDRAFT_305286 [Daphnia pulex]
Length = 229
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 171/267 (64%), Gaps = 70/267 (26%)
Query: 63 MAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDI 122
M +GTHALD+GA+TPFFWLFEEREK+MEF E
Sbjct: 1 MQIGTHALDIGALTPFFWLFEEREKIMEFSEC---------------------------- 32
Query: 123 YHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRK 182
+W QRT D+GIVSAEDAL+YGFSGVMLRGSGIKWDLRK
Sbjct: 33 ----------------------IWKQRTVDIGIVSAEDALHYGFSGVMLRGSGIKWDLRK 70
Query: 183 VQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKIS 237
QPYD Y+ EFD+P+G G+ + ++EMR+SL I++Q +NKMP GEVR DD KI
Sbjct: 71 TQPYDAYDLVEFDVPVGLKGDYYDRYLCRVEEMRESLHIIDQCLNKMPAGEVRVDDAKIM 130
Query: 238 TPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKI 282
P RSEM +GY VPPGATYTAVE PKGEFGVYLVSDG+S+PYRCKI
Sbjct: 131 APKRSEMETSMEALIHHFKLFTQGYNVPPGATYTAVENPKGEFGVYLVSDGSSRPYRCKI 190
Query: 283 KAPGFAHLAALEKIGKGSFLADIVAII 309
KAPGFAHLAALEK+G+ LADIVAII
Sbjct: 191 KAPGFAHLAALEKVGRNHMLADIVAII 217
>gi|433466360|ref|ZP_20423823.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
87255]
gi|432205148|gb|ELK61179.1| NADH dehydrogenase (quinone), D subunit [Neisseria meningitidis
87255]
Length = 418
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 197/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYGKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQCMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|350563171|ref|ZP_08931993.1| NADH dehydrogenase I, D subunit [Thioalkalimicrobium aerophilum
AL3]
gi|349779035|gb|EGZ33382.1| NADH dehydrogenase I, D subunit [Thioalkalimicrobium aerophilum
AL3]
Length = 417
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +G HALD+GAMT F + F ERE +M+ YE SGARMHA Y
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGAHALDIGAMTVFLYAFREREDLMDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPETMAKYSESPWHKGKDLAKLNETREGSLLDFIEAFTERFPGYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT D+GIVS E AL GFSG MLRGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVDIGIVSPERALQLGFSGPMLRGSGIAWDLRKKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ + EMR+S +I++Q + K G V D+ K++ PSR + K
Sbjct: 274 KTGDSYDRYLVRVAEMRESNKIIKQCVQWLKANPGPVIADNHKVTPPSRVDAKSNMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ PPG Y+AVE PKGEFGVYLVSDG +KPYR KI+APGF HLAAL+++
Sbjct: 334 HHFKLFTEGFITPPGEVYSAVEHPKGEFGVYLVSDGANKPYRLKIRAPGFPHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD+V II
Sbjct: 394 KGHMIADVVTII 405
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 54/65 (83%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL EYK Y Q++ Y DRLDYVSMM NE Y LA+EKLL +EVP RA+Y
Sbjct: 37 DPHIGLLHRGTEKLAEYKPYNQSIGYMDRLDYVSMMANEHGYVLAIEKLLGVEVPERAQY 96
Query: 370 IRVMF 374
IRVMF
Sbjct: 97 IRVMF 101
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHP+AHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPSAHGVLRLVLEL 28
>gi|385339286|ref|YP_005893158.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
G2136]
gi|416200262|ref|ZP_11619577.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
961-5945]
gi|416200337|ref|ZP_11619603.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
961-5945]
gi|325143085|gb|EGC65432.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
961-5945]
gi|325143155|gb|EGC65501.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
961-5945]
gi|325197530|gb|ADY92986.1| NADH:ubiquinone dehydrogenase, D subunit [Neisseria meningitidis
G2136]
Length = 418
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 197/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAE+TRILNH+M +G+HA D+GAMT + F +RE++M+ YE SGARMHAAY
Sbjct: 95 AQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAILYAFRDREELMDLYEAVSGARMHAAY 154
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +D +E +
Sbjct: 155 FRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNESREGTMLDFIDAFCERFPKNIDTLETL 214
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+GVMLRGSG++WD+RK QPY+ Y +FDIP+G
Sbjct: 215 LTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGSGVEWDVRKKQPYEVYGKMDFDIPVG 274
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS+RI++Q ++ G V T + K + P R+EMK
Sbjct: 275 VNGDCYDRYLCRMEEMRQSVRIIKQCSEWLRVNPGPVITTNHKFAPPKRTEMKTGMEDLI 334
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TYTAVE PKGEFGVY++SDG +KPYR KI+APGFAHL ++++
Sbjct: 335 HHFKLFTEGMHVPEGETYTAVEHPKGEFGVYIISDGANKPYRLKIRAPGFAHLQGMDEMA 394
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 395 KGHMLADVVAII 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL E KTY QALPY DRLDYVSMM NEQ Y LAVEKL I+VP+RA+Y
Sbjct: 38 DPHIGLLHRGTEKLAETKTYLQALPYMDRLDYVSMMVNEQAYCLAVEKLAGIDVPIRAQY 97
Query: 370 IRVMFT 375
IRVMF
Sbjct: 98 IRVMFA 103
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
++RN INFGPQHPAAHGVL + E+
Sbjct: 4 KLRNYTINFGPQHPAAHGVLRMILEL 29
>gi|260223139|emb|CBA33403.1| NADH-quinone oxidoreductase subunit D [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 417
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/312 (48%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++++EITR+LNH+M +G+H D G+ T + F ERE + + YE ASGARMHAAY
Sbjct: 94 AQYIRVMYSEITRLLNHLMWLGSHGNDCGSSTILIYTFREREDLFDMYEAASGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F A LDE +
Sbjct: 154 FRPGGVYRDLPDTMPQFKASKVRNAKGVEELNRNRQGSLLDFIDDFAQRFPACLDEYHTL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LTENR+W QRT ++GIVS E ALN GFSG MLRGSGI WDLRK QPYD Y+ EFDIP+G
Sbjct: 214 LTENRIWKQRTVNIGIVSPERALNMGFSGPMLRGSGIAWDLRKKQPYDAYDKVEFDIPVG 273
Query: 200 THGNV-----IGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+V + M+EM+QS RI++Q ++ K G V TD+ K++ PSR MK
Sbjct: 274 KTGDVYDRYLVRMEEMKQSNRIIKQCVDWLKANPGPVITDNHKVAPPSREAMKTSMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFG+Y+VSDG +KPYR KI+ PGF HLAAL ++
Sbjct: 334 HHFKLFTEGFRVPEGEAYAAVEHPKGEFGIYIVSDGANKPYRLKIRPPGFVHLAALNEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V+II
Sbjct: 394 KGHMIADAVSII 405
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q+LPY DRLDYVSMMCNE Y LA+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTYIQSLPYMDRLDYVSMMCNEHAYCLAIEKLLGIE 89
Query: 363 VPLRAKYIRVMFT 375
VP+RA+YIRVM++
Sbjct: 90 VPIRAQYIRVMYS 102
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|345873387|ref|ZP_08825299.1| NAD(P)H-quinone oxidoreductase subunit H [Thiorhodococcus drewsii
AZ1]
gi|343917275|gb|EGV28081.1| NAD(P)H-quinone oxidoreductase subunit H [Thiorhodococcus drewsii
AZ1]
Length = 418
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 191/313 (61%), Gaps = 48/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH+M + HALD+GAM+ F + F ERE +M+ YE SGARMHA Y
Sbjct: 94 AQYIRTLFDEITRILNHLMWLAAHALDIGAMSVFLYCFREREDLMDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI--------------------------GLLDDIYHFISTFSARLDEVED 138
RPGGV D+P LLD I F F +DE E
Sbjct: 154 YRPGGVHRDLPDRMPQYQGSSKWHSERTIAKRNGARQGSLLDFIEDFTERFPTHVDEYET 213
Query: 139 MLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPI 198
+LT+NR+W QRT D+G+VS E A GF+G MLRGSGI WDLRK QPY Y+ +FDIP+
Sbjct: 214 LLTDNRIWKQRTVDIGVVSPERATQLGFTGPMLRGSGIAWDLRKKQPYAAYDKVDFDIPV 273
Query: 199 GTHGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------ 245
G +G+ ++ M+EMRQS RI++ ++ ++ G V DD KI P R+EMK
Sbjct: 274 GVNGDCYDRYLVRMEEMRQSNRIIKHCVDWLRVNPGPVSIDDHKIVPPKRAEMKGDMEAL 333
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
GY P G Y AVEAPKGEFG ++VSDG +KPYR K++APGF HLAAL+++
Sbjct: 334 IHHFKLFTEGYCPPAGEVYAAVEAPKGEFGCFIVSDGANKPYRLKVRAPGFPHLAALDEM 393
Query: 297 GKGSFLADIVAII 309
+G LAD+VAII
Sbjct: 394 SRGHMLADVVAII 406
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 55/72 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPH+GLLHR TEKL EYK Y Q++ Y DRLDYVSMMCNE Y A+EKLL +E
Sbjct: 30 GEVIERADPHVGLLHRATEKLAEYKPYNQSIGYMDRLDYVSMMCNEHGYVRAIEKLLGVE 89
Query: 363 VPLRAKYIRVMF 374
P+RA+YIR +F
Sbjct: 90 PPVRAQYIRTLF 101
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLEL 28
>gi|402850662|ref|ZP_10898855.1| NADH-ubiquinone oxidoreductase chain D [Rhodovulum sp. PH10]
gi|402499099|gb|EJW10818.1| NADH-ubiquinone oxidoreductase chain D [Rhodovulum sp. PH10]
Length = 396
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/284 (50%), Positives = 191/284 (67%), Gaps = 24/284 (8%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRI NHI+ V T ALD+GA+TP W FE+REK+M FYERASGARMHA Y RPGG
Sbjct: 101 VLFLELTRIKNHILNVTTGALDIGALTPPLWGFEDREKIMGFYERASGARMHANYFRPGG 160
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
V D+ LLDDI + F + L +++ +LTENR++ QR D+G+++ +D +GFSG
Sbjct: 161 VHQDVTPKLLDDIAAWCDPFLSTLADLDALLTENRIFKQRMVDIGVMTLKDCWGWGFSGP 220
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
++R +G WDLR+ +PY+ Y FDIPIG HG+ ++ M+EMRQS+RI+ Q + K+
Sbjct: 221 LVRAAGAAWDLRRAEPYECYSELAFDIPIGKHGDCYDRYLVRMEEMRQSIRIIRQCLEKL 280
Query: 225 --PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
P G+ V ++ K P R EMK G+ VPPG Y A E PKGE
Sbjct: 281 AQPDGQGPVLPENNKYVPPRRGEMKRSMEALIHHFKLYTEGFHVPPGEVYAAAETPKGEL 340
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLV+DGT+KPY+CKI+A GFAHL+A++ + KG +ADI AII
Sbjct: 341 GVYLVADGTNKPYKCKIRATGFAHLSAIDFLSKGHLMADITAII 384
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPH+GLLHRGTEKLIEYKTY QA+PYFDRLDY S M E + +AVEKLL +
Sbjct: 32 GEVIERADPHVGLLHRGTEKLIEYKTYLQAIPYFDRLDYSSPMSQEHVFCMAVEKLLGLA 91
Query: 363 VPLRAKYIRVMF 374
VP RA+ +RV+F
Sbjct: 92 VPRRAQLLRVLF 103
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +R+ INFGPQHP+AHGVL L ++
Sbjct: 2 AEASVRSFTINFGPQHPSAHGVLRLLLDL 30
>gi|82702223|ref|YP_411789.1| NADH dehydrogenase subunit D [Nitrosospira multiformis ATCC 25196]
gi|123544730|sp|Q2YA24.1|NUOD_NITMU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|82410288|gb|ABB74397.1| NADH dehydrogenase subunit D [Nitrosospira multiformis ATCC 25196]
Length = 417
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 198/313 (63%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +G HALDVGAMT F + F +RE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLWLGAHALDVGAMTVFLYAFRDREDLMDAYESVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDSMPQYKASKIHDEKTTKARNENRQGSLLDFIEDFTNRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G VS E A+ GF+G MLRGSG++WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGTVSPERAMALGFTGPMLRGSGVEWDLRKKQPYEVYDQLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++E RQS RI+ Q ++ K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRIEEFRQSNRIIRQCVDWLRKNP-GPVITDNHKVAPPSRVNMKQNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VPPG TY AVE PKGEFG+YL+SDG + PYR KI+APGFAHLAAL+++
Sbjct: 333 IHHFKLFTEGFHVPPGETYAAVEHPKGEFGIYLISDGANMPYRMKIRAPGFAHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD+VAII
Sbjct: 393 SRGHMIADVVAII 405
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL EYKTY Q++PY DRLDYVSMM NE Y +A+EKLL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEYKTYIQSVPYMDRLDYVSMMANEHAYVMAIEKLLQLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|395763175|ref|ZP_10443844.1| NADH dehydrogenase subunit D [Janthinobacterium lividum PAMC 25724]
Length = 417
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 197/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F E+TRILNH+M +GTHALDVGAM PF + F +RE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEMTRILNHLMWLGTHALDVGAMGPFLYCFRDREDLFDAYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQHKASIIRNAKAISKLNENRQGSLLDFIEDFARRFPNSVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS EDAL GF+G MLRGSG++WDLRK QPY+ Y+ +FDIPIG
Sbjct: 214 LTDNRIWKQRTVGIGVVSPEDALAMGFTGAMLRGSGVQWDLRKKQPYEVYDLMDFDIPIG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPGGE--VRTDDMKISTPSRSEMK------- 245
T+G+ ++ ++E+RQS RI++Q + + E V T + K++ P R +MK
Sbjct: 274 TNGDCYDRYLVRVEELRQSNRIIKQCVEWLRNNEGPVMTSNRKVAPPGRVDMKTNMESLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VPPG Y+AVE PKGEFGVYLVSDG +KPYR K++AP +AHL +L+++
Sbjct: 334 HHFKLFTEGFHVPPGEAYSAVEHPKGEFGVYLVSDGANKPYRMKLRAPDYAHLQSLDEMA 393
Query: 298 KGSFLADIVAII 309
+G LAD V II
Sbjct: 394 RGHMLADAVTII 405
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q++PY DRLDYVSMMCNE Y +A+EK+L +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTYLQSVPYMDRLDYVSMMCNEHAYVMAIEKMLGLE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEM 28
>gi|344342323|ref|ZP_08773194.1| NAD(P)H-quinone oxidoreductase subunit H [Marichromatium purpuratum
984]
gi|343805659|gb|EGV23554.1| NAD(P)H-quinone oxidoreductase subunit H [Marichromatium purpuratum
984]
Length = 419
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 189/314 (60%), Gaps = 49/314 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++ EITRILNH+M + HALD+GAM+ F + F ERE + + YE SGARMHA Y
Sbjct: 94 AQYIRTMYDEITRILNHLMWLAAHALDIGAMSVFLYCFREREDLFDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI---------------------------GLLDDIYHFISTFSARLDEVE 137
RPGGV D+P LLD + F F +DE E
Sbjct: 154 YRPGGVNRDLPERMPQFDKAGSKWHGAKEMTRRNANRQGSLLDFLEDFTERFPKHVDEYE 213
Query: 138 DMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIP 197
+LT+NR+W QRT +G+VS E A GF+G MLRGSGI WDLRK QPY Y+ +FDIP
Sbjct: 214 TLLTDNRIWKQRTVGIGVVSPERAQALGFTGPMLRGSGIAWDLRKKQPYAAYDKVDFDIP 273
Query: 198 IGTHGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK----- 245
IG +G+ ++ M+EMRQS RI+ Q I+ + G VR DD K+ PSR MK
Sbjct: 274 IGVNGDCYDRYLVRMEEMRQSNRIIRQCIDWLRANPGPVRIDDAKVIAPSRERMKEDMEA 333
Query: 246 ----------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEK 295
GY PPG Y AVEAPKGEFG Y+VSDG +KPYR KI+APGF HLAAL++
Sbjct: 334 LIHHFKLFSEGYCTPPGEVYAAVEAPKGEFGCYIVSDGANKPYRLKIRAPGFPHLAALDE 393
Query: 296 IGKGSFLADIVAII 309
+ +G +AD+VAII
Sbjct: 394 MSRGHMIADVVAII 407
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 54/72 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPH+GLLHR TEKL E K Y Q++ Y DRLDYVSMMCNE Y A+E+LL +E
Sbjct: 30 GEVIQRADPHVGLLHRATEKLAESKPYNQSIGYMDRLDYVSMMCNEHGYVRAIEQLLGVE 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIR M+
Sbjct: 90 VPERAQYIRTMY 101
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN INFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLVLEL 28
>gi|323525439|ref|YP_004227592.1| NADH dehydrogenase I subunit D [Burkholderia sp. CCGE1001]
gi|407712810|ref|YP_006833375.1| NADH-quinone oxidoreductase subunit D [Burkholderia phenoliruptrix
BR3459a]
gi|323382441|gb|ADX54532.1| NADH dehydrogenase I, D subunit [Burkholderia sp. CCGE1001]
gi|407234994|gb|AFT85193.1| NADH-quinone oxidoreductase subunit D [Burkholderia phenoliruptrix
BR3459a]
Length = 417
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/313 (48%), Positives = 195/313 (62%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNAKALSKMNENRQGSLLDFIDDFFTRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G SG MLRGSG++WDLRK QPY+ YE +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQLGMSGAMLRGSGVEWDLRKKQPYEVYEKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RIV+Q I K P G V D+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSTRIVKQCIEWLRKNP-GPVMIDNHKVAPPSRVGMKSNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G TY AVE PKGEFG+YL+SDG +KPYR KI+APG+AHL+AL+++
Sbjct: 333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGYAHLSALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTFIQSVPYMDRLDYVSMMVNEHGYVMAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPVRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|413958289|ref|ZP_11397528.1| NADH dehydrogenase subunit D [Burkholderia sp. SJ98]
gi|413940869|gb|EKS72829.1| NADH dehydrogenase subunit D [Burkholderia sp. SJ98]
Length = 417
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/310 (48%), Positives = 194/310 (62%), Gaps = 49/310 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EITR+LNH+M +G+HALDVGAM F + F ERE +M+ YE SGARMHAAY RP
Sbjct: 97 IRVLFDEITRVLNHLMWIGSHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRP 156
Query: 108 GGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P LLD I F + F +DE E +LT+
Sbjct: 157 GGVYRDLPDAMPQYKASKIRNAKALDKMNENRQGSLLDFIEDFFNRFPGCVDEYETLLTD 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QR +G+VS E AL G SG MLRGSGI+WDLRK QPY+ Y+ +FDIP+G +G
Sbjct: 217 NRIWKQRLVGIGVVSPERALQMGLSGAMLRGSGIEWDLRKKQPYEVYDQLDFDIPVGVNG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK--------- 245
+ ++ ++EMRQS RI +Q I K P G V D+ K++ PSR MK
Sbjct: 277 DCYDRYLVRVEEMRQSTRIAKQCIAWLRKNP-GPVMVDNHKVAPPSRVGMKSNMEELIHH 335
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
G+ VP G TY AVE PKGEFG+YL+SDG +KPYR KI+APG+AHLAAL+++ +G
Sbjct: 336 FKLFTEGFHVPEGETYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGYAHLAALDEMARG 395
Query: 300 SFLADIVAII 309
+AD V II
Sbjct: 396 HMIADAVTII 405
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTFLQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RAKYIRV+F
Sbjct: 90 VPIRAKYIRVLF 101
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|430805949|ref|ZP_19433064.1| NADH dehydrogenase subunit D [Cupriavidus sp. HMR-1]
gi|429501777|gb|ELA00104.1| NADH dehydrogenase subunit D [Cupriavidus sp. HMR-1]
Length = 417
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 196/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G+HALDVGAM F + F ERE M + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGSHALDVGAMAVFLYAFREREDMFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYRASKVHNEKAIKVMNEARSGSLLDFIEDFTNRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR D+G+V+ E AL GF+G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVDIGVVTPERALQMGFTGPMLRGSGIEWDLRKKQPYEVYDKMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
T G+ ++ ++EMRQS RI++Q I+ + G V T++ K++ PSR +MK
Sbjct: 274 TAGDCYSRYLVRVEEMRQSNRIIKQCIDWLRRNPGPVITENHKVAPPSRVDMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y AVE PKGEFG+Y +SDG +KPYR KI+APGFAHLAAL+++
Sbjct: 334 HHFKLFTEGIHVPAGEAYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFAHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q +PY DRLDYVSMM NE Y +A+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQNVPYMDRLDYVSMMVNEHAYVMAIERLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|344337379|ref|ZP_08768313.1| NAD(P)H-quinone oxidoreductase subunit H [Thiocapsa marina 5811]
gi|343802332|gb|EGV20272.1| NAD(P)H-quinone oxidoreductase subunit H [Thiocapsa marina 5811]
Length = 418
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 192/313 (61%), Gaps = 48/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M + H LD+GAMT F + F ERE +++ YE SGARMHA Y
Sbjct: 94 AQYIRTMFDEITRILNHLMWLAAHGLDIGAMTVFLYCFREREDLLDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI--------------------------GLLDDIYHFISTFSARLDEVED 138
RPGGV D+P LLD I F F +DE E
Sbjct: 154 YRPGGVYRDLPDRMPQYSGSSKWHSAKTIAKRNGPRQGSLLDFIEDFADRFPGHVDEYET 213
Query: 139 MLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPI 198
+LT+NR+W QRT +G+VS E AL GF+G MLRGSG++WDLRK QPY Y+ +FDIP+
Sbjct: 214 LLTDNRIWKQRTVGIGVVSPERALQLGFTGPMLRGSGVEWDLRKKQPYAAYDKMDFDIPV 273
Query: 199 GTHGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------ 245
G +G+ ++ M+EMRQS RIV+Q + + G V +D K+ PSR++MK
Sbjct: 274 GVNGDCYDRYLVRMEEMRQSNRIVKQCVQWLRDNPGPVAIEDHKVMPPSRADMKDDMEAL 333
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
GY PPG Y AVEAPKGEFG Y+VSDG +KPYR K++APGF HLAAL+++
Sbjct: 334 IHHFKLFTEGYCPPPGEVYAAVEAPKGEFGCYIVSDGANKPYRLKVRAPGFPHLAALDEM 393
Query: 297 GKGSFLADIVAII 309
+G LAD+VAII
Sbjct: 394 SQGHMLADVVAII 406
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 53/72 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E K + Q++ Y DRLDYVSMMCNE Y A+EKLL +E
Sbjct: 30 GEVIERADPHIGLLHRATEKLAESKPFNQSIGYMDRLDYVSMMCNEHGYVRAIEKLLGVE 89
Query: 363 VPLRAKYIRVMF 374
P RA+YIR MF
Sbjct: 90 APERAQYIRTMF 101
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLEM 28
>gi|334143735|ref|YP_004536891.1| NAD(P)H-quinone oxidoreductase subunit H [Thioalkalimicrobium
cyclicum ALM1]
gi|333964646|gb|AEG31412.1| NAD(P)H-quinone oxidoreductase subunit H [Thioalkalimicrobium
cyclicum ALM1]
Length = 417
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +G HALD+GAMT F + F ERE +M+ YE SG RMHA Y
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGAHALDIGAMTVFLYAFREREDLMDCYEAVSGTRMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMSKYSESPWHKGKDLNKLNETREGSLLDFIEAFTERFPGYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT D+GIVS E AL GFSG MLRGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVDIGIVSPERALQLGFSGPMLRGSGIAWDLRKKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ + EMR+S +I++Q + K G V D+ K++ PSR + K
Sbjct: 274 KTGDSYDRYLVRVAEMRESNKIIKQCVQWLKANPGPVIADNHKVTPPSRVDAKSNMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ PPG Y+AVE PKGEFGVYLVSDG +KPYR KI+APGF HLAAL+++
Sbjct: 334 HHFKLFTEGFITPPGEVYSAVEHPKGEFGVYLVSDGANKPYRLKIRAPGFPHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD+V II
Sbjct: 394 KGHMIADVVTII 405
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 54/65 (83%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKL EYK Y Q++ Y DRLDYVSMM NE Y LA+EKLL ++VP RA+Y
Sbjct: 37 DPHIGLLHRGTEKLAEYKPYNQSIGYMDRLDYVSMMVNEHGYVLAIEKLLGVKVPERAQY 96
Query: 370 IRVMF 374
IRVMF
Sbjct: 97 IRVMF 101
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHP+AHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPSAHGVLRLVLEL 28
>gi|256072246|ref|XP_002572447.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
Length = 538
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 209/366 (57%), Gaps = 77/366 (21%)
Query: 17 IINWNDNLVPVE------KQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHAL 70
++ N + P++ ++++++ +NFGPQHPAAHGVL L E+
Sbjct: 54 VVKANTTVQPIDFFNVSHQEVQSVHLNFGPQHPAAHGVLRLIMEL--------------- 98
Query: 71 DVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFS 130
+ EK+ + LD IGLL + +
Sbjct: 99 -------------DGEKI---------------------IRLDPHIGLLHRGTEKLIEYK 124
Query: 131 ARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYE 190
++ D+L +N +WI RTKDVGIVSAEDAL+ GFSGVMLRGSGIKWDLRK QPYD YE
Sbjct: 125 T-YTQISDLLFDNPIWITRTKDVGIVSAEDALDLGFSGVMLRGSGIKWDLRKTQPYDAYE 183
Query: 191 NFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK 245
+ +FD+P+G HG+ ++ M+EMRQSLRI+EQ +NKMP GE++ DD KI P R+EMK
Sbjct: 184 DMDFDVPVGVHGDCYDRFIVRMEEMRQSLRIMEQCLNKMPKGEIKVDDAKICPPKRAEMK 243
Query: 246 ---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHL 290
GY VPPG+TYTAVEAPKGEFGVYLVSDGT+KPYRCKIKAPGFAH+
Sbjct: 244 SSMEALIHHFKLFSEGYLVPPGSTYTAVEAPKGEFGVYLVSDGTNKPYRCKIKAPGFAHM 303
Query: 291 AALEKIGKGSFLADIVA-IIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQ 349
AA++K+ +G L D+VA I+ IG L L + + RL+ N
Sbjct: 304 AAIDKLCRGFMLPDVVAVIVSESIGQLESMIHSLKSSLELDEINKLYHRLNQDIQNINSN 363
Query: 350 CYSLAV 355
C L+
Sbjct: 364 CDRLST 369
>gi|254440303|ref|ZP_05053797.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter antarcticus
307]
gi|198255749|gb|EDY80063.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter antarcticus
307]
Length = 415
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 197/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI RIL+H++ V T A+DVGA+TP W FEERE++M F ERASGAR+HAAY RP
Sbjct: 118 IRVLFCEIGRILSHLLNVTTQAMDVGALTPPVWGFEEREQLMVFSERASGARLHAAYFRP 177
Query: 108 GGVALDIPIGLLDDIYHFISTFSAR-LDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGF 166
GGV D+P GL+ DI + F + + +V+++LTENR++ QR D+G+V+ +D L++GF
Sbjct: 178 GGVHQDLPAGLITDIEAWADQFMTKFMVDVDELLTENRIFKQRNVDIGVVNEQDILDWGF 237
Query: 167 SGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAI 221
SGVM RGSG+ WDLR+ QPY+ Y+ FEF IP+G +G+ + M+EMRQS+ I+ QAI
Sbjct: 238 SGVMARGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLCRMEEMRQSVSIIRQAI 297
Query: 222 NKM--PGGEVRT-DDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ P G+ K++ P+R EMK G+ VP G TY VEAPKG
Sbjct: 298 VKLREPDGQGPIMASGKLTPPTRGEMKTSMEALIHHFKLYTEGFHVPAGETYACVEAPKG 357
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LV+DG++KPYR KI+APGF HL A++ + LAD+ AII
Sbjct: 358 EFGVFLVADGSNKPYRAKIRAPGFLHLQAMDFMATKHQLADVAAII 403
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYVS M E + LA+E+L
Sbjct: 51 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVSPMNQEHAWCLAIEQLTGTV 110
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+F
Sbjct: 111 VPRRASLIRVLFC 123
