BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7154
(385 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q641Y2|NDUS2_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial OS=Rattus norvegicus GN=Ndufs2 PE=1 SV=1
Length = 463
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/295 (67%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+VSAEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 VVSAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND V EK + N+ +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPSKETAHWKPPPWNDVDVLKEKVVTNVTLNFGPQHPAAHGVLRLVLELS 102
>sp|Q91WD5|NDUS2_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial OS=Mus musculus GN=Ndufs2 PE=1 SV=1
Length = 463
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/295 (67%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITRILNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GLLDDIY F FS R+DEVE+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 VVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+EQ +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YS+AVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND + EK + NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDILKEKAVTNMTLNFGPQHPAAHGVLRLVLELS 102
>sp|P17694|NDUS2_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial OS=Bos taurus GN=NDUFS2 PE=1 SV=2
Length = 463
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/295 (66%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFW+FEEREKM EFYER
Sbjct: 158 LLNIQPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAYVRPGGV D+P+GL+DDIY F FS R+DE+E+MLT NR+W RT D+G
Sbjct: 217 VSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
IV+AEDALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+PIG+ G+ + ++E
Sbjct: 277 IVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQS+RI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSIRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI+
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQ 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + + N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPTKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELS 102
>sp|Q0MQG3|NDUS2_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial OS=Pongo pygmaeus GN=NDUFS2 PE=2 SV=1
Length = 463
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 234/295 (79%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA+L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLASLDKMSKGHMLADVVAII 451
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVEPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELS 102
>sp|Q0MQG4|NDUS2_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS2 PE=2
SV=1
Length = 463
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 5 VLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 51 VMYPSKETAHWKPPPWNDVDPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELS 102
>sp|Q0MQG5|NDUS2_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial OS=Pan troglodytes GN=NDUFS2 PE=2 SV=1
Length = 463
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++NM +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDPPKDTIVKNMTLNFGPQHPAAHGVLRLVMELS 102
>sp|O75306|NDUS2_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial OS=Homo sapiens GN=NDUFS2 PE=1 SV=2
Length = 463
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/295 (65%), Positives = 233/295 (78%), Gaps = 21/295 (7%)
Query: 35 VINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYER 94
++N P P A + +LF EITR+LNHIMAV THALD+GAMTPFFWLFEEREKM EFYER
Sbjct: 158 LLNIRPP-PRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYER 216
Query: 95 ASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVG 154
SGARMHAAY+RPGGV D+P+GL+DDIY F FS RLDE+E++LT NR+W RT D+G
Sbjct: 217 VSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIG 276
Query: 155 IVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKE 209
+V+AE+ALNYGFSGVMLRGSGI+WDLRK QPYD Y+ EFD+P+G+ G+ + ++E
Sbjct: 277 VVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEE 336
Query: 210 MRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGAT 254
MRQSLRI+ Q +NKMP GE++ DD K+S P R+EMK GY VPPGAT
Sbjct: 337 MRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGAT 396
Query: 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
YTA+EAPKGEFGVYLVSDG+S+PYRCKIKAPGFAHLA L+K+ KG LAD+VAII
Sbjct: 397 YTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAII 451
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 63/72 (87%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAVEKLLNI
Sbjct: 103 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIR 162
Query: 363 VPLRAKYIRVMF 374
P RA++IRV+F
Sbjct: 163 PPPRAQWIRVLF 174
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 35/53 (66%)
Query: 4 VVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
V+YP KE WK WND P + ++N+ +NFGPQHPAAHGVL L E++
Sbjct: 50 AVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELS 102
>sp|O21270|NDUS2_RECAM NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas
americana GN=NAD7 PE=3 SV=1
Length = 396
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 182/285 (63%), Positives = 219/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH+MAV THALDVGAMTPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 100 AQYIRVLFCEITRILNHLMAVTTHALDVGAMTPFLWGFEEREKLMEFYERVSGARMHAAY 159
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGV+ D+P+GL +DIY F F +R+DE+ED+L+ NR+W QR D+G VSAE+AL++
Sbjct: 160 IRPGGVSQDMPMGLSEDIYKFAKQFGSRIDEIEDVLSSNRIWKQRLVDIGTVSAEEALDW 219
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPYD Y+ EFDIP+GT G+ +I ++EMRQSL+++ Q
Sbjct: 220 GFSGVMLRGSGIAWDLRKTQPYDVYDELEFDIPVGTKGDCYDRYLIRVEEMRQSLKLIMQ 279
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G ++ DD KIS PSR +MK GY VP G TYTAVEAPKGE
Sbjct: 280 CLNKMPTGVIKVDDKKISPPSRVDMKDSMEALIHHFKLYTEGYSVPIGETYTAVEAPKGE 339
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG+SKPYRCKIKAPGF+HL L + KG +AD+V II
Sbjct: 340 FGVYLVSDGSSKPYRCKIKAPGFSHLQGLNFMSKGHMIADVVTII 384
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMM E YSLAVEKLL E
Sbjct: 36 GEVVNRADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMAQEHAYSLAVEKLLGCE 95
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV+F
Sbjct: 96 VPKRAQYIRVLFC 108
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+++N +NFGPQHPAAHGVL L E+
Sbjct: 8 KKLKNFTMNFGPQHPAAHGVLRLVLELN 35
>sp|Q37619|NDUS2_PROWI NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca
wickerhamii GN=NAD7 PE=3 SV=1
Length = 400
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/285 (61%), Positives = 219/285 (76%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++AV HA+DVGA+TPF W FEEREK+MEFYER SGARMHAAY
Sbjct: 104 AQYIRVLFSEITRILNHLLAVTCHAMDVGALTPFLWGFEEREKLMEFYERVSGARMHAAY 163
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVALD+P+GL +DIY F F++R+DE+E+MLT NR+W QR DVG+VSAE AL++
Sbjct: 164 IRPGGVALDLPLGLCEDIYKFSKQFASRIDEIEEMLTSNRIWKQRLVDVGVVSAEQALDW 223
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
FSGV+LRGSGI WDLRK QPY+ Y+ +F+IP+GT G+ +I ++EMR+SLRIV Q
Sbjct: 224 SFSGVLLRGSGIAWDLRKTQPYEVYDRMKFNIPVGTRGDCYDRYLIRVQEMRESLRIVMQ 283
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
IN+M G +R DD KI+ P+R +MK G+ VP G TYTAVEAPKGE
Sbjct: 284 TINEMSKGIIRLDDRKITPPTRDQMKQSMESLIHHFKFYTGGFVVPAGETYTAVEAPKGE 343
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GTSKPYRCKI+APGFAHL L+ + + LAD+V II
Sbjct: 344 FGVYLVSNGTSKPYRCKIRAPGFAHLQGLDFMARNHMLADVVTII 388
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 64/75 (85%), Gaps = 2/75 (2%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNI- 361
++V DPHIGLLHRGTEKLIEYK Y QALPYFDRLDYVSMMC E YSLAVEKLLNI
Sbjct: 38 GEVVQRSDPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVSMMCQEHAYSLAVEKLLNIS 97
Query: 362 -EVPLRAKYIRVMFT 375
++PLRA+YIRV+F+
Sbjct: 98 KDIPLRAQYIRVLFS 112
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEIT 56
+N INFGPQHPAAHGVL L E+
Sbjct: 13 KNFTINFGPQHPAAHGVLRLVLEMN 37
>sp|Q93873|NDUS2_CAEEL Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial OS=Caenorhabditis elegans GN=gas-1 PE=3
SV=2
Length = 482
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/279 (63%), Positives = 211/279 (75%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L E+TRI NHIM + THALDVGAMTPFFW+FEEREK+ EF ER SGARMHA YVRPGGV
Sbjct: 192 LMGELTRIQNHIMGITTHALDVGAMTPFFWMFEEREKLFEFSERVSGARMHANYVRPGGV 251
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+PIGL+DDIY + F R+DE+EDMLTENR+W RT D+G+VSA DALN+GFSGVM
