Query psy7154
Match_columns 385
No_of_seqs 337 out of 2341
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:33:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0649 NuoD NADH:ubiquinone o 100.0 1.4E-72 2.9E-77 543.9 25.9 289 30-318 86-398 (398)
2 CHL00017 ndhH NADH dehydrogena 100.0 2E-68 4.4E-73 532.3 29.1 288 31-318 83-393 (393)
3 PRK07415 NAD(P)H-quinone oxido 100.0 1.4E-67 3.1E-72 526.4 29.3 288 31-318 83-394 (394)
4 KOG2870|consensus 100.0 4.1E-68 8.9E-73 498.0 21.1 315 4-318 37-452 (452)
5 PRK12322 NADH dehydrogenase su 100.0 3.3E-67 7.2E-72 520.0 27.7 279 30-318 78-366 (366)
6 PRK06075 NADH dehydrogenase su 100.0 6.1E-67 1.3E-71 523.2 29.0 289 30-318 78-392 (392)
7 TIGR01962 NuoD NADH dehydrogen 100.0 3.8E-66 8.3E-71 516.9 29.5 289 30-318 74-386 (386)
8 PRK11742 bifunctional NADH:ubi 100.0 9.8E-65 2.1E-69 527.6 29.3 289 30-318 263-575 (575)
9 PRK13292 trifunctional NADH de 100.0 2.6E-63 5.7E-68 528.0 29.2 288 31-318 477-788 (788)
10 COG3261 HycE Ni,Fe-hydrogenase 100.0 1.3E-60 2.9E-65 459.5 26.8 279 31-320 81-369 (382)
11 PF00346 Complex1_49kDa: Respi 100.0 2.7E-61 5.9E-66 459.9 15.6 248 71-318 1-272 (272)
12 TIGR03295 frhA coenzyme F420 h 100.0 5.4E-47 1.2E-51 382.9 24.6 281 31-327 75-402 (411)
13 COG3259 FrhA Coenzyme F420-red 100.0 1.8E-35 4E-40 290.0 22.5 274 28-320 71-426 (441)
14 PRK10467 hydrogenase 2 large s 99.9 2.6E-25 5.5E-30 230.6 24.2 280 30-320 72-554 (567)
15 PF00374 NiFeSe_Hases: Nickel- 99.9 5.1E-25 1.1E-29 227.1 17.0 282 29-317 33-506 (507)
16 COG3261 HycE Ni,Fe-hydrogenase 99.9 1.7E-25 3.6E-30 216.6 5.6 99 277-384 15-113 (382)
17 PRK12322 NADH dehydrogenase su 99.9 2.5E-25 5.5E-30 221.0 6.0 83 302-384 29-111 (366)
18 CHL00017 ndhH NADH dehydrogena 99.9 3E-25 6.6E-30 222.0 6.0 83 302-384 33-115 (393)
19 PRK10170 hydrogenase 1 large s 99.9 9.5E-23 2.1E-27 212.1 23.1 109 205-320 454-584 (597)
20 COG0649 NuoD NADH:ubiquinone o 99.9 1.2E-24 2.5E-29 211.3 5.7 83 302-384 37-119 (398)
21 TIGR01962 NuoD NADH dehydrogen 99.9 3.1E-24 6.7E-29 215.1 6.1 82 303-384 26-107 (386)
22 PRK13292 trifunctional NADH de 99.9 2.4E-24 5.2E-29 230.3 4.7 99 277-384 411-509 (788)
23 PRK06075 NADH dehydrogenase su 99.9 4.9E-24 1.1E-28 213.9 6.1 82 303-384 30-111 (392)
24 PRK07415 NAD(P)H-quinone oxido 99.9 5.4E-24 1.2E-28 213.1 5.8 83 302-384 33-115 (394)
25 PRK11742 bifunctional NADH:ubi 99.9 1.7E-23 3.6E-28 218.8 6.2 83 302-384 214-296 (575)
26 PRK10170 hydrogenase 1 large s 99.8 2.6E-20 5.7E-25 194.0 6.0 81 304-384 40-120 (597)
27 KOG2870|consensus 99.8 1.6E-20 3.4E-25 177.6 3.7 83 302-384 91-173 (452)
28 PRK10467 hydrogenase 2 large s 99.8 1.7E-19 3.6E-24 187.5 5.8 80 305-385 27-106 (567)
29 TIGR03295 frhA coenzyme F420 h 99.8 1.9E-19 4.2E-24 182.4 5.8 74 311-384 34-107 (411)
30 COG0374 HyaB Ni,Fe-hydrogenase 99.8 6E-17 1.3E-21 163.1 20.6 103 205-318 406-530 (545)
31 PF00374 NiFeSe_Hases: Nickel- 99.7 3.3E-18 7.1E-23 176.7 6.0 67 318-384 1-67 (507)
32 COG0374 HyaB Ni,Fe-hydrogenase 99.7 4.3E-17 9.4E-22 164.1 6.3 74 311-384 31-104 (545)
33 COG3259 FrhA Coenzyme F420-red 99.5 6.5E-15 1.4E-19 145.6 5.7 67 317-383 39-105 (441)
34 PRK00033 clpS ATP-dependent Cl 54.7 9 0.0002 31.3 2.0 37 12-48 25-61 (100)
35 PF02617 ClpS: ATP-dependent C 51.9 7.6 0.00016 30.2 1.1 39 10-48 2-40 (82)
36 PRK05758 F0F1 ATP synthase sub 41.9 39 0.00085 30.0 4.3 95 20-115 48-156 (177)
37 PF01923 Cob_adeno_trans: Coba 38.6 2.7E+02 0.0059 24.4 9.7 81 51-137 51-135 (163)
38 KOG1748|consensus 34.9 28 0.00061 29.8 2.1 35 350-384 92-127 (131)
39 PRK13019 clpS ATP-dependent Cl 33.0 34 0.00073 27.7 2.1 37 12-48 19-56 (94)
40 PRK12449 acyl carrier protein; 30.8 70 0.0015 24.2 3.6 44 341-385 36-80 (80)
41 TIGR01145 ATP_synt_delta ATP s 29.8 48 0.001 29.3 2.9 96 20-116 43-154 (172)
42 PRK13429 F0F1 ATP synthase sub 27.8 78 0.0017 28.2 3.9 95 21-116 49-159 (181)
43 PRK13430 F0F1 ATP synthase sub 25.9 1E+02 0.0022 29.6 4.6 110 21-131 142-267 (271)
44 PRK13428 F0F1 ATP synthase sub 23.2 1.1E+02 0.0023 31.8 4.3 113 21-133 314-443 (445)
45 KOG3078|consensus 23.2 65 0.0014 30.5 2.5 28 23-50 24-52 (235)
46 PRK13436 F0F1 ATP synthase sub 23.1 1.7E+02 0.0038 26.1 5.2 112 20-132 49-176 (179)
47 COG2096 cob(I)alamin adenosylt 22.2 4.8E+02 0.01 23.8 7.7 83 50-138 56-141 (184)
48 PRK09458 pspB phage shock prot 22.1 1.4E+02 0.0031 23.1 3.7 37 112-148 34-74 (75)
No 1
>COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]
Probab=100.00 E-value=1.4e-72 Score=543.86 Aligned_cols=289 Identities=49% Similarity=0.910 Sum_probs=274.6
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeC
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPG 108 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pG 108 (385)
=..|+++..|.+. ++|+.||++++|+.||+|||+|+|.++.|+|+.|+++|+|+.||++++++|.+||.|+|++|.+||
T Consensus 86 y~~AvEkLlgieVPeRAq~IRvm~~EL~RI~sHLl~lg~~~~dlGa~T~f~yaf~eRE~i~~l~E~~tGaRm~~~y~rpG 165 (398)
T COG0649 86 YVLAVEKLLGIEVPERAQYIRVMLSELNRIASHLLWLGTFALDLGAMTPFLYAFREREKIMDLFEAITGARMHHAYFRPG 165 (398)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccHhhhhhHHHHHHHHHHHHHhcccccccccccC
Confidence 3678999999998 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhcccCcccccCCcccccccccCCCC
Q psy7154 109 GVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDG 188 (385)
Q Consensus 109 Gv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~ 188 (385)
||++|+|+++.+.+.++++++++.++++.+++.+|++|+.|++++|++|+++|.+||+|||.+||||++||+||+.||..
T Consensus 166 GV~~DlP~~~~e~i~~f~d~~~~~l~eye~l~~~N~I~~~R~~gVGv~s~e~A~~~G~tGp~lR~SGv~~DvRK~~PY~~ 245 (398)
T COG0649 166 GVRRDLPEGWLELIREFLDYFPKRLDEYEKLLTKNRIWRARLEGVGVLSKEEALEWGVTGPMLRASGVDYDVRKDEPYEA 245 (398)
T ss_pred cccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhcChHHHHhcccceeecHHHHHHhCCcCccccccCCcchhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCccccCCcCCCCcccccC---------------CCC
Q psy7154 189 YENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYP 248 (385)
Q Consensus 189 Y~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~g~~~~~~~~~~~p~~~~~~---------------~~~ 248 (385)
|++++|++|+++.||| ||++||.||++||+||+++||.||+...+.+..+|++..++ ++.
T Consensus 246 Yd~~dFdVpv~~~GD~yaR~lvR~~EmrqS~rIIeQcl~~l~~gP~~~~~~~~~~p~~~~~~~~~e~li~~f~l~~~g~~ 325 (398)
T COG0649 246 YDELDFDVPVGKNGDCYARYLVRMEEMRQSIRIIEQCLDKLPKGPVKNEDPKTTPPSKERMKESMEALIHHFKLVTEGFK 325 (398)
T ss_pred ccccceeccccCCCchhhhhhhhHHHHHHHHHHHHHHHHhCcCCCCcccccccCCCchHHhhhhHHHHhhheeeeccccc
Confidence 9999999999999999 99999999999999999999999988776665556433221 677
Q ss_pred CCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCcccccccc---cccccccchh
Q psy7154 249 VPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAI---IDPHIGLLHR 318 (385)
Q Consensus 249 ~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~~---~dp~ig~~hR 318 (385)
+|+||.|+.||||||++++|+++||+.+|||++||+|||.|+++|+.+++|+.++|.+++ +|++.|...|
T Consensus 326 vP~GE~y~~vE~~kGE~g~yv~SDG~~kPYR~kiR~Psf~~L~~~~~~~~G~~~AD~~ailGS~D~v~gEvDR 398 (398)
T COG0649 326 VPAGEVYAAVEAPKGELGVYIVSDGSNKPYRVKIRAPSFAHLQALPELLKGHRLADLIAILGSIDIVMGEVDR 398 (398)
T ss_pred CCCCceEEeeecCCccEEEEEEeCCCCCceeEEecCCChhHHHHHHHHhCCCchHHHHHHHhccCccCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999874 8999998765
No 2
>CHL00017 ndhH NADH dehydrogenase subunit 7
Probab=100.00 E-value=2e-68 Score=532.28 Aligned_cols=288 Identities=36% Similarity=0.682 Sum_probs=267.0
Q ss_pred hhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCc
Q psy7154 31 IRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109 (385)
Q Consensus 31 ~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGG 109 (385)
..|+++.+|.++ |+|+.+|+|++|+|||+|||+++|.++.|+|+.++++|++++||.+++++|.+||+|+|+++++|||
T Consensus 83 ~~AVE~l~gievP~RA~~iRvi~~ELeRi~sHL~~lg~~~~diG~~t~~~~~~~~RE~il~~~e~itG~R~~~~~~~~GG 162 (393)
T CHL00017 83 VNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGG 162 (393)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcCcccccCceeecc
Confidence 578999999998 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhcccCcccccCCcccccccccCCCCc
Q psy7154 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGY 189 (385)
Q Consensus 110 v~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~Y 189 (385)
|++|+++++.++++++++.+++.++++.+++.+|+++.+|++++|+++.++|.+||++||++||||+++|+|++.||+.|
T Consensus 163 v~~Dl~~~~~~~i~~~l~~~~~~~~~~~~l~~~n~i~~~R~~gvGvl~~~~A~~~g~~GP~aRASGv~~D~R~~~pY~~Y 242 (393)
T CHL00017 163 VAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECY 242 (393)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhcCCEEecCHHHHHHhCCcCceeeeccCchhhccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCccccC-CcCCCCcccc------------c-CCCCCC
Q psy7154 190 ENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPGGEVRTDD-MKISTPSRSE------------M-KGYPVP 250 (385)
Q Consensus 190 ~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~g~~~~~~-~~~~~p~~~~------------~-~~~~~~ 250 (385)
++++|++|+.++||+ ||+.||.||++||+|+|++||+|++...+ ..+.+|++.. . .++.+|
T Consensus 243 ~~l~f~v~~~~~GD~~aR~~VR~~Ei~eSl~II~Q~l~~lp~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 322 (393)
T CHL00017 243 DEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKDSEWNDFEYRFISKKPSPTFELS 322 (393)
T ss_pred CCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCCccccccchhhhhhccceecccccCC
Confidence 999999999999999 99999999999999999999988864321 1122222110 0 023468
Q ss_pred CCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccccc---ccccccccchh
Q psy7154 251 PGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA---IIDPHIGLLHR 318 (385)
Q Consensus 251 ~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~---~~dp~ig~~hR 318 (385)
+|++++.+|||||+++||+++||+++|+|++||+|||.||++++.+++|+.++|+++ ++|||+|+..|
T Consensus 323 ~ge~~~~vEapRGe~~~~l~sdg~~~p~R~kiR~Psf~n~~~l~~~~~G~~iaD~~~i~~S~D~~~~e~DR 393 (393)
T CHL00017 323 KQELYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393 (393)
T ss_pred CceEEEEEEcCCceEEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHCCCeechHHHHhhCcCCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999986 49999999866
No 3
>PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
Probab=100.00 E-value=1.4e-67 Score=526.36 Aligned_cols=288 Identities=36% Similarity=0.697 Sum_probs=267.2
Q ss_pred hhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHccCCcc-CCCeeeC
Q psy7154 31 IRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMH-AAYVRPG 108 (385)
Q Consensus 31 ~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h-~~~~~pG 108 (385)
..|+++.+|.++ |+|+.+|++++|+|||+|||+++|.++.|+|+.++++|++++||.+++++|.+||+|++ +++++||
T Consensus 83 ~~AVE~l~gievP~Ra~~iR~i~~ELeRi~sHL~~~g~~~~diG~~t~~~~~~~~RE~il~~~e~itG~R~~~~~~~~~G 162 (394)
T PRK07415 83 VNAPEKLANIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLINNNYFRIG 162 (394)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccccccccCceeeC
Confidence 589999999998 79999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhcccCcccccCCcccccccccCCCC
Q psy7154 109 GVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDG 188 (385)
Q Consensus 109 Gv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~ 188 (385)
||++|+++++.++++++++.+++.++++.+++.+|+++.+|++++|+++.++|.+||++||++||||+++|+|++.||+.