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+QIRN INFGPQHPAAHGVL L E+
Sbjct: 22 EQQIRNFNINFGPQHPAAHGVLRLVLEL 49
>gi|256821518|ref|YP_003145481.1| NADH dehydrogenase subunit D [Kangiella koreensis DSM 16069]
gi|256795057|gb|ACV25713.1| NADH dehydrogenase I, D subunit [Kangiella koreensis DSM 16069]
Length = 417
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH+M +G HALD+GAMT F + F ERE +M+ YE SGARMHA Y
Sbjct: 94 AQYIRVLFSEITRILNHLMWIGAHALDIGAMTVFLYAFREREILMDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I+ F TF R+DE E +
Sbjct: 154 FRPGGVYRDLPDEMPQYKVSPFSNEKKVDELNANRQGSLLDFIWDFTETFPDRVDEYEAL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LTENR+W QRT +G+V+ E AL GFSG MLRGSGI WDLRK QPY+ Y+ FDIPIG
Sbjct: 214 LTENRIWKQRTVGIGVVTPERALQLGFSGPMLRGSGIAWDLRKKQPYEVYDKMGFDIPIG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS +I+ Q + + G V ++ K++ P R MK
Sbjct: 274 KTGDCYDRYLVRVEEMRQSNKIIRQCVEWLRENPGPVMLENHKVTPPDRETMKDDMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G Y A+E PKGEFG+YLVSDG +KPYR KI+A GFAHL+A+ ++
Sbjct: 334 HHFKLFTEGYCVPEGEAYAAIEHPKGEFGIYLVSDGANKPYRVKIRAAGFAHLSAMNEMA 393
Query: 298 KGSFLADIVAII 309
G LAD+VAII
Sbjct: 394 AGHMLADVVAII 405
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPH+GLLHR TEKL E K Y Q++ Y DRLDYVSMMCNE Y L++EKL+ I+
Sbjct: 30 GETVVRADPHVGLLHRATEKLAESKPYNQSIGYMDRLDYVSMMCNEHAYVLSIEKLMGIK 89
Query: 363 VPLRAKYIRVMFT 375
P RA+YIRV+F+
Sbjct: 90 PPERAQYIRVLFS 102
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN INFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTINFGPQHPAAHGVLRLILEM 28
>gi|254450921|ref|ZP_05064358.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter arcticus
238]
gi|198265327|gb|EDY89597.1| NADH dehydrogenase (quinone), D subunit [Octadecabacter arcticus
238]
Length = 414
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 143/286 (50%), Positives = 196/286 (68%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI R+LNH+M V T A+DVGA+TP W FEERE++M F ERA GAR+HAAY RP
Sbjct: 117 IRVLFCEIGRVLNHLMNVTTQAMDVGALTPPVWGFEEREQLMVFSERACGARLHAAYFRP 176
Query: 108 GGVALDIPIGLLDDIYHFISTFSAR-LDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGF 166
GGV D+P GL++DI + F + + +V+ +LTENR++ QR D+GI++ +D L++GF
Sbjct: 177 GGVHQDLPAGLIEDIEAWADQFMTKFMVDVDGLLTENRIFKQRNVDIGIINEQDILDWGF 236
Query: 167 SGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAI 221
SGVM RGSG+ WDLR+ QPY+ Y+ FEF IP+G +G+ + M+EMRQS+ I+ QAI
Sbjct: 237 SGVMARGSGLAWDLRRAQPYECYDEFEFQIPVGKNGDCYDRYLCRMEEMRQSVSIIRQAI 296
Query: 222 NKMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ + + M K++ P+R EMK G+ VP G TY VEAPKG
Sbjct: 297 VKLREPDGQGPIMARGKLTPPTRGEMKTSMEALIHHFKLYTEGFHVPVGETYACVEAPKG 356
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LV+DG++KPYR KI+APGF HL A++ + LAD+ AII
Sbjct: 357 EFGVFLVADGSNKPYRAKIRAPGFLHLQAMDFMATKHQLADVAAII 402
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 52/73 (71%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYVS M E + LA+EKL
Sbjct: 50 GEVVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVSPMNQEHAWCLAIEKLTGTV 109
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+F
Sbjct: 110 VPRRASLIRVLFC 122
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 21 EQKIRNFNINFGPQHPAAHGVLRLVLEL 48
>gi|126727145|ref|ZP_01742982.1| NADH dehydrogenase delta subunit [Rhodobacterales bacterium
HTCC2150]
gi|126703573|gb|EBA02669.1| NADH dehydrogenase delta subunit [Rhodobacterales bacterium
HTCC2150]
Length = 404
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 203/286 (70%), Gaps = 27/286 (9%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNHI+ V T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 110 IRVLYSEIGRVLNHILNVTTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F A L +++ +LT+NR++ QR D+G++S ++AL++GFS
Sbjct: 170 GGVHQDLPDDLIDDIDTWADEFPAVLADIDGLLTDNRIFKQRNVDIGVISQQEALDWGFS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+FDIP+GT G+ + M+EMR+SL+I++QA+
Sbjct: 230 GVMVRGSGMAWDLRRSQPYECYDEFDFDIPVGTSGDCYDRYLCRMQEMRESLKIIKQAVA 289
Query: 223 KMPGGEVRTDDM----KISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
K+ V D+ KI+ PSR +MK G+ VP G Y VEAPKG
Sbjct: 290 KL---RVEKGDVLARGKITPPSRGDMKTSMESLIHHFKLYTEGFHVPAGEIYACVEAPKG 346
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGV+LVSDG++KPY+ KI+APGF HL A++ + G LAD+ AII
Sbjct: 347 EFGVFLVSDGSNKPYKAKIRAPGFLHLQAMDHVATGHQLADVAAII 392
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 43 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 102
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+++
Sbjct: 103 VPRRASLIRVLYS 115
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 14 EQKIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|120609953|ref|YP_969631.1| NADH dehydrogenase subunit D [Acidovorax citrulli AAC00-1]
gi|218534375|sp|A1TLL9.1|NUOD_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|120588417|gb|ABM31857.1| NADH dehydrogenase subunit D [Acidovorax citrulli AAC00-1]
Length = 417
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+EITR+LNH+M +G+H D G+ T + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFSEITRLLNHLMWLGSHGNDCGSSTILIYTFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 FRPGGVYRDLPDSMPQYQASKVRNAKAIEVLNQNRQGSLLDFIDDFTQRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT D+GIV+ E ALN G +G MLRGSGI WDLRK QPYD Y+ EFDIP+G
Sbjct: 214 LTDNRIWKQRTVDIGIVTPERALNLGMTGPMLRGSGIAWDLRKKQPYDAYDRVEFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS RI++Q ++ K G V TD+ K++ PSR MK
Sbjct: 274 KTGDCYDRYLVRVQEMRQSNRIIKQCVDWLKANPGPVITDNHKVAPPSRESMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA L+++
Sbjct: 334 HHFKLFTEGFRVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLATLDEMA 393
Query: 298 KGSFLADIVAII 309
+G +AD VAII
Sbjct: 394 RGHMIADAVAII 405
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHR TEKL E+KT+ Q+LPY DRLDYVSMMCNE Y LA+EKLL I+
Sbjct: 30 GEVVQRADPHIGLLHRATEKLAEHKTFIQSLPYMDRLDYVSMMCNEHAYCLAIEKLLGID 89
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRVMF+
Sbjct: 90 VPLRAQYIRVMFS 102
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLEL 28
>gi|326316102|ref|YP_004233774.1| NADH dehydrogenase I subunit D [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372938|gb|ADX45207.1| NADH dehydrogenase I, D subunit [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 417
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+EITR+LNH+M +G+H D G+ T + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFSEITRLLNHLMWLGSHGNDCGSSTILIYTFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 FRPGGVYRDLPDSMPQYQASKVRNAKAIEVMNQNRRGSLLDFIDDFTQRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT D+GIV+ E ALN G +G MLRGSGI WDLRK QPYD Y+ EFDIP+G
Sbjct: 214 LTDNRIWKQRTVDIGIVTPERALNLGMTGPMLRGSGIAWDLRKKQPYDAYDRVEFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS RI++Q ++ K G V TD+ K++ PSR MK
Sbjct: 274 KTGDCYDRYLVRVQEMRQSNRIIKQCVDWLKANPGPVITDNHKVAPPSRESMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA L+++
Sbjct: 334 HHFKLFTEGFRVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLATLDEMA 393
Query: 298 KGSFLADIVAII 309
+G +AD VAII
Sbjct: 394 RGHMIADAVAII 405
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHR TEKL E+KT+ Q+LPY DRLDYVSMMCNE Y LA+EKLL I+
Sbjct: 30 GEVVQRADPHIGLLHRATEKLAEHKTFIQSLPYMDRLDYVSMMCNEHAYCLAIEKLLGID 89
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRVMF+
Sbjct: 90 VPLRAQYIRVMFS 102
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLEL 28
>gi|91776410|ref|YP_546166.1| NADH dehydrogenase subunit D [Methylobacillus flagellatus KT]
gi|123380392|sp|Q1GZL2.1|NUOD_METFK RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91710397|gb|ABE50325.1| NADH dehydrogenase subunit D [Methylobacillus flagellatus KT]
Length = 417
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 151/313 (48%), Positives = 198/313 (63%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +G HALDVGAMT F + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLWLGAHALDVGAMTVFLYAFREREDLFDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F A +DE E +
Sbjct: 154 YRPGGVYRDLPDRMPQYEESTVRSKEDVKQLNENRQGSLLDFIEDFTNRFPAYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ G +G MLRGSG+ WDLRK QPY+ Y+ +FDIPIG
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERAMALGMTGPMLRGSGVAWDLRKKQPYEVYDRLDFDIPIG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++E RQS RI++Q I+ K P G V +D+ K++ P R EMK
Sbjct: 274 VNGDCYDRYLVRIEEFRQSNRIIKQCIDWLRKNP-GPVISDNTKVAPPPREEMKHDMEAL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YL+SDG +KPYR KI+APGFAHLAAL+++
Sbjct: 333 IHHFKLFTEGFHVPAGEAYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGFAHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD+VAII
Sbjct: 393 TRGHMIADLVAII 405
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E +TY Q++PY DRLDYVSMM NE Y +A+EKLL +E
Sbjct: 30 GEVIQRADPHIGLLHRGTEKLAENRTYLQSVPYMDRLDYVSMMVNEHAYVMAIEKLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|307730337|ref|YP_003907561.1| NADH dehydrogenase I subunit D [Burkholderia sp. CCGE1003]
gi|307584872|gb|ADN58270.1| NADH dehydrogenase I, D subunit [Burkholderia sp. CCGE1003]
Length = 417
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 151/313 (48%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNAKALSKMNENRQGSLLDFIDDFFTRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G SG MLRGSGI+WDLRK QPY+ YE +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQLGMSGAMLRGSGIEWDLRKKQPYEVYEKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RIV+Q + K P G V D+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSTRIVKQCVEWLRKNP-GPVMIDNHKVAPPSRVGMKSNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APG+AHL+AL+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTFIQSVPYMDRLDYVSMMVNEHGYVMAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPVRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|300113268|ref|YP_003759843.1| NADH dehydrogenase I subunit D [Nitrosococcus watsonii C-113]
gi|299539205|gb|ADJ27522.1| NADH dehydrogenase I, D subunit [Nitrosococcus watsonii C-113]
Length = 417
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 196/313 (62%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M +G H LD+GAMT F + F ERE +M+ YE SGARMHA Y
Sbjct: 94 AQYIRTMFDEITRILNHLMWLGAHGLDIGAMTVFLYCFREREDLMDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPETMPGYQLSKWHNEKEIAALNRNREGSLLDFIEDFTTRFPTCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E AL GF+G MLRGSG++WDLRK QPY Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVTPERALQLGFTGPMLRGSGVEWDLRKKQPYAVYDQVDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS +I+ Q ++ K P G V ++ K++ P R EMK
Sbjct: 274 VNGDCYDRYLVRIEEMRQSNQIIRQCVDWLRKNP-GPVIVNNYKVAAPPREEMKNDMEVL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
GY VP G Y AVEAPKGEFGVYL+SDG +KPYR KI+APGFAHLAA++++
Sbjct: 333 IHHFKLFTEGYCVPEGEAYAAVEAPKGEFGVYLISDGANKPYRLKIRAPGFAHLAAMDEM 392
Query: 297 GKGSFLADIVAII 309
+G LAD+VAII
Sbjct: 393 VQGHMLADVVAII 405
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ DPH+GLLHR TEKL E K + Q++ Y DRLDYVSMMC+E Y A+EKLL IE
Sbjct: 30 GEIIQRADPHVGLLHRATEKLAESKPFNQSIGYMDRLDYVSMMCSEHGYVKAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
PLRA+YIR MF
Sbjct: 90 PPLRAQYIRTMF 101
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIQNFTLNFGPQHPAAHGVLRLVLEM 28
>gi|218681071|ref|ZP_03528968.1| NADH dehydrogenase subunit D [Rhizobium etli CIAT 894]
Length = 276
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 141/264 (53%), Positives = 183/264 (69%), Gaps = 24/264 (9%)
Query: 70 LDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTF 129
+DVGA+TP W FEEREK+M FYERASG+RMHAAYVRPGGV D+P L+ DI + F
Sbjct: 1 MDVGALTPPLWGFEEREKLMVFYERASGSRMHAAYVRPGGVHQDLPEQLVQDIGDWCDPF 60
Query: 130 SARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGY 189
LD+++++LT NR++ QR D+G+VS ED +GFSGVM+RGSG WDLR+ QPY+ Y
Sbjct: 61 LKALDDIDNLLTGNRIFKQRNVDIGVVSLEDCWAWGFSGVMVRGSGAAWDLRRAQPYECY 120
Query: 190 ENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM----PGGEVRTDDMKISTPS 240
+ EFDIPIG +G+ +I M EMRQS+RI++Q +N++ G + D K+ P
Sbjct: 121 SDLEFDIPIGKNGDNYDRYLIRMIEMRQSVRIMKQCVNRLLSDAKTGPYSSIDGKVVPPK 180
Query: 241 RSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAP 285
R EMK GY VP G Y AVEAPKGEFGVYLVSDGT+KPYRCKI+AP
Sbjct: 181 RGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLVSDGTNKPYRCKIRAP 240
Query: 286 GFAHLAALEKIGKGSFLADIVAII 309
G+AHL A++ + +G LAD+ A++
Sbjct: 241 GYAHLQAMDFMCRGHQLADVAAVL 264
>gi|254491826|ref|ZP_05105005.1| NADH dehydrogenase (quinone), D subunit [Methylophaga thiooxidans
DMS010]
gi|224463304|gb|EEF79574.1| NADH dehydrogenase (quinone), D subunit [Methylophaga thiooxydans
DMS010]
Length = 417
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 195/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G H LD+GAMT F + F ERE +M+ YE SGARMHA Y
Sbjct: 94 AQYIRVMFDEITRVLNHLMWLGAHGLDIGAMTVFLYCFREREDLMDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPARMPQYQTSKWHNEKEVKKKNSNREGSLLDFIEDFTTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+G MLRGSGI+WDLR+ QPY+ Y+ +FDIPIG
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERAMQLGFTGPMLRGSGIEWDLRRKQPYEVYDKLDFDIPIG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS RI++Q ++ + G V D+ K++ P R+ MK
Sbjct: 274 KEGDCYDRYLVRVEEMRQSNRIIKQCVDWLRANPGPVILDNSKVAPPKRAVMKDDMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G Y+A+E PKGEFG+Y+VSDG +KPYR KI+APGF HLAA+ ++
Sbjct: 334 HHFKLFTEGYCVPEGEVYSAIEHPKGEFGIYMVSDGANKPYRVKIRAPGFPHLAAMNEMS 393
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 394 KGHMLADVVAII 405
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E K + Q++ Y DRLDYVSMMCNE Y +A+EKL+ +E
Sbjct: 30 GEVIERADPHIGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVMAIEKLIGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILEM 28
>gi|170696396|ref|ZP_02887525.1| NADH dehydrogenase I, D subunit [Burkholderia graminis C4D1M]
gi|170138724|gb|EDT06923.1| NADH dehydrogenase I, D subunit [Burkholderia graminis C4D1M]
Length = 417
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 195/313 (62%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F E+TR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEVTRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNAKALSRMNENRQGSLLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G SG MLRGSGI+WDLRK QPY+ YE +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGMSGAMLRGSGIEWDLRKKQPYEVYEKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RIV+Q I K P G V D+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSTRIVKQCIEWLRKNP-GPVMIDNHKVAPPSRVGMKSNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G +Y AVE PKGEFG+YL+SDG +KPYR KI+APG+AHL+AL+++
Sbjct: 333 IHHFKLFTEGFHVPEGESYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGYAHLSALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTFIQSVPYMDRLDYVSMMVNEHGYVMAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPVRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|270158111|ref|ZP_06186768.1| NADH dehydrogenase (quinone) D subunit [Legionella longbeachae
D-4968]
gi|289163624|ref|YP_003453762.1| NADH dehydrogenase I chain D [Legionella longbeachae NSW150]
gi|269990136|gb|EEZ96390.1| NADH dehydrogenase (quinone) D subunit [Legionella longbeachae
D-4968]
gi|288856797|emb|CBJ10608.1| NADH dehydrogenase I chain D [Legionella longbeachae NSW150]
Length = 417
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 194/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F E+TRILNH++ +G ALD+GAMT F + F ERE + + YE SGARMHA Y
Sbjct: 94 AQYIRTMFDEVTRILNHLLWLGAIALDIGAMTVFLYCFREREDLFDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGVA D+P LLD ++ F F +DE E +
Sbjct: 154 YRPGGVARDLPDAMPKYQTSKWHNDREVEKLNEDRNGSLLDFLWAFTERFPRCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT D+GIVS EDAL +GF+G MLRGSGI WDLRK Q Y Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVDIGIVSPEDALQWGFTGPMLRGSGIAWDLRKKQSYAAYDRVDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++E+RQS RI+ Q I K G VR DD K++ P R EMK
Sbjct: 274 KTGDCYDRYLVRVEELRQSNRIIRQCIEWLKANPGPVRVDDHKVTPPRRVEMKADMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ +P G Y+AVEAPKGEFG+Y+VSDG +KPYR KI+APGFAHL++ +++
Sbjct: 334 HHFKLFTEGFCLPAGEVYSAVEAPKGEFGIYMVSDGANKPYRMKIRAPGFAHLSSFDEMS 393
Query: 298 KGSFLADIVAII 309
+G +AD VAI+
Sbjct: 394 RGHMIADGVAIL 405
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 51/65 (78%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHR TEKL E K Y Q + Y DRLDYVSMMCNE Y A+EKLL IE+PLRA+Y
Sbjct: 37 DPHIGLLHRATEKLAETKPYIQTIGYMDRLDYVSMMCNEHAYVRAIEKLLGIEIPLRAQY 96
Query: 370 IRVMF 374
IR MF
Sbjct: 97 IRTMF 101
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+++N +NFGPQHPAAHGVL L E+
Sbjct: 3 ELKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|387128699|ref|YP_006297304.1| NADH-ubiquinone oxidoreductase subunit D [Methylophaga sp. JAM1]
gi|386275761|gb|AFI85659.1| NADH-ubiquinone oxidoreductase chain D [Methylophaga sp. JAM1]
Length = 417
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 196/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF E+TR+LNH+M +G H LD+GAMT F + F ERE +M+ YE SGAR+HA Y
Sbjct: 94 AQYIRVLFDEMTRVLNHLMWLGAHGLDIGAMTVFLYCFREREDLMDCYEAVSGARLHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPNSMPQYQKSKWHSEAEVKKLNQNREGSLLDFIEDFCQRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E AL GF+G MLRGSG++WDLR+ QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERALQLGFTGPMLRGSGVEWDLRRKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS +I++Q ++ + G V D+ KI+ PSR++MK
Sbjct: 274 KEGDCYDRYLVRVEEMRQSNKIMQQCVDWLRANPGPVILDNTKIAPPSRADMKDDMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G Y+AVE PKGEFG+Y+VSDG +KPYR KI+APGF HLA++ ++
Sbjct: 334 HHFKLFTEGYCVPEGEVYSAVEHPKGEFGIYMVSDGANKPYRVKIRAPGFPHLASMNEMA 393
Query: 298 KGSFLADIVAII 309
KG LAD+VAII
Sbjct: 394 KGHLLADVVAII 405
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E K Y Q++ Y DRLDYVSMMCNE Y +A+EKLL IE
Sbjct: 30 GEVIVHADPHIGLLHRGTEKLAESKPYNQSIGYMDRLDYVSMMCNEHAYVMAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
P+RA+YIRV+F
Sbjct: 90 PPVRAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILEM 28
>gi|77166020|ref|YP_344545.1| NADH dehydrogenase subunit D [Nitrosococcus oceani ATCC 19707]
gi|254436326|ref|ZP_05049832.1| NADH dehydrogenase (quinone), D subunit [Nitrosococcus oceani
AFC27]
gi|123593540|sp|Q3J831.1|NUOD_NITOC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|76884334|gb|ABA59015.1| NADH dehydrogenase subunit D [Nitrosococcus oceani ATCC 19707]
gi|207088016|gb|EDZ65289.1| NADH dehydrogenase (quinone), D subunit [Nitrosococcus oceani
AFC27]
Length = 417
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 148/313 (47%), Positives = 197/313 (62%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M +G H LD+GAMT F + F ERE +M+ YE SGARMHA Y
Sbjct: 94 AQYIRTMFDEITRILNHLMWLGAHGLDIGAMTVFLYCFREREDLMDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPETMPGYQPSKWHNEKEVAIINRNREGSLLDFIEDFTARFPTCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E AL GF+G MLRGSG++WDLRK QPY Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVTPERALQLGFTGPMLRGSGVEWDLRKKQPYAAYDQIDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS +I++Q ++ K P G V ++ K++ P R +MK
Sbjct: 274 VNGDCYDRYLVRIEEMRQSNQIIKQCVDWLRKNP-GPVIVNNYKVAAPPREKMKNDMEVL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
GY VP G Y AVEAPKGEFGVYL+SDG +KPYR K++APGFAHLAA++++
Sbjct: 333 IHHFKLFTEGYCVPEGEAYAAVEAPKGEFGVYLISDGANKPYRLKVRAPGFAHLAAMDEM 392
Query: 297 GKGSFLADIVAII 309
+G LAD+VAII
Sbjct: 393 VQGHMLADVVAII 405
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 53/72 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ DPH+GLLHR TEKL E K + Q++ Y DRLDYVSMMCNE Y A+E LL IE
Sbjct: 30 GEIIQRADPHVGLLHRATEKLAESKPFNQSIGYMDRLDYVSMMCNEHGYVKAIETLLGIE 89
Query: 363 VPLRAKYIRVMF 374
PLRA+YIR MF
Sbjct: 90 PPLRAQYIRTMF 101
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNFTLNFGPQHPAAHGVLRLVLEM 28
>gi|241663481|ref|YP_002981841.1| NADH dehydrogenase subunit D [Ralstonia pickettii 12D]
gi|309781855|ref|ZP_07676588.1| NADH dehydrogenase (quinone), D subunit [Ralstonia sp. 5_7_47FAA]
gi|404396484|ref|ZP_10988278.1| NADH-quinone oxidoreductase subunit D [Ralstonia sp. 5_2_56FAA]
gi|240865508|gb|ACS63169.1| NADH dehydrogenase I, D subunit [Ralstonia pickettii 12D]
gi|308919496|gb|EFP65160.1| NADH dehydrogenase (quinone), D subunit [Ralstonia sp. 5_7_47FAA]
gi|348613574|gb|EGY63153.1| NADH-quinone oxidoreductase subunit D [Ralstonia sp. 5_2_56FAA]
Length = 417
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/313 (48%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRI+NH+M +G+HALDVGAM F + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRIMNHLMWIGSHALDVGAMAVFLYAFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYKASKVRNEKALAALNETRSGSLLDFIEDFTNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E ALN GFSG MLRGSGI+WD+RK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALNKGFSGAMLRGSGIEWDVRKKQPYEVYDRIDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RI+ Q I K P G V TD+ K++ PSR +MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSNRIIRQCIEWLRKNP-GPVITDNHKVAPPSRVDMKTNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G VP G Y AVE PKGEFG+Y +SDG +KPYR KI+APGF HLAAL+++
Sbjct: 333 IHHFKLFTEGMHVPEGEAYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFVHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
KG +AD V II
Sbjct: 393 AKGHMIADAVTII 405
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQSVPYMDRLDYVSMMVNEHAYVMAIERLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|421746421|ref|ZP_16184216.1| NADH dehydrogenase subunit D [Cupriavidus necator HPC(L)]
gi|409775034|gb|EKN56576.1| NADH dehydrogenase subunit D [Cupriavidus necator HPC(L)]
Length = 417
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 195/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G+HALDVGAM F + F ERE M + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGSHALDVGAMAVFLYAFREREDMFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYKASKVHNERAIKAMNEARSGSLLDFIEDFTNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL GF+G MLRGSGI+WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGFTGPMLRGSGIEWDLRKKQPYEVYDKLDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS RI++Q ++ + G V +D+ K++ PSR +MK
Sbjct: 274 VGGDCYSRYLVRVEEMRQSNRIIKQCVDWLRRNPGPVMSDNHKVTPPSRVDMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TY AVE PKGEFG+Y +SDG +KPYR KI+APGFAHLAAL+++
Sbjct: 334 HHFKLFTEGIRVPEGETYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFAHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+EKL+ I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQSVPYMDRLDYVSMMANEHAYVMAIEKLVGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|187929290|ref|YP_001899777.1| NADH dehydrogenase subunit D [Ralstonia pickettii 12J]
gi|229891298|sp|B2U7Q8.1|NUOD_RALPJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|187726180|gb|ACD27345.1| NADH dehydrogenase I, D subunit [Ralstonia pickettii 12J]
Length = 417
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 151/313 (48%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRI+NH+M +G+HALDVGAM F + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRIMNHLMWIGSHALDVGAMAVFLYAFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYKASKVRNEKALAALNQTRSGSLLDFIEDFTNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E ALN GFSG MLRGSGI+WD+RK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALNKGFSGAMLRGSGIEWDVRKKQPYEVYDRIDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RI+ Q I K P G V TD+ K++ PSR +MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSNRIIRQCIEWLRKNP-GPVITDNHKVAPPSRVDMKTNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G VP G Y AVE PKGEFG+Y +SDG +KPYR KI+APGF HLAAL+++
Sbjct: 333 IHHFKLFTEGMHVPEGEAYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFVHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
KG +AD V II
Sbjct: 393 AKGHMIADAVTII 405
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQSVPYMDRLDYVSMMVNEHAYVMAIERLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|377555676|ref|ZP_09785404.1| NADH dehydrogenase subunit D [endosymbiont of Bathymodiolus sp.]