Sbjct: 252 AWDLPIGLMDDIYDWAIKFPERIDELEDMLTENRIWKARTIDIGLVSAADALNWGFSGVM 311
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
+RGSGIK D+RK +PYD Y + EFD+PIGT G+ + ++EMRQSL IV Q +NKMP
Sbjct: 312 VRGSGIKQDVRKTEPYDAYADMEFDVPIGTKGDCYDRYLCRIEEMRQSLNIVHQCLNKMP 371
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GE++ DD K+ P R+EMK G+ VPPGATY +EAPKGEFGVYLV
Sbjct: 372 AGEIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLV 431
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
+DGT KPYRC I+APGFAHLAA+ + S +ADIVA+I
Sbjct: 432 ADGTGKPYRCFIRAPGFAHLAAIHDVCYMSLIADIVAVI 470
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/63 (84%), Positives = 58/63 (92%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHR TEKLIE+KTYTQALPYFDRLDYVSMMCNEQ +SLAVEKLL I++P RAKYI
Sbjct: 130 PHIGLLHRATEKLIEHKTYTQALPYFDRLDYVSMMCNEQAWSLAVEKLLGIDIPTRAKYI 189
Query: 371 RVM 373
R +
Sbjct: 190 RTL 192
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
EK + NM++NFGPQHPAAHGVL L ++
Sbjct: 93 EKNLENMILNFGPQHPAAHGVLRLVLKL 120
>sp|P22142|NDUS2_NEUCR NADH-ubiquinone oxidoreductase 49 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-49 PE=1 SV=2
Length = 478
Score = 359 bits (921), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/279 (60%), Positives = 209/279 (74%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
+FAEITRILNH+M+V +HA+DVGA+TPF W FEEREK+MEFYER SGAR+HAAYVRPGGV
Sbjct: 188 MFAEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGV 247
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
DIP+GLLDDIY + + F R+DE E+MLT+NR+WI R + +G+VSA DALN F+GVM
Sbjct: 248 HQDIPLGLLDDIYMWATQFGDRIDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVM 307
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LRGSG+ WD+RK QPYD Y+ EFD+P+G +G+ + M+E RQSLRI+ Q +NKMP
Sbjct: 308 LRGSGVPWDIRKSQPYDAYDQVEFDVPVGINGDCYDRYLCRMEEFRQSLRIIHQCLNKMP 367
Query: 226 GGEVRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLV 270
G VR +D KIS P RS M KGY VPPG TY+A+EAPKGE GVY+V
Sbjct: 368 AGPVRVEDYKISPPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEAPKGEMGVYVV 427
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDG+ +PYR I+APGFAHL + + +G LAD VA+I
Sbjct: 428 SDGSERPYRVHIRAPGFAHLGGFDHLSRGHMLADAVAVI 466
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 60/66 (90%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPH+GLLHRGTEKL EY+TY QALPYFDRLDYVSMM NEQC++LAVEKLLN+E+P RAK+
Sbjct: 125 DPHVGLLHRGTEKLCEYRTYLQALPYFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKW 184
Query: 370 IRVMFT 375
IR MF
Sbjct: 185 IRTMFA 190
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
+ +++R+ +NFGPQHPAAHGVL L E+
Sbjct: 88 LARKVRHYTVNFGPQHPAAHGVLRLILEL 116
>sp|Q9TC96|NDUS2_NEPOL NADH dehydrogenase [ubiquinone] iron-sulfur protein 2
OS=Nephroselmis olivacea GN=NAD7 PE=3 SV=1
Length = 398
Score = 357 bits (915), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 164/285 (57%), Positives = 213/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SG+RMHAAY
Sbjct: 102 AQYIRVLFSEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLIEFYERVSGSRMHAAY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P L +DIY F F++R+DE+E+MLT NR+W QR D+GIV+AE+A +
Sbjct: 162 IRPGGVACDLPANLCEDIYLFCQQFASRIDEMEEMLTNNRIWKQRLVDIGIVTAENAFAW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGV+LRGSG+ WDLRK QPYD Y FD+P+GT G+ + ++EMRQS+ I+ Q
Sbjct: 222 GFSGVLLRGSGVAWDLRKTQPYDVYNRMIFDVPVGTQGDCYDRYLCRVEEMRQSIHIIMQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N++P G ++ DD KI+ PSRS+MK GY VP TYT+VEAPKGE
Sbjct: 282 CLNQLPKGMIKADDKKITPPSRSQMKQSMESLIHHFKLFTEGYTVPNSETYTSVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS+GT++PYRCKI+APGF HL L+ + K LAD+V II
Sbjct: 342 FGVYLVSNGTNRPYRCKIRAPGFLHLQGLDMMSKNHMLADVVTII 386
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 65/73 (89%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++VA DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMC E YSLAVEKLL+ E
Sbjct: 38 GEVVARADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCQEHAYSLAVEKLLHCE 97
Query: 363 VPLRAKYIRVMFT 375
VP RA+YIRV+F+
Sbjct: 98 VPERAQYIRVLFS 110
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEIT 56
K+++N +NFGPQHPAAHGVL L E+
Sbjct: 10 KKVKNFTLNFGPQHPAAHGVLRLVLELN 37
>sp|Q3YS37|NUOD_EHRCJ NADH-quinone oxidoreductase subunit D OS=Ehrlichia canis (strain
Jake) GN=nuoD PE=3 SV=1
Length = 393
Score = 352 bits (904), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 161/280 (57%), Positives = 215/280 (76%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++F E+TRILNH++ + + ALD+GAMTP W+FEEREK++ FYERASGAR H+AY+RPGG
Sbjct: 102 VIFCELTRILNHLLNISSQALDIGAMTPLLWMFEEREKILGFYERASGARFHSAYIRPGG 161
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA D+P L+DDI+ F+STFS +D+++D+LTENR+W QR D+G+VS + AL++GFSG
Sbjct: 162 VAADVPSDLIDDIFKFVSTFSKFMDDIDDLLTENRIWKQRNVDIGVVSKKQALDWGFSGP 221
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR GI WDLRK QPY+ YE+ EF+IP+G +G+ ++ M E+RQS++++EQ ++++
Sbjct: 222 MLRACGIPWDLRKSQPYEIYEDLEFEIPVGENGDCYDRYLVRMAEIRQSIKLLEQCLDRL 281
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+TDD KI+ P RSEMK GY VP G TY AVEAPKGEFGVY+
Sbjct: 282 PDGPVKTDDRKIAPPKRSEMKESMEALIHHFKLYSEGYSVPVGETYMAVEAPKGEFGVYI 341
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRC+I+APGFAHL A++ I KG LAD+ AII
Sbjct: 342 VSDGTNKPYRCRIRAPGFAHLQAIDIIAKGHMLADLTAII 381
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 33 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMAQEHAYSLCVEKLLKCE 92
Query: 363 VPLRAKYIRVMFT 375
+P+RAKY+RV+F
Sbjct: 93 IPIRAKYLRVIFC 105
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 6 KITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHI 43
>sp|Q37720|NDUS2_PYLLI NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Pylaiella
littoralis GN=NAD7 PE=3 SV=1
Length = 398
Score = 352 bits (902), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 169/285 (59%), Positives = 211/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LFAEITRILNH++AVG HA+DVGAMTPF W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQFIRVLFAEITRILNHLLAVGCHAMDVGAMTPFLWAFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ DI +GL+DDI+ F++ F RLDE+E+MLT+NR+W +R D+G+VSA++A+++
Sbjct: 162 FRPGGVSQDISVGLVDDIFAFVAQFGQRLDEIEEMLTDNRIWQERLVDIGVVSAQEAIDW 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQ 219
GFSGVMLRGSGI+WDLRK +PY+ Y + F +G G+ ++EMRQSL I+ Q
Sbjct: 222 GFSGVMLRGSGIRWDLRKNEPYEIYSDLNFQGVVGKTGDCYDRYLARVEEMRQSLSIIYQ 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+NKMP G V+ DD KIS PSRSE+K G VP G TYTA EAPKGE
Sbjct: 282 CLNKMPRGSVKIDDAKISPPSRSEVKQSMESLIHHFKLYTEGVFVPAGETYTATEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVS G+S+PYRCKIKAPGF+HL L + LAD+V II
Sbjct: 342 FGVYLVSKGSSRPYRCKIKAPGFSHLQGLNFMACSHMLADVVTII 386
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QALPYFDRLDYVSMMC E Y+L+VE LL +
Sbjct: 38 GEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDYVSMMCQEHTYALSVENLLQVS 97
Query: 363 VPLRAKYIRVMFT 375
+P RA++IRV+F
Sbjct: 98 IPRRAQFIRVLFA 110
Score = 39.3 bits (90), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 33 NMVINFGPQHPAAHGVLLLFAEIT 56
+ INFGPQHPAAHGVL L E+
Sbjct: 14 HFTINFGPQHPAAHGVLRLILELN 37
>sp|Q2GGK7|NUOD_EHRCR NADH-quinone oxidoreductase subunit D OS=Ehrlichia chaffeensis
(strain Arkansas) GN=nuoD PE=3 SV=1
Length = 393
Score = 350 bits (899), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 162/280 (57%), Positives = 212/280 (75%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++F E+TRILNH++ + + ALD+GAMTP W+FEEREK++ FYERASGAR H+AY+RPGG
Sbjct: 102 VIFCELTRILNHLLNISSQALDIGAMTPLLWMFEEREKILGFYERASGARFHSAYIRPGG 161
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA D+P L+DDI+ FI TF +D+V+++LTENR+W QR D+GIVS E AL++GFSG
Sbjct: 162 VAADVPDDLIDDIFKFIKTFPKFIDDVDELLTENRIWKQRNVDIGIVSKEQALDWGFSGP 221
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR GI WDLRK QPY+ YE+ EF+IPIG G+ ++ M E+RQS++++EQ +N++
Sbjct: 222 MLRACGIPWDLRKSQPYEIYEDLEFEIPIGKKGDCYDRYLVRMAEIRQSIKLLEQCLNRL 281
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G ++TDD KI+ P RSEMK GY VP G TY AVEAPKGEFGVY+
Sbjct: 282 PNGPIKTDDRKIAPPKRSEMKESMEALIHHFKLYSEGYSVPIGETYMAVEAPKGEFGVYI 341
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRC+I+APGFAHL A++ + KG LAD+ AII
Sbjct: 342 VSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAII 381
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS MC E YSL VEKLL E
Sbjct: 33 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMCQEHAYSLCVEKLLKCE 92
Query: 363 VPLRAKYIRVMFT 375
+P+RAKY+RV+F
Sbjct: 93 IPIRAKYLRVIFC 105