T Consensus 163 GV~~Dl~~~~~~~i~~~l~~~~~~~~~~~~l~~~n~~~~~R~~gvGvl~~~~A~~~g~~GP~aRASGv~~D~R~~~pY~~ 242 (394)
T PRK07415 163 GVAADLPYGWLEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYEC 242 (394)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHhcCCEeecCHHHHHHhCCcCceeeeccCchhhccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCccccCC-cCCCCccc------------ccC-CCCC
Q psy7154 189 YENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPGGEVRTDDM-KISTPSRS------------EMK-GYPV 249 (385)
Q Consensus 189 Y~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~g~~~~~~~-~~~~p~~~------------~~~-~~~~ 249 (385)
|++++|++|+.+.||+ ||+.||.||++||+|+|++||+|++...+. ...+|++. +.. .++.
T Consensus 243 Y~~l~f~v~v~~~GD~~aR~~VR~~Ei~eSi~II~q~l~~lp~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (394)
T PRK07415 243 YDDFDWDVAWETEGDCLARYRVRIEEMRESVKIIRQACKGIPGGPYENLEAKRMAEGKKSEWNGFDYQYVAKKVAPTFKI 322 (394)
T ss_pred ccccCcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCCcchhhhhhhhhhhccccccccccC
Confidence 9999999999999999 999999999999999999999888643211 11122210 011 2357
Q ss_pred CCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccccc---ccccccccchh
Q psy7154 250 PPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA---IIDPHIGLLHR 318 (385)
Q Consensus 250 ~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~---~~dp~ig~~hR 318 (385)
|+|++++.||||||+++||+++||+++|+|++||+|||.||++++.+++|+.++|+++ ++|||+||..|
T Consensus 323 p~ge~~~~vEapRGel~~~v~sdg~~~p~R~kiR~PSf~n~~~l~~~~~G~~iaD~~~i~~S~D~~~~~~DR 394 (394)
T PRK07415 323 PNGELYVRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQILPHLLKGAKVADIMAILGSIDVIMGSVDR 394 (394)
T ss_pred CCceEEEEEecCCceEEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHCCCeechHHHHhcCcCCCcCCcCC
Confidence 8999999999999999999999999999999999999999999999999999999976 59999999876
No 4
>KOG2870|consensus
Probab=100.00 E-value=4.1e-68 Score=498.01 Aligned_cols=315 Identities=69% Similarity=1.214 Sum_probs=303.0
Q ss_pred ceeccCcccccccccCCCCCCC--cchhhhhhhhhhcCCCChhHHHHH--------------------------------
Q psy7154 4 VVLYPDKEETKWKIINWNDNLV--PVEKQIRNMVINFGPQHPAAHGVL-------------------------------- 49 (385)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~p~a~~lR-------------------------------- 49 (385)
-|.|||++...||---||||.- |+.++.+.+..||||+||+||.+.
T Consensus 37 ~~~yp~~~~~~w~~pp~~~~~~~k~~~~~~~n~~~NfGPqHPaaHGVlRlvleldgE~V~~a~PhiGlLHRgtEKliEyk 116 (452)
T KOG2870|consen 37 KVWYPDRVTDFWKDPPWNDNYTMKPRETGKRNMILNFGPQHPAAHGVLRLVLELDGEVVVKAEPHIGLLHRGTEKLIEYK 116 (452)
T ss_pred ceeccchhhhccCCCCCcCCCcCCCcccchhheeeccCCCCcchhchhheeeeecCceeeecccchhhhhhhHHHHHHHH
Confidence 4789999999999999999998 999999999999999999999865
Q ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHH
Q psy7154 50 --------------------------------------------LLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEER 85 (385)
Q Consensus 50 --------------------------------------------~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~R 85 (385)
+|+.|+.||+||+++++..+.|+|+.|+|.|.|+.|
T Consensus 117 ty~QaLPYfdRlDYvsmM~nE~a~slavEkLlni~vP~RA~yIRvlf~EitRi~nH~malgt~alDvGA~TPffw~FeER 196 (452)
T KOG2870|consen 117 TYTQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIDVPLRAKYIRVLFGEITRIANHIMALGTHALDVGAMTPFFWLFEER 196 (452)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHhhHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhcchhhccccccchhhhhHHH
Confidence 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhc
Q psy7154 86 EKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYG 165 (385)
Q Consensus 86 E~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~ 165 (385)
|++.++.|.++|.|||.++++||||..|++-++.++|.++++.+..+++|+++++..|++|..|+.++|+++.++|++||
T Consensus 197 Ekl~ef~ErvsGaRmha~yiRpGGva~DlPlG~~ddi~~f~~~F~~rldE~e~~~T~NrIw~~R~~~iGiv~aeeAlnwG 276 (452)
T KOG2870|consen 197 EKLYEFYERVSGARMHANYIRPGGVAQDLPLGLMDDIYDFCDQFAERLDELEDMLTRNRIWKQRTIDIGIVTAEEALNWG 276 (452)
T ss_pred HHHHHHHHHhhhhHhHHhhcCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcChHHHhhccccceeeHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCcccccccccCCCCcCCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCccccCCcCCCCc
Q psy7154 166 FSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPS 240 (385)
Q Consensus 166 ~~Gp~~RasGv~~D~R~~~py~~Y~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~g~~~~~~~~~~~p~ 240 (385)
.+||++||||+.+|+||..||.+|++++|++|+++.||| +|++||.||++||.|||+.+|.|++.+++.++-+|+
T Consensus 277 fSG~mlRgsGi~wDlRk~~pYd~yd~~efdv~vgt~GDcydRYl~R~eEMrqSl~II~Qcln~mP~Geik~dd~k~~ppk 356 (452)
T KOG2870|consen 277 FSGVMLRGSGIKWDLRKTQPYDAYDEMEFDVPVGTKGDCYDRYLCRVEEMRQSLRIIQQCLNKMPPGEIKVDDSKVCPPK 356 (452)
T ss_pred CcceeeccCCCCchhhccCcccchhhceeccccccCcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCcccccccccCCcc
Confidence 999999999999999999999999999999999999999 999999999999999999999999999988888888
Q ss_pred ccccC---------------CCCCCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccc
Q psy7154 241 RSEMK---------------GYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADI 305 (385)
Q Consensus 241 ~~~~~---------------~~~~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~ 305 (385)
+++++ ++.+|+|+.|..||||+|+++.++++||+++|||++||.|+|.|+++|.++.+.+.++|+
T Consensus 357 R~~mk~~mE~lihhfk~~t~gf~vppg~tY~avEaPKGEfGvfLisdgS~rPyRckIrapgfahla~l~~m~k~h~lADv 436 (452)
T KOG2870|consen 357 RAEMKESMESLIHHFKLFTEGFQVPPGATYVAVEAPKGEFGVFLISDGSGRPYRCKIRAPGFAHLAALDKMSKRHMLADV 436 (452)
T ss_pred cchhhhhhHHHhhhccccCcccccCCCceeEEeecCCCceeEEEEecCCCCceeeeecCCchHHHHHHHHHHHhhhHHHH
Confidence 77654 688999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc---cccccccchh
Q psy7154 306 VAI---IDPHIGLLHR 318 (385)
Q Consensus 306 V~~---~dp~ig~~hR 318 (385)
|.+ +|...|...|
T Consensus 437 vaIiGt~DIvfGEvDR 452 (452)
T KOG2870|consen 437 VAIIGTLDIVFGEVDR 452 (452)
T ss_pred HHhhccceeeeeccCC
Confidence 875 6777776654
No 5
>PRK12322 NADH dehydrogenase subunit D; Provisional
Probab=100.00 E-value=3.3e-67 Score=520.04 Aligned_cols=279 Identities=38% Similarity=0.698 Sum_probs=265.6
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeC
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPG 108 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pG 108 (385)
=.+|+++.+|.++ ++|+.+|++++|+|||+||++|+|.++.|+|+.++++|++++||.+++++|.+||+|+++++++||
T Consensus 78 ~~~AvE~~~gievp~ra~~iR~i~~EleRi~sHl~~~g~~~~diG~~t~~~~~~~~RE~i~~~~e~~tG~R~~~~~~~~G 157 (366)
T PRK12322 78 YCHAVETMMGLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIG 157 (366)
T ss_pred HHHHHHHHHCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhCccccccccccC
Confidence 3689999999998 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhcccCcccccCCcccccccccCCCC
Q psy7154 109 GVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDG 188 (385)
Q Consensus 109 Gv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~ 188 (385)
||++|+++++.++++++++.+++.++++.+++.+|+++.+|++++|+++.++|.+||++||++||||+++|+|++.||..
T Consensus 158 Gv~~dl~~~~~~~i~~~l~~~~~~~~~~~~~~~~n~~~~~R~~gvGvl~~~~A~~~g~~GP~~RASGv~~D~R~~~pY~~ 237 (366)
T PRK12322 158 GVKWDAPDGWIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSI 237 (366)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhcCCeeecCHHHHHHhCCcCceeeeccCcchhccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCC-CCccccCCcCCCCcccccCCCCCCCCceEEeecCCC
Q psy7154 189 YENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPG-GEVRTDDMKISTPSRSEMKGYPVPPGATYTAVEAPK 262 (385)
Q Consensus 189 Y~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~-g~~~~~~~~~~~p~~~~~~~~~~~~Geg~g~vEapR 262 (385)
|++++|++++.++||+ ||+.||.||++||+|++++||+ |++.++.+ + .+++|+|+++++|||||
T Consensus 238 Y~~l~f~~~~~~~GD~~aR~~VR~~Ei~eSi~iI~q~l~~lp~~G~~~~~~~----~------~~~~p~ge~~~~vEapR 307 (366)
T PRK12322 238 YDRFDFDIPVGSVGDCWDRYVCRMQEIEQSLKIIEQAVEQFPKEGPVLAKVP----K------IIKAPKGEAYVRIESPR 307 (366)
T ss_pred cccCCcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCccccCC----C------CCCCCCceEEEEEecCC
Confidence 9999999999999999 9999999999999999999998 88654311 1 13468899999999999
Q ss_pred CcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccccc---ccccccccchh
Q psy7154 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA---IIDPHIGLLHR 318 (385)
Q Consensus 263 G~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~---~~dp~ig~~hR 318 (385)
|+++||+++||+++|+|++||+|||.||++++.+++|+.++|+++ ++|||+|++.|
T Consensus 308 Ge~~~~v~sdg~~~p~R~kiR~PSf~n~~~l~~~~~G~~iaD~~~i~~S~d~~~~e~Dr 366 (366)
T PRK12322 308 GEIGCYIASDGKKKPYRLKFRRPSFYNLQILPKLLKGENIANLIAILGSIDIVLGEVDG 366 (366)
T ss_pred ceEEEEEEECCCCcEEEEEEeCCCHHHHHHHHHHHCCCeechHHHHhhCcCCCCCcCCC
Confidence 999999999999999999999999999999999999999999986 59999999865
No 6
>PRK06075 NADH dehydrogenase subunit D; Validated
Probab=100.00 E-value=6.1e-67 Score=523.23 Aligned_cols=289 Identities=53% Similarity=0.950 Sum_probs=268.2
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeC
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPG 108 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pG 108 (385)
=.+|+++.+|.++ |+|+++|+|++|+|||+||++|+|.++.|+|+.++++|++++||.+++++|.+||+|+|+++++||
T Consensus 78 ~~~AvE~~~gi~vp~ra~~lR~i~~EleRi~sHl~~lg~l~~~~G~~t~~~~~~~~RE~~~~l~e~itG~R~~~~~~~~G 157 (392)
T PRK06075 78 YCLAVEKLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPG 157 (392)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcCCCcccCceecC
Confidence 3689999999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhcccCcccccCCcccccccccCCCC
Q psy7154 109 GVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDG 188 (385)
Q Consensus 109 Gv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~ 188 (385)
||++|++++++++++++++.+++.++++.+++.+|+++++|++++|+++.++|.+||++||++||||+++|+|++.||..