Length = 417
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 144/312 (46%), Positives = 195/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +GTH LDVGAM+ F + F EREK+++ YE SG+RMHA Y
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGTHGLDVGAMSIFLYAFREREKLIDCYEAVSGSRMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F+ F + + +D+
Sbjct: 154 YRPGGVYRDLPEKMPQYLKNDFRKPEELEAMNKNRQGSLLDFIDDFVKEFPKSIKQYDDL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR ++GIVSA A GF+G MLRGSG+ WDLRK QPY Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVNIGIVSANRAKQLGFTGPMLRGSGVAWDLRKNQPYAVYDQLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ M+EMRQS I++Q ++ + G V +DD K++ P R+EMK
Sbjct: 274 VTGDSYDRYLVRMEEMRQSNHIIKQCVDWLRENPGSVMSDDKKVAPPKRTEMKDDMESLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY +P G Y A+E PKGEFG+YL+SDG +KPYR KI+APGFAHLAA++++
Sbjct: 334 HHFKLFTEGYCLPEGEVYCAIEHPKGEFGIYLISDGANKPYRVKIRAPGFAHLAAMDEMA 393
Query: 298 KGSFLADIVAII 309
KG L+D+V II
Sbjct: 394 KGHMLSDVVTII 405
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E K Y Q++ Y DRLDYVSMMCNE Y +A+E +L ++
Sbjct: 30 GEVIERADPHIGLLHRGTEKLAESKPYNQSIGYMDRLDYVSMMCNEHAYVMAIETMLGLK 89
Query: 363 VPLRAKYIRVMF 374
+P RA+YIRVMF
Sbjct: 90 IPERAQYIRVMF 101
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L EI
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILEI 28
>gi|269469171|gb|EEZ80713.1| NADH dehydrogenase I chain D [uncultured SUP05 cluster bacterium]
Length = 417
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 144/309 (46%), Positives = 194/309 (62%), Gaps = 47/309 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ ++F EITRILNH+M +GTH LDVGAM+ F + F EREK+++ YE SG+RMHA Y RP
Sbjct: 97 IRVMFDEITRILNHLMWLGTHGLDVGAMSIFLYAFREREKLIDCYEAVSGSRMHATYYRP 156
Query: 108 GGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P LLD I F+ F + + +D+LT+
Sbjct: 157 GGVYRDLPDKMPQYLESDFRTEKELKVMNANRQGSLLDFIADFVKEFPKSIKQYDDLLTD 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QR ++GIVSA A GF+G MLRGSG+ WDLRK QPY Y+ EFDIP+G G
Sbjct: 217 NRIWKQRLVNIGIVSANRAKQLGFTGPMLRGSGVAWDLRKNQPYAVYDKMEFDIPVGVTG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK---------- 245
+ ++ M+EMRQS I++Q + + G V +DD K++ P+R EMK
Sbjct: 277 DSYDRYLVRMEEMRQSNHIIDQCVEWLQNNPGPVMSDDHKVAPPNRVEMKDDMESLIHHF 336
Query: 246 -----GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGS 300
GY +P G Y+A+E PKGEFGVYL+SDG +KPYR KI+APGFAHLAA++++ +G
Sbjct: 337 KLFTEGYCLPEGEVYSAIEHPKGEFGVYLISDGANKPYRVKIRAPGFAHLAAMDEMARGH 396
Query: 301 FLADIVAII 309
L+D+V II
Sbjct: 397 MLSDVVTII 405
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E K Y Q++ Y DRLDYVSMMCNE Y +A+E +L +E
Sbjct: 30 GEVIERADPHIGLLHRGTEKLAESKPYNQSIGYMDRLDYVSMMCNEHAYVMAIETMLELE 89
Query: 363 VPLRAKYIRVMF 374
VP RAKYIRVMF
Sbjct: 90 VPERAKYIRVMF 101
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L EI
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILEI 28
>gi|94309875|ref|YP_583085.1| NADH dehydrogenase subunit D [Cupriavidus metallidurans CH34]
gi|229891297|sp|Q1LPW0.1|NUOD_RALME RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|93353727|gb|ABF07816.1| NADH-ubiquinone oxidoreductase D subunit (NADH dehydrogenase
subunit D) [Cupriavidus metallidurans CH34]
Length = 417
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 195/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G+HALDVGAM F + F ERE M + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGSHALDVGAMAVFLYAFREREDMFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYRASKVHNEKAIKVMNEARSGSLLDFIEDFTNRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR D+G+V+ E AL GF+G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVDIGVVTPERALQMGFTGPMLRGSGIEWDLRKKQPYEVYDKMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
T G+ ++ ++EMRQS RI++Q I+ + G V T++ K++ PSR +MK
Sbjct: 274 TAGDCYSRYLVRVEEMRQSNRIIKQCIDWLRRNPGPVITENHKVAPPSRVDMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y AVE PKGEFG+Y +SDG +KPYR KI+APGF HLAAL+++
Sbjct: 334 HHFKLFTEGIHVPAGEAYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFVHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
+G +AD V II
Sbjct: 394 RGHMIADAVTII 405
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQSVPYMDRLDYVSMMVNEHAYVMAIERLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|371908016|emb|CAP18826.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Vaucheria
terrestris]
Length = 297
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 183/261 (70%), Gaps = 34/261 (13%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWL 81
+NL+ ++ IR + I +LF EITRILNH++AVG HA+DVGA+TPF W
Sbjct: 51 ENLLQIKVPIRAIYIR------------VLFCEITRILNHLLAVGCHAIDVGAITPFLWG 98
Query: 82 FEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLT 141
FEEREK++EFYER SGAR+HAAY RPGGV++D+P GLLDDIY FI FS RLDE+E++LT
Sbjct: 99 FEEREKLIEFYERVSGARIHAAYFRPGGVSIDLPQGLLDDIYVFILQFSTRLDEIEEILT 158
Query: 142 ENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTH 201
NR+W QR ++GIVSA++AL +G+SGV+LRGSG+ WDLR QPY+ Y + EFDIP+GT
Sbjct: 159 TNRIWKQRLVEIGIVSAKNALAFGYSGVILRGSGVNWDLRISQPYEIYSDLEFDIPVGTK 218
Query: 202 GN-----VIGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK----------- 245
G+ ++ ++E+RQSL I++Q +N MP G V+ D IS PSR+E+K
Sbjct: 219 GDCYDRYLLRLEEIRQSLSIIQQCLNSMPLGPVK--DATISPPSRAELKSNIEALINHFK 276
Query: 246 ----GYPVPPGATYTAVEAPK 262
G+ VP G Y A EAPK
Sbjct: 277 YFTEGFTVPSGEIYIATEAPK 297
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 56/66 (84%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS++ E Y LAVE LL I+VP+RA Y
Sbjct: 5 DPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSIISQEHTYILAVENLLQIKVPIRAIY 64
Query: 370 IRVMFT 375
IRV+F
Sbjct: 65 IRVLFC 70
>gi|254251864|ref|ZP_04945182.1| NADH dehydrogenase I,D subunit [Burkholderia dolosa AUO158]
gi|124894473|gb|EAY68353.1| NADH dehydrogenase I,D subunit [Burkholderia dolosa AUO158]
Length = 417
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 193/310 (62%), Gaps = 49/310 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY RP
Sbjct: 97 IRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRP 156
Query: 108 GGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P + LD I F + F +DE E +LT+
Sbjct: 157 GGVYRDLPDAMPQYKASKIRNEKALAKMNEARSGSVLDFIDDFFTRFPKCVDEYETLLTD 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ EFD+P+G +G
Sbjct: 217 NRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRMEFDVPVGVNG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK--------- 245
+ ++ ++EMRQS+RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 277 DCYDRYLVRVEEMRQSVRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDLIHH 335
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++ +G
Sbjct: 336 FKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMARG 395
Query: 300 SFLADIVAII 309
+AD V II
Sbjct: 396 HMIADAVTII 405
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP RAKYIRV+F
Sbjct: 90 VPERAKYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|167585974|ref|ZP_02378362.1| NADH dehydrogenase subunit D [Burkholderia ubonensis Bu]
Length = 417
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/313 (48%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALAKMNEARQGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS+RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSVRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|390952117|ref|YP_006415876.1| NADH dehydrogenase subunit D [Thiocystis violascens DSM 198]
gi|390428686|gb|AFL75751.1| NADH dehydrogenase subunit D [Thiocystis violascens DSM 198]
Length = 418
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/313 (47%), Positives = 191/313 (61%), Gaps = 48/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH+M +G H LD+GAM+ F + F ERE +++ YE SGAR+HA Y
Sbjct: 94 AQYIRTLFDEITRILNHLMWLGAHGLDIGAMSIFLYCFREREDLLDCYEAVSGARLHATY 153
Query: 105 VRPGGVALDIPI--------------------------GLLDDIYHFISTFSARLDEVED 138
RPGGV D+P LLD I F F A +DE E
Sbjct: 154 YRPGGVYRDLPDRMPQYQGSSKWHSAKTIAKRNDARQGSLLDFIDDFADRFPAHVDEYET 213
Query: 139 MLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPI 198
+LT+NR+W QRT +G+VS E AL GF+G MLRGSG++WDLRK QPY Y +FDIP+
Sbjct: 214 LLTDNRIWKQRTVGIGVVSPERALQLGFTGPMLRGSGVEWDLRKKQPYAAYGEVDFDIPV 273
Query: 199 GTHGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------ 245
G +G+ ++ M+EMRQS RI++Q + + G V DD K+ P R+ +K
Sbjct: 274 GVNGDCYDRYLVRMEEMRQSNRIIKQCVQWLRDNPGPVAIDDHKVMPPRRAAVKDDMESL 333
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
GY PPG Y AVEAPKGEFG Y+VSDG +KPYR K++APGF HLAAL+++
Sbjct: 334 IHHFKLFTEGYCTPPGEVYAAVEAPKGEFGCYIVSDGANKPYRLKVRAPGFPHLAALDEM 393
Query: 297 GKGSFLADIVAII 309
+G LAD+VAII
Sbjct: 394 SRGHMLADVVAII 406
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 55/72 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E K Y Q++ Y DRLDYVSMMCNE Y A+EKLL +E
Sbjct: 30 GEVIERADPHIGLLHRGTEKLAESKPYNQSIGYMDRLDYVSMMCNEHGYVRAIEKLLGVE 89
Query: 363 VPLRAKYIRVMF 374
P+RA+YIR +F
Sbjct: 90 APVRAQYIRTLF 101
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLEM 28
>gi|406914577|gb|EKD53743.1| hypothetical protein ACD_60C00158G0006 [uncultured bacterium]
Length = 420
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/321 (46%), Positives = 200/321 (62%), Gaps = 50/321 (15%)
Query: 38 FGPQHP-AAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERAS 96
G Q P A + LF EITRILNH++ +G HALD+GAM+ F + F ERE++++ YE S
Sbjct: 89 LGVQAPIRARYIRTLFDEITRILNHLLWLGAHALDIGAMSMFLYCFREREELLDCYEAVS 148
Query: 97 GARMHAAYVRPGGVALDIP-------------------------IGLLDDIYHFISTFSA 131
G+RMHA Y RPGGV D+P LLD I+ F F
Sbjct: 149 GSRMHATYYRPGGVYRDLPGKMPQYKPSRWHNEKEVAELNKNRQGSLLDFIWDFTERFPH 208
Query: 132 RLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYEN 191
R+DE E +LT+NR+W QRT D+GI+S E A+ GF+G MLRGSG+ WDLRK QPY YE+
Sbjct: 209 RVDEYETLLTDNRIWKQRTVDIGIISPERAIALGFTGPMLRGSGVAWDLRKKQPYAAYEH 268
Query: 192 FEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSE 243
+FDIP+GT G+ ++ ++EMRQ+ RI+ Q + K P G V +D KI+ P+R +
Sbjct: 269 VDFDIPVGTRGDCYDRYLVRVEEMRQANRIIRQCVEWLRKNP-GPVMSDHHKIAPPTRVD 327
Query: 244 MK---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFA 288
MK GY +P G Y A+E PKGEFGVYLVSDG +KPYR KI+A GF
Sbjct: 328 MKKDMESLIHHFKLMTEGYCLPVGEAYAAIEHPKGEFGVYLVSDGANKPYRLKIRAAGFP 387
Query: 289 HLAALEKIGKGSFLADIVAII 309
HLAALE++ +G +AD+V+++
Sbjct: 388 HLAALEELVRGHMIADVVSVL 408
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 50/65 (76%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHR TEKL E K Y + Y DRLDYVSMMCNE Y LA+EKLL ++ P+RA+Y
Sbjct: 40 DPHVGLLHRATEKLAETKPYNHTIGYMDRLDYVSMMCNEHGYVLAIEKLLGVQAPIRARY 99
Query: 370 IRVMF 374
IR +F
Sbjct: 100 IRTLF 104
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
QI+N NFGPQHPAAHGVL L E+
Sbjct: 6 QIQNYTFNFGPQHPAAHGVLRLILEV 31
>gi|186476761|ref|YP_001858231.1| NADH dehydrogenase subunit D [Burkholderia phymatum STM815]
gi|229891279|sp|B2JDM5.1|NUOD_BURP8 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|184193220|gb|ACC71185.1| NADH dehydrogenase I, D subunit [Burkholderia phymatum STM815]
Length = 417
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 193/310 (62%), Gaps = 49/310 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF E+TR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY RP
Sbjct: 97 IRVLFDEVTRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRP 156
Query: 108 GGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P LLD I F + F +DE E +LT+
Sbjct: 157 GGVYRDLPDAMPQYKASKIRNTKALSKLNENRQGSLLDFIEDFFNRFPKCVDEYETLLTD 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QR +G+VS E AL G +G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G +G
Sbjct: 217 NRIWKQRLVGIGVVSPERALQMGLTGAMLRGSGIEWDLRKKQPYEVYDQMDFDIPVGVNG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK--------- 245
+ ++ ++EMRQS RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 277 DCYDRYLVRVEEMRQSTRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKSNMEELIHH 335
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APG+AHL+AL+++ +G
Sbjct: 336 FKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARG 395
Query: 300 SFLADIVAII 309
+AD V II
Sbjct: 396 HMIADAVTII 405
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RAKYIRV+F
Sbjct: 90 VPIRAKYIRVLF 101
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|226939459|ref|YP_002794532.1| NADH dehydrogenase subunit D [Laribacter hongkongensis HLHK9]
gi|226714385|gb|ACO73523.1| NADH dehydrogenase I, D subunit [Laribacter hongkongensis HLHK9]
Length = 417
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/313 (46%), Positives = 199/313 (63%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ VG H LD+GAMT F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLWVGAHGLDIGAMTVFLYAFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F S F +DE E +
Sbjct: 154 YRPGGVYRDLPDSMPQYEFSKIKNDRELARLNENRQGSLLDFIDDFTSRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E AL GF+G MLRGSGI+WD+RK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERALQLGFTGAMLRGSGIEWDVRKKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++E+RQS RI++Q ++ K P G V TD+ K++ P R++MK
Sbjct: 274 VNGDCYDRYLVRIEELRQSNRIIKQCVDWLRKNP-GPVITDNHKVAPPCRADMKSNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G VP G Y +E PKGEFG+YLVSDG +KPYR KI+APG+AHL++++++
Sbjct: 333 IHHFKLFSEGMHVPEGEAYVGIEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSSMDEM 392
Query: 297 GKGSFLADIVAII 309
+G LAD+V+II
Sbjct: 393 SRGHMLADVVSII 405
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E KT+ Q +PY DRLDY+SMM NE Y +A+EKLL ++
Sbjct: 30 GEVVERADPHIGLLHRGTEKLAETKTFLQNVPYMDRLDYMSMMANEHAYVMAIEKLLGVD 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|254466915|ref|ZP_05080326.1| NADH dehydrogenase (quinone), D subunit [Rhodobacterales bacterium
Y4I]
gi|206687823|gb|EDZ48305.1| NADH dehydrogenase (quinone), D subunit [Rhodobacterales bacterium
Y4I]
Length = 412
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/285 (52%), Positives = 196/285 (68%), Gaps = 25/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI R+LNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 118 IRVLYSEIGRVLNHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERACGARLHAAYFRP 177
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P LLDDI + F LD+++ +LTENR++ QR D+G+V+ +D YGFS
Sbjct: 178 GGVHQDLPDDLLDDIDLWAMEFPKVLDDIDGLLTENRIFKQRNCDIGVVTEDDIQKYGFS 237
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ FEF +PIG +G+ + M+EMRQS I+ QAI
Sbjct: 238 GVMVRGSGLAWDLRRAQPYECYDEFEFQVPIGKNGDCYDRYLCRMEEMRQSTSIIRQAIA 297
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ E D M K+S P R +MK G+ VP G Y AVEAPKGE
Sbjct: 298 KLR--EATGDVMARGKLSPPKRGDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGE 355
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DG++KPYR KI+APGF HL A++ + KG LAD+ AII
Sbjct: 356 FGVYLVADGSNKPYRSKIRAPGFLHLQAMDHVAKGHQLADVAAII 400
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 53/73 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL
Sbjct: 51 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGTV 110
Query: 363 VPLRAKYIRVMFT 375
VP R + IRV+++
Sbjct: 111 VPRRGQLIRVLYS 123
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 22 EQKIRNFNINFGPQHPAAHGVLRLVLEL 49
>gi|398836856|ref|ZP_10594182.1| NADH dehydrogenase I, D subunit [Herbaspirillum sp. YR522]
gi|398210643|gb|EJM97285.1| NADH dehydrogenase I, D subunit [Herbaspirillum sp. YR522]
Length = 417
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G HALDVGAM + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGAHALDVGAMGVLLYAFREREDLFDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDSMPQYKASVVRNERAIRELNENRQGSLLDFIEDFTNRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL GFSG MLRGSG++WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGFSGPMLRGSGVEWDLRKKQPYEVYDLLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
+G+ ++ + EMRQS RI++Q + + G V TD+ KI+ P R+EMK
Sbjct: 274 KNGDSYDRYLVRVAEMRQSNRIIKQCVEWLRNNPGPVITDNHKIAPPKRTEMKSNMEDLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VPPG Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHL AL ++
Sbjct: 334 HHFKLFTEGFRVPPGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLQALNEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E KT+ Q++PY DRLDYVSMM NE Y LA+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRGTEKLAEQKTFLQSVPYMDRLDYVSMMSNEHGYVLAIERLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|416974642|ref|ZP_11937502.1| NADH dehydrogenase subunit D [Burkholderia sp. TJI49]
gi|325520400|gb|EGC99518.1| NADH dehydrogenase subunit D [Burkholderia sp. TJI49]
Length = 417
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALAKMNEARSGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRLDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS+RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSIRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|194289162|ref|YP_002005069.1| NADH dehydrogenase subunit d [Cupriavidus taiwanensis LMG 19424]
gi|229891387|sp|B3R3X0.1|NUOD_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|193222997|emb|CAQ69002.1| NADH:ubiquinone oxidoreductase complex I, chain D [Cupriavidus
taiwanensis LMG 19424]
Length = 417
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 194/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G+HALDVGAM F + F ERE M + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGSHALDVGAMAVFLYAFREREDMFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYRASKVHNERAIKAMNEARSGSLLDFIEDFTNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR D+G+VS E AL GF+G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVDIGVVSPERALQMGFTGPMLRGSGIAWDLRKKQPYEVYDKLDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS RI++Q ++ + G V T++ K++ PSR +MK
Sbjct: 274 VGGDCYARYLVRVEEMRQSNRIIKQCVDWLRRNPGPVITENHKVAPPSRVDMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y AVE PKGEFG+Y +SDG +KPYR KI+APGFAHLAAL+++
Sbjct: 334 HHFKLFTEGIHVPEGEAYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFAHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQSVPYMDRLDYVSMMVNEHAYVMAIERLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPVRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|385203220|ref|ZP_10030090.1| NADH dehydrogenase I, D subunit [Burkholderia sp. Ch1-1]
gi|385183111|gb|EIF32385.1| NADH dehydrogenase I, D subunit [Burkholderia sp. Ch1-1]
Length = 417
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNAKALSRMNENRQGSLLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E ALN G +G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALNLGMTGAMLRGSGIEWDLRKKQPYEVYDKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RIV+Q I K P G V D+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSTRIVKQCIEWLRKNP-GPVMVDNHKVAPPSRVGMKSNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YL+SDG +KPYR KI+APG+AHL+ L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGYAHLSTLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTFIQSVPYMDRLDYVSMMVNEHGYVMAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPVRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|134296430|ref|YP_001120165.1| NADH dehydrogenase subunit D [Burkholderia vietnamiensis G4]
gi|387902790|ref|YP_006333129.1| NADH-ubiquinone oxidoreductase subunit D [Burkholderia sp. KJ006]
gi|229891281|sp|A4JGC7.1|NUOD_BURVG RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|134139587|gb|ABO55330.1| NADH dehydrogenase subunit D [Burkholderia vietnamiensis G4]
gi|387577682|gb|AFJ86398.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia sp. KJ006]
Length = 417
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQFKASKIRNEKALAKMNEARSGSVLDFIDDFFTRFPKCIDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ ++ ++EMRQS+RI +Q I + G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSVRIAKQCIEWLRKNQGPVMTDNHKVAPPSRVGMKTNMEDLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 334 HHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEMA 393
Query: 298 KGSFLADIVAII 309
+G +AD V II
Sbjct: 394 RGHMIADAVTII 405
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+E+LL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENKTFIQSVPYMDRLDYVSMMVNEHGYVLAIERLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|107023185|ref|YP_621512.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia AU 1054]
gi|116690267|ref|YP_835890.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia HI2424]
gi|206560700|ref|YP_002231465.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia J2315]
gi|254247660|ref|ZP_04940981.1| NADH dehydrogenase I, D subunit [Burkholderia cenocepacia PC184]
gi|421867932|ref|ZP_16299584.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia cenocepacia
H111]
gi|444359647|ref|ZP_21160944.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia BC7]
gi|444369284|ref|ZP_21169045.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia
K56-2Valvano]
gi|123244857|sp|Q1BV16.1|NUOD_BURCA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891271|sp|A0K920.1|NUOD_BURCH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891272|sp|B4E5L9.1|NUOD_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|105893374|gb|ABF76539.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia AU 1054]
gi|116648356|gb|ABK08997.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia HI2424]
gi|124872436|gb|EAY64152.1| NADH dehydrogenase I, D subunit [Burkholderia cenocepacia PC184]
gi|198036742|emb|CAR52642.1| NADH dehydrogenase I chain D [Burkholderia cenocepacia J2315]
gi|358071863|emb|CCE50462.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia cenocepacia
H111]
gi|443599359|gb|ELT67648.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia