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 6 KITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHI 43
>sp|P93306|NDUS2_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 2
OS=Arabidopsis thaliana GN=NAD7 PE=1 SV=2
Length = 394
Score = 348 bits (894), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 160/285 (56%), Positives = 211/285 (74%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRILNH++A+ THA+DVGA+TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+MLT NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRG G+ WDLR+ PYD Y+ +FD+P+GT G+ I ++EMRQSLRI+ Q
Sbjct: 218 GFSGVMLRGPGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSR MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRCRMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYRCKI+APGFAHL L+ + K LAD+V II
Sbjct: 338 FGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTII 382
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLLHRGTEKLIEYKTY QALPYFDR DYVSMM E YSLAVEKLLN E
Sbjct: 34 GEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRSDYVSMMAQEHAYSLAVEKLLNCE 93
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLFC 106
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
++QI+N +NFGPQHPAAHGVL L E+
Sbjct: 5 KRQIKNFTLNFGPQHPAAHGVLRLVLEMN 33
>sp|Q5HB88|NUOD_EHRRW NADH-quinone oxidoreductase subunit D OS=Ehrlichia ruminantium
(strain Welgevonden) GN=nuoD PE=3 SV=1
Length = 393
Score = 347 bits (891), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 161/280 (57%), Positives = 209/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++F E+TRILNH++ + + ALD+GAMTP W+FEEREK++ FYERASGAR H+AY+RPGG
Sbjct: 102 VIFCELTRILNHLLNISSQALDIGAMTPLLWMFEEREKILNFYERASGARFHSAYIRPGG 161
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA DIP L+ DI+ F++TF +D+V+ +LTENR+W QR D+G+VS + ALN+GFSG
Sbjct: 162 VAADIPEDLIHDIFQFVNTFPKFMDDVDSLLTENRIWKQRNVDIGVVSKKQALNWGFSGP 221
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR GI WDLRK QPY+ Y+ EF IPIG G+ ++ M E+R+S+R+VEQ +N++
Sbjct: 222 MLRACGIPWDLRKSQPYEIYDELEFKIPIGEKGDCYDRYLVRMAEIRESIRLVEQCLNRI 281
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+TDD KI+ P RSEMK GY VP G TY AVEAPKGEFGVY+
Sbjct: 282 PDGPVKTDDRKIAPPKRSEMKKSMEALIHHFKLYSEGYSVPAGETYMAVEAPKGEFGVYI 341
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRC+I+APGFAHL A++ + KG LAD+ AII
Sbjct: 342 VSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAII 381
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 33 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMAQEHAYSLCVEKLLKCE 92
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 93 VPIRAKYLRVIFC 105
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 6 KITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHI 43
>sp|Q5FGV3|NUOD_EHRRG NADH-quinone oxidoreductase subunit D OS=Ehrlichia ruminantium
(strain Gardel) GN=nuoD PE=3 SV=1
Length = 393
Score = 343 bits (881), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 160/280 (57%), Positives = 208/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++F E+TRILNH++ + + ALD+GAMTP W+FEEREK++ FYERASGAR H+AY+RPGG
Sbjct: 102 VIFCELTRILNHLLNISSQALDIGAMTPLLWMFEEREKILNFYERASGARFHSAYIRPGG 161
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA DIP L+ DI+ F++TF +D+V+ +LTENR+W QR D+G+VS + ALN+GFSG
Sbjct: 162 VAADIPEDLIHDIFQFVNTFPKFMDDVDSLLTENRIWKQRNVDIGVVSKKQALNWGFSGP 221
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR GI WDLRK QPY+ Y+ EF IPIG G+ ++ M E+R+S+ +VEQ +N++
Sbjct: 222 MLRACGIPWDLRKSQPYEIYDELEFKIPIGEKGDCYDRYLVRMAEIRESISLVEQCLNRI 281
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+TDD KI+ P RSEMK GY VP G TY AVEAPKGEFGVY+
Sbjct: 282 PDGPVKTDDRKIAPPKRSEMKKSMEALIHHFKLYSEGYIVPAGETYMAVEAPKGEFGVYI 341
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRC+I+APGFAHL A++ + KG LAD+ AII
Sbjct: 342 VSDGTNKPYRCRIRAPGFAHLQAIDMMAKGHMLADLTAII 381
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 33 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMAQEHAYSLCVEKLLKCE 92
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 93 VPIRAKYLRVIFC 105
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 6 KITPMTLNFGPQHPAAHGVMRLVLEMGGEVIERIDPHI 43
>sp|Q37384|NDUS2_ACACA NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Acanthamoeba
castellanii GN=NAD7 PE=3 SV=1
Length = 401
Score = 342 bits (876), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 163/285 (57%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++++E+TRILNHI+AV THA+DVGA+TPF WLFEEREK+MEFYER SGARMHAAY
Sbjct: 105 AQYIRVIYSELTRILNHILAVTTHAMDVGALTPFLWLFEEREKLMEFYERVSGARMHAAY 164
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D P+GL +DI F+ F RL EVE++L NR+W QR DVGIV+AE+AL++
Sbjct: 165 IRPGGVAQDFPLGLWNDIMQFVEQFFWRLVEVEELLNGNRIWKQRLVDVGIVTAEEALSH 224
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK PY+ Y F+IPIG +G+ +I + EM +SL I++Q
Sbjct: 225 GFSGVMLRGSGIAWDLRKNNPYEVYNKLNFNIPIGKNGDCYDRYLIRVYEMYESLNIIKQ 284
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ MP G ++ +D KI+ P R++MK G+ VP TY VEAPKGE
Sbjct: 285 CLTAMPAGLIKVNDKKITPPERTDMKYSMESLIHHFKLYSEGFNVPENETYACVEAPKGE 344
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVY+VSDG++KPYRCKIKAPGF HL +L + KG +AD+V II
Sbjct: 345 FGVYVVSDGSNKPYRCKIKAPGFLHLQSLNSMSKGHMIADVVTII 389
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 62/73 (84%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM E YSLA+EKLLN
Sbjct: 41 GELVRKADPHIGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMSQEHAYSLAIEKLLNCN 100
Query: 363 VPLRAKYIRVMFT 375
VP+RA+YIRV+++
Sbjct: 101 VPIRAQYIRVIYS 113
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 30 QIRNMVINFGPQHPAAHGVLLLFAEI 55
+I+N +NFGPQHPAAHGVL L E+
Sbjct: 14 KIKNFTMNFGPQHPAAHGVLRLILEL 39
>sp|Q73HJ8|NUOD_WOLPM NADH-quinone oxidoreductase subunit D OS=Wolbachia pipientis wMel
GN=nuoD PE=3 SV=1
Length = 390
Score = 339 bits (869), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 208/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ V + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 99 VLFCELTRILNHLLNVSSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 158
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A D+P L++DI FI F +D+V+++LTENR+W QRT + +S + AL++GFSG
Sbjct: 159 IAADVPEDLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGP 218
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +FDIPIG +G+ ++ M E+RQS+ +V+Q I KM
Sbjct: 219 MLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSISLVKQCIEKM 278
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G+++T+D KIS PSR+EMK GY VP G Y VEAPKGEFGVY+
Sbjct: 279 PEGQIKTEDRKISPPSRAEMKKSMEALIHHFKLYSEGYHVPEGEAYAVVEAPKGEFGVYI 338
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG LAD+ AII
Sbjct: 339 VSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAII 378
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 30 GEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCE 89
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 90 VPIRAKYLRVLFC 102
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
++ M++NFGPQHPAAHGVL L E+
Sbjct: 4 LKTMMLNFGPQHPAAHGVLRLVLEM 28
>sp|B3CLH1|NUOD_WOLPP NADH-quinone oxidoreductase subunit D OS=Wolbachia pipientis subsp.
Culex pipiens (strain wPip) GN=nuoD PE=3 SV=1
Length = 390
Score = 339 bits (869), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 161/280 (57%), Positives = 208/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ + + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 99 VLFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 158
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A DIP GL++DI FI F +D+V+++LTENR+W QRT + +S + AL++GFSG
Sbjct: 159 LAADIPEGLIEDIAKFIEQFPKYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGP 218
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +FDIPIG +G+ ++ M E+RQS+ +V+Q I KM
Sbjct: 219 MLRAAGLAWDLRKSQPYEIYDQLDFDIPIGQNGDCYDRYLVRMAEIRQSVSLVKQCIEKM 278
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G ++T+D KIS P R+EMK GY VP G Y AVEAPKGEFGVY+
Sbjct: 279 PEGPIKTEDRKISPPPRAEMKESMEAMIHHFKLYSEGYHVPEGEAYVAVEAPKGEFGVYI 338
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG LADI AII
Sbjct: 339 VSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADIAAII 378
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 30 GEVIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCE 89
Query: 363 VPLRAKYIRVMFT 375
+P+RAKY+RV+F
Sbjct: 90 IPIRAKYLRVLFC 102
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
++ M++NFGPQHPAAHGVL L E+
Sbjct: 4 LKTMMLNFGPQHPAAHGVLRLVLEM 28
>sp|Q5GTF8|NUOD_WOLTR NADH-quinone oxidoreductase subunit D OS=Wolbachia sp. subsp.