T Consensus 158 Gv~~dl~~~~~~~i~~~l~~~~~~~~~~~~~~~~n~~~~~R~~gvGvl~~~~A~~~g~~GP~~RASGv~~D~R~~~py~~ 237 (392)
T PRK06075 158 GVRRDLPDGLLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEV 237 (392)
T ss_pred ceecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhcCcEeecCHHHHHHhCCcCceeeccCCcceeccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcC--CCCCccccCCcCCCCcccc---------------cCC
Q psy7154 189 YENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKM--PGGEVRTDDMKISTPSRSE---------------MKG 246 (385)
Q Consensus 189 Y~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l--~~g~~~~~~~~~~~p~~~~---------------~~~ 246 (385)
|++++|++|+.++||+ ||+.||.||++||+|++++| |+|++........+|...+ ..+
T Consensus 238 Y~~l~f~v~v~~~GD~~aR~~VR~~Ei~eSl~ii~q~l~~l~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 317 (392)
T PRK06075 238 YDELDFDVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLRPPPGPVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEG 317 (392)
T ss_pred cCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccccccCCcchhhhhcchHHHhhhccccccc
Confidence 9999999999999999 99999999999999999999 8888654422222221110 012
Q ss_pred CCCCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccccc---ccccccccchh
Q psy7154 247 YPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA---IIDPHIGLLHR 318 (385)
Q Consensus 247 ~~~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~---~~dp~ig~~hR 318 (385)
+++|+|+++++||||||+++||+++||+++|+|++||+|||.||++++.+++|+.++|+++ ++|||.+|..|
T Consensus 318 ~~~p~ge~~~~vEapRGe~~~~v~~dg~~~p~R~kir~PSf~n~~~l~~~~~G~~iaD~~~i~~S~d~~~~~~DR 392 (392)
T PRK06075 318 FRVPAGEVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392 (392)
T ss_pred ccCCCceEEEEEecCCccEEEEEEECCCCcEEEEEEeCCChhHHHHHHHHhCCCChhhHHHHhhCcCccccccCC
Confidence 3568999999999999999999999999999999999999999999999999999999976 59999999865
No 7
>TIGR01962 NuoD NADH dehydrogenase I, D subunit. This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion.
Probab=100.00 E-value=3.8e-66 Score=516.88 Aligned_cols=289 Identities=48% Similarity=0.938 Sum_probs=266.9
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeC
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPG 108 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pG 108 (385)
=.+|+++.+|..+ |+|+++|+|++|+|||+||++|++.++.|+|+.++++|++++||.+++++|.+||+|+|+++++||
T Consensus 74 ~~~AvE~~~gievp~ra~~lR~i~~EleRi~sHl~~l~~~~~dig~~~~~~~~~~~RE~~~~~~e~itG~R~~~~~~~pG 153 (386)
T TIGR01962 74 YCLAVEKLLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIG 153 (386)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHcCCCcccCceecC
Confidence 3689999999998 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhcccCcccccCCcccccccccCCCC
Q psy7154 109 GVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDG 188 (385)
Q Consensus 109 Gv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~ 188 (385)
||++|++++++++++++++.+++.++++.+++.+|+++.+|++++|+++.++|.+||++||++||||+++|+|++.||..
T Consensus 154 Gv~~dl~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~R~~gvGvl~~~~A~~~g~~GP~aRASGv~~D~R~~~py~~ 233 (386)
T TIGR01962 154 GVALDLPENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEG 233 (386)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhCCeeecCHHHHHHhCCcCceeeccCCcceeccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCccccCCcCCCCccc---------------ccCCCC
Q psy7154 189 YENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRS---------------EMKGYP 248 (385)
Q Consensus 189 Y~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~g~~~~~~~~~~~p~~~---------------~~~~~~ 248 (385)
|++++|++++.++||+ ||+.||.||++||+|+|++||+|++......+.+|... ...+.+
T Consensus 234 Y~~l~f~~~~~~~GD~~aR~~VR~~Ei~eSi~ii~q~l~~lp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (386)
T TIGR01962 234 YDEYDFDVPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFR 313 (386)
T ss_pred cCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCCcchhhhccchHHHhhhccccccccC
Confidence 9999999999999999 99999999999999999999988764332111111100 001234
Q ss_pred CCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccccc---ccccccccchh
Q psy7154 249 VPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA---IIDPHIGLLHR 318 (385)
Q Consensus 249 ~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~---~~dp~ig~~hR 318 (385)
+|+|++++.||||||+++||+.+||+++|+|++||+||+.||++++.+++|+.++|+++ ++|||+||+.|
T Consensus 314 ~p~ge~~~~vE~pRGe~~~~v~~dg~~~p~R~kir~Ps~~n~~~l~~~~~G~~iaD~~~i~~S~d~~~~~~dR 386 (386)
T TIGR01962 314 VPAGEVYVPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386 (386)
T ss_pred CCCceEEEEEEcCCceEEEEEEECCCCcEEEEEEeCCCHHHHHHHHHHHCCCeechHHHHHhCcCcCccccCC
Confidence 68899999999999999999999999999999999999999999999999999999976 59999999876
No 8
>PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Probab=100.00 E-value=9.8e-65 Score=527.64 Aligned_cols=289 Identities=36% Similarity=0.659 Sum_probs=267.9
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeC
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPG 108 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pG 108 (385)
=.+|+++.+|.++ |+|+++|+|++|+|||+||++|+|.++.|+|+.+++++++++||.++++++.+||+|+|+++++||
T Consensus 263 ~~~AvE~l~gievP~rA~~iR~il~EleRI~sHl~~lg~l~~d~G~~t~~~~~~~~RE~~~~l~e~itG~R~~~~~~~pG 342 (575)
T PRK11742 263 YVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQKIYDVIEAITGFRMHPAWFRIG 342 (575)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceeeC
Confidence 3689999999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhcccCcccccCCcccccccccCCCC
Q psy7154 109 GVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDG 188 (385)
Q Consensus 109 Gv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~ 188 (385)
||++|+++++.++++++++.+++.++++.+++.+|+++.+|++++|+++.++|.+||++||++||||+++|+|++.||+.
T Consensus 343 Gv~~dl~~~~~~~i~~~l~~~~~~~~~~~~~~~~n~i~~~R~~gvGvl~~~~A~~~g~~GP~~RASGv~~D~R~~~PY~~ 422 (575)
T PRK11742 343 GVAHDLPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARPYSG 422 (575)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhcCcEeecCHHHHHHhCCccceeeeccCcceeccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCccccCCcCC-CCcccc-------------c-CCCC
Q psy7154 189 YENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPGGEVRTDDMKIS-TPSRSE-------------M-KGYP 248 (385)
Q Consensus 189 Y~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~g~~~~~~~~~~-~p~~~~-------------~-~~~~ 248 (385)
|++++|++++.++||+ ||+.||.||++||+|+|++||+|++...+.... +|+... . .++.
T Consensus 423 Y~~l~f~v~v~~~GD~~aR~~VR~~Ei~qSl~iI~q~l~~lp~G~~~~~~~~~~~~~~~~~~~~~e~~i~~f~~~~~~~~ 502 (575)
T PRK11742 423 YENFDFEVPVGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPPKERTLQHIETLITHFLQVSWGPV 502 (575)
T ss_pred ccccCccCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCCcccccccchHHhhhhccccccccc
Confidence 9999999999999999 999999999999999999999888644321111 221100 0 0234
Q ss_pred CCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccccc---ccccccccchh
Q psy7154 249 VPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA---IIDPHIGLLHR 318 (385)
Q Consensus 249 ~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~---~~dp~ig~~hR 318 (385)
+|+|++++++|||||+++||+++||+++|+|++||+||+.||++++.+++|+.++|+++ ++|||+||..|
T Consensus 503 ~p~ge~~~~vEapRGe~~~~v~sdg~~~p~R~kiR~Ps~~n~~~l~~~~~G~~iaD~~~i~~S~d~~~~~~DR 575 (575)
T PRK11742 503 MPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 575 (575)
T ss_pred CCCceEEEEEEcCCceEEEEEEECCCCcEEEEEEeCCChhHHHHHHHHHCCCchhhHHHHhhCcCCCccccCC
Confidence 68999999999999999999999999999999999999999999999999999999876 59999999876
No 9
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=100.00 E-value=2.6e-63 Score=528.01 Aligned_cols=288 Identities=42% Similarity=0.752 Sum_probs=267.5
Q ss_pred hhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCc
Q psy7154 31 IRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109 (385)
Q Consensus 31 ~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGG 109 (385)
.+|+++..|.++ ++|+.+|+|++|+|||+|||+|+|.++.|+|+.++++|++++||.+++++|.+||+|+|+++++|||
T Consensus 477 ~~AVE~l~gievP~RA~~iRvil~ELeRI~sHL~~lg~~~~diG~~t~~~~~~~~RE~i~~l~e~ltG~R~~~~~~rpGG 556 (788)
T PRK13292 477 VNSVETLCGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTFTDREKIFDIVEMITGGRMHPAWFRIGG 556 (788)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhccccccCCceeCc
Confidence 689999999998 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhcccCcccccCCcccccccccCCCCc
Q psy7154 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGY 189 (385)
Q Consensus 110 v~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~Y 189 (385)
|+.|+++++.++++++++.+++.++++.+++.+|+++.+|++++|+++.++|.+||++||++||||+++|+|++.||+.|
T Consensus 557 V~~Dl~~~~~~~i~~~l~~~~~~l~e~~~l~~~n~i~~~R~~gvGvls~e~A~~~G~tGP~aRASGv~~D~Rk~~PY~~Y 636 (788)
T PRK13292 557 VAEDLPEGWKEAVEAFLRWFPGRLKEYEDLLTGNPIFKARLKGVGVITRDEAVEWGISGPNLRACGLAWDLRKKMPYGGY 636 (788)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhhcCCEEecCHHHHHHhCCccceeecccCccccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCccccCCcCCCCcccc---------------cCCCCC
Q psy7154 190 ENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSE---------------MKGYPV 249 (385)
Q Consensus 190 ~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~g~~~~~~~~~~~p~~~~---------------~~~~~~ 249 (385)
++++|++++.++||+ ||+.||.||++||+|++++||.|++......+.+|.+.. ..+..+
T Consensus 637 ~~ldf~v~v~~~GD~~aR~~VR~~Ei~eSl~II~Q~l~~lp~G~~~~~~~~~~~p~~~~~~~~~e~~i~~f~~~~~~~~~ 716 (788)
T PRK13292 637 DRFDFEVPTAEGGDCYARYLVRMEEMRQSLRIVRQAAAGMPGGRWISDDYRYVLPQKRDTLKDIESLIHHFVNVTRGPAP 716 (788)
T ss_pred ccCCcCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCCccccccccchHHhhhhccccccCCCC
Confidence 999999999999999 999999999999999999999888654432222221110 012346
Q ss_pred CCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccccc---ccccccccchh
Q psy7154 250 PPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA---IIDPHIGLLHR 318 (385)
Q Consensus 250 ~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~---~~dp~ig~~hR 318 (385)
|.|+++++||||||+++||+++||+++|+|++||+|||.||++++.+++|+.++|+++ ++|||.|+..|
T Consensus 717 p~Ge~~~~vEapRGE~~~yv~sdg~~~pyR~kIR~PSf~Nl~al~~~~~G~~iaD~~~i~~S~D~v~ge~DR 788 (788)
T PRK13292 717 PKGECYAAIEAPKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPLLSRGWLVADFLAIIGSIDFVLADLDR 788 (788)
T ss_pred CCceEEEEEEcCCceEEEEEEECCCCcEEEEEEeCCCHhHHHHHHHHHCCCeechHHHHhhCcCCCcCCCCC
Confidence 8899999999999999999999999999999999999999999999999999999876 59999998865
No 10
>COG3261 HycE Ni,Fe-hydrogenase III large subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-60 Score=459.49 Aligned_cols=279 Identities=29% Similarity=0.416 Sum_probs=261.0
Q ss_pred hhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCc
Q psy7154 31 IRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGG 109 (385)
Q Consensus 31 ~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGG 109 (385)
..|+++..|.+. ++|+++|+|+.|||||||||++++.++.++|+.++++|.+++||.++++++.+||+|+.++++++||
T Consensus 81 ~~avE~~~~IEvPera~~iRai~~ELERihSHLl~l~~~~~~vg~~t~~~~~~~~RE~vm~~~e~iTG~R~~~G~n~iGG 160 (382)
T COG3261 81 VLAVEDALGIEVPERAQYIRAIILELERIHSHLLNLGLLCHDVGFETGFMQFFRLREKVMRLIELLTGNRVLYGLNVIGG 160 (382)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHHHHHHHHHHHHHhCcceeeccceecc
Confidence 568899999988 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhcccCcccccCCcccccccccCCCCc
Q psy7154 110 VALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGY 189 (385)
Q Consensus 110 v~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~Y 189 (385)
|++|+++..++.+++.++.+++.++++.+.++.+|.+.+|++++|++++++|.+++++||++||||+..|.|.++|+.+|
T Consensus 161 Vr~Di~~~~~~~~~~~i~~~~~e~~~~~e~~l~~p~i~~R~~~vGvi~~~~a~~~~~vGP~aRaSGi~~D~R~d~~~~~y 240 (382)
T COG3261 161 VRRDILESDLEQILELIEDIREEVKEIVEVLLSDPNIEDRLQGVGVLDKEDARKLSAVGPTARASGIADDARIDHPPVYY 240 (382)
T ss_pred eeccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHhccCcccCHHHHHHhccCCchhhccCCcchhhcccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCccccCCcCCCCcccccCCCC-CCCCceEEeecCCCC
Q psy7154 190 ENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMKGYP-VPPGATYTAVEAPKG 263 (385)
Q Consensus 190 ~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~g~~~~~~~~~~~p~~~~~~~~~-~~~Geg~g~vEapRG 263 (385)
++++|++.+.++||+ ||..|+++|+++|+|++|+||+++-... .+. +. .+.|+|.+++|||||
T Consensus 241 ~~l~f~~i~~~eGDvfaR~~VR~~Ei~~S~~lI~~~ld~lp~~~~~~~-----~~~------~~~~~~g~g~~~vEApRG 309 (382)
T COG3261 241 DELPFEVIVRDEGDVFARFLVRIDEIFESLKLIEQALDNLPGGPGGLL-----REK------LELKGHGEGLGRVEAPRG 309 (382)
T ss_pred CCCCccceeccCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc-----ccc------eeecCCcceeeeeecCCC
Confidence 999999999999999 9999999999999999999997541000 011 12 245999999999999
Q ss_pred cccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccccc---ccccccccchhhh
Q psy7154 264 EFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA---IIDPHIGLLHRGT 320 (385)
Q Consensus 264 ~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~---~~dp~ig~~hRG~ 320 (385)
++.||+.++++|+++|++|||||+.||++++.++.|+.++|++. ++|||.+|+.|-+
T Consensus 310 el~h~v~l~~~g~i~r~~irtPS~~Nl~a~~~ml~g~~V~Da~l~~~S~dpc~sctdr~~ 369 (382)
T COG3261 310 ELVHYVKLGDNGKIKRWKIRTPSYANLPALKYMLRGNTVADAPLIIASLDPCYSCTDRVI 369 (382)
T ss_pred cEEEEEEecCCCeEEEEEEcCCcccCHHHHHHHhCCCcccchhhhhhccCcceecceeEE
Confidence 99999999888999999999999999999999999999999876 5999999998865
No 11
>PF00346 Complex1_49kDa: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; InterPro: IPR001135 This entry represents subunit D (NuoD) of NADH-quinone oxidoreductase (1.6.99.5 from EC), and subunit H (NdhH) of NAD(P)H-quinone oxidoreductase (1.6.5.- from EC). NADH-quinone (Q) oxidoreductase is a large and complex redox proton pump, which utilises the free energy derived from oxidation of NADH with lipophilic electron/proton carrier Q to translocate protons across the membrane to generate an electrochemical proton gradient []. Subunit D (NuoD) is a 49kDa polypeptide that appears to be evolutionarily important in determining the physiological function of complex I/NDH-1 [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0048038 quinone binding, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2FUG_V 3M9S_4 3I9V_4 3IAS_4 3IAM_4 2YBB_4.