K56-2Valvano]
gi|443601604|gb|ELT69741.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia BC7]
Length = 417
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALAKMNEARSGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS+RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSIRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|172061206|ref|YP_001808858.1| NADH dehydrogenase subunit D [Burkholderia ambifaria MC40-6]
gi|229891269|sp|B1YTQ4.1|NUOD_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|171993723|gb|ACB64642.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria MC40-6]
Length = 417
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALAKMNEARSGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS+RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSIRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+E+LL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENKTFIQSVPYMDRLDYVSMMVNEHGYVLAIERLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|445498172|ref|ZP_21465027.1| NADH-quinone oxidoreductase subunit D [Janthinobacterium sp. HH01]
gi|444788167|gb|ELX09715.1| NADH-quinone oxidoreductase subunit D [Janthinobacterium sp. HH01]
Length = 417
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/312 (46%), Positives = 197/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +G HALDVGAM PF + F +RE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGAHALDVGAMGPFLYCFRDREDLFDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQHKPSIIRSAKAVAGLNEHRQGSLLDFIEAFTGRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ EDAL GF+G MLRGSGI+WDLRK QPY+ Y+ +FD+PIG
Sbjct: 214 LTDNRIWKQRTVGIGVVAPEDALAMGFTGAMLRGSGIQWDLRKHQPYEVYDLMDFDVPIG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
T+G+ ++ ++E+RQS +I++Q + + G V TD+ K++ P R +MK
Sbjct: 274 TNGDCYDRYLVRVEELRQSNKIIKQCVEWLRNNPGPVMTDNRKVAPPGRVDMKTNMESLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VPPG Y+AVE PKGEFG+YL+SDG +KPYR K++AP +AHL +L+++
Sbjct: 334 HHFKLFTEGFHVPPGEAYSAVEHPKGEFGIYLISDGANKPYRMKLRAPDYAHLQSLDEMA 393
Query: 298 KGSFLADIVAII 309
+G +AD V II
Sbjct: 394 RGHMIADAVTII 405
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E KTY Q++PY DRLDYVSMMCNE Y +A+EKLL +E
Sbjct: 30 GEVIQRADPHIGLLHRGTEKLAEQKTYLQSVPYMDRLDYVSMMCNEHAYVMAIEKLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|161524207|ref|YP_001579219.1| NADH dehydrogenase subunit D [Burkholderia multivorans ATCC 17616]
gi|189351036|ref|YP_001946664.1| NADH dehydrogenase subunit D [Burkholderia multivorans ATCC 17616]
gi|221199659|ref|ZP_03572703.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2M]
gi|221205441|ref|ZP_03578456.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2]
gi|221211738|ref|ZP_03584717.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD1]
gi|421469606|ref|ZP_15918053.1| NADH dehydrogenase subunit D [Burkholderia multivorans ATCC
BAA-247]
gi|421478360|ref|ZP_15926123.1| NADH dehydrogenase subunit D [Burkholderia multivorans CF2]
gi|229891273|sp|A9AFZ0.1|NUOD_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|160341636|gb|ABX14722.1| NADH dehydrogenase I, D subunit [Burkholderia multivorans ATCC
17616]
gi|189335058|dbj|BAG44128.1| NADH dehydrogenase I chain D [Burkholderia multivorans ATCC 17616]
gi|221169099|gb|EEE01567.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD1]
gi|221174279|gb|EEE06711.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2]
gi|221180944|gb|EEE13347.1| NADH-quinone oxidoreductase, D subunit [Burkholderia multivorans
CGD2M]
gi|400224953|gb|EJO55148.1| NADH dehydrogenase subunit D [Burkholderia multivorans CF2]
gi|400229457|gb|EJO59305.1| NADH dehydrogenase subunit D [Burkholderia multivorans ATCC
BAA-247]
Length = 417
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALAKMNEARSGSVLDFIDDFFTRFPKCIDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS+RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSVRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGIA 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|170698112|ref|ZP_02889192.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria IOP40-10]
gi|171316306|ref|ZP_02905527.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria MEX-5]
gi|170136970|gb|EDT05218.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria IOP40-10]
gi|171098532|gb|EDT43333.1| NADH dehydrogenase I, D subunit [Burkholderia ambifaria MEX-5]
Length = 417
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALAKMNEARSGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS+RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSIRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+E+LL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVLAIERLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|402565958|ref|YP_006615303.1| NADH dehydrogenase I subunit D [Burkholderia cepacia GG4]
gi|402247155|gb|AFQ47609.1| NADH dehydrogenase I, D subunit [Burkholderia cepacia GG4]
Length = 417
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALAKMNESRSGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS+RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSIRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+E+LL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVLAIERLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|220934165|ref|YP_002513064.1| NADH dehydrogenase subunit D [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995475|gb|ACL72077.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 417
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/321 (47%), Positives = 197/321 (61%), Gaps = 50/321 (15%)
Query: 38 FGPQHP-AAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERAS 96
G Q P A + ++F EITRILNH++ +G HALD+GAMT F + F ERE +M+ YE S
Sbjct: 86 LGVQAPIRAQYIRVMFDEITRILNHLLWLGAHALDIGAMTVFLYAFREREDLMDCYEAVS 145
Query: 97 GARMHAAYVRPGGVALDIP-------------------------IGLLDDIYHFISTFSA 131
GAR+HA Y RPGGVA D+P +LD I F F
Sbjct: 146 GARLHATYYRPGGVARDLPGSMPQYQASRFKSQKEVDALNQVRQGSMLDFIEAFTERFPG 205
Query: 132 RLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYEN 191
+DE E +LT+NR+W QRT VG+VS E A+ GF+G MLRGSGI+WDLR+ QPY+ Y+
Sbjct: 206 CVDEYETLLTDNRIWKQRTVGVGVVSPERAMQMGFTGPMLRGSGIEWDLRRKQPYEVYDR 265
Query: 192 FEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSE 243
+F IP+G +G+ ++ ++EMRQS RI+ Q ++ K P G V +D KI+ P R E
Sbjct: 266 LDFQIPVGVNGDCYDRYLVRIEEMRQSNRIIRQCVDWLRKNP-GPVMLEDHKIAPPRREE 324
Query: 244 MK---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFA 288
MK G+ +P G Y AVE PKGEFGVYLVSDG +KPYR K++APGFA
Sbjct: 325 MKADMESLIHHFKLFTEGFCLPEGEAYAAVEHPKGEFGVYLVSDGANKPYRLKVRAPGFA 384
Query: 289 HLAALEKIGKGSFLADIVAII 309
HLA L ++ G LAD+VAII
Sbjct: 385 HLAGLNEMATGHMLADVVAII 405
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E K Y Q++ Y DRLDYVSMMCNE Y LA+EKLL ++
Sbjct: 30 GEVVQRADPHIGLLHRGTEKLAESKPYNQSIGYMDRLDYVSMMCNEHGYVLAMEKLLGVQ 89
Query: 363 VPLRAKYIRVMF 374
P+RA+YIRVMF
Sbjct: 90 APIRAQYIRVMF 101
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPSAHGVLRLVLEL 28
>gi|115352335|ref|YP_774174.1| NADH dehydrogenase subunit D [Burkholderia ambifaria AMMD]
gi|122322644|sp|Q0BDD3.1|NUOD_BURCM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|115282323|gb|ABI87840.1| NADH dehydrogenase subunit D [Burkholderia ambifaria AMMD]
Length = 417
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALARMNEARSGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS+RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSIRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+E+LL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVLAIERLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|390572966|ref|ZP_10253158.1| NADH dehydrogenase subunit D [Burkholderia terrae BS001]
gi|420253864|ref|ZP_14756898.1| NADH dehydrogenase I, D subunit [Burkholderia sp. BT03]
gi|389935084|gb|EIM97020.1| NADH dehydrogenase subunit D [Burkholderia terrae BS001]
gi|398050740|gb|EJL43090.1| NADH dehydrogenase I, D subunit [Burkholderia sp. BT03]
Length = 417
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/310 (48%), Positives = 193/310 (62%), Gaps = 49/310 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF E+TR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY RP
Sbjct: 97 IRVLFDEVTRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRP 156
Query: 108 GGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P LLD I F + F +DE E +LT+
Sbjct: 157 GGVYRDLPDAMPQYKASKIRNAKALSKMNETRQGSLLDFIEDFFNRFPKCVDEYETLLTD 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QR +G+VS E AL G +G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G +G
Sbjct: 217 NRIWKQRLVGIGVVSPERALQLGMTGPMLRGSGIEWDLRKKQPYEVYDQMDFDIPVGVNG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK--------- 245
+ ++ ++EMRQS RI +Q I K P G V TD+ KI+ PSR MK
Sbjct: 277 DCYDRYLVRVEEMRQSTRIAKQCIEWLRKNP-GPVMTDNHKIAPPSRVGMKSNMEDLIHH 335
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APG+AHL+AL+++ +G
Sbjct: 336 FKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMARG 395
Query: 300 SFLADIVAII 309
+AD V II
Sbjct: 396 HMIADAVTII 405
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVMAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RAKYIRV+F
Sbjct: 90 VPIRAKYIRVLF 101
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|78067043|ref|YP_369812.1| NADH dehydrogenase subunit D [Burkholderia sp. 383]
gi|123568007|sp|Q39EE8.1|NUOD_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|77967788|gb|ABB09168.1| NADH dehydrogenase subunit D [Burkholderia sp. 383]
Length = 417
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALAKMNEARSGSVLDFIDDFFARFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS+RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSIRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|383757415|ref|YP_005436400.1| NADH-quinone oxidoreductase, D subunit NuoD [Rubrivivax gelatinosus
IL144]
gi|381378084|dbj|BAL94901.1| NADH-quinone oxidoreductase, D subunit NuoD [Rubrivivax gelatinosus
IL144]
Length = 417
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 145/306 (47%), Positives = 190/306 (62%), Gaps = 47/306 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAE+TR+LNH++ +GTH+LD GAM F + F ERE + + YE SGARMHAAY RPGGV
Sbjct: 100 MFAELTRLLNHLLWLGTHSLDCGAMNVFLYAFREREDIFDMYEAVSGARMHAAYFRPGGV 159
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P LLD I F+ F +R+D+ E +LT+NR+
Sbjct: 160 YRDLPDSMPQYTFSKIRNERGMKELNAKRQGSLLDFIEEFVKRFPSRVDDYETLLTDNRI 219
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+V + A GF+G MLRGSGI WDLRK QPYD Y+ EFDIP+G G+
Sbjct: 220 WKQRTVGIGVVEPDRAKALGFTGPMLRGSGIAWDLRKQQPYDAYDRVEFDIPVGVQGDTY 279
Query: 204 ---VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------------- 245
++ M+EMRQS IV+Q ++ + G V TD+ K++ P+R +MK
Sbjct: 280 DRYLVRMEEMRQSNHIVQQCVDWLRANPGPVITDNHKVAPPARVDMKANMEELIHHFKLF 339
Query: 246 --GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLA 303
G VP G Y AVE PKGEFG+YL+SDG +KPYR KI+ PGF HLAAL+++ +G LA
Sbjct: 340 SEGMHVPEGEAYAAVEHPKGEFGIYLISDGANKPYRMKIRPPGFVHLAALDEMSRGHMLA 399
Query: 304 DIVAII 309
D VAII
Sbjct: 400 DAVAII 405
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q LPY DRLDYVSMM NEQ Y LAVEKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTFLQTLPYMDRLDYVSMMVNEQAYCLAVEKLLGIE 89
Query: 363 VPLRAKYIRVMFT 375
VPLRAKYIR MF
Sbjct: 90 VPLRAKYIRTMFA 102
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|134095028|ref|YP_001100103.1| NADH dehydrogenase subunit D [Herminiimonas arsenicoxydans]
gi|229891399|sp|A4G641.1|NUOD_HERAR RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|133738931|emb|CAL61978.1| NADH-ubiquinone oxidoreductase D subunit (NADH dehydrogenase
subunit D) [Herminiimonas arsenicoxydans]
Length = 417
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 194/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGAHALDVGAMGVFLYAFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQHKASIIRNAKAINKLNENRQGSLLDFIEDFTNRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR VG+VS E A+ GF+G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGVGVVSPERAMAMGFTGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
T+G+ ++ ++EMRQS RI++Q + + G V TD+ K++ PSR +MK
Sbjct: 274 TNGDCYDRYLVRVEEMRQSNRIIKQCVEWLRNNPGSVMTDNHKVAPPSRVDMKSNMEDLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFGVYL+SDG +KPYR KI+APGF HL L+++
Sbjct: 334 HHFKLFTEGFHVPVGEAYAAVEHPKGEFGVYLISDGANKPYRMKIRAPGFPHLQGLDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q++PY DRLDYVSMMCNE Y +++EK+LN+E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTYLQSVPYMDRLDYVSMMCNEHAYVMSIEKMLNLE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|334129593|ref|ZP_08503397.1| NADH-ubiquinone oxidoreductase D subunit [Methyloversatilis
universalis FAM5]
gi|333445278|gb|EGK73220.1| NADH-ubiquinone oxidoreductase D subunit [Methyloversatilis
universalis FAM5]
Length = 417
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 196/313 (62%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +G HALDVGAMT F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLWLGAHALDVGAMTVFLYAFREREDLMDAYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD + F F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYQANKFKNADAIKRLNENRSGSMLDFLQDFTDRFPRYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR D+GIV+ E A GF+G MLRGSGI WDLRK QPY+ Y+ EFDIP+G
Sbjct: 214 LTDNRIWKQRLVDIGIVTPERAKALGFTGPMLRGSGIAWDLRKKQPYEVYDRMEFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
T+G+ ++ ++EMRQS RI+ Q I+ K P G V +D+ K++ PSR MK
Sbjct: 274 TNGDSYDRYLVRIEEMRQSNRIIRQCIDWLRKNP-GPVISDNHKVAPPSREAMKGNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G VP G Y AVE PKGEFG+Y +SDG +KPYR KI+APGFAHLAA++++
Sbjct: 333 IHHFKLFTEGIHVPSGECYAAVEHPKGEFGIYAMSDGANKPYRLKIRAPGFAHLAAMDEM 392
Query: 297 GKGSFLADIVAII 309
+G ++D+VAII
Sbjct: 393 SRGHMISDVVAII 405
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHR TEKL E +T+ Q++PY DRLDYVSMMCNE Y +A+EKLLN++
Sbjct: 30 GEVVQRADPHIGLLHRATEKLAETRTWVQSVPYMDRLDYVSMMCNEHAYCMAIEKLLNLD 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRVMF
Sbjct: 90 VPERAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|113867073|ref|YP_725562.1| NADH dehydrogenase subunit D [Ralstonia eutropha H16]
gi|122947020|sp|Q0KCS7.1|NUOD_RALEH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|113525849|emb|CAJ92194.1| NADH dehydrogenase chain D [Ralstonia eutropha H16]
Length = 417
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G+HALDVGAM F + F ERE M + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGSHALDVGAMAVFLYAFREREDMFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYRASKVHNERAIKAMNEARSGSLLDFIEDFTNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR D+G+VS E AL GF+G MLRGSGI+WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVDIGVVSPERALQMGFTGPMLRGSGIEWDLRKKQPYEVYDKLDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS RI+ Q + + G V TD+ K++ PSR +MK
Sbjct: 274 VGGDCYARYLVRVEEMRQSNRIIRQCVEWLRRNPGPVITDNHKVAPPSRVDMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y AVE PKGEFG+Y +SDG +KPYR KI+APGF HLAAL+++
Sbjct: 334 HHFKLFTEGMHVPEGEAYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFPHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQSVPYMDRLDYVSMMVNEHAYVMAIERLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPVRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|289207896|ref|YP_003459962.1| NADH dehydrogenase I subunit D [Thioalkalivibrio sp. K90mix]
gi|288943527|gb|ADC71226.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio sp. K90mix]
Length = 417
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +G HALD+GAM F + F ERE +M+ YE SGARMHA Y
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGAHALDIGAMAVFLYAFREREDLMDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIP-------------------------IGLLDDIYHFISTFSARLDEVEDM 139
RPGGVA D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVARDLPGTMPQYQPSSWKSQDVVDDLNRIRQGSLLDFIEAFTERFPGCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V E A+ GF+G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVDPERAMQLGFTGPMLRGSGIEWDLRKKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ ++ ++EMRQS RI+ Q ++ + G V +D KI+ P R EMK
Sbjct: 274 VNGDCYDRYLVRIEEMRQSNRIIRQCVDWLRQNPGPVLLEDHKITPPKREEMKADMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G +P G Y AVE PKGEFGVYLVSDG++KPYR K++ PGF HL+AL+++
Sbjct: 334 HHFKLFTEGMCLPEGEAYAAVEHPKGEFGVYLVSDGSNKPYRLKVRPPGFVHLSALDEMA 393
Query: 298 KGSFLADIVAII 309
+G LAD+VAII
Sbjct: 394 RGHMLADVVAII 405
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E K Y Q++ Y DRLDYVSMM NE Y LA+EKLL IE
Sbjct: 30 GEVVQRADPHIGLLHRGTEKLAESKPYNQSIGYMDRLDYVSMMANEHGYVLAMEKLLQIE 89
Query: 363 VPLRAKYIRVMF 374
PLRA+YIRVMF
Sbjct: 90 APLRAQYIRVMF 101
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHP+AHGVL L E+
Sbjct: 3 EIRNFTLNFGPQHPSAHGVLRLVLEM 28
>gi|118602278|ref|YP_903493.1| NADH dehydrogenase subunit D [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|229891301|sp|A1AVR5.1|NUOD_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|118567217|gb|ABL02022.1| NADH dehydrogenase subunit D [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 417
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +GTH LDVGAM+ F + F EREK+++ YE SG+RMHA Y
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGTHGLDVGAMSIFLYAFREREKLIDCYEAVSGSRMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F+ F + + +D+
Sbjct: 154 YRPGGVYRDLPDKMPQYLASGFRTDKELKTMNENRQGSLLDFIADFVKEFPKSIKQYDDL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR ++GIVSA A GF+G MLRGSG+ WDLRK QPY Y+ EFDIP+G
Sbjct: 214 LTDNRIWKQRLVNIGIVSANRAKQLGFTGPMLRGSGVAWDLRKNQPYAVYDQLEFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
G+ ++ M+EMRQS I++Q + + G G V +DD K+S P R++MK
Sbjct: 274 VTGDSYDRYLVRMEEMRQSNHIIKQCVKWLQGNPGAVMSDDHKVSPPKRTDMKGDMESLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY + G Y AVE PKGEFG+YL+SDG +KPYR KI+APGFAHLAA+ ++
Sbjct: 334 HHFKLFTEGYCLSEGEIYRAVEHPKGEFGIYLISDGANKPYRVKIRAPGFAHLAAMNEMA 393
Query: 298 KGSFLADIVAII 309
+G L+D+V II
Sbjct: 394 RGHMLSDVVTII 405
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL+E K Y Q++ Y DRLDYVSMMCNE Y +A+E +L I+
Sbjct: 30 GEVIERADPHIGLLHRGTEKLVESKPYNQSIGYMDRLDYVSMMCNEHAYIMAIETMLGIK 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRVMF
Sbjct: 90 VPERAQYIRVMF 101
Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L EI
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILEI 28
>gi|238028140|ref|YP_002912371.1| NADH dehydrogenase subunit D [Burkholderia glumae BGR1]
gi|237877334|gb|ACR29667.1| NADH dehydrogenase subunit D [Burkholderia glumae BGR1]
Length = 417
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 193/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G+H LDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGSHGLDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDVMPQYKASKIRNEKALSKMNEARQGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQLGLTGAMLRGSGIEWDLRKKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RI +Q I K P G V TD+ KI+ P R +MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSCRIAKQCIEWLRKNP-GPVMTDNHKIAPPKRVDMKSNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G TY AVE PKGEFG+YLVSDG +KPYR KI+APG+AHL+AL ++
Sbjct: 333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALNEM 392
Query: 297 GKGSFLADIVAII 309
G +AD V II
Sbjct: 393 AHGHMIADAVTII 405
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENKTFIQSVPYMDRLDYVSMMANEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|187923343|ref|YP_001894985.1| NADH dehydrogenase subunit D [Burkholderia phytofirmans PsJN]
gi|229891280|sp|B2T2F0.1|NUOD_BURPP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|187714537|gb|ACD15761.1| NADH dehydrogenase I, D subunit [Burkholderia phytofirmans PsJN]
Length = 417
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 148/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F E+TR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEVTRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNAKALSKMNENRQGSLLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E ALN G +G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALNLGMTGAMLRGSGIEWDLRKKQPYEVYDKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RIV+Q I K P G V D+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSTRIVKQCIEWLRKNP-GPVMIDNHKVAPPSRVGMKSNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YL+SDG +KPYR KI+APG+AHL+ L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGYAHLSTLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTFIQSVPYMDRLDYVSMMVNEHGYVMAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPVRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|386815639|ref|ZP_10102857.1| NADH dehydrogenase subunit D [Thiothrix nivea DSM 5205]
gi|386420215|gb|EIJ34050.1| NADH dehydrogenase subunit D [Thiothrix nivea DSM 5205]
Length = 417
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 148/307 (48%), Positives = 191/307 (62%), Gaps = 49/307 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF E+TRILNH++ +G HALDVGAMT F + F ERE +M+ YE SGAR+HA Y RPGGV
Sbjct: 100 LFDEVTRILNHLLWIGAHALDVGAMTMFLYAFREREDLMDAYEAVSGARLHATYYRPGGV 159
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P LLD + F + F +DE E +LT+NR+
Sbjct: 160 YRDLPDSMPQFQSNRFRSEAEAKRLNANRGGSLLDFLEDFTNRFPGYVDEYETLLTDNRI 219
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QR +G+VS E AL GFSG MLRGSGI+WDLRK QPY Y+ +FDIP+G G+
Sbjct: 220 WKQRLVGIGVVSPERALQLGFSGPMLRGSGIEWDLRKKQPYAAYDKMDFDIPVGVQGDSY 279
Query: 204 ---VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------------ 245
++ ++EMRQS RI++Q I K P G V +D K++ P R++MK