Brugia malayi (strain TRS) GN=nuoD PE=3 SV=1
Length = 390
Score = 338 bits (867), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 209/280 (74%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
+LF E+TRILNH++ + + ALDVGAMTP WLFEEREK++EFYERASGAR HAAY+RPGG
Sbjct: 99 VLFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGG 158
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
VA D+P GL++DI FI F +D+V+++LTENR+W QRT + +S + AL++GFSG
Sbjct: 159 VAADVPEGLIEDIAKFIEQFPQYIDDVDELLTENRIWKQRTVGISEISIKQALDWGFSGP 218
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR +G+ WDLRK QPY+ Y+ +FDIP+G +G+ ++ M+E+RQS+ +V+Q I K+
Sbjct: 219 MLRAAGLAWDLRKSQPYEIYDQLDFDIPVGQNGDCYDRYLVRMEEIRQSVSLVKQCIEKI 278
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+T+D KIS P R+EMK GY VP G Y AVEAPKGEFGVY+
Sbjct: 279 PEGPVKTEDRKISPPPRTEMKRSMEALIHHFKLYSEGYHVPEGEAYAAVEAPKGEFGVYI 338
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT++PYRC+I+APGFAHL AL+ + KG LAD+ AII
Sbjct: 339 VSDGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAII 378
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+I+ DPHIGLLHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL E
Sbjct: 30 GEIIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCE 89
Query: 363 VPLRAKYIRVMFT 375
VP+RAKY+RV+F
Sbjct: 90 VPIRAKYLRVLFC 102
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEI 55
++ M++NFGPQHPAAHGVL L E+
Sbjct: 4 LKTMMLNFGPQHPAAHGVLRLVLEM 28
>sp|B3CSH1|NUOD_ORITI NADH-quinone oxidoreductase subunit D OS=Orientia tsutsugamushi
(strain Ikeda) GN=nuoD PE=3 SV=1
Length = 396
Score = 338 bits (866), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 158/285 (55%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+E+TRILNH + + T ALDVGA TP W+FEEREK+MEFYER SG+R+HA Y
Sbjct: 100 AQYIRVMFSELTRILNHTLNIATQALDVGATTPLLWMFEEREKIMEFYERVSGSRLHANY 159
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV+ D+P GL+++I F F ++ ++E +LT+NR+W QRT D+GIVS + A+++
Sbjct: 160 FRPGGVSQDLPEGLIENIADFCEQFPCKIADLETLLTDNRIWKQRTVDIGIVSKQQAMDW 219
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPYD Y N +FD+ IG +G+ +I ++EM QS++I++Q
Sbjct: 220 GFSGVMLRGSGIAWDLRKSQPYDQYANLDFDVAIGKNGDCYDRYLIRIEEMYQSIKIIKQ 279
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP GE+RT D IS P RSE+K GY VP G Y AVEAPKGE
Sbjct: 280 CIQKMPAGEIRTQDPSISPPKRSEIKKSMEALINHFKLYSEGYNVPAGEVYAAVEAPKGE 339
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL SDGT++PYRC+IKAPGFAHL L+ + +G L+DI+ II
Sbjct: 340 FGVYLYSDGTNRPYRCRIKAPGFAHLQGLDFMARGHSLSDIITII 384
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYVS MC E ++LA+E LL E
Sbjct: 36 GEIVERADPHIGLLHRGTEKLIEYKTYLQAIPYFDRLDYVSPMCQEHAFALAIEHLLKCE 95
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRVMF+
Sbjct: 96 VPLRAQYIRVMFS 108
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K + +N GPQHPA HGVL L E+
Sbjct: 8 KHSKKFKLNLGPQHPATHGVLRLILEM 34
>sp|A5CES2|NUOD_ORITB NADH-quinone oxidoreductase subunit D OS=Orientia tsutsugamushi
(strain Boryong) GN=nuoD PE=3 SV=1
Length = 396
Score = 336 bits (862), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 158/285 (55%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F+E+TRILNH + + T ALDVGA TP W+FEEREK+MEFYER SG+R+HA Y
Sbjct: 100 AQYIRVMFSELTRILNHTLNIATQALDVGATTPLLWMFEEREKIMEFYERVSGSRLHANY 159
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GL+++I F F ++ ++E +LT+NR+W QRT D+GIVS + A+++
Sbjct: 160 FRPGGVAQDLPEGLIENIVDFCEQFPCKIADLETLLTDNRIWKQRTVDIGIVSKQQAMDW 219
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSGI WDLRK QPYD Y N +FD+ IG +G+ +I ++EM QS++I++Q
Sbjct: 220 GFSGVMLRGSGIAWDLRKSQPYDQYANLDFDVAIGKNGDCYDRYLIRIEEMYQSIKIIKQ 279
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP GE++T D IS P RSE+K GY VP G Y AVEAPKGE
Sbjct: 280 CIQKMPVGEIKTQDPSISPPKRSEIKKSMEALINHFKLYSEGYNVPAGEVYAAVEAPKGE 339
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL SDGT++PYRC+IKAPGFAHL L+ + +G L+DI+ II
Sbjct: 340 FGVYLYSDGTNRPYRCRIKAPGFAHLQGLDFMARGHSLSDIITII 384
Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIEYKTY QA+PYFDRLDYVS MC E ++LA+E LL E
Sbjct: 36 GEIVERADPHIGLLHRGTEKLIEYKTYLQAIPYFDRLDYVSPMCQEHAFALAIEHLLKCE 95
Query: 363 VPLRAKYIRVMFT 375
VPLRA+YIRVMF+
Sbjct: 96 VPLRAQYIRVMFS 108
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K + +N GPQHPA HGVL L E+
Sbjct: 8 KHSKKFKLNLGPQHPATHGVLRLILEM 34
>sp|Q9TAJ7|NDUS2_CAFRO NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Cafeteria
roenbergensis GN=NAD7 PE=3 SV=1
Length = 398
Score = 334 bits (857), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 158/285 (55%), Positives = 207/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+EITRILNH++A+G H++DVGAMTP W FEEREK+MEFYER SGARMHA+Y
Sbjct: 102 AQWIRVLFSEITRILNHLLAIGCHSMDVGAMTPLLWGFEEREKLMEFYERVSGARMHASY 161
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P G ++D+Y FI FS RLDE+E++LT NR+W QR +VGIV+A+ A+
Sbjct: 162 IRPGGVAQDLPSGFVEDVYSFILDFSVRLDEIEELLTNNRIWKQRLVNVGIVTAKQAIQN 221
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGV+LR +GI WDLR+ QPY+ Y+ F IP+GT G+ +I M+EMRQSLRI+
Sbjct: 222 GFSGVLLRSTGIPWDLRRSQPYEIYDKVPFRIPVGTRGDCYDRYLIRMQEMRQSLRIMMA 281
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+ +PGG +++DD K P R EMK G+ VP G TY AVEAPKGE
Sbjct: 282 CLKYLPGGSIKSDDKKFVPPLRWEMKNSMESVIHHFKYFTEGFKVPAGQTYAAVEAPKGE 341
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GV+L+SDG+++P+RCKIKAPGF HL L ++ K +AD+V II
Sbjct: 342 MGVFLISDGSNQPFRCKIKAPGFFHLQNLPEMTKHHMIADVVTII 386
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/66 (72%), Positives = 55/66 (83%)
Query: 310 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 369
DPHIGLLHRGTEKLIE + Y QALPYFDRLDYVSMM E YSLAVE+L I +P RA++
Sbjct: 45 DPHIGLLHRGTEKLIENRNYLQALPYFDRLDYVSMMVQEHAYSLAVERLYGINIPQRAQW 104
Query: 370 IRVMFT 375
IRV+F+
Sbjct: 105 IRVLFS 110
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E +I++ +NFGPQHPAAHGVL L E+
Sbjct: 9 ETEIKDFTLNFGPQHPAAHGVLRLILELN 37
>sp|Q5PAR3|NUOD_ANAMM NADH-quinone oxidoreductase subunit D OS=Anaplasma marginale
(strain St. Maries) GN=nuoD PE=3 SV=1
Length = 398
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 153/287 (53%), Positives = 205/287 (71%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + ++F E+TR+LNH++ V + ALD GA TP W+FEERE+++ FYERASGAR HA
Sbjct: 100 PRAKYIRVIFCELTRVLNHLLNVSSQALDTGATTPLLWMFEERERLLSFYERASGARFHA 159
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGG+A D+P GLLDDI+ F +F LD+V+ +LTEN +W QR D+G+VS AL
Sbjct: 160 AYIRPGGIAADVPDGLLDDIHAFTESFPKLLDDVDGLLTENSIWKQRNVDIGVVSKAQAL 219
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GFSG MLR GI WDLRK QPY+ YE +F +P+G++G+ ++ M EMR+S+ I+
Sbjct: 220 DWGFSGPMLRACGIPWDLRKSQPYEIYETLDFKVPVGSNGDCYDRYLVRMAEMRESISII 279
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q +N +P G V+TDD KI+ P R E+K GY VP G Y AVEAPK
Sbjct: 280 RQCLNGIPEGPVKTDDRKIAPPRREELKYSMEALIHHFKLFSEGYKVPEGEAYVAVEAPK 339
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVY+VSDGT++PYRC+I+APGFAHL A++ + +G LAD+ AII
Sbjct: 340 GEFGVYIVSDGTNRPYRCRIRAPGFAHLQAIDAMARGHMLADLTAII 386
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ IDPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVS M E YSL VEKLL
Sbjct: 38 GEVIERIDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSPMSQEHAYSLCVEKLLQCV 97
Query: 363 VPLRAKYIRVMFT 375
VP RAKYIRV+F
Sbjct: 98 VPPRAKYIRVIFC 110
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+I+ M +NFGPQHPAAHGV+ L E I RI HI
Sbjct: 10 SRIKPMTLNFGPQHPAAHGVMRLILEMSGEVIERIDPHI 48
>sp|Q9ZDH4|NUOD_RICPR NADH-quinone oxidoreductase subunit D OS=Rickettsia prowazekii
(strain Madrid E) GN=nuoD PE=3 SV=1
Length = 389
Score = 332 bits (852), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 156/285 (54%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 93 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 152
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P LL+DI FI F ++L+++E++L ENRLW QR D+G+VS +DA+++
Sbjct: 153 FRPGGVAEDLPENLLEDINKFIEQFPSKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDW 212
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++PIG +G+ ++ + EM +S++I++Q
Sbjct: 213 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQ 272