Probab=100.00 E-value=2.7e-61 Score=459.92 Aligned_cols=248 Identities=49% Similarity=0.953 Sum_probs=201.0
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhh
Q psy7154 71 DVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRT 150 (385)
Q Consensus 71 d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~ 150 (385)
|+|+.|+|+|+|++||++++++|.+||+|+|+++++||||++|+++++.+++.++++.+++.++++.+++.+|+++.+|+
T Consensus 1 D~G~~t~f~~~~~~RE~il~l~e~~tG~R~~~~~~~~GGV~~Dl~~~~~~~i~~~l~~~~~~~~~~~~l~~~n~~~~~R~ 80 (272)
T PF00346_consen 1 DLGAMTPFMYAFREREKILDLFERITGNRMHRSYIRPGGVRRDLPDGWLEDILEFLDEFEKRVEEYEDLLLDNPIFRDRL 80 (272)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHHHHHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHHhcCcccceeeeecCCCccCccccCchhHHHHHHHHHHHHHHHHHHHHHhhccCcchhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccChhhHhhhcccCcccccCCcccccccccCCCCcCCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCC
Q psy7154 151 KDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMP 225 (385)
Q Consensus 151 ~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~Y~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~ 225 (385)
+++|+++.++|.+||++||++||||+++|+|++.||+.|++++|++|+.+.||+ ||+.||.||++||+|++++||
T Consensus 81 ~gvGvls~e~A~~~g~~Gp~~RASGv~~D~R~~~pY~~Y~~l~f~v~~~~~GD~~aR~~VR~~Ei~eSl~iI~q~l~~lp 160 (272)
T PF00346_consen 81 RGVGVLSAEDALDLGAVGPVARASGVPYDLRKDEPYAAYDELDFEVPTETEGDVYARFLVRIEEIRESLRIIEQALDRLP 160 (272)
T ss_dssp SSSS-BSHHHHHHHTT-SSSSGGGT-TTTHHHHSS-SSGGGS-------SSBSHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCEeEECHHHHHHhcCCCcccccCCCcccccccCCCCCcccceeeeeeccCCchHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCC-ccccCCcCCCCccccc---------------CCCCCCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCccc
Q psy7154 226 GGE-VRTDDMKISTPSRSEM---------------KGYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAH 289 (385)
Q Consensus 226 ~g~-~~~~~~~~~~p~~~~~---------------~~~~~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n 289 (385)
.|+ +...+++..+|.+.++ .++++|+||+|+.||||||+++||+++||+++|||+++|+|||.|
T Consensus 161 ~g~~~~~~~~~~~~p~~~~~~~~~e~li~~f~~~~~~~~~p~Ge~~~~vE~prGe~g~~~~sdg~~~p~R~kiR~psf~n 240 (272)
T PF00346_consen 161 EGPIINVDDPKLAPPSKEEVYNSMESLIHHFKLVSEGFKVPAGEAYARVEAPRGELGYYLVSDGSGKPYRVKIRTPSFAN 240 (272)
T ss_dssp -S--SB---TTTS---GGGGGT-HHHHHHHHHHHHS-----SEEEEEEEEETTEEEEEEEEEESSSS-SEEEEE-HHHHT
T ss_pred cCCceeccccccccccchhhccccchhhhcceeccCCccCCcccEEEEecCCCcceEEEEEECCCCcceEEEEeCccHhH
Confidence 988 4555556555554432 156789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCccccccc---ccccccccchh
Q psy7154 290 LAALEKIGKGSFLADIVA---IIDPHIGLLHR 318 (385)
Q Consensus 290 ~~al~~~l~G~~i~D~V~---~~dp~ig~~hR 318 (385)
+++++++++|+.++|+++ ++|||+||..|
T Consensus 241 ~~~l~~~~~G~~laD~~~i~~Sld~~~~e~DR 272 (272)
T PF00346_consen 241 LQALPEMLRGNRLADVVAIIGSLDPCMGEVDR 272 (272)
T ss_dssp TTTHTTTTTTS-SGGGTHHHHTT---HHHHH-
T ss_pred HHHHHHHcCCCChhHHHHHHhccCcccCCCCC
Confidence 999999999999999987 49999999876
No 12
>TIGR03295 frhA coenzyme F420 hydrogenase, subunit alpha. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein is a member of the Nickel-dependent hydrogenase superfamily represented by Pfam model, pfam00374.
Probab=100.00 E-value=5.4e-47 Score=382.93 Aligned_cols=281 Identities=17% Similarity=0.148 Sum_probs=241.6
Q ss_pred hhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhh--chHHH-----HHHHHHHHHHHHHHHHHHccCCccC
Q psy7154 31 IRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDV--GAMTP-----FFWLFEEREKMMEFYERASGARMHA 102 (385)
Q Consensus 31 ~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~--G~~~~-----~~~~~~~RE~~~~l~e~l~G~R~h~ 102 (385)
.+|+++.+|+.+ ++|+.+|+|+.|+|||+||+++++..++|+ |..+. ++|++++||.++++++.+||+|+|+
T Consensus 75 ~~AvE~a~gi~vp~ra~~lR~l~~e~~ri~sHll~~~~~~~d~~~g~~~~~~~~~~~~~~~~Re~~~~i~e~i~G~r~h~ 154 (411)
T TIGR03295 75 VEAIEDSIDCEVPKDGLLLRELTGCANRLHSHALHHFLIAPDFIPETDTKLVREVIKRIQRMRKIGQTVVDIVGGEGIHP 154 (411)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 589999999998 799999999999999999999998888898 66544 4799999999999999999999999
Q ss_pred CCeeeCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhc--ccCcccccCCccccc
Q psy7154 103 AYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYG--FSGVMLRGSGIKWDL 180 (385)
Q Consensus 103 ~~~~pGGv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~--~~Gp~~RasGv~~D~ 180 (385)
++++||||++|++++++++++++++.+++.++++.+.+.. .+.+|+.|+|+++.+.+.+++ .+||.. ++|.++|.
T Consensus 155 ~~~~pGGv~~d~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~g~g~~~~~~~~~~~~~a~G~~~-~~~~~~d~ 231 (411)
T TIGR03295 155 PNIRIGGMYYNITEQAKSRLYYLLKQYEPLAIEHVEFMIA--LIENGKTEVGIPEKLGWHDQPYIATHPTY-GDRPKIDP 231 (411)
T ss_pred CCeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccCcccceeccccccCCCcccc-CCCCCCCH
Confidence 9999999999999999999999999999999999998874 688999999999999998886 789987 88899999
Q ss_pred cc---ccCCCCcCCCCccc------ccC-------------------CCCcc-----hHHHHHHHHHHHHHHHHHcCC-C
Q psy7154 181 RK---VQPYDGYENFEFDI------PIG-------------------THGNV-----IGMKEMRQSLRIVEQAINKMP-G 226 (385)
Q Consensus 181 R~---~~py~~Y~~~~f~~------~~~-------------------~~GD~-----vR~~Ei~~Si~ii~q~L~~l~-~ 226 (385)
|+ ..||+.|++++|.. |.. ..+|+ ||+.|+.+|+++|+|++++++ +
T Consensus 232 ~~~~e~~~~~~Y~~~~~~~~s~~k~p~~~g~~~~vGplAR~~~~~~~~~~~~~aR~~aR~~E~~~s~~~i~~~l~~~~~~ 311 (411)
T TIGR03295 232 DRVTEVSPYNWYDDAEYAMQACTTIPLYDGRPVEVGPRARMVKFKNFKEKGAMAIHIARAMENPDALYRAIEILDELDCN 311 (411)
T ss_pred HHceecccchhcccCCcCCCeeeeceeECCceEEecHHHHHHhcchhhhccccccHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 76 57999999988765 222 34566 999999999999999999985 5
Q ss_pred CCccccCCcCCCCcccccCCCCCCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccc-
Q psy7154 227 GEVRTDDMKISTPSRSEMKGYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADI- 305 (385)
Q Consensus 227 g~~~~~~~~~~~p~~~~~~~~~~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~- 305 (385)
++..... .| ....|+|+|.+|||||+|+|||.++ +|++.+++|++||+|||++|+.+++|..++|.
T Consensus 312 ~~~~~~~----~~--------~~~~~~g~g~vEApRG~L~H~~~i~-~G~i~~y~i~~PT~~N~~~le~~l~G~~~~~~~ 378 (411)
T TIGR03295 312 GKVRADE----IE--------QGDGKLGWGAHEAPRGCDVHMARVK-DGKIQEYTALVPTTWNFPTCGKATEGAPWQYAE 378 (411)
T ss_pred CCccccC----CC--------CCCCceeEEEEEcCCcceeEEEEEc-CCEEeEEeEECCcccccHHHHHHHHhhhhhchh
Confidence 5533210 01 0113479999999999999999997 68999999999999999999999999988775
Q ss_pred --ccccccccccchhhhhhhhccC
Q psy7154 306 --VAIIDPHIGLLHRGTEKLIEYK 327 (385)
Q Consensus 306 --V~~~dp~ig~~hRG~Ek~~e~r 327 (385)
+.++|||++|+.|-++-=.+++
T Consensus 379 ~iirS~DPC~sC~~h~~~~~~~~~ 402 (411)
T TIGR03295 379 VIMRAYDPCVSCATHVIVVDEEKK 402 (411)
T ss_pred hEeecCCccHhhhhhEEEeecCCC
Confidence 4569999999998765433433
No 13
>COG3259 FrhA Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.8e-35 Score=289.97 Aligned_cols=274 Identities=18% Similarity=0.201 Sum_probs=207.4
Q ss_pred hhhhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhh-hhh-c-----------hHHHHHHHHHHHHHHHHHHH
Q psy7154 28 EKQIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHA-LDV-G-----------AMTPFFWLFEEREKMMEFYE 93 (385)
Q Consensus 28 ~~~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~-~d~-G-----------~~~~~~~~~~~RE~~~~l~e 93 (385)
+.-.+|+|.+||+.+ +.+++||.||+-+++|+||++|++.|+ +|+ + ..++++.++++|+.+|.+++
T Consensus 71 LAs~eA~e~a~gveip~~~~~LREl~~~g~~i~SHALh~y~La~PDfl~~~d~~~~~i~~~~e~~k~~i~Lr~~gq~Iv~ 150 (441)
T COG3259 71 LASVEAAEAALGVEIPEEAEKLRELLNIGNIIESHALHLYFLAAPDFLGPPDADPGMIDEYPELAKEAIRLRKIGQTIVE 150 (441)
T ss_pred HHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHhhhHHHHHHhhCccccCCcccChhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999 799999999999999999999997664 564 3 23589999999999999999
Q ss_pred HHccCCccCCCeeeCccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHh-----hccccccChhhHhhhcccC
Q psy7154 94 RASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQR-----TKDVGIVSAEDALNYGFSG 168 (385)
Q Consensus 94 ~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R-----~~~vG~l~~~~a~~~~~~G 168 (385)
.++|+.+||.+.+||||+++++++.++++.+.++...+..++..+++. .+.+| ...+|.++..+ .+...+
T Consensus 151 ~lGGk~IHp~~~~pGG~~~~lsee~~~~l~~~ake~~~lA~~~~e~~~---~l~er~~~~~~~~~g~v~~g~--~~~~y~ 225 (441)
T COG3259 151 VLGGKAIHPVNAVPGGVAKNLSEEAREKLLDRAKEALELADRTVELFK---ELLERMEEEESYHLGLVKKGD--HPEPYD 225 (441)
T ss_pred HhcCCCCCCCccCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhcccceecccCCCc--cccccc
Confidence 999999999999999999999999999998887777766666655553 23333 33457666553 345667
Q ss_pred cccccCCc--ccccc--c------ccCCCC-----cCCCC---cccc---cCC--------------------CC-c-c-
Q psy7154 169 VMLRGSGI--KWDLR--K------VQPYDG-----YENFE---FDIP---IGT--------------------HG-N-V- 204 (385)
Q Consensus 169 p~~RasGv--~~D~R--~------~~py~~-----Y~~~~---f~~~---~~~--------------------~G-D-~- 204 (385)
...|+.|. +||.- + ..||++ |.+++ |.+. ..+ .| . +
T Consensus 226 ~~~~~~d~~~~fd~~~y~d~i~E~~~~~s~~K~~y~k~lG~p~y~vg~larl~~~~~~~~p~Ar~~~~e~~~~~g~~~~~ 305 (441)
T COG3259 226 GSIRAYDDREKFDPDEYEDIIPESVYPYSYLKHPYYKDLGYPDYRVGPLARLDGCPVMVGPRARELYEENFEELGGTHSF 305 (441)
T ss_pred ceEEeccccccCCHHHHhhhcccccccchhhccccccccCCcccccccchhhcCCccccCcHHHHHHHHhHHhhCCccHH
Confidence 77787772 12221 1 233332 33232 1110 111 11 1 1
Q ss_pred ----hHHHHHHHHHHHHHHHHHcCC-CCCccccCCcCCCCcccccCCCCCCCCceEEeecCCCCcccEEEEEcCCCCeeE
Q psy7154 205 ----IGMKEMRQSLRIVEQAINKMP-GGEVRTDDMKISTPSRSEMKGYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYR 279 (385)
Q Consensus 205 ----vR~~Ei~~Si~ii~q~L~~l~-~g~~~~~~~~~~~p~~~~~~~~~~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r 279 (385)
+|+.|+..+++.+.++|+++. .|+++.+ ..+..|+|+|++|||||+|+|+|.+|.+|++..