Sbjct: 280 DRYLVRVEEMRQSNRIIKQCIAWLRKNP-GPVMLEDSKVAPPKRTDMKEDMEALIQHFKL 338
Query: 246 ---GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFL 302
GY +P G Y AVE PKGEFG Y+VSDG +KPYR KI+APGFAHL+ ++++ KG L
Sbjct: 339 MTEGYCLPAGEAYAAVEHPKGEFGCYIVSDGANKPYRLKIRAPGFAHLSGMDEMSKGHML 398
Query: 303 ADIVAII 309
AD+VAII
Sbjct: 399 ADVVAII 405
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 52/72 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ + DPHIGLLHRGTEKL E K Y Q++ Y DRLDYVSMMCNE Y LA+EKLL I
Sbjct: 30 GETIVRADPHIGLLHRGTEKLAESKPYNQSIGYMDRLDYVSMMCNEHGYVLAIEKLLGIT 89
Query: 363 VPLRAKYIRVMF 374
P RA YIR +F
Sbjct: 90 APERALYIRTLF 101
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGP HPAAHGVL L E+
Sbjct: 3 EIRNFTLNFGPAHPAAHGVLRLVLEM 28
>gi|319761765|ref|YP_004125702.1| NADH dehydrogenase i, d subunit [Alicycliphilus denitrificans BC]
gi|330826545|ref|YP_004389848.1| NADH dehydrogenase I subunit D [Alicycliphilus denitrificans K601]
gi|317116326|gb|ADU98814.1| NADH dehydrogenase I, D subunit [Alicycliphilus denitrificans BC]
gi|329311917|gb|AEB86332.1| NADH dehydrogenase I, D subunit [Alicycliphilus denitrificans K601]
Length = 417
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 146/306 (47%), Positives = 191/306 (62%), Gaps = 47/306 (15%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+F EITR+LNH+M +G++ +D+GA T + F ERE + + YE SGARMHAAY RPGGV
Sbjct: 100 MFGEITRLLNHLMWLGSNGMDLGASTVLMYTFRERETLFDMYEAVSGARMHAAYFRPGGV 159
Query: 111 ALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTENRL 145
D+P GLLD I F + F +DE E +LT+NR+
Sbjct: 160 YRDLPDTMAQLKPSKVRNAKALEEFNRNRQGGLLDFIDDFCAKFPGYVDEYETLLTDNRI 219
Query: 146 WIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-- 203
W QRT +G+VSAE ALN SGVMLRGSG+ WDLRK QPYD Y+ EFDIP+G +G+
Sbjct: 220 WKQRTVGIGVVSAERALNLSMSGVMLRGSGVAWDLRKKQPYDAYDRVEFDIPVGKNGDCY 279
Query: 204 ---VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------------- 245
++ ++EMRQS RI++Q ++ + G V D+ KI+ P R MK
Sbjct: 280 DRYLVRVEEMRQSNRIIKQCVDWLRANPGPVIVDNYKIAPPPRERMKTGMEDLIHHFKLF 339
Query: 246 --GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLA 303
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLAA +++ +G +A
Sbjct: 340 SEGFRVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLAAYDELTRGHMIA 399
Query: 304 DIVAII 309
D VA+I
Sbjct: 400 DAVAVI 405
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHR TEKL EYKTY Q+LPY DRLDYVSMMCNEQ Y LA+EK+L +E
Sbjct: 30 GEVVQRADPHVGLLHRATEKLAEYKTYIQSLPYMDRLDYVSMMCNEQAYCLAIEKMLGVE 89
Query: 363 VPLRAKYIRVMF 374
VPLRAKYIR MF
Sbjct: 90 VPLRAKYIRTMF 101
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYSLNFGPQHPAAHGVLRLVLEL 28
>gi|198284343|ref|YP_002220664.1| NADH dehydrogenase subunit D [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218667952|ref|YP_002427005.1| NADH dehydrogenase subunit D [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218534379|sp|B5EN68.1|NUOD_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|198248864|gb|ACH84457.1| NADH dehydrogenase I, D subunit [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218520165|gb|ACK80751.1| NADH-quinone oxidoreductase, D subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 417
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/313 (46%), Positives = 192/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH++ +G +ALDVGAM+ F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRTLFDEITRILNHLLWLGAYALDVGAMSVFLYCFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPAQMPQYQPSPYRDARRLQELNANRQGSMLDFIEDFARRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V E A+ GF+G MLR SG+ WDLR+ QPY Y + +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVGPERAIQLGFTGPMLRSSGVAWDLRRTQPYAAYADLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
G+ ++ + EMRQS RI+ Q ++ K P G V TDD KI+ PSR EMK
Sbjct: 274 KTGDCYDRYLVRVAEMRQSNRIIVQCVDWLRKNP-GPVITDDFKIAAPSREEMKTSMEAL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G VP G Y AVEAPKGEFG+Y++SDG +KPYR KI+APGF HLAA++++
Sbjct: 333 IHHFKLFSEGMAVPAGEVYAAVEAPKGEFGIYMISDGANKPYRMKIRAPGFPHLAAMDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD+VAI+
Sbjct: 393 ARGHMIADVVAIL 405
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q LPY DRLDYVSM+CNE Y LAVEKLL +E
Sbjct: 30 GEVIERADPHIGLLHRATEKLAENKTYLQNLPYMDRLDYVSMLCNEHAYCLAVEKLLGVE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIR +F
Sbjct: 90 VPVRAQYIRTLF 101
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I N +NFGPQHP+AHGVL L E+
Sbjct: 3 EINNFTMNFGPQHPSAHGVLRLVLEL 28
>gi|91782615|ref|YP_557821.1| NADH dehydrogenase subunit D [Burkholderia xenovorans LB400]
gi|122970575|sp|Q142H0.1|NUOD_BURXL RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|91686569|gb|ABE29769.1| NADH dehydrogenase subunit D [Burkholderia xenovorans LB400]
Length = 417
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 148/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNAKALSKMNENRQGSLLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E ALN G +G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALNLGMTGAMLRGSGIEWDLRKKQPYEVYDKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RIV+Q + K P G V D+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSTRIVKQCVEWLRKNP-GPVMIDNHKVAPPSRVGMKSNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YL+SDG +KPYR KI+APG+AHL+ L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGYAHLSTLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTFIQSVPYMDRLDYVSMMVNEHGYVMAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPVRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|73540667|ref|YP_295187.1| NADH dehydrogenase subunit D [Ralstonia eutropha JMP134]
gi|123625482|sp|Q473U0.1|NUOD_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|72118080|gb|AAZ60343.1| NADH dehydrogenase subunit D [Ralstonia eutropha JMP134]
Length = 417
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 191/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G HALDVGAM F + F ERE M + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGAHALDVGAMAVFLYAFREREDMFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYRASKVHNERAIKVMNEARSGSLLDFIEDFTNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR D+G+VS E AL GF+G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVDIGVVSPERALQMGFTGPMLRGSGIAWDLRKKQPYEVYDKMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS RI++Q I + G V TD+ K++ PSR +MK
Sbjct: 274 VGGDCYARYLVRVEEMRQSNRIIKQCIEWLRRNPGPVITDNHKVAPPSRVDMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y AVE PKGEFG+Y +SDG +KPYR KI+APGF HLAAL+++
Sbjct: 334 HHFKLFTEGMHVPEGEAYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFPHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E K++ Q +PY DRLDYVSMM NE Y +A+E+LL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKSWIQNVPYMDRLDYVSMMSNEHAYVMAIERLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|253996970|ref|YP_003049034.1| NADH dehydrogenase subunit D [Methylotenera mobilis JLW8]
gi|253983649|gb|ACT48507.1| NADH dehydrogenase I, D subunit [Methylotenera mobilis JLW8]
Length = 417
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 197/313 (62%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH++ +G HALDVGAMT F + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRVLNHLLWLGAHALDVGAMTVFLYAFREREDLFDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F A +DE E +
Sbjct: 154 YRPGGVYRDLPNSMPQYQVSSMRNAKTVKAQNANRQGSLLDFIEDFTNRFPAYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E AL G +G MLRGSGI+WDLRK QPY+ Y + +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERALALGMTGPMLRGSGIEWDLRKKQPYEVYADLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ M+E RQS RI++Q ++ K P G V T D K++ P+R MK
Sbjct: 274 VNGDCYDRYLVRMEEFRQSNRIIKQCVDWLRKNP-GPVITADNKVAPPNREGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+Y+VSDG +KPYR KI+APGF HLAAL+++
Sbjct: 333 IHHFKLFTEGFHVPAGEAYAAVEHPKGEFGIYMVSDGANKPYRLKIRAPGFPHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD+VAII
Sbjct: 393 TRGHMIADLVAII 405
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E +TY Q++PY DRLDYVSMM NE Y +A+EK+L +E
Sbjct: 30 GEVIQRADPHIGLLHRGTEKLAENRTYLQSVPYMDRLDYVSMMSNEHAYVMAIEKMLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|375106897|ref|ZP_09753158.1| NADH dehydrogenase I, D subunit [Burkholderiales bacterium
JOSHI_001]
gi|374667628|gb|EHR72413.1| NADH dehydrogenase I, D subunit [Burkholderiales bacterium
JOSHI_001]
Length = 417
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+EITR+LNH+M +G H LD GAM F + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFSEITRLLNHLMWLGAHGLDCGAMNMFVYCFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F ++DE E +
Sbjct: 154 FRPGGVYRDLPDSMPQYKVSKIKNQRAIDALNQNRQGTLLDYIDDFCRRFPTQVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E ALN G +G MLRGSGI WDLRK QPYD Y +FD+ +G
Sbjct: 214 LTDNRIWKQRTVGIGVVTPERALNLGLTGPMLRGSGIAWDLRKNQPYDVYGQVDFDLALG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ ++ ++EMRQS RI++Q + + G V TD+ K++ PSR +MK
Sbjct: 274 VNGDTYDRYLVRVEEMRQSNRIIQQCVAWLRANPGPVITDNHKVAPPSRVDMKTSMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLAAL+++
Sbjct: 334 HHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLAALDEMS 393
Query: 298 KGSFLADIVAII 309
+G +AD VAII
Sbjct: 394 RGHMIADAVAII 405
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q+LPY DRLDYVSMMCNE Y LA+EKL+ I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTYIQSLPYMDRLDYVSMMCNEHAYCLAIEKLMGIQ 89
Query: 363 VPLRAKYIRVMFT 375
VP+RA+YIRVMF+
Sbjct: 90 VPVRAQYIRVMFS 102
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|339325140|ref|YP_004684833.1| NADH-quinone oxidoreductase subunit D [Cupriavidus necator N-1]
gi|338165297|gb|AEI76352.1| NADH-quinone oxidoreductase subunit D [Cupriavidus necator N-1]
Length = 417
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G+HALDVGAM F + F ERE M + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGSHALDVGAMAVFLYAFREREDMFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYRASKVHNERAIKAMNEARSGSLLDFIEDFTNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR D+G+VS E AL GF+G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVDIGVVSPERALQMGFTGPMLRGSGIEWDLRKKQPYEVYDKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS RI++Q + + G V T++ K++ PSR +MK
Sbjct: 274 VGGDCYARYLVRVEEMRQSNRIIKQCVEWLRRNPGPVITENHKVAPPSRVDMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y AVE PKGEFG+Y +SDG +KPYR KI+APGF HLAAL+++
Sbjct: 334 HHFKLFTEGMHVPEGEAYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFPHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q +PY DRLDYVSMM NE Y +A+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQNVPYMDRLDYVSMMVNEHAYVMAIERLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPVRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|295676040|ref|YP_003604564.1| NADH dehydrogenase I subunit D [Burkholderia sp. CCGE1002]
gi|295435883|gb|ADG15053.1| NADH dehydrogenase I, D subunit [Burkholderia sp. CCGE1002]
Length = 417
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 147/313 (46%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF E+TR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEVTRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNAKALSKMNENRQGSLLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSG++WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQLGMTGAMLRGSGVEWDLRKKQPYEVYDKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSCRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKSNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YL+SDG +KPYR KI+APG+AHL++L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGYAHLSSLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMANEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 90 VPLRAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|253998386|ref|YP_003050449.1| NADH dehydrogenase subunit D [Methylovorus glucosetrophus SIP3-4]
gi|313200462|ref|YP_004039120.1| NADH dehydrogenase i subunit D [Methylovorus sp. MP688]
gi|253985065|gb|ACT49922.1| NADH dehydrogenase I, D subunit [Methylovorus glucosetrophus
SIP3-4]
gi|312439778|gb|ADQ83884.1| NADH dehydrogenase I, D subunit [Methylovorus sp. MP688]
Length = 417
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 196/313 (62%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH++ +G HALDVGAMT F + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRVLNHLLWLGAHALDVGAMTVFLYAFREREDLFDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPARMPQYESSTVRAKDEIKRLNENRQGSLLDFIEDFTNRFPGYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E AL G SG MLRGSG WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVTPERALALGLSGPMLRGSGFAWDLRKKQPYEVYDKMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RI++Q I+ K P G V TD+ K++ P+R MK
Sbjct: 274 VNGDCYDRYLVRIEEMRQSNRIIKQCIDWLRKNP-GPVITDNHKVAPPAREGMKQDMESL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YL+SDG +KPYR KI+APGF HLAAL+++
Sbjct: 333 IHHFKLFTEGFHVPAGEAYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGFPHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD+VAII
Sbjct: 393 TRGHMIADLVAII 405
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E +TY Q++PY DRLDYVSMM NE Y +A+EKLL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENRTYLQSVPYMDRLDYVSMMANEHAYVMAIEKLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|167836052|ref|ZP_02462935.1| NADH dehydrogenase subunit D [Burkholderia thailandensis MSMB43]
gi|424902724|ref|ZP_18326240.1| NADH dehydrogenase subunit D [Burkholderia thailandensis MSMB43]
gi|390933099|gb|EIP90499.1| NADH dehydrogenase subunit D [Burkholderia thailandensis MSMB43]
Length = 417
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPEAMPQYKASKIRNERALAKMNEARSGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G M+RGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQLGLTGPMIRGSGIAWDLRKKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSTRIAKQCIEWLRKNP-GPVITDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G TY AVE PKGEFG+YLVSDG +KPYR KI+APG+AHL+AL+++
Sbjct: 333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|53718850|ref|YP_107836.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei K96243]
gi|53725816|ref|YP_103431.1| NADH dehydrogenase subunit D [Burkholderia mallei ATCC 23344]
gi|67642189|ref|ZP_00440949.1| NADH dehydrogenase subunit D [Burkholderia mallei GB8 horse 4]
gi|76808606|ref|YP_332847.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 1710b]
gi|121599344|ref|YP_992472.1| NADH dehydrogenase subunit D [Burkholderia mallei SAVP1]
gi|124383601|ref|YP_001026725.1| NADH dehydrogenase subunit D [Burkholderia mallei NCTC 10229]
gi|126439204|ref|YP_001058341.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 668]
gi|126450476|ref|YP_001079990.1| NADH dehydrogenase subunit D [Burkholderia mallei NCTC 10247]
gi|126453345|ref|YP_001065580.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 1106a]
gi|134283955|ref|ZP_01770651.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
305]
gi|167000365|ref|ZP_02266183.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei PRL-20]
gi|167718846|ref|ZP_02402082.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei DM98]
gi|167737855|ref|ZP_02410629.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 14]
gi|167815039|ref|ZP_02446719.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 91]
gi|167823455|ref|ZP_02454926.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 9]
gi|167845007|ref|ZP_02470515.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei B7210]
gi|167893548|ref|ZP_02480950.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 7894]
gi|167901994|ref|ZP_02489199.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei NCTC 13177]
gi|167910230|ref|ZP_02497321.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei 112]
gi|167918263|ref|ZP_02505354.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei BCC215]
gi|217420099|ref|ZP_03451605.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
576]
gi|226195366|ref|ZP_03790955.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237811585|ref|YP_002896036.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei MSHR346]
gi|242315234|ref|ZP_04814250.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1106b]
gi|254175461|ref|ZP_04882121.1| NADH dehydrogenase I, D subunit [Burkholderia mallei ATCC 10399]
gi|254181184|ref|ZP_04887781.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1655]
gi|254190547|ref|ZP_04897054.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|254195193|ref|ZP_04901622.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
S13]
gi|254202107|ref|ZP_04908470.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei FMH]
gi|254207437|ref|ZP_04913787.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei JHU]
gi|254261360|ref|ZP_04952414.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1710a]
gi|254298536|ref|ZP_04965988.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
406e]
gi|254359859|ref|ZP_04976129.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei
2002721280]
gi|386862391|ref|YP_006275340.1| NADH-ubiquinone oxidoreductase subunit D [Burkholderia pseudomallei
1026b]
gi|403518007|ref|YP_006652140.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei BPC006]
gi|418389921|ref|ZP_12967737.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
354a]
gi|418538028|ref|ZP_13103656.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1026a]
gi|418541524|ref|ZP_13107003.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1258a]
gi|418547768|ref|ZP_13112907.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1258b]
gi|418553950|ref|ZP_13118750.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
354e]
gi|81380046|sp|Q63VN0.1|NUOD_BURPS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|81604654|sp|Q62IN8.1|NUOD_BURMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|123599738|sp|Q3JUA6.1|NUOD_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891274|sp|A3MIA4.1|NUOD_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891275|sp|A2S456.1|NUOD_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891276|sp|A1V2L9.1|NUOD_BURMS RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891277|sp|A3NTA9.1|NUOD_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891278|sp|A3N7M0.1|NUOD_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|52209264|emb|CAH35209.1| NADH dehydrogenase I chain D [Burkholderia pseudomallei K96243]
gi|52429239|gb|AAU49832.1| NADH dehydrogenase I, D subunit [Burkholderia mallei ATCC 23344]
gi|76578059|gb|ABA47534.1| NADH dehydrogenase I, D subunit [Burkholderia pseudomallei 1710b]
gi|121228154|gb|ABM50672.1| NADH dehydrogenase I, D subunit [Burkholderia mallei SAVP1]
gi|124291621|gb|ABN00890.1| NADH dehydrogenase I, D subunit [Burkholderia mallei NCTC 10229]
gi|126218697|gb|ABN82203.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
668]
gi|126226987|gb|ABN90527.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1106a]
gi|126243346|gb|ABO06439.1| NADH dehydrogenase I, D subunit [Burkholderia mallei NCTC 10247]
gi|134244744|gb|EBA44842.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
305]
gi|147746354|gb|EDK53431.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei FMH]
gi|147751331|gb|EDK58398.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei JHU]
gi|148029099|gb|EDK87004.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei
2002721280]
gi|157808218|gb|EDO85388.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
406e]
gi|157938222|gb|EDO93892.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|160696505|gb|EDP86475.1| NADH dehydrogenase I, D subunit [Burkholderia mallei ATCC 10399]
gi|169651941|gb|EDS84634.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
S13]
gi|184211722|gb|EDU08765.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1655]
gi|217397403|gb|EEC37419.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
576]
gi|225932568|gb|EEH28566.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237506696|gb|ACQ99014.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei MSHR346]
gi|238523285|gb|EEP86724.1| NADH dehydrogenase subunit D [Burkholderia mallei GB8 horse 4]
gi|242138473|gb|EES24875.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1106b]
gi|243063699|gb|EES45885.1| NADH-quinone oxidoreductase, D subunit [Burkholderia mallei PRL-20]
gi|254220049|gb|EET09433.1| NADH-quinone oxidoreductase, D subunit [Burkholderia pseudomallei
1710a]
gi|385348788|gb|EIF55384.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1026a]
gi|385357754|gb|EIF63791.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1258a]
gi|385359907|gb|EIF65854.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1258b]
gi|385370897|gb|EIF76119.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
354e]
gi|385375875|gb|EIF80612.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
354a]
gi|385659519|gb|AFI66942.1| NADH-ubiquinone oxidoreductase chain D [Burkholderia pseudomallei
1026b]
gi|403073650|gb|AFR15230.1| NADH dehydrogenase subunit D [Burkholderia pseudomallei BPC006]
Length = 417
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPEAMPQYKASKIRNERALAKMNEARSGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G M+RGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQLGLTGPMIRGSGIAWDLRKKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSTRIAKQCIEWLRKNP-GPVITDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G TY AVE PKGEFG+YLVSDG +KPYR KI+APG+AHL+AL+++
Sbjct: 333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|152979920|ref|YP_001353155.1| NADH dehydrogenase subunit D [Janthinobacterium sp. Marseille]