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G+V+TDD K++ P+R +MK GY VP G TY AVEAPKGE
Sbjct: 273 CIVKMPKGQVKTDDPKLTPPTRGKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGE 332
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G +KPYRC+IKAPGFAHL L + KG +AD++ II
Sbjct: 333 FGVYLYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLIADVITII 377
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL
Sbjct: 29 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECS 88
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 89 VPRRAQFIRVLFS 101
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
+ + +N GPQHPA HGVL L E+
Sbjct: 4 KTITLNLGPQHPATHGVLRLILEM 27
>sp|Q4UM08|NUOD_RICFE NADH-quinone oxidoreductase subunit D OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=nuoD PE=3 SV=1
Length = 391
Score = 332 bits (851), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVAEDLPDGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEIDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ I KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFISKGHLMADVITII 379
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
+ + +N GPQHPA HGVL L E+
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEM 29
>sp|Q68X19|NUOD_RICTY NADH-quinone oxidoreductase subunit D OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=nuoD PE=3 SV=2
Length = 389
Score = 331 bits (848), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 208/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMHA Y
Sbjct: 93 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHANY 152
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P LL+DI FI F ++L+++E++L ENRLW QR D+G+VS +DA+++
Sbjct: 153 FRPGGVAEDLPEKLLEDINKFIEQFPSKLNDIENLLNENRLWKQRLVDIGVVSQKDAMDW 212
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++P+G +G+ ++ + EM +S++I++Q
Sbjct: 213 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFEVPVGKNGDCYDRYLVRILEMYESIKIIKQ 272
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G+V+TD+ K++ P+R +MK GY VP G TY AVEAPKGE
Sbjct: 273 CIAKMPKGQVKTDNPKLTPPTREKMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGE 332
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G +KPYRC+IKAPGFAHL L + KG ++D++ II
Sbjct: 333 FGVYLYSQGGNKPYRCRIKAPGFAHLQGLNFMSKGHLISDVITII 377
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL
Sbjct: 29 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECS 88
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 89 VPRRAQFIRVLFS 101
Score = 35.0 bits (79), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
+ + +N GPQHPA HGVL L E+
Sbjct: 4 KTITLNLGPQHPATHGVLRLILEM 27
>sp|Q1RJI9|NUOD_RICBR NADH-quinone oxidoreductase subunit D OS=Rickettsia bellii (strain
RML369-C) GN=nuoD PE=3 SV=2
Length = 391
Score = 330 bits (846), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 156/285 (54%), Positives = 206/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALDVGA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDVGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E++L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVAEDLPDGLLEDIDKFIQQFPPKLQDIENLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y +F++PIG +G+ ++ M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYAEMDFEVPIGKNGDCYDRYLVRMLEMYESVKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G Y AVEAPKGE
Sbjct: 275 CIEKMPQGPVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGEIYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSTGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LA E LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAAESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
+P RA++IRV+F+
Sbjct: 91 IPRRAQFIRVLFS 103
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
+++ +N GPQHPA HGVL L E+
Sbjct: 6 KSITLNLGPQHPATHGVLRLILEM 29
>sp|A8GX80|NUOD_RICB8 NADH-quinone oxidoreductase subunit D OS=Rickettsia bellii (strain
OSU 85-389) GN=nuoD PE=3 SV=1
Length = 391
Score = 330 bits (846), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 156/285 (54%), Positives = 206/285 (72%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALDVGA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDVGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E++L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVAEDLPDGLLEDIDKFIQQFPPKLQDIENLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y +F++PIG +G+ ++ M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYAEMDFEVPIGKNGDCYDRYLVRMLEMYESVKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G Y AVEAPKGE
Sbjct: 275 CIEKMPQGPVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGEIYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSTGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LA E LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAAESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
+P RA++IRV+F+
Sbjct: 91 IPRRAQFIRVLFS 103
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
+++ +N GPQHPA HGVL L E+
Sbjct: 6 KSITLNLGPQHPATHGVLRLILEM 29
>sp|A8GN50|NUOD_RICAH NADH-quinone oxidoreductase subunit D OS=Rickettsia akari (strain
Hartford) GN=nuoD PE=3 SV=2
Length = 391
Score = 329 bits (844), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 205/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVAEDLPDGLLEDIDKFIDQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ EF++PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMEFEVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+T+D K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTAGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G + PYRC+IK+PGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGVNIPYRCRIKSPGFAHLQGLDFMSKGHLMADVITII 379
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEIVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
+ + +N GPQHPA HGVL L E+
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEM 29
>sp|A8F1C5|NUOD_RICM5 NADH-quinone oxidoreductase subunit D OS=Rickettsia massiliae
(strain Mtu5) GN=nuoD PE=3 SV=2
Length = 391
Score = 328 bits (840), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYI 370
PHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL EVP RA++I
Sbjct: 39 PHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECEVPRRAQFI 98
Query: 371 RVMFT 375
RV+F+
Sbjct: 99 RVLFS 103
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
+ + +N GPQHPA HGVL L E+
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEM 29
>sp|Q92ID8|NUOD_RICCN NADH-quinone oxidoreductase subunit D OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=nuoD PE=3 SV=2
Length = 391
Score = 327 bits (839), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+ S ++A+++
Sbjct: 155 FRPGGVAADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVASQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + KG +AD++ II
Sbjct: 335 FGVYLYSQGGNRPYRCRIKAPGFAHLQGLDFMSKGHLMADVITII 379
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
+ + +N GPQHPA HGVL L E+
Sbjct: 6 KTITLNIGPQHPATHGVLRLILEM 29
>sp|Q36450|NDUS2_NICSY NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana
sylvestris GN=NAD7 PE=2 SV=1
Length = 394
Score = 325 bits (834), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 155/285 (54%), Positives = 204/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF EITRI NH +A+ THA+DVGA TPF W FEEREK++EFYER SGARMHA++
Sbjct: 98 AQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLLEFYERVSGARMHASF 157
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
+RPGGVA D+P+GL DI F F++R+DE+E+M T NR+W QR D+G V+A+ A ++
Sbjct: 158 IRPGGVAQDLPLGLCIDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDW 217
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVMLRGSG+ WDLRK PYD ++ + DIP+GT G+ I ++EMRQS+RI+ Q
Sbjct: 218 GFSGVMLRGSGVCWDLRKAAPYDVHDQLDPDIPVGTRGDRYDRYCIRIEEMRQSVRIIVQ 277
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
+N+MP G ++ DD K+ PSRS MK G+ VP +TYTAVEAPKGE
Sbjct: 278 CLNQMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGE 337
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGV+LVS+G+++PYR KI+AP FAH L+ + K AD+V II
Sbjct: 338 FGVFLVSNGSNRPYRRKIRAPCFAHSQGLDSMSKHHMPADVVTII 382