T Consensus 306 ~~h~ARaiEi~~~~e~a~~lL~~ld~~~k~r~~--------------~e~~~geGvg~vEAPRGtlvH~~~vdenG~I~~ 371 (441)
T COG3259 306 AYHLARAIEILYALERAIELLDELDITGKVRAD--------------VEPKAGEGVGVVEAPRGTLVHHYRVDENGRIKK 371 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCcccc--------------ccCCCCceeEEEecCcceEEEEEEEcCCCeEEE
Confidence 999999999999999999865 4444332 134589999999999999999999998899999
Q ss_pred EEEeCCCcccHHHHHHhhcCC--cccc------------cccccccccccchhhh
Q psy7154 280 CKIKAPGFAHLAALEKIGKGS--FLAD------------IVAIIDPHIGLLHRGT 320 (385)
Q Consensus 280 ~~ir~Ps~~n~~al~~~l~G~--~i~D------------~V~~~dp~ig~~hRG~ 320 (385)
+++++||.||.++|++++.+. ...+ .|+.||||++|+.+-+
T Consensus 372 ~niIvaT~~N~~ame~~v~~~a~~~~~~~~~~~~~~~E~viRAyDPC~sCatHvv 426 (441)
T COG3259 372 ANIIVATTFNVPAMEKAVRGVAERYIETVPEGLLNLVEMVIRAYDPCLSCATHVV 426 (441)
T ss_pred EEEEeecccchHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcCchHHHHHHHh
Confidence 999999999999999998772 1222 2667999999988766
No 14
>PRK10467 hydrogenase 2 large subunit; Provisional
Probab=99.94 E-value=2.6e-25 Score=230.63 Aligned_cols=280 Identities=16% Similarity=0.150 Sum_probs=175.9
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHH-HhhhhhchHHHH-----------------------------
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVG-THALDVGAMTPF----------------------------- 78 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~-~l~~d~G~~~~~----------------------------- 78 (385)
-.+|+++++|..+ |.|+.+|.|++|+|||+||++|++ ..++|++..+.+
T Consensus 72 ~~~AlE~a~gi~vP~~A~~iR~l~~e~eri~sHl~hfy~l~~~D~~~~t~~l~a~~e~~~~l~~~~~~~p~~~~~~~~~v 151 (567)
T PRK10467 72 SVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITSALQADPTKASAMLKGVSTWHLNSAEEFTKV 151 (567)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHH
Confidence 3689999999988 799999999999999999999888 446776553222
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHccCCccCCCeeeCccccC-----
Q psy7154 79 ----------------------------------------FWLFEEREKMMEFYERASGARMHAAYVRPGGVALD----- 113 (385)
Q Consensus 79 ----------------------------------------~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~d----- 113 (385)
..++..+.++.+++..++|+--|+++++||||.++
T Consensus 152 ~~~~~~~~~~g~l~~f~~~y~g~~~y~l~~e~n~~~~~hYl~Al~~~r~~~~~~aifgGK~PH~~~~vpGGvt~~~~~~~ 231 (567)
T PRK10467 152 QNKIKDLVASGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDG 231 (567)
T ss_pred HHHHHHHHhccccCcccCCCCCCccccCChhHhHHHHHHHHHHHHHHHHHHHheEEeecCCCCCCCeecCcccccccccc
Confidence 25777788888888999999999999999999998
Q ss_pred ---CChhHHHHHHHHHHHHHHHHHHHH--HHH--h-hChHHHH------hhccccccChh-hHhhh-cccCcccccCC--
Q psy7154 114 ---IPIGLLDDIYHFISTFSARLDEVE--DML--T-ENRLWIQ------RTKDVGIVSAE-DALNY-GFSGVMLRGSG-- 175 (385)
Q Consensus 114 ---l~~~~~~~i~~~l~~~~~~~~e~~--~~~--~-~~~~~~~------R~~~vG~l~~~-~a~~~-~~~Gp~~RasG-- 175 (385)
++.+.+.+++..++.+.+.++..+ ++. . -.+.+.+ ++-..|-.+.. .-..+ --.|...-+.=
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~fve~~~~~d~~~~~~~~~~~~~~G~g~~~fls~g~~~~~~~~~~~~~~~Gv~~~g~~~~ 311 (567)
T PRK10467 232 LGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLST 311 (567)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHhCCCcceEEEcCCccCCCCCCceecCCeEEECCcccc
Confidence 447777777777776665554432 111 0 0112221 11112211100 00000 00111110000
Q ss_pred -cccccc----------cc------------cC-----------------CCC-----cCCCCcccc-c-----C-CCCc
Q psy7154 176 -IKWDLR----------KV------------QP-----------------YDG-----YENFEFDIP-I-----G-THGN 203 (385)
Q Consensus 176 -v~~D~R----------~~------------~p-----------------y~~-----Y~~~~f~~~-~-----~-~~GD 203 (385)
.++|.. .. +| |++ |+...+++. + . ..|+
T Consensus 312 ~~~~D~~~~~~~~~~I~E~v~~swY~~~~~~hP~~g~T~P~~~~~~~~~~YSW~KaPRy~g~~~EvGPLAR~lv~~~~~~ 391 (567)
T PRK10467 312 YRPITSHSDEYLIKGIQESAKHAWYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGR 391 (567)
T ss_pred eeccCcccccccccceEEecceecccCCCCCCCCCCCccCCCCCCCCCCCcccccCcccCCcccccCHHHHHHHHhhccC
Confidence 011111 01 12 221 222222210 0 0 0010
Q ss_pred ---------------------------------c-hHHHHHHHHHHHH----HHHHHcCCCCCccccCCcCCCCcccccC
Q psy7154 204 ---------------------------------V-IGMKEMRQSLRIV----EQAINKMPGGEVRTDDMKISTPSRSEMK 245 (385)
Q Consensus 204 ---------------------------------~-vR~~Ei~~Si~ii----~q~L~~l~~g~~~~~~~~~~~p~~~~~~ 245 (385)
. +|+.|....++.+ .++++.++.|++.... ++.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~gR~~AR~~e~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~----- 462 (567)
T PRK10467 392 ESTQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTFV----KPN----- 462 (567)
T ss_pred cchhhhhhHHHHHhhhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC----cCc-----
Confidence 0 7788877666665 3566667666533211 110
Q ss_pred CCC-CCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccH---------HHHHHhhcCCcccc---------cc
Q psy7154 246 GYP-VPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHL---------AALEKIGKGSFLAD---------IV 306 (385)
Q Consensus 246 ~~~-~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~---------~al~~~l~G~~i~D---------~V 306 (385)
++ ..+++|+|.+|||||+|+||+++++ |+|.+++|++||+||+ .+++.++.|+.++| ++
T Consensus 463 -~~~~~~~~G~G~~EApRG~L~Hwi~i~~-gkI~nyqii~PTtwN~sPRD~~g~~g~~e~aL~G~~i~d~~~P~Ev~~ii 540 (567)
T PRK10467 463 -IPATGEFKGVGFLEAPRGMLSHWMVIKD-GIISNYQAVVPSTWNSGPRNFNDDVGPYEQSLVGTPVADPNKPLEVVRTI 540 (567)
T ss_pred -CCCCcceeEEEEEEccCcceEEEEEEcC-CeEEEEEEECCCcccCCccccCCCcchHHHHhCCCccCCCCCcceeeeee
Confidence 00 1234699999999999999999986 8999999999999999 89999999999888 56
Q ss_pred cccccccccchhhh
Q psy7154 307 AIIDPHIGLLHRGT 320 (385)
Q Consensus 307 ~~~dp~ig~~hRG~ 320 (385)
.++|||++|+-+=+
T Consensus 541 rSfDPC~aCavHv~ 554 (567)
T PRK10467 541 HSFDPCMACAVHVV 554 (567)
T ss_pred EecccccccceeEE
Confidence 78999999975543
No 15
>PF00374 NiFeSe_Hases: Nickel-dependent hydrogenase; InterPro: IPR001501 Hydrogenases are enzymes that catalyze the reversible activation of hydrogen and which occur widely in prokaryotes as well as in some eukaryotes. There are various types of hydrogenases, but all of them seem to contain at least one iron-sulphur cluster. They can be broadly divided into two groups: hydrogenases containing nickel and, in some cases, also selenium (the [NiFe] and [NiFeSe] hydrogenases) and those lacking nickel (the [Fe] hydrogenases). The [NiFe] and [NiFeSe] hydrogenases are heterodimer that consist of a small subunit that contains a signal peptide and a large subunit. All the known large subunits seem to be evolutionary related []; they contain two Cys-x-x-Cys motifs; one at their N-terminal end; the other at their C-terminal end. These four cysteines are involved in the binding of nickel []. In the [NiFeSe] hydrogenases the first cysteine of the C-terminal motif is a selenocysteine which has experimentally been shown to be a nickel ligand [].; GO: 0016151 nickel ion binding; PDB: 1E3D_D 3USC_M 3USE_L 3UQY_M 3RGW_L 1CC1_L 1YQ9_I 2FRV_D 1FRV_B 3MYR_F ....
Probab=99.93 E-value=5.1e-25 Score=227.07 Aligned_cols=282 Identities=20% Similarity=0.228 Sum_probs=163.9
Q ss_pred hhhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhh-hhh-c-----------------------------hH-
Q psy7154 29 KQIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHA-LDV-G-----------------------------AM- 75 (385)
Q Consensus 29 ~~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~-~d~-G-----------------------------~~- 75 (385)
.-.+|+++++|+.+ +.|++||.|+.+++|||||++|++.|. +|+ + +.
T Consensus 33 a~~~A~E~a~gi~~p~~a~~~R~l~~~~~~i~~H~~hfy~l~~~D~~~~~~al~adp~~~~~~a~~~s~~~~~~~~~~~~ 112 (507)
T PF00374_consen 33 ASVRAVEDALGIEVPENARLLRNLILEAERIHDHLLHFYHLHAPDFVDVVSALKADPKKAAALAQSISDWPKSSAGYFKA 112 (507)
T ss_dssp HHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTS-TGGGGGS-HHHHHHHHHHHSSSSBGSHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhccccccccHHHHHHHHHhcCCCccccHHHHHH
Confidence 34789999999998 799999999999999999999999774 341 1 00
Q ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChh
Q psy7154 76 --------------------------------------TPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIG 117 (385)
Q Consensus 76 --------------------------------------~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~ 117 (385)
+=-..++..+.++.+++..++|+--||++++||||...++-.