gi|229891400|sp|A6SY08.1|NUOD_JANMA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|151279997|gb|ABR88407.1| NADH dehydrogenase I chain D [Janthinobacterium sp. Marseille]
Length = 417
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGAHALDVGAMGVFLYAFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQHKASIIRNAKAISQLNENRQGSLLDFIEDFTNRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E A+ GF+G MLRGSG++WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERAMAMGFTGAMLRGSGVEWDLRKKQPYEVYDLMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
T+G+ ++ ++EMRQS RI++Q + + G V TD+ K++ PSR MK
Sbjct: 274 TNGDCYDRYLVRVEEMRQSNRIIKQCVEWLRNNAGPVMTDNHKVAPPSRVGMKSNMEDLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFGVYL+SDG +KPYR KI+APGF HL L+++
Sbjct: 334 HHFKLFTEGFHVPTGEAYAAVEHPKGEFGVYLISDGANKPYRMKIRAPGFPHLQGLDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q++PY DRLDYVSMMCNE Y +A+EK+LNIE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTYLQSVPYMDRLDYVSMMCNEHAYVMAIEKMLNIE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|167562180|ref|ZP_02355096.1| NADH dehydrogenase subunit D [Burkholderia oklahomensis EO147]
gi|167569425|ref|ZP_02362299.1| NADH dehydrogenase subunit D [Burkholderia oklahomensis C6786]
Length = 417
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALARMNETRQGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+V+ E A+ G +G MLRGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVTPERAMQLGLTGPMLRGSGIAWDLRKKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RI +Q I K P G V TD+ KI+ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSTRIAKQCIEWLRKNP-GPVITDNHKIAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G TY AVE PKGEFG+YLVSDG +KPYR KI+APG+AHL+AL+++
Sbjct: 333 IHHFKLFTEGFHVPEGETYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|429462619|ref|YP_007184082.1| NADH dehydrogenase subunit D [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451811625|ref|YP_007448080.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338133|gb|AFZ82556.1| NADH dehydrogenase subunit D [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451776783|gb|AGF47782.1| NADH dehydrogenase I subunit D [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 418
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 145/314 (46%), Positives = 193/314 (61%), Gaps = 49/314 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M++G+HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 93 AQYIRVMFDEITRILNHLMSLGSHALDVGAMAVFLYAFREREDLMDCYEAVSGARMHAAY 152
Query: 105 VRPGGVALDIPI---------------------------GLLDDIYHFISTFSARLDEVE 137
RPGGV D+P LLD IY F F +DE E
Sbjct: 153 YRPGGVYRDLPNSMPMYNDSSKEIRNKKDFDRMNEARSGSLLDFIYDFTERFPKCIDEYE 212
Query: 138 DMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIP 197
+LT+NR+W QR VG+VS + A GF+G MLRGSG+ WDLRK QPY+ Y+N FDIP
Sbjct: 213 SLLTDNRIWKQRLVGVGVVSPDRAKALGFTGPMLRGSGVVWDLRKNQPYEVYDNLSFDIP 272
Query: 198 IGTHGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK----- 245
IG +G+ ++ M EMR+S +I+ Q I+ + G V D+ K P R++MK
Sbjct: 273 IGVNGDCYDRYLVRMAEMRESNKIIRQCIDWLRNNTGAVIADNCKYVPPKRTDMKTGMEE 332
Query: 246 ----------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEK 295
G+ +P G Y++VE PKGEFG+Y++SDG +KPYR KI+APGFAHL +LE+
Sbjct: 333 LIHHFKFFSEGFCIPAGEAYSSVEHPKGEFGIYIISDGANKPYRVKIRAPGFAHLQSLEE 392
Query: 296 IGKGSFLADIVAII 309
+ KG ++D+V II
Sbjct: 393 MSKGHMISDVVTII 406
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHR TEKLIE KTY Q LPY DRLDYVSMMCNE Y +A+EKLL IE
Sbjct: 29 GEVVQKADPHIGLLHRATEKLIENKTYIQGLPYMDRLDYVSMMCNEHAYVMAIEKLLGIE 88
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 89 VPLRAQYIRVMF 100
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEIT 56
I+ +NFGPQHPAAHGVL L E+
Sbjct: 3 IKTYTLNFGPQHPAAHGVLRLILELN 28
>gi|296283833|ref|ZP_06861831.1| NADH dehydrogenase subunit D [Citromicrobium bathyomarinum JL354]
Length = 405
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 132/281 (46%), Positives = 188/281 (66%), Gaps = 21/281 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LFAE+TR+ NH + +G H +DVGAMTP W+FE RE M F+ERASGARMH+A+ RPGG
Sbjct: 113 VLFAELTRMSNHFLNIGAHVMDVGAMTPNLWIFELREDCMNFFERASGARMHSAWFRPGG 172
Query: 110 VALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSG 168
V D+P LL DI ++ L + ++ +NR++ QR D+ +VS EDA+ +GFSG
Sbjct: 173 VHQDVPEKLLVDIGEWLDNRVPELFGDAMSLVMDNRIFKQRNVDIAVVSREDAIKWGFSG 232
Query: 169 VMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINK 223
MLR +G+ WDLRK QPYD Y+ +F++P+GT+ + ++ ++E+ QS++I++Q + +
Sbjct: 233 PMLRAAGVPWDLRKSQPYDVYDRMDFEVPVGTNSDCYDRFMVRVQEVYQSMKIIKQCLAE 292
Query: 224 MPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVY 268
MP G + +DD K+S P R EMK G+ VP G Y A E+PKGEFGVY
Sbjct: 293 MPTGPIASDDRKVSPPKRGEMKQSMEALIHHFKLYTEGFHVPAGEVYVATESPKGEFGVY 352
Query: 269 LVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
LVSDG++KPYRCKI+ F+HL A++ + KG L D AI+
Sbjct: 353 LVSDGSNKPYRCKIRPTAFSHLQAMDMMTKGHMLPDATAIL 393
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPH+GLLHRGTEKLIE+KTY QALPYFDRLDY S +C E Y LA+EKLLN+E
Sbjct: 44 GEIVERVDPHVGLLHRGTEKLIEHKTYLQALPYFDRLDYCSPLCMEHSYVLAIEKLLNLE 103
Query: 363 VPLRAKYIRVMFT 375
VP+RA+Y+RV+F
Sbjct: 104 VPIRAQYLRVLFA 116
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++QI N INFGPQHPAAHGVL + E+
Sbjct: 15 DEQITNYTINFGPQHPAAHGVLRMVMEL 42
>gi|56478179|ref|YP_159768.1| NADH dehydrogenase subunit D [Aromatoleum aromaticum EbN1]
gi|81356984|sp|Q5P1E7.1|NUOD_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|56314222|emb|CAI08867.1| NADH dehydrogenase I, chain D [Aromatoleum aromaticum EbN1]
Length = 417
Score = 276 bits (707), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 148/313 (47%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +GTHALD+GAMT + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLGIGTHALDIGAMTMVLYTFREREDLMDAYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD + F F+ D+ E +
Sbjct: 154 YRPGGVYRDLPDRMPQYVVNKFKNANTVRELNENRQGSLLDFLEDFTERFNGYCDDYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E A +GF+G MLRGSG+ WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVTPEQAKAWGFTGPMLRGSGVAWDLRKKQPYEVYDRMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ + M+EMRQS RIV+Q I+ K P G V D+ K++ P R MK
Sbjct: 274 KNGDCYDRYLCRMEEMRQSNRIVKQCIDWLRKNP-GPVIADNYKVAPPPRERMKGNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G VP G Y A+E PKGEFGVY VSDG +KPYR K++APGFAHLAA+++I
Sbjct: 333 IHHFKLFTEGMHVPSGEVYAAIEHPKGEFGVYAVSDGANKPYRLKLRAPGFAHLAAMDEI 392
Query: 297 GKGSFLADIVAII 309
+G +AD+VAII
Sbjct: 393 ARGHMIADVVAII 405
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E +T+ Q++PY DRLDYVSMMCNE Y LA+E+LL +E
Sbjct: 30 GEVVVRADPHIGLLHRGTEKLAETRTWVQSVPYMDRLDYVSMMCNEHAYCLAIERLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN INFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLVLEL 28
>gi|380512340|ref|ZP_09855747.1| NADH dehydrogenase subunit D [Xanthomonas sacchari NCPPB 4393]
Length = 435
Score = 276 bits (707), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 144/312 (46%), Positives = 196/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M VG++ LD+GAM + F ERE++M+ YE SGARMHA Y
Sbjct: 112 AQYIRTMFDEITRILNHLMWVGSNGLDLGAMAVMLYAFREREELMDVYEAVSGARMHATY 171
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD + F +TF AR+DE E +
Sbjct: 172 YRPGGVYRDLPDRMPKYQESRWHKGNALKRLNAAREGSMLDFLEEFTNTFPARVDEYETL 231
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E A +G +G MLRGSGI WDLRK QPY Y++ +FDIP+G
Sbjct: 232 LTDNRIWKQRTVGIGVVTPEQAYAWGMTGAMLRGSGIAWDLRKKQPYAKYDSVDFDIPLG 291
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
T+G+ ++ + EMRQS RI++Q + K G V ++ K++ P R+EMK
Sbjct: 292 TNGDCYDRYLVRVAEMRQSNRIIKQCVQWLKANPGPVMVENFKVAPPKRAEMKDDMEALI 351
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G TY AVEAPKGEFG YL+SDG +KP+R ++APGFAHL++++ I
Sbjct: 352 HHFKLFSEGYCVPAGETYCAVEAPKGEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAIV 411
Query: 298 KGSFLADIVAII 309
+G LAD+VA+I
Sbjct: 412 RGHMLADVVAMI 423
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 52/72 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKL E K + Q++ Y DRLDYVSMMCNE Y A+E L+ IE
Sbjct: 48 GETVVRADPHIGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVRAIETLMGIE 107
Query: 363 VPLRAKYIRVMF 374
P RA+YIR MF
Sbjct: 108 APERAQYIRTMF 119
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 23 NLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
N +++IRN +NFGPQHPAAHGVL L E+
Sbjct: 14 NPAEAKQEIRNYTMNFGPQHPAAHGVLRLILEM 46
>gi|319787440|ref|YP_004146915.1| NADH dehydrogenase I subunit D [Pseudoxanthomonas suwonensis 11-1]
gi|317465952|gb|ADV27684.1| NADH dehydrogenase I, D subunit [Pseudoxanthomonas suwonensis 11-1]
Length = 435
Score = 276 bits (707), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M VG++ALD+GAM F + F ERE++M+ YE SGARMHAAY
Sbjct: 112 AQYIRTMFDEITRILNHLMWVGSNALDLGAMAVFLYAFREREELMDVYEAVSGARMHAAY 171
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I HF F R+DE E +
Sbjct: 172 YRPGGVYRDLPDHMPKYKESPWHKGAKLKRFNEAREGSLLDYIEHFTREFPKRVDEYETL 231
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E A +G +G MLRGSGI WDLRK QPY Y+ +FDIP+G
Sbjct: 232 LTDNRIWKQRTVGIGVVTPEQAHAWGMTGPMLRGSGIAWDLRKKQPYARYDAVDFDIPVG 291
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ ++ + EMRQS RI+ Q + K G V + K++ P R EMK
Sbjct: 292 VNGDCYDRYLVRIAEMRQSNRIIAQCVKWLKENPGPVMVRNFKVAPPKREEMKDDMEALI 351
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G TY AVEAPKGEFG YLVSDG +KP+R ++APGFAHL+++++I
Sbjct: 352 HHFKLFSEGYCVPAGETYAAVEAPKGEFGCYLVSDGANKPFRVHLRAPGFAHLSSMDEIV 411
Query: 298 KGSFLADIVAII 309
+G LAD+VA+I
Sbjct: 412 RGHMLADVVAMI 423
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 53/72 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ + DPH+GLLHRGTEKL E K + Q++PY DRLDYVSMMCNE Y A+E LL IE
Sbjct: 48 GETIVRADPHVGLLHRGTEKLAESKPFNQSIPYMDRLDYVSMMCNEHAYVRAIETLLGIE 107
Query: 363 VPLRAKYIRVMF 374
P RA+YIR MF
Sbjct: 108 APERAQYIRTMF 119
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ ++IRN +NFGPQHPAAHGVL L E+
Sbjct: 18 LRQEIRNYTMNFGPQHPAAHGVLRLILEM 46
>gi|374263777|ref|ZP_09622324.1| NADH dehydrogenase I, D subunit [Legionella drancourtii LLAP12]
gi|363535899|gb|EHL29346.1| NADH dehydrogenase I, D subunit [Legionella drancourtii LLAP12]
Length = 417
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 194/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F E+TRILNH++ +G ALD+GAMT F + F ERE + + YE SGARMHA Y
Sbjct: 94 AQYIRTMFDEVTRILNHLLWLGAIALDIGAMTVFLYCFREREDLFDCYEAVSGARMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGVA D+P LLD ++ F F +DE E +
Sbjct: 154 YRPGGVARDLPDTMAQYKASRWHSEREVEKLNEDRCGSLLDFLWAFTERFPRCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT D+G+VS E+AL +GF+G MLRGSGI WDLRK Q Y Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVDIGVVSPEEALQWGFTGPMLRGSGIAWDLRKKQSYAAYDKVDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++E+RQS RI+ Q I + G VR DD KI+ P R EMK
Sbjct: 274 KTGDCYDRYLVRVEELRQSNRIIRQCIEWLRNNPGPVRVDDHKITPPRRVEMKHDMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ +P G Y+AVEAPKGEFG+Y+VSDG +KPYR KI+APGFAHL++ +++
Sbjct: 334 HHFKLFTEGFCLPRGEVYSAVEAPKGEFGIYMVSDGANKPYRLKIRAPGFAHLSSYDEMV 393
Query: 298 KGSFLADIVAII 309
+G LAD VAI+
Sbjct: 394 RGHMLADGVAIL 405
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 51/65 (78%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHR TEKL E K Y Q + Y DRLDYVSMMCNE Y A+EKLL IEVP+RA+Y
Sbjct: 37 DPHIGLLHRATEKLAETKPYIQNIGYMDRLDYVSMMCNEHAYVNAIEKLLGIEVPVRAQY 96
Query: 370 IRVMF 374
IR MF
Sbjct: 97 IRTMF 101
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+++N +NFGPQHPAAHGVL L E+
Sbjct: 3 ELKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|330817789|ref|YP_004361494.1| NADH dehydrogenase subunit delta [Burkholderia gladioli BSR3]
gi|327370182|gb|AEA61538.1| NADH dehydrogenase delta subunit [Burkholderia gladioli BSR3]
Length = 417
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/310 (47%), Positives = 192/310 (61%), Gaps = 49/310 (15%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EITR+LNH+M +G+H LDVGAM F + F ERE +M+ YE SGARMHAAY RP
Sbjct: 97 IRVLFDEITRVLNHLMWIGSHGLDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAYYRP 156
Query: 108 GGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDMLTE 142
GGV D+P +LD I F + F +DE E +LT+
Sbjct: 157 GGVYRDLPDVMPQYKASKIRNAKALEKMNEARQGSVLDFIDDFFTRFPKCVDEYETLLTD 216
Query: 143 NRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHG 202
NR+W QR +G+VS E AL G +G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G +G
Sbjct: 217 NRIWKQRLVGIGVVSPERALQLGLTGAMLRGSGIEWDLRKKQPYEVYDRLDFDIPVGVNG 276
Query: 203 N-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK--------- 245
+ ++ ++EMRQS RI +Q I K P G V TD+ K++ P R +MK
Sbjct: 277 DCYDRYLVRVEEMRQSCRIAKQCIEWLRKNP-GPVMTDNHKVAPPKRVDMKSNMEDLIHH 335
Query: 246 ------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKG 299
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APG+AHL+AL ++ +G
Sbjct: 336 FKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALNEMARG 395
Query: 300 SFLADIVAII 309
+AD V II
Sbjct: 396 HMIADAVTII 405
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP RAKYIRV+F
Sbjct: 90 VPERAKYIRVLF 101
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|209518512|ref|ZP_03267333.1| NADH dehydrogenase I, D subunit [Burkholderia sp. H160]
gi|209501057|gb|EEA01092.1| NADH dehydrogenase I, D subunit [Burkholderia sp. H160]
Length = 417
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/313 (46%), Positives = 194/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF E+TR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEVTRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNAKALSKMNENRQGSLLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSG++WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQLGMTGAMLRGSGVEWDLRKKQPYEVYDKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS RI +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSSRIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKSNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YL+SDG +KPYR KI+APG+AHL++L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLISDGANKPYRLKIRAPGYAHLSSLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL I+
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEGKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGID 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRV+F
Sbjct: 90 VPVRAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|329914959|ref|ZP_08276195.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium
IMCC9480]
gi|327545009|gb|EGF30334.1| NADH-ubiquinone oxidoreductase chain D [Oxalobacteraceae bacterium
IMCC9480]
Length = 417
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 195/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH++ +G HALDVGAM F + F ERE +M+ YE SGAR+HAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLLWLGAHALDVGAMGVFLYAFREREDLMDCYEAVSGARLHAAY 153
Query: 105 VRPGGVALDIP----------------IG---------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P IG LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPEVMPKYSASILRNAKAIGQLNENRQGSLLDFIEDFTNRFPRYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR VG+VS E AL GF+G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGVGVVSPERALAMGFTGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
+G+ ++ ++EMRQS +I++Q + + G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSNKIIKQCVEWLRNNPGPVMTDNHKVAPPSRVNMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VPPG Y AVE PKGEFGVYL+SDG +KPYR KI+APGFAHL L ++
Sbjct: 334 HHFKLFTEGFHVPPGEAYAAVEHPKGEFGVYLISDGANKPYRLKIRAPGFAHLQGLNEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q++PY DRLDYVSMMCNE Y +++EKLL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTYLQSVPYMDRLDYVSMMCNEHGYVMSIEKLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|254468716|ref|ZP_05082122.1| NADH dehydrogenase (quinone), D subunit [beta proteobacterium KB13]
gi|207087526|gb|EDZ64809.1| NADH dehydrogenase (quinone), D subunit [beta proteobacterium KB13]
Length = 417
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/312 (45%), Positives = 196/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH++ +G HALDVGAM+ F + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRLLNHLLWLGCHALDVGAMSVFLYTFREREDLFDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDHMPQYQNTRFSRPSETHKLNENRQGSLLDFIEDFATRFPGYIDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERAIELGFTGPMLRGSGIEWDLRKKQPYEVYDKLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS+ +++Q + G V +D+ K + P R++MK
Sbjct: 274 VEGDCYDRYLVRIEEMRQSVHLIKQCTKWLRENSGPVISDNQKFAPPKRTDMKEDMESMI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ +P G Y AVE PKGEFG+Y+VSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 334 HHFKLFTEGFHLPKGEAYAAVEHPKGEFGIYMVSDGANKPYRLKIRAPGFAHLASLDEMT 393
Query: 298 KGSFLADIVAII 309
KG ++D+VAII
Sbjct: 394 KGHMISDLVAII 405
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E +TY Q++PY DRLDYVSMM NE + +A+EK+LN++
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAENRTYIQSVPYMDRLDYVSMMMNEHAFVMAIEKMLNLK 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRV+F
Sbjct: 90 VPVRAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTMNFGPQHPAAHGVLRLVLEL 28
>gi|148244392|ref|YP_001219086.1| NADH dehydrogenase subunit D [Candidatus Vesicomyosocius okutanii
HA]
gi|229891305|sp|A5CXG0.1|NUOD_VESOH RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|146326219|dbj|BAF61362.1| NADH dehydrogenase I chain D [Candidatus Vesicomyosocius okutanii
HA]
Length = 417
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 143/312 (45%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH+M +GTH LDVGAM+ F + F EREK+++ YE SG+RMHA Y
Sbjct: 94 AQYIRVMFDEITRILNHLMWLGTHGLDVGAMSIFLYAFREREKLIDCYEAVSGSRMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F+ F + + +D+
Sbjct: 154 YRPGGVYRDLPDKMPQYLASDFRTSKELETMNENRQGSLLDFIADFVKEFPKSIKQYDDL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR ++G+VSA A GF+G MLRGSG++WDLRK QPY Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVNIGVVSANRAKQLGFTGPMLRGSGVEWDLRKNQPYAVYDQLKFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ M+EMRQS I++Q + + G V +DD K+S P R+ MK
Sbjct: 274 MTGDSYDRYLVRMEEMRQSNYIIKQCVKWLRENPGAVMSDDHKVSQPKRTNMKNDMESLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY +P G Y AVE PKGEFGVYL+SDG +KPYR KI+APGF+HLAA+ ++
Sbjct: 334 HHFKLFTEGYCLPEGEVYRAVEHPKGEFGVYLISDGANKPYRVKIRAPGFSHLAAMNEMT 393
Query: 298 KGSFLADIVAII 309
+G L+D+V II
Sbjct: 394 RGHMLSDVVTII 405
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL+E K Y Q++ Y DRLDYVSMMCNE Y +A+E +LN++
Sbjct: 30 GEVIERADPHIGLLHRGTEKLVESKPYNQSIGYMDRLDYVSMMCNEHAYVMAIEAMLNLK 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRVMF
Sbjct: 90 VPKRAQYIRVMF 101
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L EI
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILEI 28
>gi|255019910|ref|ZP_05291985.1| NADH-ubiquinone oxidoreductase chain D [Acidithiobacillus caldus
ATCC 51756]
gi|340783283|ref|YP_004749890.1| NADH-ubiquinone oxidoreductase subunit D [Acidithiobacillus caldus
SM-1]
gi|254970690|gb|EET28177.1| NADH-ubiquinone oxidoreductase chain D [Acidithiobacillus caldus
ATCC 51756]
gi|340557434|gb|AEK59188.1| NADH-ubiquinone oxidoreductase chain D [Acidithiobacillus caldus
SM-1]
Length = 417
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 191/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITRILNH++ +G +ALDVGAM+ F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRTLFDEITRILNHLLWLGAYALDVGAMSVFLYCFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPERMPQYEPSPYRDARRLAELNANRQGSVLDFIEDFTRRFPGYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A+ GF+G MLR SG+ WDLR+ +PY Y + +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERAIALGFTGPMLRASGVAWDLRRSEPYAAYADLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ + EMRQS RI+ Q ++ + G V DD KI+ P R MK
Sbjct: 274 KEGDCYDRYLVRVAEMRQSNRIIAQCVDWLRRNPGPVIVDDYKIAPPPRETMKTSMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VPPG Y AVEAPKGEFG+YLVSDG +KPYR KI+APGFAHLAA++++
Sbjct: 334 HHFKLFTEGMAVPPGEVYAAVEAPKGEFGIYLVSDGANKPYRMKIRAPGFAHLAAMDEMA 393
Query: 298 KGSFLADIVAII 309
+G +AD+VAI+
Sbjct: 394 RGHMIADVVAIL 405
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E+KTY Q LPY DRLDYVSMMCNE Y AVEKLL +E
Sbjct: 30 GEVIERADPHIGLLHRATEKLAEHKTYLQNLPYMDRLDYVSMMCNEHAYCRAVEKLLGVE 89
Query: 363 VPLRAKYIRVMF 374
+P+RA+YIR +F
Sbjct: 90 IPIRAQYIRTLF 101
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I N +NFGPQHP+AHGVL L E+
Sbjct: 3 EINNFTMNFGPQHPSAHGVLRLVLEL 28
>gi|28198174|ref|NP_778488.1| NADH dehydrogenase subunit D [Xylella fastidiosa Temecula1]
gi|182680808|ref|YP_001828968.1| NADH dehydrogenase subunit D [Xylella fastidiosa M23]
gi|386084329|ref|YP_006000611.1| NADH dehydrogenase subunit D [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|81725065|sp|Q87EQ2.1|NUOD_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|229891307|sp|B2I787.1|NUOD_XYLF2 RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|28056244|gb|AAO28137.1| NADH-ubiquinone oxidoreductase NQO4 subunit [Xylella fastidiosa
Temecula1]
gi|182630918|gb|ACB91694.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa M23]
gi|307579276|gb|ADN63245.1| NADH dehydrogenase subunit D [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 435
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 201/327 (61%), Gaps = 48/327 (14%)
Query: 31 IRNMVINFGPQHPA-AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMM 89
+R + G Q P A + +F EITRILNH+M +G++ALD+GAM + F ERE++M