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 58/72 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +PHIGLL RGTEKLIEYKTY QALPY DR +YVSMM E +S AVE+LLN E
Sbjct: 34 GEVVERAEPHIGLLQRGTEKLIEYKTYLQALPYSDRSEYVSMMAQEHAHSSAVERLLNCE 93
Query: 363 VPLRAKYIRVMF 374
VPLRA+YIRV+F
Sbjct: 94 VPLRAQYIRVLF 105
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 29 KQIRNMVINFGPQHPAAHGV 48
+QI+N NFGPQHPAAHGV
Sbjct: 6 RQIKNFTSNFGPQHPAAHGV 25
>sp|B0BX71|NUOD_RICRO NADH-quinone oxidoreductase subunit D OS=Rickettsia rickettsii
(strain Iowa) GN=nuoD PE=3 SV=2
Length = 391
Score = 325 bits (833), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVVADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + +G +AD++ II
Sbjct: 335 FGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITII 379
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
+ + +N GPQHPA HGVL L E+
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEM 29
>sp|A8GRR5|NUOD_RICRS NADH-quinone oxidoreductase subunit D OS=Rickettsia rickettsii
(strain Sheila Smith) GN=nuoD PE=3 SV=1
Length = 391
Score = 325 bits (833), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 152/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYE SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYEHVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGV D+P GLL+DI FI F +L ++E +L ENRLW QR D+G+VS ++A+++
Sbjct: 155 FRPGGVVADLPEGLLEDIDKFIEQFPPKLHDIESLLNENRLWKQRLVDIGVVSQKEAMDW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F +PIG +G+ + M EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEMDFKVPIGKNGDCYDRYFVRMLEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G ++TDD K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAIKTDDPKLTPPTRAKMKESMEAMIHHFKLYTEGYDVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IKAPGFAHL L+ + +G +AD++ II
Sbjct: 335 FGVYLYSRGGNRPYRCRIKAPGFAHLQGLDFMSQGHLMADVITII 379
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL +
Sbjct: 31 GEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLECK 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAEI 55
+ + +N GPQHPA HGVL L E+
Sbjct: 6 KTITLNLGPQHPATHGVLRLILEM 29
>sp|A8EZ86|NUOD_RICCK NADH-quinone oxidoreductase subunit D OS=Rickettsia canadensis
(strain McKiel) GN=nuoD PE=3 SV=2
Length = 391
Score = 325 bits (833), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +LF+E+TRILNH + +G+ ALD+GA TP WLFEEREK+MEFYER SG+RMH+ Y
Sbjct: 95 AQFIRVLFSELTRILNHTLNIGSQALDIGATTPLLWLFEEREKIMEFYERVSGSRMHSNY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
RPGGVA D+P GLL+DI FI F +L +VE +L ENRLW QR D+G+V ++A+ +
Sbjct: 155 FRPGGVAEDLPDGLLEDIDKFIEQFHPKLQDVESLLNENRLWKQRLVDIGVVLQQEAMEW 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSG MLRGSGI WDLRK PYD Y+ +F++PIG +G+ ++ + EM +S++I++Q
Sbjct: 215 GFSGPMLRGSGIAWDLRKSNPYDVYDEIDFEVPIGKNGDCYDRYLVRILEMYESIKIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I KMP G V+T+D K++ P+R++MK GY VP G TY AVEAPKGE
Sbjct: 275 CIEKMPKGAVKTNDPKLTPPTRAKMKESMEAMIHHFKLYTEGYEVPAGETYKAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL S G ++PYRC+IK PGFAHL L + KG +AD++ II
Sbjct: 335 FGVYLYSIGNNQPYRCRIKTPGFAHLQGLNFMSKGHLMADVITII 379
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE+KTY QA+PYFDRLDYVS MC E ++LAVE LL E
Sbjct: 31 GEVVNNTDPHIGLLHRGTEKLIEHKTYLQAIPYFDRLDYVSPMCQEHAFALAVESLLKCE 90
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+F+
Sbjct: 91 VPRRAQFIRVLFS 103
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
I+ + +N GPQHPA HGVL L E+
Sbjct: 3 NNIKTITLNLGPQHPATHGVLRLILEM 29
>sp|Q2GDJ8|NUOD_NEOSM NADH-quinone oxidoreductase subunit D OS=Neorickettsia sennetsu
(strain Miyayama) GN=nuoD PE=3 SV=1
Length = 388
Score = 325 bits (832), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 155/287 (54%), Positives = 209/287 (72%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + ++F EITRILNH++ V THALDVGAM P FW+FEEREKM+ FYE+ASGAR HA
Sbjct: 90 PRAQYLRVIFVEITRILNHLLNVTTHALDVGAMNPLFWMFEEREKMLSFYEKASGARFHA 149
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
AY+RPGG+A DIP GL ++I F+ +F+ +LD+V D+LT+N ++ QR D+G VS +A+
Sbjct: 150 AYIRPGGLAADIPDGLDEEIMSFLESFTHKLDDVADVLTDNPIFKQRLVDIGKVSKREAV 209
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
GFSG +LR SG+ WDLRK QPY+ YE+ +F IP+G+ G+ ++ M EM +S++I+
Sbjct: 210 ALGFSGPVLRASGVPWDLRKSQPYEVYESLDFAIPVGSCGDSYDRYLVRMAEMYESVKII 269
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
+Q I+K+P G V DD K++ PSR+EMK GY VP G TY AVE+PK
Sbjct: 270 KQCIDKLPEGPVVVDDRKVAPPSRAEMKTSMEALIHHFKLYSEGYHVPEGETYFAVESPK 329
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVY+VSDGT+KPYRC+I+APGF HL AL+ + + LAD+ AI+
Sbjct: 330 GEFGVYIVSDGTNKPYRCRIRAPGFVHLQALDTLSRKHLLADVPAIL 376
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 57/73 (78%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+ V +DPHIG LHRGTEKLIE+KTY QALPYFDRLDYVS M E YSL VEKLL I
Sbjct: 28 GETVERLDPHIGFLHRGTEKLIEHKTYLQALPYFDRLDYVSPMAQEHAYSLCVEKLLGIT 87
Query: 363 VPLRAKYIRVMFT 375
VP RA+Y+RV+F
Sbjct: 88 VPPRAQYLRVIFV 100
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 36 INFGPQHPAAHGVLLLFAEI 55
+NFGPQHPAAHGVL L ++
Sbjct: 7 LNFGPQHPAAHGVLRLIMQL 26
>sp|B6ISX8|NUOD_RHOCS NADH-quinone oxidoreductase subunit D OS=Rhodospirillum centenum
(strain ATCC 51521 / SW) GN=nuoD PE=3 SV=1
Length = 398
Score = 322 bits (825), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/284 (55%), Positives = 204/284 (71%), Gaps = 22/284 (7%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF+EITRILNH++ + T LDVGA+TP W FEEREK+M FYER SGARMHA Y RP
Sbjct: 103 IRVLFSEITRILNHLLNITTFGLDVGAITPSLWGFEEREKLMAFYERVSGARMHANYFRP 162
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV LD+P GL DDI+ + F + ++ ++LTENR++ QRT D+G+VS DAL +GFS
Sbjct: 163 GGVNLDMPAGLADDIWEYTERFPKFVADLNNLLTENRIFKQRTVDIGVVSRADALAWGFS 222
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
G M+RGSG+ WDLRK QPYD Y+ F+FDIP+G+ G+ ++ M+EMRQS R++ QA+
Sbjct: 223 GPMIRGSGVPWDLRKAQPYDRYDEFDFDIPVGSTGDCYARYLVRMEEMRQSNRLIRQALE 282
Query: 223 KMPG--GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEF 265
K+ G V+ +D KI+ P R EMK GY VP G TYTAVE+PKGEF
Sbjct: 283 KLAKTPGPVKVNDRKIAPPPRGEMKRSMESLIHHFKLYTEGYHVPAGETYTAVESPKGEF 342
Query: 266 GVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GVYLVSDGT++PYRCKI+ GF+HL A++ + KG LAD VAII
Sbjct: 343 GVYLVSDGTNRPYRCKIRPTGFSHLQAMDFMSKGHMLADTVAII 386
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKLIEYKTY QALPYFDRLDYVS M E ++LA EKLL I
Sbjct: 36 GEVVQRADPHVGLLHRGTEKLIEYKTYIQALPYFDRLDYVSPMSQEHAFALATEKLLGIT 95
Query: 363 VPLRAKYIRVMFT 375
VP+R +YIRV+F+
Sbjct: 96 VPVRGQYIRVLFS 108
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E QI+ +NFGPQHPAAHGVL L E+
Sbjct: 6 AETQIKPFTMNFGPQHPAAHGVLRLVLEM 34
>sp|Q2GJY9|NUOD_ANAPZ NADH-quinone oxidoreductase subunit D OS=Anaplasma phagocytophilum
(strain HZ) GN=nuoD PE=3 SV=1
Length = 395
Score = 320 bits (820), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 148/280 (52%), Positives = 200/280 (71%), Gaps = 20/280 (7%)
Query: 50 LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109
++F E+TR+LNH++ V ALD GA TP W+FEEREK++ FYERASGAR H+AY+RPGG
Sbjct: 104 VIFCELTRLLNHLLNVACQALDSGATTPLLWIFEEREKILSFYERASGARFHSAYIRPGG 163
Query: 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGV 169
+A D+P GLLDDI+ F + F LD V+D+LTEN +W QR ++G V+ + AL++GFSG
Sbjct: 164 LAADVPDGLLDDIHEFTNYFPKLLDSVDDLLTENSIWKQRNVEIGKVTKQQALDWGFSGP 223
Query: 170 MLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM 224
MLR GI WDLRK QPY+ Y+ +F +P+G++G+ ++ M E+R+SL I+EQ + +
Sbjct: 224 MLRACGIPWDLRKSQPYEIYDILDFKVPVGSNGDCYDRYLVRMAEIRESLYILEQCLRDI 283
Query: 225 PGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYL 269
P G V+TDD KI+ P R E+K GY VP G Y AVEAPKGEFGVY+
Sbjct: 284 PSGPVKTDDRKIAPPKREELKYSMEALIHHFKLFSEGYKVPEGEAYAAVEAPKGEFGVYI 343
Query: 270 VSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VSDGT+KPYRC+I++PGFAHL A++ + +G LAD+ II
Sbjct: 344 VSDGTNKPYRCRIRSPGFAHLQAIDAMARGHMLADLPVII 383
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIGLLHRGTEKLIEYKTYT 330
SDG +KP A + I + S +++ IDPHIGLLHRGTEKLIEYKTY
Sbjct: 5 SDGYAKPMTINFGPQHPAAHGVMRLILEMS--GEVIERIDPHIGLLHRGTEKLIEYKTYL 62
Query: 331 QALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFT 375