T Consensus 113 vq~kl~~~v~~g~lg~f~~~y~~h~~y~l~pe~nl~~v~hYleAL~~qr~~~ei~AIfGGK~PH~s~~vpGGVt~~~~~~ 192 (507)
T PF00374_consen 113 VQDKLKKFVESGQLGPFANGYWGHPDYKLPPEVNLIAVAHYLEALEIQRKAHEIMAIFGGKWPHPSSIVPGGVTCAPNLD 192 (507)
T ss_dssp HHHHHHHHHHTTHHGGGTTHTTT-TT--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSS-SSEETTEESSGCGGS
T ss_pred HHHHHHHHhccCCCCccCCCCCCCccccCChhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCccCCCcCCCCCCc
Confidence 013358999999999999999999999999999998877654
Q ss_pred H-----HHHHHHHHHHHHHHHHHHH--HHHhhChHHHH--hhcccc--------ccChhh---HhhhcccCcc-cccCC-
Q psy7154 118 L-----LDDIYHFISTFSARLDEVE--DMLTENRLWIQ--RTKDVG--------IVSAED---ALNYGFSGVM-LRGSG- 175 (385)
Q Consensus 118 ~-----~~~i~~~l~~~~~~~~e~~--~~~~~~~~~~~--R~~~vG--------~l~~~~---a~~~~~~Gp~-~RasG- 175 (385)
. +.+++.+++++.+.++..+ |++.-...+.+ ...|+| .+.... ...+...+.+ ..++-
T Consensus 193 ~~~~erl~~~~~~~~e~~~Fi~~~y~pDv~~i~~~y~d~~~~~G~~~~nfls~G~fp~~~~~~~~~~~~~~Gvi~~g~l~ 272 (507)
T PF00374_consen 193 DINMERLAEFKSLLEEVRDFIENVYLPDVLAIASFYKDWKYGGGVGDGNFLSYGDFPDDNDYDGGGRLFPPGVIINGDLS 272 (507)
T ss_dssp HB-HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSSGGCGTEEEEEEEEESSTTTCGGGEEEEEEEEETTETT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCccceeeccCCCcccccCCCceeccCeeEECCccc
Confidence 3 4455555555544443211 11111111111 111221 111110 0011111111 11110
Q ss_pred --ccccccc---ccCCCCcC--C-----------------------------------CCccc-cc------CCCC----
Q psy7154 176 --IKWDLRK---VQPYDGYE--N-----------------------------------FEFDI-PI------GTHG---- 202 (385)
Q Consensus 176 --v~~D~R~---~~py~~Y~--~-----------------------------------~~f~~-~~------~~~G---- 202 (385)
.++|..+ ...|++|+ + ..+++ |+ ...|
T Consensus 273 ~~~~~D~~~I~E~V~hSwY~~~~~~~~hP~~G~T~p~y~~~~d~~~kYSW~KaPRy~g~~~EVGPLAR~~v~~~~~~~~~ 352 (507)
T PF00374_consen 273 EVHPFDPNKITEDVTHSWYKYGDESGLHPWDGETEPDYTGFKDKDGKYSWIKAPRYDGKPMEVGPLARLLVAYAKGHPLI 352 (507)
T ss_dssp CEB---GGGEEEE-TTSSBSTSSTSTBEGGG---EB-SCCTTBTTSB-BSS-EEEETTB--BESHHHHHHHHHHTTHHHH
T ss_pred cccccccccceeccCccccccCCCcCCCCccccccccccccccccccccccceeeECCCCceeCHHHHHHHhhhcCChhH
Confidence 0233332 33445555 1 00111 00 0000
Q ss_pred ------------------cc------hHHHHHHHHHHHHHHHHHcC----CCCCccccCCcCCCCcccccCCCCCCCCce
Q psy7154 203 ------------------NV------IGMKEMRQSLRIVEQAINKM----PGGEVRTDDMKISTPSRSEMKGYPVPPGAT 254 (385)
Q Consensus 203 ------------------D~------vR~~Ei~~Si~ii~q~L~~l----~~g~~~~~~~~~~~p~~~~~~~~~~~~Geg 254 (385)
.+ +|+.|+..+++.+.++++++ ..|+..........|. ..+.+|+|
T Consensus 353 ~~~~~~~~~~~~~~~~~~~s~l~R~~AR~iE~~~~~~~~~~~l~~l~~~i~~Gd~~~~~~~~~~~~------~~P~~~~G 426 (507)
T PF00374_consen 353 KELVDEFLKKLGLPPEALFSTLGRHLARAIEAALAAERMEEWLDELLANIKSGDKATFNIPPWDPS------TWPKEGEG 426 (507)
T ss_dssp HHHHHHHHHHHTCHGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH--B-BTTBSGG------GS-SEEEE
T ss_pred HHHHHHHHHHhcCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccccccc------cCCCcceE
Confidence 11 89999998887776666553 3343111100000010 01246899
Q ss_pred EEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHH---------HHHHhhcCCccccc---------ccccccccccc
Q psy7154 255 YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLA---------ALEKIGKGSFLADI---------VAIIDPHIGLL 316 (385)
Q Consensus 255 ~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~---------al~~~l~G~~i~D~---------V~~~dp~ig~~ 316 (385)
+|.+|||||.|+||++.++ |+|.+++|++||+||++ ++|+++.|..+.|. |.+||||++|+
T Consensus 427 vG~~EApRG~L~H~~~i~~-G~I~nyqiIvPTtwN~~Prd~~g~~g~~E~aLig~~v~d~~~p~ei~r~irSfDPCisCa 505 (507)
T PF00374_consen 427 VGLVEAPRGALGHWIVIED-GKIKNYQIIVPTTWNASPRDENGQPGPYEQALIGTPVADPENPLEILRTIRSFDPCISCA 505 (507)
T ss_dssp EEEEEETTEEEEEEEEEET-TEEEEEEEEEHHHHHHS---TT----HHHHHHTT-B-SSTTS-HHHHHHHHHT--BHHHH
T ss_pred EEEEEecccceEEEEEECC-CeEEEEEEeCCCccchhhhhhccccHHHHHHhcCCCccccccHHHHHHHhhcCCcccccc
Confidence 9999999999999999975 99999999999999997 58999999877773 45799999996
Q ss_pred h
Q psy7154 317 H 317 (385)
Q Consensus 317 h 317 (385)
-
T Consensus 506 v 506 (507)
T PF00374_consen 506 V 506 (507)
T ss_dssp H
T ss_pred C
Confidence 4
No 16
>COG3261 HycE Ni,Fe-hydrogenase III large subunit [Energy production and conversion]
Probab=99.91 E-value=1.7e-25 Score=216.56 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=91.4
Q ss_pred eeEEEEeCCCcccHHHHHHhhcCCcccccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHH
Q psy7154 277 PYRCKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVE 356 (385)
Q Consensus 277 ~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE 356 (385)
|.+..+..|..+.+. .-+|.|+.+|..+||.||||||+++|++|.++..+++||||+||.+|++||++|+|
T Consensus 15 P~H~gl~EP~~frl~---------v~GE~Iv~~di~~~y~hRGIEki~~g~~~~~a~~LaERVcGicS~aH~~~f~~avE 85 (382)
T COG3261 15 PVHPGLIEPGHFRLF---------VDGEKIVDADIRLGYVHRGIEKIAEGLPYNKALFLAERVCGICSFAHAVAFVLAVE 85 (382)
T ss_pred CCCccccCCceEEEE---------eCCceEEEEEEEEEEeehhhHHHhcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 667777777766654 24588899999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCChhHHHHHHHHHHHHHHhhhc
Q psy7154 357 KLLNIEVPLRAKYIRVMFTFYQWAAQVL 384 (385)
Q Consensus 357 ~~~gi~vp~ra~~~R~i~~eler~~~hl 384 (385)
+++|||+|+||+|+|.|+.||||++|||
T Consensus 86 ~~~~IEvPera~~iRai~~ELERihSHL 113 (382)
T COG3261 86 DALGIEVPERAQYIRAIILELERIHSHL 113 (382)
T ss_pred HHhCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998
No 17
>PRK12322 NADH dehydrogenase subunit D; Provisional
Probab=99.91 E-value=2.5e-25 Score=221.05 Aligned_cols=83 Identities=47% Similarity=0.705 Sum_probs=80.8
Q ss_pred ccccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHh
Q psy7154 302 LADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAA 381 (385)
Q Consensus 302 i~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~ 381 (385)
-+|.|..++|++||+|||+||++|+++|.|++++++||||+||++|++|||+|||+++|++||+||+|+|+|++||||++
T Consensus 29 ~GE~I~~~e~~~Gy~HRG~Ek~~e~~~~~~~~~l~eRi~g~~s~~h~~a~~~AvE~~~gievp~ra~~iR~i~~EleRi~ 108 (366)
T PRK12322 29 DGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYCHAVETMMGLEVPERAEYLRVIAMELGRIA 108 (366)
T ss_pred cCCEEEEEEEecchhhhHHHHHhcCCCHHHhhhhcCccccccHhHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHH
Confidence 35788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy7154 382 QVL 384 (385)
Q Consensus 382 ~hl 384 (385)
|||
T Consensus 109 sHl 111 (366)
T PRK12322 109 SHL 111 (366)
T ss_pred HHH
Confidence 998
No 18
>CHL00017 ndhH NADH dehydrogenase subunit 7
Probab=99.91 E-value=3e-25 Score=222.04 Aligned_cols=83 Identities=42% Similarity=0.553 Sum_probs=81.3
Q ss_pred ccccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHh
Q psy7154 302 LADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAA 381 (385)
Q Consensus 302 i~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~ 381 (385)
.+|.|+.+||++||+|||+||++|+++|.|++++++|+||+||++|++|||+|||+++|++||+||+|+|+|++||||++
T Consensus 33 ~GE~I~~~e~~~GY~HRGiEKl~E~r~~~q~i~l~eRi~~~~~~~~~~~y~~AVE~l~gievP~RA~~iRvi~~ELeRi~ 112 (393)
T CHL00017 33 DGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRIA 112 (393)
T ss_pred cCCEEEEEeeecccchHHHHHHHccCCHHHcCeeeeecccccHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy7154 382 QVL 384 (385)
Q Consensus 382 ~hl 384 (385)
|||
T Consensus 113 sHL 115 (393)
T CHL00017 113 SHL 115 (393)
T ss_pred HHH
Confidence 998
No 19
>PRK10170 hydrogenase 1 large subunit; Provisional
Probab=99.91 E-value=9.5e-23 Score=212.13 Aligned_cols=109 Identities=15% Similarity=0.112 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHH----HHHHHcCCCCCccccCCcCCCCcccccCCCCCCCCceEEeecCCCCcccEEEEEcCCCCeeEE
Q psy7154 205 IGMKEMRQSLRIV----EQAINKMPGGEVRTDDMKISTPSRSEMKGYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRC 280 (385)
Q Consensus 205 vR~~Ei~~Si~ii----~q~L~~l~~g~~~~~~~~~~~p~~~~~~~~~~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~ 280 (385)
+|+.|...-++.+ +++++++..|+.........+|. . -+.+|+|+|.+|||||.|+||+++++ |+|.+|
T Consensus 454 AR~~e~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~p~-----~-~p~~~~GvG~~EApRGaL~HWi~Ie~-gkI~nY 526 (597)
T PRK10170 454 CRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA-----T-WPTECRGVGFTEAPRGALGHWAAIRD-GKIDLY 526 (597)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCccccCcc-----C-CCCcceEEEEEecCCccceeeEEEeC-CeEecc
Confidence 7778877666666 67777776553221111001111 0 12478999999999999999999865 789999
Q ss_pred EEeCCCcccHH---------HHHHhhcCCccccc---------ccccccccccchhhh
Q psy7154 281 KIKAPGFAHLA---------ALEKIGKGSFLADI---------VAIIDPHIGLLHRGT 320 (385)
Q Consensus 281 ~ir~Ps~~n~~---------al~~~l~G~~i~D~---------V~~~dp~ig~~hRG~ 320 (385)
++++||+||++ ++|.++.|+.+.|. |.++|||+.|+-+=+
T Consensus 527 QiVvPTTWN~sPRD~~g~~Gp~E~aLiGt~v~d~~~Pvei~riirSFDPClaCavH~~ 584 (597)
T PRK10170 527 QCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 (597)
T ss_pred eEeCCCCCCCCCCCCCCCcCHHHHHhcCCCcCCCCCcceeeeeeecCCccccceeeEE
Confidence 99999999995 69999999887663 457999999976544
No 20
>COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]
Probab=99.90 E-value=1.2e-24 Score=211.28 Aligned_cols=83 Identities=59% Similarity=0.840 Sum_probs=81.0
Q ss_pred ccccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHh
Q psy7154 302 LADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAA 381 (385)
Q Consensus 302 i~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~ 381 (385)
-+|.|+.+||++||+|||+||++|.|+|.|.+++++|+||++++++++|||+|+|+|+|||||+||||||++++||.||+
T Consensus 37 dGE~Vv~~~p~iGylHRg~EKl~E~r~y~q~ipy~dR~dy~~~~~ne~ay~~AvEkLlgieVPeRAq~IRvm~~EL~RI~ 116 (398)
T COG0649 37 DGEIVVDADPDIGYLHRGMEKLAENRTYLQNIPYTDRLDYLSAMNNELAYVLAVEKLLGIEVPERAQYIRVMLSELNRIA 116 (398)
T ss_pred cCcEEEeccCCcccccccHHHHhhhccccccccccchhhhccccchhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 45888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy7154 382 QVL 384 (385)
Q Consensus 382 ~hl 384 (385)
|||
T Consensus 117 sHL 119 (398)
T COG0649 117 SHL 119 (398)
T ss_pred HHH
Confidence 998
No 21
>TIGR01962 NuoD NADH dehydrogenase I, D subunit. This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion.