Sbjct: 97 VRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLGAMAVMLYAFREREELM 156
Query: 90 EFYERASGARMHAAYVRPGGVALDIPI-------------------------GLLDDIYH 124
+ YE SGARMHAAY RPGGV D+P +LD + H
Sbjct: 157 DVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKESRWHKGKALKRLNAAREGSMLDFLEH 216
Query: 125 FISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQ 184
F TF R+DE E +LT+NR+W QRT VG++ + A +G +GVMLRGSGI WDLRK Q
Sbjct: 217 FTDTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTGVMLRGSGIAWDLRKKQ 276
Query: 185 PYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKIS 237
PY Y+ +FDIP+GT G+ + + EMR+S RI++Q + KM G+V ++ K++
Sbjct: 277 PYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCVQWLKMNPGQVMVENCKVA 336
Query: 238 TPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKI 282
P R MK GY VP G TY+AVEAPKGEFG YL+SDG +KP+R +
Sbjct: 337 PPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFGCYLISDGANKPFRVHL 396
Query: 283 KAPGFAHLAALEKIGKGSFLADIVAII 309
+APGFAHL++++ + +G LAD+VA+I
Sbjct: 397 RAPGFAHLSSMDAVVRGYMLADVVAMI 423
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 52/72 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKL E K + Q++ Y DRLDYVSMMCNE Y A+E L+ I+
Sbjct: 48 GETVVRADPHIGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVRAIETLIGIQ 107
Query: 363 VPLRAKYIRVMF 374
P RA+YIR MF
Sbjct: 108 APERAQYIRTMF 119
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 23 NLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
N +++IRN +NFGPQHPAAHGVL L E+
Sbjct: 14 NATESKQEIRNYTMNFGPQHPAAHGVLRLILEM 46
>gi|384086273|ref|ZP_09997448.1| NADH dehydrogenase subunit D [Acidithiobacillus thiooxidans ATCC
19377]
Length = 417
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/312 (45%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + LF EITR+LNH++ +G +ALDVGAM+ F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRTLFDEITRVLNHLLWLGAYALDVGAMSVFLYCFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPAQMPQYVASPYRDARRLDELNANRQGTVLDFIEDFTRRFPGYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V +E A+ GF+G MLR SG+ WDLR+ PY Y + +F+IP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVGSERAVQLGFTGPMLRASGVAWDLRRTHPYAAYADLDFEIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMKG------ 246
+ G+ ++ + EMRQS I+ Q +N + G V TDD K++ P R EMKG
Sbjct: 274 STGDCYDRYLVRVAEMRQSNHIIAQCVNWLRQNPGPVITDDFKVAAPPREEMKGSMEALI 333
Query: 247 ---------YPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
VP G YTAVEAPKGEFG+Y++SDG +KPYR KI+APGF+HLAA++++
Sbjct: 334 HHFKLFSEGMSVPAGEVYTAVEAPKGEFGIYMISDGANKPYRMKIRAPGFSHLAAMDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD+VAI+
Sbjct: 394 KGHMIADVVAIL 405
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q LPY DRLDYVSMMCNE Y LAVEKLL +E
Sbjct: 30 GEVIERADPHIGLLHRATEKLAENKTYLQNLPYMDRLDYVSMMCNEHAYCLAVEKLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIR +F
Sbjct: 90 VPRRAQYIRTLF 101
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I N +NFGPQHP+AHGVL L E+
Sbjct: 3 EINNFTMNFGPQHPSAHGVLRLVLEL 28
>gi|296446751|ref|ZP_06888690.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
gi|296255754|gb|EFH02842.1| NADH dehydrogenase I, D subunit [Methylosinus trichosporium OB3b]
Length = 396
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 184/289 (63%), Gaps = 24/289 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L+ EI R+L+H++ + T A D GA+TP W FEEREK+M FYERASGARMHA Y
Sbjct: 96 AQLIRVLYLEIGRLLSHLLNITTWASDCGALTPNLWGFEEREKLMGFYERASGARMHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P L+DDI F F LD++E +LT+NR++ R D+G V+ E+A
Sbjct: 156 FRVGGVHQDLPEALIDDIDDFCDRFPHVLDDIEALLTDNRIFKARNVDIGAVTLEEAWGL 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGV LR G WDLRK QPY+ YE +FDIP+G HG+ + ++E+RQS RI++Q
Sbjct: 216 GFSGVFLRACGAAWDLRKAQPYECYEEMDFDIPVGRHGDCYDRYCVRVEELRQSTRIMKQ 275
Query: 220 AINKMPGGE----VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEA 260
++ K+ G+ V KI+ P R MK G VP G Y AVEA
Sbjct: 276 SVTKLRAGDGKGPVAAQHPKITPPPREVMKRSMEATIEHFKLYTEGVHVPAGEVYVAVEA 335
Query: 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
PKGEFGVYLVS G KPYRCKI+ P +AHLAA E + +G LAD+ AII
Sbjct: 336 PKGEFGVYLVSRGGDKPYRCKIRPPSYAHLAATELLSRGHMLADVAAII 384
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 54/72 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPH+G LHRGTEKL+E KTY Q LPYFDRLDYV+ M E + LA E+LL +E
Sbjct: 32 GEIVRHADPHVGFLHRGTEKLLEDKTYLQGLPYFDRLDYVAPMNQEHGFCLAAERLLELE 91
Query: 363 VPLRAKYIRVMF 374
+P RA+ IRV++
Sbjct: 92 IPRRAQLIRVLY 103
>gi|171058188|ref|YP_001790537.1| NADH dehydrogenase subunit D [Leptothrix cholodnii SP-6]
gi|218534413|sp|B1Y830.1|NUOD_LEPCP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|170775633|gb|ACB33772.1| NADH dehydrogenase I, D subunit [Leptothrix cholodnii SP-6]
Length = 417
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+EITR+LNH++ +G H +D GAM + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFSEITRLLNHLLWLGCHGMDCGAMNMLIYCFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 FRPGGVYRDLPDVMPQYKVSKIRNAKAMARLNENRQGSLLDFIDDFTKRFPTLVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+++ E ALN G +G M+RGSGI WDLRK QPYD Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVLTPERALNLGLTGAMIRGSGIAWDLRKTQPYDVYDRMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQ--AINKMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ ++ ++EMRQS RI+EQ A + G V TD+ K++ PSR EMK
Sbjct: 274 VNGDTYDRYLVRVEEMRQSNRIIEQCSAWLRANPGPVITDNHKVAPPSRVEMKTSMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFG+Y +SDG +KPYR KI+APGFAHLAAL+++
Sbjct: 334 HHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFAHLAALDEMS 393
Query: 298 KGSFLADIVAII 309
+G +AD VAII
Sbjct: 394 RGHMIADAVAII 405
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E KT+ Q+LPY DRLDYVSMMCNE Y LA+EKL+ I+
Sbjct: 30 GEVIQRADPHIGLLHRGTEKLAESKTFIQSLPYMDRLDYVSMMCNEHAYCLAIEKLMGIQ 89
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRVMF+
Sbjct: 90 VPERAQYIRVMFS 102
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|149184635|ref|ZP_01862953.1| NADH-quinone oxidoreductase chain D [Erythrobacter sp. SD-21]
gi|148831955|gb|EDL50388.1| NADH-quinone oxidoreductase chain D [Erythrobacter sp. SD-21]
Length = 405
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 135/286 (47%), Positives = 189/286 (66%), Gaps = 21/286 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAE+TRI NH++ +G H +DVGAMTP W+FE RE + F+ER SGARMH AY
Sbjct: 108 AQYIRVLFAELTRICNHMLNIGAHVMDVGAMTPNLWVFELREDCLNFFERMSGARMHHAY 167
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARL-DEVEDMLTENRLWIQRTKDVGIVSAEDALN 163
+RPGGV D+P LL DI ++ T L + ++ +NR++ QR D+ +VS +DA+
Sbjct: 168 LRPGGVHQDVPEKLLVDIGEWLDTRLPELFGDAMSLVLDNRIFKQRNVDIAVVSKDDAVA 227
Query: 164 YGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVE 218
+GFSG M+R +G+ WDLRK QPYD Y+ EFDIP+GT+ + V+ +KE+ +S +I++
Sbjct: 228 WGFSGPMIRAAGVPWDLRKSQPYDVYDRMEFDIPVGTNSDCYDRFVVRVKEVYESAKIMK 287
Query: 219 QAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
Q + MP G + + D K+S P R+EMK G+ VP G Y A E+PKG
Sbjct: 288 QCLRDMPTGPIASYDRKVSPPKRAEMKQSMEALIHHFKLYTEGFHVPAGEVYVATESPKG 347
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVYLVSDG++KPYRCKI+ F+HL A++ + KG L D AI+
Sbjct: 348 EFGVYLVSDGSNKPYRCKIRPTAFSHLQAMDFMCKGHMLPDATAIL 393
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ +DPH+GLLHRGTEKLIE+KTY QALPYFDRLDY S + E Y LA+EKLLN+E
Sbjct: 44 GEIIERVDPHVGLLHRGTEKLIEHKTYLQALPYFDRLDYCSPLAQEYSYVLAIEKLLNVE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV+F
Sbjct: 104 VPERAQYIRVLFA 116
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
++ I N INFGPQHPAAHGVL + E+
Sbjct: 15 DETITNYTINFGPQHPAAHGVLRMVMEL 42
>gi|170733606|ref|YP_001765553.1| NADH dehydrogenase subunit D [Burkholderia cenocepacia MC0-3]
gi|229891270|sp|B1JVN8.1|NUOD_BURCC RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|169816848|gb|ACA91431.1| NADH dehydrogenase I, D subunit [Burkholderia cenocepacia MC0-3]
Length = 417
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 193/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDAMPQYKASKIRNEKALAKMNEARSGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G MLRGSGI WDLRK QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGLTGPMLRGSGIAWDLRKKQPYEVYDRMDFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS+ I +Q I K P G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSILIAKQCIEWLRKNP-GPVMTDNHKVAPPSRVGMKTNMEDL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLA+L+++
Sbjct: 333 IHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLASLDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|300311098|ref|YP_003775190.1| NADH dehydrogenase I subunit D [Herbaspirillum seropedicae SmR1]
gi|300073883|gb|ADJ63282.1| NADH dehydrogenase I (Chain D) oxidoreductase protein
[Herbaspirillum seropedicae SmR1]
Length = 417
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 190/312 (60%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G HALDVGAM + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGAHALDVGAMGVLLYAFREREDLFDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDSMPQYKASIVRNEKAIRELNENRQGSLLDFIEDFTNRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR VG+VS E AL GFSG MLRGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGVGVVSPERALQMGFSGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
+G+ ++ + EMRQS RI++Q + + G V TD+ KI+ P R++MK
Sbjct: 274 KNGDCYDRYLVRVAEMRQSNRIIKQCVEWLRNNPGPVITDNHKIAPPKRADMKSNMEDLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFGVYLVSDG +KPYR KI+APGFAHL AL ++
Sbjct: 334 HHFKLFTEGFRVPAGEAYAAVEHPKGEFGVYLVSDGANKPYRLKIRAPGFAHLQALNEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E KT+ Q++PY DRLDYVSMM NE Y LA+E++L I+
Sbjct: 30 GEVIQRADPHIGLLHRGTEKLAEQKTFLQSVPYMDRLDYVSMMSNEHGYVLAIERMLGID 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|124266599|ref|YP_001020603.1| NADH dehydrogenase subunit D [Methylibium petroleiphilum PM1]
gi|218534417|sp|A2SFM9.1|NUOD_METPP RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|124259374|gb|ABM94368.1| NADH dehydrogenase [Methylibium petroleiphilum PM1]
Length = 417
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/312 (46%), Positives = 191/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+EITRILNH++ +G H LD GAM + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFSEITRILNHLLWIGAHGLDCGAMNILIYAFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +D+ E +
Sbjct: 154 FRPGGVYRDLPDTMPQYRVSKIRNAKALAKMNENRQGSLLDFIEDFCRRFPKNVDDYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E ALN GF+G MLRGSGI WDLRK QPYD Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVTPERALNLGFTGPMLRGSGIAWDLRKTQPYDVYDRVDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++E+RQS RI++Q + G V TD+ K++ P R +MK
Sbjct: 274 AGGDCYDRYLVRVEELRQSNRIIQQCAAWLRANPGPVITDNHKVAAPGRVDMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGFAHLAA++++
Sbjct: 334 HHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFAHLAAMDEMS 393
Query: 298 KGSFLADIVAII 309
+G +AD VA+I
Sbjct: 394 RGHMIADAVAVI 405
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q+LPY DRLDYVSMMCNE Y LA+EKLL ++
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTYIQSLPYMDRLDYVSMMCNEHAYCLAIEKLLGVD 89
Query: 363 VPLRAKYIRVMFT 375
VP+RA+YIRVMF+
Sbjct: 90 VPVRAQYIRVMFS 102
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILEL 28
>gi|413000577|emb|CCO25577.1| NADH dehydrogenase subunit D [uncultured bacterium]
Length = 417
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/312 (47%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G HALDVGAMT F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWLGAHALDVGAMTVFLYAFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPDVMPQHKASMIRNEKAIRELNSNRQGSLLDFIEDFTRRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E A GF+G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERAKAMGFTGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
T+G+ ++ + EMR+S RI++Q + + G V +D+ K++ PSR MK
Sbjct: 274 TNGDCYDRYLVRVAEMRESNRIIKQCVEWLRNHPGPVISDNHKVAPPSRVNMKTNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VPPG Y AVE PKGEFG+YLVSDG +KPYR KI+APGF HL L+++
Sbjct: 334 HHFKLFTEGFHVPPGEAYAAVEHPKGEFGIYLVSDGANKPYRMKIRAPGFPHLQGLDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q++PY DRLDYVSMM NE Y +A+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTYLQSVPYMDRLDYVSMMSNEHAYVMAIERLLGVE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|300691028|ref|YP_003752023.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
PSI07]
gi|299078088|emb|CBJ50731.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
PSI07]
gi|344169639|emb|CCA81998.1| NADH-ubiquinone oxidoreductase subunit D [blood disease bacterium
R229]
gi|344171811|emb|CCA84433.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia syzygii R24]
Length = 417
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRI+NH+M +G+HALDVGAM F + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRIMNHLMWIGSHALDVGAMAVFLYAFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPDSMPQYKASKVRNEKALAALNETRSGSLLDFIEAFTDRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL GF+G MLRGSGI+WD+RK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQKGFTGPMLRGSGIEWDVRKKQPYEVYDRVDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ ++ ++EMRQS RIV Q + + G V TD+ K++ PSR +MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSNRIVRQCVEWLRKNQGPVITDNHKVAPPSRVDMKTNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y AVE PKGEFG+Y++SDG +KPYR KI+APGF HLAAL+++
Sbjct: 334 HHFKLFTEGMHVPEGEAYAAVEHPKGEFGIYVISDGANKPYRLKIRAPGFVHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q +PY DRLDYVSMM NE Y +A+E+LL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQNVPYMDRLDYVSMMVNEHAYVMAIERLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|145589231|ref|YP_001155828.1| NADH dehydrogenase subunit D [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|229891296|sp|A4SXQ0.1|NUOD_POLSQ RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|145047637|gb|ABP34264.1| NADH dehydrogenase subunit D [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 417
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/312 (45%), Positives = 194/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F E+TR+LNH++ +G H LDVGAM F + F +RE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDELTRLLNHLLWIGCHGLDVGAMAVFLYAFRDREDIFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F A +DE ++
Sbjct: 154 YRPGGVYRDLPDQMAQYSKSKIRSASAIKRLNENRSGTLLDFIDQFTNGFDANVDEYCNL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR ++GIV+ E AL GF+G MLRGSGI+WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVNIGIVTPERALQLGFTGPMLRGSGIEWDLRKKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ ++ M+EMRQS RI++Q + K G V +D+ K+S P R +MK
Sbjct: 274 VNGDSYDRYLVRMEEMRQSNRIIKQCVAWLKANSGPVMSDNHKVSPPKRVDMKTNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y+AVE PKGEFG+YL+SDG +KPYR KI+APGF HL+A++++
Sbjct: 334 HHFKLFTEGMHVPNGEAYSAVEHPKGEFGIYLISDGANKPYRMKIRAPGFVHLSAMDEMS 393
Query: 298 KGSFLADIVAII 309
+G LAD V II
Sbjct: 394 RGHMLADAVTII 405
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E +T+ Q +PY DRLDYVSMM NE Y LA+EKLL ++
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETRTWIQNVPYMDRLDYVSMMSNEHAYVLAIEKLLQVD 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 KIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|300703645|ref|YP_003745247.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
CFBP2957]
gi|299071308|emb|CBJ42626.1| NADH-ubiquinone oxidoreductase subunit D [Ralstonia solanacearum
CFBP2957]
Length = 417
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 192/313 (61%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRI+NH+M +G HALDVGAM F + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRIMNHLMWIGAHALDVGAMAVFLYAFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPKFKASKVRNEKALAALNETRSGSLLDFIEAFTDRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+V+ E AL G +G MLRGSGI WD+RK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVTPERALQKGLTGPMLRGSGIAWDVRKKQPYEVYDRVDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN---KMPGGEVRTDDMKISTPSRSEMK------ 245
HG+ ++ ++EMRQS RIV Q I+ K P G V TD+ K++ PSR +MK
Sbjct: 274 VHGDSYDRYLVRVEEMRQSNRIVRQCIDWLRKNP-GPVITDNHKVAPPSRVDMKTNMEEL 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G VP G Y AVE PKGEFG+Y++SDG +KPYR KI+APGFAHLAAL+++
Sbjct: 333 IHHFKLFTEGMHVPEGEAYAAVEHPKGEFGIYVISDGANKPYRLKIRAPGFAHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
+G +AD V II
Sbjct: 393 ARGHMIADAVTII 405
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQSVPYMDRLDYVSMMVNEHAYVMAIERLLGVE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|417557697|ref|ZP_12208718.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Xylella fastidiosa
EB92.1]
gi|338179725|gb|EGO82650.1| NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Xylella fastidiosa
EB92.1]
Length = 409
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 201/327 (61%), Gaps = 48/327 (14%)
Query: 31 IRNMVINFGPQHPA-AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMM 89
+R + G Q P A + +F EITRILNH+M +G++ALD+GAM + F ERE++M
Sbjct: 71 VRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLGAMAVMLYAFREREELM 130
Query: 90 EFYERASGARMHAAYVRPGGVALDIPI-------------------------GLLDDIYH 124
+ YE SGARMHAAY RPGGV D+P +LD + H
Sbjct: 131 DVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKESRWHKGKALKRLNAAREGSMLDFLEH 190
Query: 125 FISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQ 184
F TF R+DE E +LT+NR+W QRT VG++ + A +G +GVMLRGSGI WDLRK Q
Sbjct: 191 FTDTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTGVMLRGSGIAWDLRKKQ 250
Query: 185 PYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKIS 237
PY Y+ +FDIP+GT G+ + + EMR+S RI++Q + KM G+V ++ K++
Sbjct: 251 PYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCVQWLKMNPGQVMVENCKVA 310
Query: 238 TPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKI 282
P R MK GY VP G TY+AVEAPKGEFG YL+SDG +KP+R +
Sbjct: 311 PPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFGCYLISDGANKPFRVHL 370
Query: 283 KAPGFAHLAALEKIGKGSFLADIVAII 309
+APGFAHL++++ + +G LAD+VA+I
Sbjct: 371 RAPGFAHLSSMDAVVRGYMLADVVAMI 397
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 52/72 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKL E K + Q++ Y DRLDYVSMMCNE Y A+E L+ I+
Sbjct: 22 GETVVRADPHIGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVRAIETLIGIQ 81
Query: 363 VPLRAKYIRVMF 374
P RA+YIR MF
Sbjct: 82 APERAQYIRTMF 93
>gi|415950781|ref|ZP_11557001.1| NADH-quinone oxidoreductase subunit D [Herbaspirillum frisingense
GSF30]
gi|407757587|gb|EKF67542.1| NADH-quinone oxidoreductase subunit D [Herbaspirillum frisingense
GSF30]
Length = 417
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 190/312 (60%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G HALDVGAM + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGAHALDVGAMGVLLYAFREREDLFDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDSMPQYKASIVRNEKAIRELNENRQGSLLDFIEDFTNRFPTYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR VG+VS E AL GFSG MLRGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGVGVVSPERALQMGFSGPMLRGSGIAWDLRKKQPYEVYDLMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAINKMPG--GEVRTDDMKISTPSRSEMK------- 245
+G+ ++ + EMRQS RI++Q + + G V TD+ KI+ P R++MK
Sbjct: 274 KNGDCYDRYLVRVAEMRQSNRIIKQCVEWLRNNPGPVITDNHKIAPPKRADMKSNMEDLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFGVYLVSDG +KPYR KI+APGFAHL AL ++
Sbjct: 334 HHFKLFTEGFRVPAGEAYAAVEHPKGEFGVYLVSDGANKPYRLKIRAPGFAHLQALNEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 59/72 (81%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKL E KT+ Q++PY DRLDYVSMM NE Y LA+E+LL +E
Sbjct: 30 GEVIQRADPHIGLLHRGTEKLAEQKTFLQSVPYMDRLDYVSMMSNEHGYVLAIERLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|374365454|ref|ZP_09623544.1| NADH dehydrogenase subunit D [Cupriavidus basilensis OR16]
gi|373103027|gb|EHP44058.1| NADH dehydrogenase subunit D [Cupriavidus basilensis OR16]
Length = 417
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M +G+HALDVGAM F + F ERE M + YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMWIGSHALDVGAMAVFLYAFREREDMFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPDTMPQYKASKIHNERAIKAMNEARSGSLLDFIEDFTNRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL GF+G MLRGSGI+WDLRK QPY+ Y+ +F +P+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQMGFTGPMLRGSGIEWDLRKKQPYEVYDRMDFQVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQS I++Q I+ + G V +D+ K++ PSR +MK
Sbjct: 274 VGGDCYSRYLVRVEEMRQSNNIIKQCIDWLRRNPGPVMSDNHKVAPPSRVDMKSNMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G TY AVE PKGEFG+Y +SDG +KPYR KI+APGFAHLAAL+++
Sbjct: 334 HHFKLFTEGIHVPEGETYAAVEHPKGEFGIYAISDGANKPYRLKIRAPGFAHLAALDEMA 393
Query: 298 KGSFLADIVAII 309
KG +AD V II
Sbjct: 394 KGHMIADAVTII 405
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y +A+EK+L +E
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEQKTWIQSVPYMDRLDYVSMMVNEHAYVMAIEKMLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
I+N +NFGPQHPAAHGVL L E+
Sbjct: 4 IKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|344207464|ref|YP_004792605.1| NAD(P)H-quinone oxidoreductase subunit H [Stenotrophomonas
maltophilia JV3]
gi|343778826|gb|AEM51379.1| NAD(P)H-quinone oxidoreductase subunit H [Stenotrophomonas
maltophilia JV3]
Length = 436
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRILNH+M +GT ALD+GAM + F ERE++M+ YE SGARMHA Y
Sbjct: 113 AQYIRTMFDEITRILNHLMNIGTGALDLGAMAVMLYAFREREELMDCYEAVSGARMHATY 172
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I +F F R+DE E +
Sbjct: 173 YRPGGVYRDLPEQMPKYKESRWKTGKQLRRLNAAREGSLLDFIENFTREFPNRIDEYETL 232