QALPYFDRLDYVS M E YSL VE+LL EVP+RAKY+RV+F
Sbjct: 63 QALPYFDRLDYVSPMSQEHAYSLCVERLLGCEVPIRAKYLRVIFC 107
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 32 RNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI 62
+ M INFGPQHPAAHGV+ L E I RI HI
Sbjct: 10 KPMTINFGPQHPAAHGVMRLILEMSGEVIERIDPHI 45
>sp|A7HY46|NUOD_PARL1 NADH-quinone oxidoreductase subunit D OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=nuoD PE=3 SV=1
Length = 392
Score = 317 bits (813), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 203/285 (71%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + +L++EI RIL H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y
Sbjct: 96 AQFIRVLYSEIGRILAHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANY 155
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P LL+DIY+F S LD++E ++T+NR++ QR D+G+VS E+AL +
Sbjct: 156 FRTGGVHRDLPPKLLEDIYNFCDPCSQVLDDLEGLITDNRIFKQRNVDIGVVSQEEALEW 215
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQ 219
GFSGVM+RGSG+ WDLR+ QPY+ Y +FDIP+G +G+ + M+EMRQSLRI++Q
Sbjct: 216 GFSGVMVRGSGMAWDLRRAQPYEVYSELDFDIPVGKNGDCYDRYLCRMEEMRQSLRIMKQ 275
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
I MPGG V D K+ PSRSEMK GY VP G Y AVEAPKGE
Sbjct: 276 CIELMPGGPVHVLDGKVVPPSRSEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGE 335
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLVSDG +KPY+CKI+APG+AHL A++ + KG LAD+ AI+
Sbjct: 336 FGVYLVSDGGNKPYKCKIRAPGYAHLQAMDHLCKGHMLADVSAIL 380
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 59/73 (80%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V +DPHIGLLHRGTEKLIEYKTY QA PYFDRLDYV+ M E + LA E+LL +E
Sbjct: 32 GEVVERVDPHIGLLHRGTEKLIEYKTYLQATPYFDRLDYVAPMNQEHAFVLAAERLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
VP RA++IRV+++
Sbjct: 92 VPRRAQFIRVLYS 104
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E+++RN +NFGPQHPAAHGVL L E+
Sbjct: 3 EQELRNYHLNFGPQHPAAHGVLRLVLEL 30
>sp|Q2RU37|NUOD_RHORT NADH-quinone oxidoreductase subunit D OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=nuoD PE=3 SV=1
Length = 392
Score = 314 bits (805), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 154/287 (53%), Positives = 199/287 (69%), Gaps = 20/287 (6%)
Query: 43 PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHA 102
P A + LF E+TR++NHIM + ALD+GAMTP + FEERE ++EF ERASGARMHA
Sbjct: 94 PRAQYLRTLFNEVTRLINHIMNTTSMALDIGAMTPLLYGFEEREHLLEFSERASGARMHA 153
Query: 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDAL 162
A+ RPGGVA D+P LL+DI F +F LD+VE +L ENR++ QRT D+G V+A+ AL
Sbjct: 154 AWFRPGGVARDVPPDLLEDILKFCDSFPKYLDDVEHLLDENRIFKQRTVDIGKVTAQQAL 213
Query: 163 NYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIV 217
++GF+G +LRG G+ WDLRK QPYD Y +FDIP G +G+ ++ M E RQS+RI+
Sbjct: 214 DWGFTGPVLRGCGVPWDLRKSQPYDAYAAMDFDIPTGANGDCYDRYLVRMAEQRQSIRIM 273
Query: 218 EQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPK 262
Q I KMP G V+ D K++ PSR EMK G+ VP G TYTAVEA
Sbjct: 274 RQCIEKMPDGPVKAVDHKVTPPSRGEMKSSMEALIHHFKLFTEGFKVPEGETYTAVEAAT 333
Query: 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
GEFGVYLVSDGT++PYRCKI++PG+ HL L+ + +G LAD+VA I
Sbjct: 334 GEFGVYLVSDGTNRPYRCKIRSPGYVHLQGLDLMSRGHMLADVVANI 380
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 55/73 (75%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+++ DPHIGLLHRGTEKLIEYKTY QALPYFDRLDY M E Y LAVEKLL I
Sbjct: 32 GEVIERADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYACPMNQEHAYVLAVEKLLGIT 91
Query: 363 VPLRAKYIRVMFT 375
VP RA+Y+R +F
Sbjct: 92 VPPRAQYLRTLFN 104
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
+ +I++ +NFGPQHPAAHGVL L E++
Sbjct: 2 AQTEIKSYTLNFGPQHPAAHGVLRLVLELS 31
>sp|Q2W3I7|NUOD_MAGSA NADH-quinone oxidoreductase subunit D OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=nuoD PE=3
SV=1
Length = 392
Score = 311 bits (797), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 153/279 (54%), Positives = 194/279 (69%), Gaps = 20/279 (7%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
L+ EI RILNH++ V DVG MTP + FEEREK+MEFYER GAR+HA Y RPGGV
Sbjct: 102 LYDEIGRILNHLLNVTAFIFDVGGMTPLLYGFEEREKLMEFYERVCGARLHANYYRPGGV 161
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
A D+P GLL+DI + TF LD++E + T+NR++ QR D+G+VS E AL++GF+G
Sbjct: 162 AADLPAGLLEDIAAWCETFPKVLDDIETLATDNRIFKQRVVDIGVVSPEQALDWGFTGPN 221
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKMP 225
LR SGI WDLRK QPYD Y+ EFDIP+G +G+ ++ + EMR+S++I++Q I KMP
Sbjct: 222 LRASGIAWDLRKSQPYDVYDQMEFDIPVGKNGDGYDRYLVRVLEMRESVKIMKQCIAKMP 281
Query: 226 GGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLV 270
GG VR +D KI+ P RSEMK G+ VP G Y A+EAPKGEF VYLV
Sbjct: 282 GGPVRVEDNKITPPKRSEMKTSMESLIHHFKLFTEGFKVPAGEVYGAIEAPKGEFAVYLV 341
Query: 271 SDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
SDGT KPYRCKI+ PG+ HL AL+ + KG LAD+VA I
Sbjct: 342 SDGTGKPYRCKIRPPGYVHLQALDMMSKGHMLADVVANI 380
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 56/72 (77%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPH+GLLHRGTEKLIE+KTY QA PYFDRLDYV M E + LA EKLL I+
Sbjct: 32 GEVVDRADPHVGLLHRGTEKLIEHKTYLQATPYFDRLDYVGTMNQEHAFVLATEKLLGID 91
Query: 363 VPLRAKYIRVMF 374
+P+RAK+IR ++
Sbjct: 92 IPIRAKFIRTLY 103
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEIT 56
E QI++ INFGPQHPAAHGVL L E++
Sbjct: 3 ESQIQSYTINFGPQHPAAHGVLRLILEMS 31
>sp|Q23883|NDUS2_DICDI NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Dictyostelium
discoideum GN=nad7 PE=1 SV=1
Length = 406
Score = 311 bits (796), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 156/290 (53%), Positives = 204/290 (70%), Gaps = 22/290 (7%)
Query: 40 PQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGAR 99
PQ A + +LF+EITR+LNHIMA THA+DVGA+TPF W FEEREK+MEFYER SGAR
Sbjct: 107 PQR--AKVIRVLFSEITRVLNHIMATTTHAMDVGALTPFLWAFEEREKLMEFYERVSGAR 164
Query: 100 MHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAE 159
MHAAY+RPGGVA D+P+ + +DIY F+ + RL+E+EDML NR+W QR D+GIVSAE
Sbjct: 165 MHAAYIRPGGVAFDLPMNISEDIYKFVIQYRKRLEEIEDMLINNRIWKQRLVDIGIVSAE 224
Query: 160 DALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSL 214
+ALNYGF+G +LRG+GI +D+RK PYD Y+ ++F I IG N +I MKEM QSL
Sbjct: 225 EALNYGFTGPLLRGAGIVYDIRKNYPYDDYDKYDFKIIIGEENNSYTRFIIRMKEMYQSL 284
Query: 215 RIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVE 259
I+EQA+N + G ++ + + I+ P R+ +K G+ +P YT VE
Sbjct: 285 SIIEQALNNLRPGLIKLEGVNITAPDRAFVKKDMESCINHFKFFSEGFIIPANENYTIVE 344
Query: 260 APKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
APKGEFG+YL ++ T+KPYRC+IKAPGF HL L + K LAD+V +I
Sbjct: 345 APKGEFGIYLNANDTAKPYRCRIKAPGFLHLQGLNMMSKDHLLADVVTLI 394
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 59/76 (77%), Gaps = 6/76 (7%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL------L 359
V ++PHIGLLHRGTEKLIE KTYTQALPYFDRLDYVSM E YSLAVE+L +
Sbjct: 43 VVRVEPHIGLLHRGTEKLIEGKTYTQALPYFDRLDYVSMNVQEHAYSLAVERLYLDSLDI 102
Query: 360 NIEVPLRAKYIRVMFT 375
+E+P RAK IRV+F+
Sbjct: 103 ELEIPQRAKVIRVLFS 118
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI--MAVGTHALDVGAM----TP 77
K ++N +NFGPQHPAAHGVL L E + R+ HI + GT L G P
Sbjct: 12 KVMKNFTLNFGPQHPAAHGVLRLIVELESENVVRVEPHIGLLHRGTEKLIEGKTYTQALP 71
Query: 78 FFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIP 115
+F + M E A + Y+ + L+IP
Sbjct: 72 YFDRLDYVS--MNVQEHAYSLAVERLYLDSLDIELEIP 107
>sp|Q2LCR5|NDUS2_DICCI NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Dictyostelium
citrinum GN=nad7 PE=3 SV=1
Length = 406
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 156/290 (53%), Positives = 204/290 (70%), Gaps = 22/290 (7%)
Query: 40 PQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGAR 99
PQ A + +LF+EITR+LNHIMA THA+DVGA+TPF W FEEREK+MEFYER SGAR
Sbjct: 107 PQR--AKVIRVLFSEITRVLNHIMATTTHAMDVGALTPFLWAFEEREKLMEFYERVSGAR 164
Query: 100 MHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAE 159
MHAAY+RPGGVA D+P+ + +DIY F+ + RL+E+EDML NR+W QR D+GIVSAE
Sbjct: 165 MHAAYIRPGGVAFDLPMNISEDIYKFVIQYRKRLEEIEDMLINNRIWKQRLVDIGIVSAE 224
Query: 160 DALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSL 214
+ALNYGF+G +LRG+GI +D+RK PYD Y+ ++F I IG N +I MKEM QSL
Sbjct: 225 EALNYGFTGPLLRGAGIVYDIRKNYPYDDYDKYDFKIIIGEENNSYTRFIIRMKEMYQSL 284