Probab=99.89 E-value=3.1e-24 Score=215.10 Aligned_cols=82 Identities=57% Similarity=0.841 Sum_probs=80.0
Q ss_pred cccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhh
Q psy7154 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQ 382 (385)
Q Consensus 303 ~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~ 382 (385)
+|.|..+++++||.||||||+++||+|.|++++++||||+||++|++|||+|+|+++|+++|+||+++|+|++|+||++|
T Consensus 26 ge~I~~~~~~~gy~hRG~Ekl~egr~~~~~~~l~eRicgics~~h~~a~~~AvE~~~gievp~ra~~lR~i~~EleRi~s 105 (386)
T TIGR01962 26 GEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEKLLGIEVPRRAQVIRVMLSELNRISS 105 (386)
T ss_pred CCEEEEEEEeecCCCchHHHHHcCCCHHHhhhhhCccccccHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy7154 383 VL 384 (385)
Q Consensus 383 hl 384 (385)
||
T Consensus 106 Hl 107 (386)
T TIGR01962 106 HL 107 (386)
T ss_pred HH
Confidence 97
No 22
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=99.89 E-value=2.4e-24 Score=230.28 Aligned_cols=99 Identities=36% Similarity=0.468 Sum_probs=89.5
Q ss_pred eeEEEEeCCCcccHHHHHHhhcCCcccccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHH
Q psy7154 277 PYRCKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVE 356 (385)
Q Consensus 277 ~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE 356 (385)
|.|..+..|-.+.+. ..+|.|+.+||++||+|||+||++|+++|.|++++++||||+||++|++|||+|||
T Consensus 411 P~Hpg~~gp~rf~l~---------ldGE~I~~~e~~iGY~HRGiEKl~E~r~~~q~i~l~eRi~g~~s~~~~~ay~~AVE 481 (788)
T PRK13292 411 PQHPGTHGIIRFVLK---------LDGEEIVDMDSDIGYHHRGAEKIGERQHWNQFIPYTDRIDYLAGVQNNLAYVNSVE 481 (788)
T ss_pred CCCCCCCCCeEEEEE---------EcCCEEEEEEeecCchhHHHHHHHcCCCHHHhchhhcccccchhhHHHHHHHHHHH
Confidence 555555555554443 35689999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCChhHHHHHHHHHHHHHHhhhc
Q psy7154 357 KLLNIEVPLRAKYIRVMFTFYQWAAQVL 384 (385)
Q Consensus 357 ~~~gi~vp~ra~~~R~i~~eler~~~hl 384 (385)
+++|++||+||+|+|+|++|||||+|||
T Consensus 482 ~l~gievP~RA~~iRvil~ELeRI~sHL 509 (788)
T PRK13292 482 TLCGIEVPDRAIYIRVMLSELFRIANHL 509 (788)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998
No 23
>PRK06075 NADH dehydrogenase subunit D; Validated
Probab=99.89 E-value=4.9e-24 Score=213.92 Aligned_cols=82 Identities=65% Similarity=0.993 Sum_probs=80.2
Q ss_pred cccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhh
Q psy7154 303 ADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQ 382 (385)
Q Consensus 303 ~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~ 382 (385)
+|.|..+++++||.||||||++|||+|.|++++++||||+||++|++|||+|||+++|++||+||+++|+|++||||++|
T Consensus 30 ge~I~~~~~~~gy~hRG~Ek~~egr~~~~~~~l~eRicgic~~~h~~a~~~AvE~~~gi~vp~ra~~lR~i~~EleRi~s 109 (392)
T PRK06075 30 GEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEKLLGIEVPERAQYIRVLFLELNRILS 109 (392)
T ss_pred CCEEEEEEEeeccccchHHHHhcCCCHHHhhhhhCccccccHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q psy7154 383 VL 384 (385)
Q Consensus 383 hl 384 (385)
||
T Consensus 110 Hl 111 (392)
T PRK06075 110 HL 111 (392)
T ss_pred HH
Confidence 98
No 24
>PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
Probab=99.89 E-value=5.4e-24 Score=213.15 Aligned_cols=83 Identities=43% Similarity=0.550 Sum_probs=81.3
Q ss_pred ccccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHh
Q psy7154 302 LADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAA 381 (385)
Q Consensus 302 i~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~ 381 (385)
.+|.|..+||++||+|||+||++|+|+|.|++++++|+||+|+++|++|||+|||+++|++||+||+|+|+|++|||||+
T Consensus 33 ~GE~I~~~e~~~Gy~HRGiEKl~E~r~~~q~~~l~eR~~~~~~~~~~~ay~~AVE~l~gievP~Ra~~iR~i~~ELeRi~ 112 (394)
T PRK07415 33 DGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEKLANIPVPKRASYIRVIMLELNRIA 112 (394)
T ss_pred cCCEEEEeeeeeccccchHHHHHcCCCHhHcCeeeccccchhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy7154 382 QVL 384 (385)
Q Consensus 382 ~hl 384 (385)
|||
T Consensus 113 sHL 115 (394)
T PRK07415 113 NHL 115 (394)
T ss_pred HHH
Confidence 998
No 25
>PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Probab=99.88 E-value=1.7e-23 Score=218.79 Aligned_cols=83 Identities=40% Similarity=0.539 Sum_probs=81.1
Q ss_pred ccccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHh
Q psy7154 302 LADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAA 381 (385)
Q Consensus 302 i~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~ 381 (385)
-+|.|..+++++||.|||+||++|||+|.|++++++||||+||++|++|||+|||+++|++||+||+++|+|++|||||+
T Consensus 214 dGE~V~~~e~~~Gy~HRGiEkl~e~~~~~~~~~l~eRicg~~s~ah~~a~~~AvE~l~gievP~rA~~iR~il~EleRI~ 293 (575)
T PRK11742 214 DGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRIN 293 (575)
T ss_pred cCCEEEEEEEEeCCCccHHHHHHcCCChHHccchhccccccchhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy7154 382 QVL 384 (385)
Q Consensus 382 ~hl 384 (385)
|||
T Consensus 294 sHl 296 (575)
T PRK11742 294 SHL 296 (575)
T ss_pred HHH
Confidence 998
No 26
>PRK10170 hydrogenase 1 large subunit; Provisional
Probab=99.80 E-value=2.6e-20 Score=193.98 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=78.1
Q ss_pred ccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhh
Q psy7154 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQV 383 (385)
Q Consensus 304 D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~h 383 (385)
|.++...++.|++|||||++++||++.|++.+++||||+|+.+|++|+++|+|+++|+++|++|+++|+|++|+||+++|
T Consensus 40 e~vv~~a~~~g~~~RG~Ekil~GR~p~dal~iv~RICGiCs~aH~~A~~~AlE~A~gi~vP~~A~~lR~l~~e~erI~sH 119 (597)
T PRK10170 40 QNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDH 119 (597)
T ss_pred CcEEEEEEEecccccHHHHHHcCCCHHHHHHHhchhceeCHHHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy7154 384 L 384 (385)
Q Consensus 384 l 384 (385)
|
T Consensus 120 l 120 (597)
T PRK10170 120 L 120 (597)
T ss_pred H
Confidence 7
No 27
>KOG2870|consensus
Probab=99.80 E-value=1.6e-20 Score=177.57 Aligned_cols=83 Identities=76% Similarity=1.161 Sum_probs=80.8
Q ss_pred ccccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHh
Q psy7154 302 LADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAA 381 (385)
Q Consensus 302 i~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~ 381 (385)
-+|.|+.+||++|++|||.||+.|.|+|.|++|+.+|++|++.++++.|+|.|+|++++|+||.||+|||+++.|+-|++
T Consensus 91 dgE~V~~a~PhiGlLHRgtEKliEykty~QaLPYfdRlDYvsmM~nE~a~slavEkLlni~vP~RA~yIRvlf~EitRi~ 170 (452)
T KOG2870|consen 91 DGEVVVKAEPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIDVPLRAKYIRVLFGEITRIA 170 (452)
T ss_pred cCceeeecccchhhhhhhHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy7154 382 QVL 384 (385)
Q Consensus 382 ~hl 384 (385)
||+
T Consensus 171 nH~ 173 (452)
T KOG2870|consen 171 NHI 173 (452)
T ss_pred HHH
Confidence 996
No 28
>PRK10467 hydrogenase 2 large subunit; Provisional
Probab=99.77 E-value=1.7e-19 Score=187.48 Aligned_cols=80 Identities=24% Similarity=0.295 Sum_probs=73.9
Q ss_pred cccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhhc
Q psy7154 305 IVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQVL 384 (385)
Q Consensus 305 ~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~hl 384 (385)
.|...++ .|+.||||||+++||++.+++.+++||||+|+.+|++|+|+|+|+++|+++|++|+++|+|+.|+||+++||
T Consensus 27 ~V~~a~~-~g~~~RGiEkileGR~p~dal~l~~RICGiC~~aH~~A~~~AlE~a~gi~vP~~A~~iR~l~~e~eri~sHl 105 (567)
T PRK10467 27 VVSKAWA-SGTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHI 105 (567)
T ss_pred EEEEEEE-cCcccCcHHHHHcCCCHHHHHHHhchhceeCHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 3444444 667899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy7154 385 T 385 (385)
Q Consensus 385 ~ 385 (385)
.
T Consensus 106 ~ 106 (567)
T PRK10467 106 V 106 (567)
T ss_pred H
Confidence 3
No 29
>TIGR03295 frhA coenzyme F420 hydrogenase, subunit alpha. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein is a member of the Nickel-dependent hydrogenase superfamily represented by Pfam model, pfam00374.
Probab=99.77 E-value=1.9e-19 Score=182.37 Aligned_cols=74 Identities=20% Similarity=0.068 Sum_probs=70.5
Q ss_pred cccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhhc
Q psy7154 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQVL 384 (385)
Q Consensus 311 p~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~hl 384 (385)
.+.+..||||||+++||++.|++++++||||+|+++|++|||+|+|+++|+++|+||+++|+|+.|+||++|||
T Consensus 34 ~~~~~~~RG~Ek~~egr~~~~~~~l~~Ricg~c~~ah~~a~~~AvE~a~gi~vp~ra~~lR~l~~e~~ri~sHl 107 (411)
T TIGR03295 34 YLSITPVRGFEKLLVGKTAEFAPIIVSRICGICPIAHTLASVEAIEDSIDCEVPKDGLLLRELTGCANRLHSHA 107 (411)
T ss_pred EeccCcCcHHHHHHcCCCHHHHHHHHhHHhhcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999997
No 30
>COG0374 HyaB Ni,Fe-hydrogenase I large subunit [Energy production and conversion]
Probab=99.76 E-value=6e-17 Score=163.14 Aligned_cols=103 Identities=19% Similarity=0.273 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHHH----HcCCCCCccccCCcCCCCcccccCCCCCCCCceEEeecCCCCcccEEEEEcCCCCeeEE
Q psy7154 205 IGMKEMRQSLRIVEQAI----NKMPGGEVRTDDMKISTPSRSEMKGYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRC 280 (385)
Q Consensus 205 vR~~Ei~~Si~ii~q~L----~~l~~g~~~~~~~~~~~p~~~~~~~~~~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~ 280 (385)
+|+.|+...++.+..++ +.++.+......+. .|. .-+++|+|.+|||||.|+||+.++ +|+|..+
T Consensus 406 AR~~E~~~~~~~l~~~~~el~~n~~~~~~~t~~~~--~~~--------t~e~kG~G~~EApRGaL~HWi~I~-~gkI~nY 474 (545)
T COG0374 406 ARVLEAKAAANILLKWLEELMENLKKGDATTFNPE--NPA--------TWEGKGVGLTEAPRGALGHWVVIK-DGKIKNY 474 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccC--CCc--------cccccccceeeccccceeceEEec-CcEeecc
Confidence 99999987777665444 44454433322111 011 126889999999999999999998 5899999
Q ss_pred EEeCCCcccHH---------HHHHhhcCCccccc---------ccccccccccchh
Q psy7154 281 KIKAPGFAHLA---------ALEKIGKGSFLADI---------VAIIDPHIGLLHR 318 (385)
Q Consensus 281 ~ir~Ps~~n~~---------al~~~l~G~~i~D~---------V~~~dp~ig~~hR 318 (385)
++++||+||.+ +.|+++.|+.++|. +.+||||+.|+-+
T Consensus 475 Q~VvPSTWN~sPRd~~G~~G~~E~aLiGtki~~~~~Pleilr~~rSFDPClaCavH 530 (545)
T COG0374 475 QAVVPSTWNASPRDAKGQRGPYEQALIGTKIADPEQPLEILRTIHSFDPCLACAVH 530 (545)
T ss_pred eeeccccccCCCcccCCCCChHHHHhhCCCCCccccchhhheeccccCcchhceEE
Confidence 99999999995 58999999987773 4579999999755
No 31
>PF00374 NiFeSe_Hases: Nickel-dependent hydrogenase; InterPro: IPR001501 Hydrogenases are enzymes that catalyze the reversible activation of hydrogen and which occur widely in prokaryotes as well as in some eukaryotes. There are various types of hydrogenases, but all of them seem to contain at least one iron-sulphur cluster. They can be broadly divided into two groups: hydrogenases containing nickel and, in some cases, also selenium (the [NiFe] and [NiFeSe] hydrogenases) and those lacking nickel (the [Fe] hydrogenases). The [NiFe] and [NiFeSe] hydrogenases are heterodimer that consist of a small subunit that contains a signal peptide and a large subunit. All the known large subunits seem to be evolutionary related []; they contain two Cys-x-x-Cys motifs; one at their N-terminal end; the other at their C-terminal end. These four cysteines are involved in the binding of nickel []. In the [NiFeSe] hydrogenases the first cysteine of the C-terminal motif is a selenocysteine which has experimentally been shown to be a nickel ligand [].; GO: 0016151 nickel ion binding; PDB: 1E3D_D 3USC_M 3USE_L 3UQY_M 3RGW_L 1CC1_L 1YQ9_I 2FRV_D 1FRV_B 3MYR_F ....
Probab=99.72 E-value=3.3e-18 Score=176.75 Aligned_cols=67 Identities=28% Similarity=0.255 Sum_probs=58.6
Q ss_pred hhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhhc
Q psy7154 318 RGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQVL 384 (385)
Q Consensus 318 RG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~hl 384 (385)
||||++++||++.|++.+++||||+|+.+|.+|+++|+|+++|++||++|+++|+|+.++||++||+
T Consensus 1 RG~E~il~gr~~~da~~~~~RiCGvC~~~H~~a~~~A~E~a~gi~~p~~a~~~R~l~~~~~~i~~H~ 67 (507)
T PF00374_consen 1 RGFEKILEGRDPRDAPYITQRICGVCSAAHALASVRAVEDALGIEVPENARLLRNLILEAERIHDHL 67 (507)
T ss_dssp --HHHHCTTS-GGGHHHHHHTT-SSSTTHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHhcCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999997
No 32
>COG0374 HyaB Ni,Fe-hydrogenase I large subunit [Energy production and conversion]
Probab=99.67 E-value=4.3e-17 Score=164.15 Aligned_cols=74 Identities=23% Similarity=0.234 Sum_probs=72.1
Q ss_pred cccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhhc
Q psy7154 311 PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQVL 384 (385)
Q Consensus 311 p~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~hl 384 (385)
.+.|.+.||||+++.||++++|..+++||||+|+.+|++|+++|+|+|+||.||..|.++|+|++-.+.+++|.