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS + A+++G +GVMLRGSG+ WDLRK +PY Y+ +FDIP+G
Sbjct: 233 LTDNRIWKQRTVGIGVVSPQQAMDWGMTGVMLRGSGVAWDLRKKRPYAKYDAVDFDIPVG 292
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
T G+ + + EMRQS RI+ Q + + G V + K++ PSR EMK
Sbjct: 293 TAGDCYDRYLCRVAEMRQSNRIIRQCVAWLRANPGPVMVHNFKVAPPSRQEMKSDMEALI 352
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G TY AVEAPKGEFG YL+SDG +KP+R ++APGFAHL++L++I
Sbjct: 353 HHFKLFSEGYQVPAGETYAAVEAPKGEFGCYLISDGANKPFRVHLRAPGFAHLSSLDEIV 412
Query: 298 KGSFLADIVAII 309
+G LAD+VA+I
Sbjct: 413 RGHMLADVVAMI 424
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 53/72 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPH+GLLHRGTEKL E K + Q++ Y DRLDYVSMMCNE Y A+E LL IE
Sbjct: 49 GETVVRADPHVGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHGYVRAIETLLGIE 108
Query: 363 VPLRAKYIRVMF 374
P+RA+YIR MF
Sbjct: 109 APIRAQYIRTMF 120
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +IRN V+N GPQHPAAHGVL L E+
Sbjct: 20 DTEIRNYVMNLGPQHPAAHGVLRLVLEM 47
>gi|389871767|ref|YP_006379186.1| NADH dehydrogenase subunit D [Advenella kashmirensis WT001]
gi|388537016|gb|AFK62204.1| NADH dehydrogenase subunit D [Advenella kashmirensis WT001]
Length = 418
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/313 (46%), Positives = 191/313 (61%), Gaps = 48/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITR+LNH+M+VGTH LDVGAM + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVMFDEITRLLNHLMSVGTHGLDVGAMAAMLYAFREREDLMDCYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPI--------------------------GLLDDIYHFISTFSARLDEVED 138
RPGGV D+P LLD I F F +DE E
Sbjct: 154 YRPGGVYRDLPDSMPQHKMDSKYRSKREIKQFNENRDGSLLDFIEAFTERFPKCVDEYET 213
Query: 139 MLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPI 198
+LT+NR+W QR +G+V + A+ GF+G MLRGSGI WDLR++QPY+ Y+ EFDIP+
Sbjct: 214 LLTDNRIWKQRLVGIGVVDPDRAMALGFTGPMLRGSGISWDLRRMQPYEVYDRLEFDIPV 273
Query: 199 GTHGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------ 245
GT+G+ ++ + EMR+S RI+ Q ++ + G V D+ KI+ P R+ MK
Sbjct: 274 GTNGDCYDRYLVRIAEMRESNRIISQCVHWLRNNPGPVINDNHKITPPKRTSMKSNMEEL 333
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G+PVP G Y+AVE PKGEFG+YLVSDG +KPYR KI+ PGF HL +L+++
Sbjct: 334 IHHFKLFTEGFPVPAGEVYSAVEHPKGEFGIYLVSDGANKPYRLKIRPPGFVHLQSLDEM 393
Query: 297 GKGSFLADIVAII 309
+G LAD V II
Sbjct: 394 SRGHMLADAVTII 406
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E+KTY QALPY DRLDYVSMMCNE Y +A+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAEHKTYLQALPYMDRLDYVSMMCNEHAYVMAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRVMF
Sbjct: 90 VPLRAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEIT 56
+I+N +NFGPQHPAAHGVL L E++
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLILELS 29
>gi|30249734|ref|NP_841804.1| NADH dehydrogenase subunit D [Nitrosomonas europaea ATCC 19718]
gi|75540324|sp|Q82TU6.1|NUOD_NITEU RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|30180771|emb|CAD85685.1| NADH-ubiquinone oxidoreductase 49Kd chain [Nitrosomonas europaea
ATCC 19718]
Length = 417
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/313 (47%), Positives = 196/313 (62%), Gaps = 49/313 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +G HALDVGAMT F + F ERE +M+ YE SGAR+HAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLWLGAHALDVGAMTVFLYAFREREDLMDCYEAVSGARLHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +D+ E +
Sbjct: 154 YRPGGVYRDLPDNMPQYQPSAIHDEKATRARNENRQGSLLDFIEDFTRRFPGYIDDYEAL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR D+G+VS + A GF+G MLRGSG++WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVDIGVVSPDRAKALGFTGPMLRGSGVEWDLRKKQPYEVYDQVDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAI---NKMPGGEVRTDDMKISTPSRSEMK------ 245
+G+ ++ ++EMRQS I++Q + K P G V TD+ K++ PSR MK
Sbjct: 274 ANGDCYDRYLVRIEEMRQSNHIIKQCVEWLRKNP-GPVITDNHKVAPPSRLAMKQNMEEM 332
Query: 246 ---------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKI 296
G VP G Y AVE PKGEFG+Y+VSDG +KPYR KI+APGFAHLAAL+++
Sbjct: 333 IHHFKLFTEGMHVPRGEAYAAVEHPKGEFGIYIVSDGANKPYRLKIRAPGFAHLAALDEM 392
Query: 297 GKGSFLADIVAII 309
KG +AD+VAII
Sbjct: 393 TKGHMIADLVAII 405
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q++PY DRLDYVSMM NE Y +A+EKLL IE
Sbjct: 30 GEVIRRADPHIGLLHRATEKLAENKTYVQSVPYMDRLDYVSMMVNEHAYVMAIEKLLQIE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTMNFGPQHPAAHGVLRLVMEL 28
>gi|374341112|gb|AEZ35013.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Phyllocladus
aspleniifolius]
gi|374341114|gb|AEZ35014.1| NADH dehydrogenase subunit 7, partial (mitochondrion) [Phyllocladus
trichomanoides]
Length = 249
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 131/239 (54%), Positives = 168/239 (70%), Gaps = 20/239 (8%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH+ A THA+DVGA+TPF W FEEREK++EFYER SGARMHA+Y
Sbjct: 11 AQYIRVLFREITRIPNHLPASTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASY 70
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DIY F F++R+DE E+MLT NR+ QR D+G V+A+ A ++
Sbjct: 71 IRPGGVAQDLPLGLCRDIYDFTQQFASRIDESEEMLTGNRIRKQRLVDIGTVTAQQAKDW 130
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM RGSG+ WDLRK PYD Y+ + D+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 131 GFSGVMPRGSGVCWDLRKAAPYDAYDQLDSDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQ 190
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
+N+MP G V+ DD K PSR +MK G+ VP +T+TAVEAPKG
Sbjct: 191 RLNRMPSGTVKADDRKPCPPSRCQMKLSTESSIHHPEPHTEGFSVPASSTHTAVEAPKG 249
>gi|86137597|ref|ZP_01056174.1| NADH dehydrogenase delta subunit [Roseobacter sp. MED193]
gi|85825932|gb|EAQ46130.1| NADH dehydrogenase delta subunit [Roseobacter sp. MED193]
Length = 404
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 199/284 (70%), Gaps = 23/284 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RILNH++ V T A+DVGA+TP W FEEREK+M FYERA GAR+HAAY RP
Sbjct: 110 IRVLYSEIGRILNHLLNVTTQAMDVGALTPPLWGFEEREKLMVFYERACGARLHAAYFRP 169
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV DIP LLDDI + F L +++ +LTENR++ QR D+G+V+ ++ L++GFS
Sbjct: 170 GGVHQDIPDDLLDDIDLWALEFPKVLADIDGLLTENRIFKQRNCDIGVVTEQEILDWGFS 229
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IP+G +G+ ++ M+EMRQSL I+ QAI
Sbjct: 230 GVMVRGSGMAWDLRRAQPYECYDEFDFQIPVGKNGDCYDRYLVRMEEMRQSLSIIRQAIA 289
Query: 223 KM--PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G+V K++ P R +MK G+ VP G Y AVEAPKGEF
Sbjct: 290 KLREATGDVLARG-KLTPPKRGDMKTSMESLIHHFKLYTEGFHVPAGEVYAAVEAPKGEF 348
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLV+DG++KPYR KI+APGF HL A++ + KG LAD+ AII
Sbjct: 349 GVYLVADGSNKPYRSKIRAPGFLHLQAMDHVAKGHQLADVAAII 392
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 43 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 102
Query: 363 VPLRAKYIRVMFT 375
VP R IRV+++
Sbjct: 103 VPRRGSLIRVLYS 115
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 22 DNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
D+ E++IRN INFGPQHPAAHGVL L E+
Sbjct: 8 DDAQTGEQKIRNFNINFGPQHPAAHGVLRLVLEL 41
>gi|337280288|ref|YP_004619760.1| NADH:ubiquinone oxidoreductase subunit 4 or 49 kDa subunit, chain D
[Ramlibacter tataouinensis TTB310]
gi|334731365|gb|AEG93741.1| Candidate NADH:ubiquinone oxidoreductase subunit 4 or 49 kDa
subunit, chain D [Ramlibacter tataouinensis TTB310]
Length = 417
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 145/312 (46%), Positives = 191/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITR+LNH++ +G H LD GAM + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFAEITRLLNHLLWLGAHGLDCGAMNMLIYCFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 FRPGGVYRDLPDSMPQYQASKVRNERAIRQLNENRSGTLLDFIDDFARRFPKYVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E ALN GF+G MLRGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVAPERALNLGFTGPMLRGSGIAWDLRKKQPYEVYDKMDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMR+S RI+ Q + + G V TD+ K++ P R MK
Sbjct: 274 ATGDCYDRYLVRVQEMRESNRIIRQCVAWLRANPGPVITDNHKVAPPDRESMKANMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFG+Y+VSDG +KPYR KI+APGFAHLA+L+++G
Sbjct: 334 HHFKLFSEGFRVPEGEAYAAVEHPKGEFGIYIVSDGANKPYRLKIRAPGFAHLASLDEMG 393
Query: 298 KGSFLADIVAII 309
+G +AD VAII
Sbjct: 394 RGHMIADAVAII 405
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KTY Q+LPY DRLDYVSMMCNE Y LA+EK++ IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAETKTYIQSLPYMDRLDYVSMMCNEHAYCLAIEKMMGIE 89
Query: 363 VPLRAKYIRVMFT 375
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMFA 102
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|325915542|ref|ZP_08177853.1| NADH dehydrogenase subunit D [Xanthomonas vesicatoria ATCC 35937]
gi|325538258|gb|EGD09943.1| NADH dehydrogenase subunit D [Xanthomonas vesicatoria ATCC 35937]
Length = 435
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 146/312 (46%), Positives = 198/312 (63%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +F EITRI NH+M VG++ALD+GAM + F ERE++M+ YE SGARMHAAY
Sbjct: 112 AQYIRTMFDEITRIKNHLMWVGSNALDLGAMAVMLYAFREREELMDVYEAVSGARMHAAY 171
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD + F +TF AR+DE E +
Sbjct: 172 YRPGGVYRDLPDRMPQYKESRWHKGGALKKRNAGREGTLLDFLEEFTNTFPARVDEYETL 231
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT DVGI+S + A +G +G MLRGSGI+WDLRK QPY Y++ +FDIP+G
Sbjct: 232 LTDNRIWKQRTVDVGIISPDLARAWGMTGPMLRGSGIEWDLRKKQPYAKYDSVDFDIPVG 291
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
T+G+ ++ + EMR+S RI++Q + K G V + K++ PSR MK
Sbjct: 292 TNGDCYDRYLVRVAEMRESNRIIKQCVKWLKANPGPVMVTNFKVAPPSREGMKDDMEALI 351
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY VP G TY+AVEAPKGEFG YL+SDG +KP+R ++APGFAHL++++ +
Sbjct: 352 HHFKLFSEGYCVPAGETYSAVEAPKGEFGCYLMSDGANKPFRVHLRAPGFAHLSSMDAVV 411
Query: 298 KGSFLADIVAII 309
+G LAD+VA+I
Sbjct: 412 RGYLLADVVAMI 423
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 53/72 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKL E K + Q++PY DRLDYVSMMCNE Y A+E L+ IE
Sbjct: 48 GETVVRADPHIGLLHRGTEKLAESKPFNQSVPYMDRLDYVSMMCNEHAYVRAIESLMGIE 107
Query: 363 VPLRAKYIRVMF 374
P RA+YIR MF
Sbjct: 108 APERAQYIRTMF 119
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 23 NLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
N V +++IRN +NFGPQHPAAHGVL L E+
Sbjct: 14 NPVESKQEIRNYTMNFGPQHPAAHGVLRLILEM 46
>gi|83721170|ref|YP_441617.1| NADH dehydrogenase subunit D [Burkholderia thailandensis E264]
gi|167580425|ref|ZP_02373299.1| NADH dehydrogenase subunit D [Burkholderia thailandensis TXDOH]
gi|167618534|ref|ZP_02387165.1| NADH dehydrogenase subunit D [Burkholderia thailandensis Bt4]
gi|257139687|ref|ZP_05587949.1| NADH dehydrogenase subunit D [Burkholderia thailandensis E264]
gi|123537636|sp|Q2SZN2.1|NUOD_BURTA RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|83654995|gb|ABC39058.1| NADH dehydrogenase I, D subunit [Burkholderia thailandensis E264]
Length = 417
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 192/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITR+LNH+M +G HALDVGAM F + F ERE +M+ YE SGARMHAAY
Sbjct: 94 AQYIRVLFDEITRVLNHLMWIGAHALDVGAMAVFLYAFREREDLMDVYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIGL-------------------------LDDIYHFISTFSARLDEVEDM 139
RPGGV D+P + LD I F + F +DE E +
Sbjct: 154 YRPGGVYRDLPEAMPQYKASKIRNERALAKMNEARSGSVLDFIDDFFTRFPKCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QR +G+VS E AL G +G M+RGSGI WDLRK QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRLVGIGVVSPERALQLGLTGPMIRGSGIAWDLRKKQPYEVYDRIDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ ++ ++EMRQS RI +Q I + G V TD+ K++ PSR MK
Sbjct: 274 VNGDCYDRYLVRVEEMRQSTRIAKQCIEWLRENPGPVITDNHKVAPPSRVGMKTNMEDLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APG+AHL+AL+++
Sbjct: 334 HHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGYAHLSALDEMA 393
Query: 298 KGSFLADIVAII 309
+G +AD V II
Sbjct: 394 RGHMIADAVTII 405
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E KT+ Q++PY DRLDYVSMM NE Y LA+EKLL IE
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESKTFIQSVPYMDRLDYVSMMVNEHGYVLAIEKLLGIE 89
Query: 363 VPLRAKYIRVMF 374
VP RA+YIRV+F
Sbjct: 90 VPERAQYIRVLF 101
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|407893635|ref|ZP_11152665.1| NADH dehydrogenase subunit D [Diplorickettsia massiliensis 20B]
Length = 572
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 196/326 (60%), Gaps = 47/326 (14%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF E+TRILNH++ +G HALD+GAMT F + F ERE +++ YE SG+RMHA Y
Sbjct: 94 AQYIRVLFDEVTRILNHLLWLGAHALDIGAMTVFLYCFREREDLIDCYEAVSGSRMHATY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P GLLD + F + F +DE E++
Sbjct: 154 YRPGGVYRDLPNKMPQYKVSKWHNKKDVQKMNANREGGLLDFLTDFANRFPQCIDEYENL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+++ E A+ G +G +LRGSG+ WDLRK QPY+ Y+ +FDIPIG
Sbjct: 214 LTDNRIWKQRTVGIGVLTPERAVQLGCTGPILRGSGVAWDLRKKQPYEVYDQLDFDIPIG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
G+ +I ++EMRQS RI++Q I + G V D KI+ P+R EMK
Sbjct: 274 RQGDCYDRYLIRVEEMRQSTRIIQQCIAWLRQHPGPVMITDHKIAPPNRVEMKEDMESLI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
GY PPG Y A+E PKGEFG+YLVSDG +KPYR KI+A GF HLAAL ++
Sbjct: 334 HHFKLFTEGYCTPPGEAYAAIEHPKGEFGIYLVSDGANKPYRVKIRAAGFPHLAALNELV 393
Query: 298 KGSFLADIVAIIDPHIGLLHRGTEKL 323
G +AD+VAI+ I TE L
Sbjct: 394 SGHMIADLVAILSSLITPADLLTESL 419
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 54/72 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E K Y Q++ Y DRLDYVSMMCNE Y LA+EKLL I
Sbjct: 30 GEVIQSADPHIGLLHRATEKLAESKPYNQSIGYMDRLDYVSMMCNEHAYVLAIEKLLGIT 89
Query: 363 VPLRAKYIRVMF 374
P RA+YIRV+F
Sbjct: 90 PPQRAQYIRVLF 101
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHPAAHGVL L E+
Sbjct: 3 EIRNYTLNFGPQHPAAHGVLRLILEL 28
>gi|350562011|ref|ZP_08930848.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349780329|gb|EGZ34664.1| NADH dehydrogenase I, D subunit [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 417
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/312 (45%), Positives = 194/312 (62%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +G HALD+GAMT F + F ERE +M+ YE SGAR+HA Y
Sbjct: 94 AQYIRVMFDEITRILNHLLWLGAHALDIGAMTVFLYAFREREDLMDCYEAVSGARLHATY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGVA D+P +LD I F F +DE E +
Sbjct: 154 YRPGGVARDLPDAMPKYQPSRWKTQAEVDALNANRQGSMLDFIESFTERFPGCVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A G +G MLRGSG++WDLR+ QPY+ Y+ +FDIP+G
Sbjct: 214 LTDNRIWKQRTVGIGVVSPERAKQLGLTGPMLRGSGVEWDLRRKQPYEVYDRLDFDIPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ ++ ++EMRQS RI+ Q I+ + G V ++ K++ P R EMK
Sbjct: 274 VNGDCYDRYLVRIEEMRQSNRIIRQCIDWLRANPGPVLLENYKVAPPRREEMKADMEALI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ +P G Y AVE PKGEFGVYLVSDG +KPYR K++APGF HL+AL+++
Sbjct: 334 HHFKLFTEGFCLPEGEVYAAVEHPKGEFGVYLVSDGANKPYRLKVRAPGFVHLSALDEMA 393
Query: 298 KGSFLADIVAII 309
+G LAD+VAII
Sbjct: 394 RGHMLADVVAII 405
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 57/72 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E K Y Q++ Y DRLDYVSMMCNE Y LA+EKLL IE
Sbjct: 30 GEVVQRADPHIGLLHRGTEKLAESKPYNQSIGYMDRLDYVSMMCNEHGYVLAMEKLLEIE 89
Query: 363 VPLRAKYIRVMF 374
PLRA+YIRVMF
Sbjct: 90 APLRAQYIRVMF 101
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN +NFGPQHP+AHGVL L E+
Sbjct: 3 EIRNFTLNFGPQHPSAHGVLRLVLEM 28
>gi|319794665|ref|YP_004156305.1| NADH dehydrogenase i, d subunit [Variovorax paradoxus EPS]
gi|315597128|gb|ADU38194.1| NADH dehydrogenase I, D subunit [Variovorax paradoxus EPS]
Length = 417
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 144/312 (46%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++FAEITR+LNH++ +G H LD GAM + F ERE + + YE SGARMHAAY
Sbjct: 94 AQYIRVMFAEITRLLNHLLWLGAHGLDCGAMNMLIYCFREREDLFDMYEAVSGARMHAAY 153
Query: 105 VRPGGVALDIPIG-------------------------LLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P LLD I F F +DE E +
Sbjct: 154 FRPGGVYRDLPDAMPQYKVSKIKNAKAIERLNENRQGSLLDFIDDFCKRFPKMVDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+V+ E ALN GF+G MLRGSGI+WDLRK QPYD Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRTVGIGVVTPERALNLGFTGPMLRGSGIEWDLRKKQPYDVYDQMQFDVPVG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQ--AINKMPGGEVRTDDMKISTPSRSEMK------- 245
G+ ++ ++EMRQ+ +I++Q A ++ G V TD+ K++ P+R MK
Sbjct: 274 KTGDCYDRYLVRVEEMRQANKIIQQCSAWLRVNPGPVITDNHKVAAPARESMKANMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G+ VP G Y AVE PKGEFG+YLVSDG +KPYR KI+APGF HLAAL+++
Sbjct: 334 HHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDGANKPYRLKIRAPGFPHLAALDEMS 393
Query: 298 KGSFLADIVAII 309
+G +AD VA+I
Sbjct: 394 RGHMIADAVAVI 405
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHR TEKL E +T+ Q+LPY DRLDYVSMM NE Y LA+E+++ ++
Sbjct: 30 GEVIQRADPHIGLLHRATEKLAESRTFIQSLPYMDRLDYVSMMSNEHAYCLAIERMMGLD 89
Query: 363 VPLRAKYIRVMFT 375
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMFA 102
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 3 EIKNYTLNFGPQHPAAHGVLRLVLEL 28
>gi|358638065|dbj|BAL25362.1| NADH dehydrogenase subunit D [Azoarcus sp. KH32C]
Length = 417
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/312 (45%), Positives = 193/312 (61%), Gaps = 47/312 (15%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EITRILNH++ +GTHALD+GAMT + F ERE +++ YE SGAR+HAAY
Sbjct: 94 AQYIRVMFDEITRILNHLLGIGTHALDIGAMTMVLYTFREREDLLDVYEAVSGARLHAAY 153
Query: 105 VRPGGVALDIPI-------------------------GLLDDIYHFISTFSARLDEVEDM 139
RPGGV D+P +LD + F + F DE E +
Sbjct: 154 YRPGGVYRDLPDRMPQYQVNKFKNAKTVQELNESRQGSMLDFLEDFTNRFDGYCDEYETL 213
Query: 140 LTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIG 199
LT+NR+W QRT +G+VS E A GF+GVMLRGSG+ WDLR+ QPY+ Y+ +FD+P+G
Sbjct: 214 LTDNRIWKQRTVGIGVVSPEQAKALGFTGVMLRGSGVAWDLRRKQPYEVYDQVDFDVPLG 273
Query: 200 THGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKISTPSRSEMK------- 245
+G+ + M+EMRQS RI++Q I + G V D+ K++ P R MK
Sbjct: 274 KNGDCYDRYLCRMEEMRQSNRIIKQCIAWLRANPGPVIADNHKVAPPPRERMKANMEELI 333
Query: 246 --------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIG 297
G VP G Y+AVE PKGEFGVY VSDG +KPYR K++APGFAHLAA++++
Sbjct: 334 HHFKLFTEGMHVPKGEVYSAVEHPKGEFGVYAVSDGANKPYRLKLRAPGFAHLAAMDEMA 393
Query: 298 KGSFLADIVAII 309
+G +AD+VAII
Sbjct: 394 RGHMIADVVAII 405
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKL E +T+ Q++PY DRLDYVSMMCNE Y +A+EKLL +E
Sbjct: 30 GEVVERADPHIGLLHRGTEKLAETRTWIQSVPYMDRLDYVSMMCNEHAYCMAIEKLLGLE 89
Query: 363 VPLRAKYIRVMF 374
VP+RA+YIRVMF
Sbjct: 90 VPIRAQYIRVMF 101
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+IRN INFGPQHP+AHGVL L E+
Sbjct: 3 EIRNYTINFGPQHPSAHGVLRLVLEL 28
>gi|71275687|ref|ZP_00651972.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Dixon]
gi|170729492|ref|YP_001774925.1| NADH dehydrogenase subunit D [Xylella fastidiosa M12]
gi|229891308|sp|B0U1W8.1|NUOD_XYLFM RecName: Full=NADH-quinone oxidoreductase subunit D; AltName:
Full=NADH dehydrogenase I subunit D; AltName: Full=NDH-1
subunit D
gi|71163578|gb|EAO13295.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Dixon]
gi|71732412|gb|EAO34466.1| NADH dehydrogenase I, D subunit [Xylella fastidiosa Ann-1]
gi|167964285|gb|ACA11295.1| NADH dehydrogenase [Xylella fastidiosa M12]
Length = 435
Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 201/327 (61%), Gaps = 48/327 (14%)
Query: 31 IRNMVINFGPQHPA-AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMM 89
+R + G Q P A + +F EITRILNH+M +G++ALD+GAM + F ERE++M
Sbjct: 97 VRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLGAMAVMLYAFREREELM 156
Query: 90 EFYERASGARMHAAYVRPGGVALDIPI-------------------------GLLDDIYH 124
+ YE SGARMHAAY RPGGV D+P +LD + H
Sbjct: 157 DVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKQSRWHKGKALKRLNAAREGSMLDFLEH 216
Query: 125 FISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQ 184
F TF R+DE E +LT+NR+W QRT VG++ + A +G +GVMLRGSGI WDLRK Q
Sbjct: 217 FTDTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTGVMLRGSGIAWDLRKKQ 276
Query: 185 PYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN--KMPGGEVRTDDMKIS 237
PY Y+ +FDIP+GT G+ + + EMR+S RI++Q + K+ G+V ++ K++
Sbjct: 277 PYAKYDAVDFDIPLGTCGDCYDRYLCRVAEMRESNRIIKQCVQWLKVNPGQVMVENFKVA 336
Query: 238 TPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKI 282
P R MK GY VP G TY+AVEAPKGEFG YL+SDG +KP+R +
Sbjct: 337 PPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFGCYLISDGANKPFRVHL 396
Query: 283 KAPGFAHLAALEKIGKGSFLADIVAII 309
+APGFAHL++++ + +G LAD+VA+I
Sbjct: 397 RAPGFAHLSSMDAVVRGYMLADVVAMI 423
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 52/72 (72%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V DPHIGLLHRGTEKL E K + Q++ Y DRLDYVSMMCNE Y A+E L+ I+
Sbjct: 48 GETVVRADPHIGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVRAIETLIGIQ 107
Query: 363 VPLRAKYIRVMF 374
P RA+YIR MF
Sbjct: 108 APERAQYIRTMF 119
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 23 NLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
N +++IRN +NFGPQHPAAHGVL L E+
Sbjct: 14 NATESKQEIRNYTMNFGPQHPAAHGVLRLILEM 46
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,480,742,386
Number of Sequences: 23463169
Number of extensions: 285747021
Number of successful extensions: 648070
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4369
Number of HSP's successfully gapped in prelim test: 483
Number of HSP's that attempted gapping in prelim test: 625787
Number of HSP's gapped (non-prelim): 13412
length of query: 385
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 241
effective length of database: 8,980,499,031
effective search space: 2164300266471
effective search space used: 2164300266471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)