Query: 215 RIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVE 259
I+EQA+N + G ++ + + I+ P R+ +K G+ +P YT VE
Sbjct: 285 AIIEQALNNLRPGLIKLEGVNITAPDRAFVKKDMESCINHFKFFSEGFIIPANENYTIVE 344
Query: 260 APKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
APKGEFG+YL ++ T+KPYRC+IKAPGF HL L + K LAD+V +I
Sbjct: 345 APKGEFGIYLNANDTAKPYRCRIKAPGFLHLQGLNMMSKDHLLADVVTLI 394
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 59/76 (77%), Gaps = 6/76 (7%)
Query: 306 VAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKL------L 359
V ++PHIGLLHRGTEKLIE KTYTQALPYFDRLDYVSM E YSLAVE+L +
Sbjct: 43 VVRVEPHIGLLHRGTEKLIEGKTYTQALPYFDRLDYVSMNVQEHAYSLAVERLYLDSLDI 102
Query: 360 NIEVPLRAKYIRVMFT 375
+E+P RAK IRV+F+
Sbjct: 103 ELEIPQRAKVIRVLFS 118
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAE-----ITRILNHI--MAVGTHALDVGAM----TP 77
K ++N +NFGPQHPAAHGVL L E + R+ HI + GT L G P
Sbjct: 12 KVMKNFTLNFGPQHPAAHGVLRLIVELESENVVRVEPHIGLLHRGTEKLIEGKTYTQALP 71
Query: 78 FFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIP 115
+F + M E A + Y+ + L+IP
Sbjct: 72 YFDRLDYVS--MNVQEHAYSLAVERLYLDSLDIELEIP 107
>sp|Q4FM88|NUOD_PELUB NADH-quinone oxidoreductase subunit D OS=Pelagibacter ubique
(strain HTCC1062) GN=nuoD PE=3 SV=1
Length = 391
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/285 (52%), Positives = 202/285 (70%), Gaps = 20/285 (7%)
Query: 45 AHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAY 104
A + ++F EI RIL+HI+ V T ALDVGA+TP W FEERE +M FYERASG+R+HA Y
Sbjct: 95 AQLIRVMFCEIGRILSHILNVTTQALDVGALTPSLWGFEERETLMTFYERASGSRLHANY 154
Query: 105 VRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNY 164
R GGV D+P+GL +DI +F +F +D++E +LT+NR++ QR D+GIV+ EDAL+Y
Sbjct: 155 FRAGGVHQDLPMGLAEDIGNFCESFPKIIDDLETLLTDNRIFKQRNVDIGIVTKEDALDY 214
Query: 165 GFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQ 219
FSGVM+RGSG+ WDLRK QPYD YE EF IP+G +G+ ++EMR+S+ I++Q
Sbjct: 215 SFSGVMIRGSGVPWDLRKSQPYDCYEQLEFKIPVGKNGDCFDRYLCRIEEMRESVSIIKQ 274
Query: 220 AINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
++KM G +++ D KIS P + ++K GY V YTAVEAPKGE
Sbjct: 275 CLSKMEKGPIKSLDGKISPPPKKDIKQSMEALIHHFKLFTEGYRVDKDEIYTAVEAPKGE 334
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYL+SDGTSKPY+CKI+APGF+HL A++ + KG LAD+ A++
Sbjct: 335 FGVYLISDGTSKPYKCKIRAPGFSHLQAMDYLIKGHMLADVPAVL 379
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
++V DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LA+EK+L I
Sbjct: 31 GEVVEKADPHIGLLHRGTEKLIENKTYMQAVPYFDRLDYVAPMNQEHAFALAIEKILKIN 90
Query: 363 VPLRAKYIRVMFT 375
VP+RA+ IRVMF
Sbjct: 91 VPIRAQLIRVMFC 103
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEI 55
K+I+ + +NFGPQHPAAHGVL L E+
Sbjct: 3 KKIKTLNLNFGPQHPAAHGVLRLILEL 29
>sp|Q163Q5|NUOD_ROSDO NADH-quinone oxidoreductase subunit D OS=Roseobacter denitrificans
(strain ATCC 33942 / OCh 114) GN=nuoD PE=3 SV=1
Length = 407
Score = 308 bits (788), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 154/285 (54%), Positives = 201/285 (70%), Gaps = 23/285 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +LF EI RILNHI+ + T A+DVGA+TP W FEEREK+M FYERASGAR+HAAY RP
Sbjct: 111 IRVLFCEIGRILNHILNITTQAMDVGALTPPLWGFEEREKLMVFYERASGARLHAAYFRP 170
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F +D+++ +LTENR++ QR D+G+V+ ED L YGFS
Sbjct: 171 GGVHQDLPPALIDDIETWAHEFPRVIDDIDGLLTENRIFKQRNADIGVVTEEDILEYGFS 230
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG+ WDLR+ QPY+ Y+ F+F IPIG +G+ ++ M+EMRQSL I+ QAI
Sbjct: 231 GVMVRGSGLAWDLRRAQPYERYDEFDFQIPIGKNGDCYDRYLVRMEEMRQSLSIILQAIA 290
Query: 223 KMPGGEVRTDDM---KISTPSRSEMK---------------GYPVPPGATYTAVEAPKGE 264
K+ E + D + KI+ PSRS+MK G+ VP G Y VEAPKGE
Sbjct: 291 KLRAPEGQGDVLARGKITPPSRSDMKTSMESLIHHFKLYTEGFHVPAGEVYACVEAPKGE 350
Query: 265 FGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
FGVYLV+DGT+KPYR KI+APGF HL A++ + +G LAD+ AII
Sbjct: 351 FGVYLVADGTNKPYRAKIRAPGFLHLQAMDHMSRGHQLADVAAII 395
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV DPHIGLLHRGTEKL+E +TY Q LPYFDRLDYV+ M E + LA+EKL +E
Sbjct: 44 GEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDYVAPMNQEHAWCLAIEKLTGVE 103
Query: 363 VPLRAKYIRVMFT 375
VP RA IRV+F
Sbjct: 104 VPRRASLIRVLFC 116
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E++IRN INFGPQHPAAHGVL L E+
Sbjct: 15 EQKIRNFNINFGPQHPAAHGVLRLVLEL 42
>sp|A9CJA9|NUOD_AGRT5 NADH-quinone oxidoreductase subunit D OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=nuoD PE=3 SV=1
Length = 396
Score = 307 bits (786), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 151/286 (52%), Positives = 203/286 (70%), Gaps = 24/286 (8%)
Query: 48 VLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRP 107
+ +L++EI RIL+HIM V T A+DVGAMTP W FEEREK+M FYERA GARMH+AYVRP
Sbjct: 99 IRVLYSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYVRP 158
Query: 108 GGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS 167
GGV D+P L+DDI + F LD +E +LT+NR++ QR D+G+VS EDA +GF+
Sbjct: 159 GGVHQDLPPELVDDIGKWCDPFLTVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFT 218
Query: 168 GVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAIN 222
GVM+RGSG WDLR+ QPY+ Y + EFDIP+G +G+ +I M+EMR+S++I++Q ++
Sbjct: 219 GVMVRGSGAAWDLRRSQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVD 278
Query: 223 KMPG----GEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKG 263
++ G G V + D K+ P R EMK GY VP G Y AVEAPKG
Sbjct: 279 RLSGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKG 338
Query: 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
EFGVY+V+DG++KPYRCKI+APG+AHL A++ + KG LAD+ A++
Sbjct: 339 EFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVL 384
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA+PYFDRLDYV+ M E ++LAVEKLL +E
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLLGLE 91
Query: 363 VPLRAKYIRVMFT 375
+P+R + IRV+++
Sbjct: 92 IPMRGQLIRVLYS 104
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 28 EKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E +RN INFGP+HP+AHGVL L E+
Sbjct: 3 EHNVRNFTINFGPEHPSAHGVLRLVLEL 30
>sp|B0ULK7|NUOD_METS4 NADH-quinone oxidoreductase subunit D OS=Methylobacterium sp.
(strain 4-46) GN=nuoD PE=3 SV=1
Length = 396
Score = 306 bits (785), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/283 (54%), Positives = 201/283 (71%), Gaps = 24/283 (8%)
Query: 51 LFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGV 110
LF EI R+L+H++ V T A+DVGA+TP W FEEREK+M FYERASGAR+HA Y RPGGV
Sbjct: 102 LFCEIGRLLSHLLNVTTQAMDVGALTPPLWGFEEREKLMIFYERASGARLHANYFRPGGV 161
Query: 111 ALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVM 170
D+P GL+DDI F F +D+++ ++ NR++ QR D+GIV+ + A+ +GFSGVM
Sbjct: 162 HQDLPPGLIDDIEAFCDPFLQVVDDLDALVIGNRIFKQRNVDIGIVTVDAAMAWGFSGVM 221
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGN-----VIGMKEMRQSLRIVEQAINKM- 224
LRGSGI WDLR+ QPY+ YE EFD+P+G +G+ VI M+EMRQS+RI++Q + K+
Sbjct: 222 LRGSGIPWDLRRAQPYEAYEEMEFDVPVGKNGDTYDRQVIRMEEMRQSVRIMKQCLAKLR 281
Query: 225 -PGGE--VRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAPKGEFG 266
P G+ V T D K++ PSR EMK G+ VP G Y AVEAPKGEFG
Sbjct: 282 APDGQGPVTTQDGKVAPPSRREMKRSMEALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFG 341
Query: 267 VYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII 309
VYLV+DGT+KPYRCKI+APGFAHL A++ + +G LAD+ I+
Sbjct: 342 VYLVADGTNKPYRCKIRAPGFAHLQAMDWMCRGHMLADVSCIL 384
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 56/73 (76%)
Query: 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIE 362
+IV +DPHIGLLHRGTEKLIE KTY QA PYFDRLDYV+ M E + LAVEKLL IE
Sbjct: 32 GEIVERVDPHIGLLHRGTEKLIEVKTYLQATPYFDRLDYVAPMNQEHAFCLAVEKLLGIE 91
Query: 363 VPLRAKYIRVMFT 375
VP RAK IR +F
Sbjct: 92 VPRRAKLIRTLFC 104
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 21/29 (72%)
Query: 27 VEKQIRNMVINFGPQHPAAHGVLLLFAEI 55
E IRN INFGPQHPAAHGVL L E+
Sbjct: 2 TEHSIRNFSINFGPQHPAAHGVLRLVLEL 30
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,630,706
Number of Sequences: 539616
Number of extensions: 6812571
Number of successful extensions: 19236
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 15791
Number of HSP's gapped (non-prelim): 2029
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)