T Consensus 31 ~ssgtlfRG~E~ILkgRDPrDA~~~tqRICGVCt~~Ha~As~~AlE~AlgItvP~nA~~~Rni~~~~~~v~dHi 104 (545)
T COG0374 31 WSSGTLFRGFEIILKGRDPRDAWAITQRICGVCTTSHALASVRALEDALGITVPVNALLIRNIMQAALFVHDHI 104 (545)
T ss_pred eecceehhhHHHHHcCCChhhhHhhhchhcccCccHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999996
No 33
>COG3259 FrhA Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion]
Probab=99.53 E-value=6.5e-15 Score=145.57 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=66.1
Q ss_pred hhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhh
Q psy7154 317 HRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQV 383 (385)
Q Consensus 317 hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~h 383 (385)
.|||||+++||++.+++.+++||||+|+++|.+|+++|+|+++|+|+|+.++.+|.|+.=-+++.||
T Consensus 39 ~RgfEk~~~Gkp~EeaP~i~~RICgiC~~sH~LAs~eA~e~a~gveip~~~~~LREl~~~g~~i~SH 105 (441)
T COG3259 39 VRGFEKFVLGKPIEEAPRIVPRICGICPASHHLASVEAAEAALGVEIPEEAEKLRELLNIGNIIESH 105 (441)
T ss_pred cchHHHHhcCCChHHhhHHhhhhhccChhHHHHHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHhhh
Confidence 5999999999999999999999999999999999999999999999999999999999999999998
No 34
>PRK00033 clpS ATP-dependent Clp protease adaptor protein ClpS; Reviewed
Probab=54.74 E-value=9 Score=31.33 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=32.0
Q ss_pred cccccccCCCCCCCcchhhhhhhhhhcCCCChhHHHH
Q psy7154 12 ETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGV 48 (385)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~a~~l 48 (385)
...|++|=|||+.-+..-=+..+..+||-..+.|..+
T Consensus 25 ~~~y~ViL~NDd~ntmd~Vv~vL~~vf~~s~~~A~~i 61 (100)
T PRK00033 25 PPMYKVLLHNDDYTPMEFVVYVLQKFFGYDRERATQI 61 (100)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 3459999999999998888999999999888887764
No 35
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=51.91 E-value=7.6 Score=30.23 Aligned_cols=39 Identities=26% Similarity=0.473 Sum_probs=27.1
Q ss_pred cccccccccCCCCCCCcchhhhhhhhhhcCCCChhHHHH
Q psy7154 10 KEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGV 48 (385)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~a~~l 48 (385)
|+...|.++=|||..-....=+..+..+||...+.|..+
T Consensus 2 ~~~~~~~vvL~NDe~ht~~~Vi~~L~~~~~~s~~~A~~~ 40 (82)
T PF02617_consen 2 KEPDMYRVVLWNDEVHTFEQVIDVLRRVFGCSEEQARQI 40 (82)
T ss_dssp BS--EEEEEEE--SSSBHHHHHHHHHHHC---HHHHHHH
T ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 567899999999999998888899999998887766653
No 36
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=41.90 E-value=39 Score=29.99 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCCCCCcchhhhhhhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH----hhhh------hchHHHHHHHHHHHHHHH
Q psy7154 20 WNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGT----HALD------VGAMTPFFWLFEEREKMM 89 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~g~~~p~a~~lR~ll~EleRI~sHll~l~~----l~~d------~G~~~~~~~~~~~RE~~~ 89 (385)
++|..+|..+|.+.++..|+..+|....+-.++.+-.|+ +.+..+.. +... +...+...-.-..++.+.
T Consensus 48 l~~p~i~~~~K~~~l~~~~~~~~~~~~nfL~~l~~~~r~-~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~~i~ 126 (177)
T PRK05758 48 LSSPLVSAEQKKKLLAAVFKSLSEYVQNFLKVLAENGRL-ALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLK 126 (177)
T ss_pred HhCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHCCcH-HHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHHHHH
Confidence 567889999999999999998887777666777776666 33333222 1111 111122222224455566
Q ss_pred HHHHHHccCCccC----CCeeeCccccCCC
Q psy7154 90 EFYERASGARMHA----AYVRPGGVALDIP 115 (385)
Q Consensus 90 ~l~e~l~G~R~h~----~~~~pGGv~~dl~ 115 (385)
+.+....|..+.. +-..+||+.-.+.
T Consensus 127 ~~l~~~~~~~v~l~~~vd~~ligG~~i~~~ 156 (177)
T PRK05758 127 AALEKRLGRKVKLNEKVDPSLIGGVIIKVG 156 (177)
T ss_pred HHHHHHHCCeeEEEeeEChHHhCceEEEEC
Confidence 6666677877642 3344677765443
No 37
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=38.64 E-value=2.7e+02 Score=24.43 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc----hHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHH
Q psy7154 51 LFAEITRILNHIMAVGTHALDVG----AMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFI 126 (385)
Q Consensus 51 ll~EleRI~sHll~l~~l~~d~G----~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l 126 (385)
+-..+++||..|.+++.....-. ....-...-.+-+.+.++.+. ..-...++.||| .+....+..++..+
T Consensus 51 ~~~~L~~iq~~L~~l~~~la~~~~~~~~~i~~~~v~~Le~~i~~~~~~---~~~~~~Filpgg---~~~~a~Lh~aRtv~ 124 (163)
T PF01923_consen 51 LREILERIQNELFDLGAELATPEEDEEPEITEEDVQELEEEIDEYSEE---LPPLKGFILPGG---SPAAAALHVARTVC 124 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSSSCS--HHHHHHHHHHHHHHHHH---S-SESSCEES-S---SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHHHHHHHHHhc---CCCCceeEeCCC---CHHHHHHHHHHHHH
Confidence 33457889999999885532211 111222333334444444444 334667999999 44555666666667
Q ss_pred HHHHHHHHHHH
Q psy7154 127 STFSARLDEVE 137 (385)
Q Consensus 127 ~~~~~~~~e~~ 137 (385)
+..+..+-.+.
T Consensus 125 RraER~~v~l~ 135 (163)
T PF01923_consen 125 RRAERRAVRLF 135 (163)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766544443
No 38
>KOG1748|consensus
Probab=34.89 E-value=28 Score=29.83 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCChh-HHHHHHHHHHHHHHhhhc
Q psy7154 350 CYSLAVEKLLNIEVPLR-AKYIRVMFTFYQWAAQVL 384 (385)
Q Consensus 350 a~~~AvE~~~gi~vp~r-a~~~R~i~~eler~~~hl 384 (385)
=-++|+|.=+|+|+|.. |+-|.++-.-.+.|++|-
T Consensus 92 EiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~~ 127 (131)
T KOG1748|consen 92 EIVMALEEEFGIEIPDEDADKIKTVRDAADYIADKP 127 (131)
T ss_pred hhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhcc
Confidence 35799999999999975 999999998888888773
No 39
>PRK13019 clpS ATP-dependent Clp protease adaptor; Reviewed
Probab=33.02 E-value=34 Score=27.66 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=28.2
Q ss_pred cccccccCCCCCCCcchhhh-hhhhhhcCCCChhHHHH
Q psy7154 12 ETKWKIINWNDNLVPVEKQI-RNMVINFGPQHPAAHGV 48 (385)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~p~a~~l 48 (385)
...|++|=|||+.-+..-=+ .-+..+||-..+.|..+
T Consensus 19 p~~ykViL~NDd~~t~dfVi~~vl~~vf~~s~~~A~~i 56 (94)
T PRK13019 19 YPLYKVIVLNDDFNTFEHVVNCLLKAIPGMSEDRAWRL 56 (94)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Confidence 44699999999998876666 45555788888777654
No 40
>PRK12449 acyl carrier protein; Provisional
Probab=30.77 E-value=70 Score=24.24 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=31.9
Q ss_pred ccccchHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHHHHHhhhcC
Q psy7154 341 YVSMMCNEQCYSLAVEKLLNIEVPLR-AKYIRVMFTFYQWAAQVLT 385 (385)
Q Consensus 341 g~~~~~h~~a~~~AvE~~~gi~vp~r-a~~~R~i~~eler~~~hl~ 385 (385)
|..|+. .+..+.++|+-+||++|+. ..-++++-.=.+-+.+|+|
T Consensus 36 g~DSl~-~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~~ 80 (80)
T PRK12449 36 AVDSIE-LVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRLT 80 (80)
T ss_pred CCcHHH-HHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhcC
Confidence 444444 5678899999999999987 4456777666666666664
No 41
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=29.79 E-value=48 Score=29.33 Aligned_cols=96 Identities=23% Similarity=0.283 Sum_probs=54.8
Q ss_pred CCCCCCcchhhhhhhhhhcCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHh----hhh------hchHHHHHHHHHHHHHH
Q psy7154 20 WNDNLVPVEKQIRNMVINFGPQ-HPAAHGVLLLFAEITRILNHIMAVGTH----ALD------VGAMTPFFWLFEEREKM 88 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~g~~-~p~a~~lR~ll~EleRI~sHll~l~~l----~~d------~G~~~~~~~~~~~RE~~ 88 (385)
.+|..+|..+|.+.++..||.. ++....+-.++.+-.|+ +++-.+..- ... +...+...-.-..++.+
T Consensus 43 l~~p~i~~~~K~~~l~~l~~~~~~~~~~nfl~~l~~~~r~-~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~~l 121 (172)
T TIGR01145 43 LSNPLISAEKKKEFIKNVFGEQLDESSLNLLLLLAENGRL-AALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKI 121 (172)
T ss_pred HhCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHCCcH-HHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHHHH
Confidence 3577899999999999999843 45665555666665555 333333221 111 11112222223445566
Q ss_pred HHHHHHHccC-----CccCCCeeeCccccCCCh
Q psy7154 89 MEFYERASGA-----RMHAAYVRPGGVALDIPI 116 (385)
Q Consensus 89 ~~l~e~l~G~-----R~h~~~~~pGGv~~dl~~ 116 (385)
.+.++...|+ +..-+-..+||+.-....
T Consensus 122 ~~~l~~~~~~~~v~~~~~vd~~ligGi~i~~~~ 154 (172)
T TIGR01145 122 AEKLEKITGAAKVKLNCKVDKDLIGGVIIRIGD 154 (172)
T ss_pred HHHHHHHhCCCeEEEEEeECHHHhCceEEEECC
Confidence 6666777787 444455567888665443
No 42
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=27.78 E-value=78 Score=28.15 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=54.0
Q ss_pred CCCCCcchhhhhhhhhhcCC--CChhHHHHHHHHHHHHHHHHHHHHHHHhh----hh------hchHHHHHHHHHHHHHH
Q psy7154 21 NDNLVPVEKQIRNMVINFGP--QHPAAHGVLLLFAEITRILNHIMAVGTHA----LD------VGAMTPFFWLFEEREKM 88 (385)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~g~--~~p~a~~lR~ll~EleRI~sHll~l~~l~----~d------~G~~~~~~~~~~~RE~~ 88 (385)
+|..+|..+|.+.++.+|+. .++....+-.++.|-.|+ +++..+.... .. +...+...-.-..++.+
T Consensus 49 ~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~~~r~-~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~~l 127 (181)
T PRK13429 49 SNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLADRRRL-GILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAI 127 (181)
T ss_pred hCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHCCcH-HHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHHHH
Confidence 56789999999999999987 455555555677776666 4444333222 11 11112211222334555
Q ss_pred HHHHHHHccCCccC----CCeeeCccccCCCh
Q psy7154 89 MEFYERASGARMHA----AYVRPGGVALDIPI 116 (385)
Q Consensus 89 ~~l~e~l~G~R~h~----~~~~pGGv~~dl~~ 116 (385)
.+.+...+|+.+.. +-..+||+.-....
T Consensus 128 ~~~L~~~~~~~~~~~~~vd~sligG~~i~~~~ 159 (181)
T PRK13429 128 RQKLEKMTGKKVELDTAVDPSLIGGVVVKIGD 159 (181)
T ss_pred HHHHHHHHCCEEEEEeeeChhhhCceEEEECC
Confidence 55556667766633 44457888755443
No 43
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=25.92 E-value=1e+02 Score=29.64 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=62.1
Q ss_pred CCCCCcchhhhhhhhhhcCCC-ChhHHHHHHHHHHHHHHHHHHHHHH----Hhhhh-hch-----HHHHHHHHHHHHHHH
Q psy7154 21 NDNLVPVEKQIRNMVINFGPQ-HPAAHGVLLLFAEITRILNHIMAVG----THALD-VGA-----MTPFFWLFEEREKMM 89 (385)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~g~~-~p~a~~lR~ll~EleRI~sHll~l~----~l~~d-~G~-----~~~~~~~~~~RE~~~ 89 (385)
+|..+|..+|.+.++.+|+-. +|....+-.++.+-.|+ +.+..+. .++.. -|. .+...---..++.+.
T Consensus 142 ~~p~i~~e~K~~ll~~l~~~~~~~~~~nfl~~lv~~~R~-~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~ 220 (271)
T PRK13430 142 SDRAAPAEAKRELLARLLYGKVTPVTERLAEQAVGRPRG-RSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLA 220 (271)
T ss_pred hCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhCCCh-hhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHH
Confidence 477889999999999999744 45544444455554443 2222222 22211 111 111111235577888
Q ss_pred HHHHHHccCCccCCC----eeeCccccCCChhHHHH-HHHHHHHHHH
Q psy7154 90 EFYERASGARMHAAY----VRPGGVALDIPIGLLDD-IYHFISTFSA 131 (385)
Q Consensus 90 ~l~e~l~G~R~h~~~----~~pGGv~~dl~~~~~~~-i~~~l~~~~~ 131 (385)
+.++..+|+.++..+ ..+||+.--+....++. ++..|+.+++
T Consensus 221 ~~L~k~~g~~V~l~~~VDpsLIGGivI~vGd~viD~Sv~~rL~~L~~ 267 (271)
T PRK13430 221 AALSRIYGRPVHLNSEVDPSVLGGMRVQVGDEVIDGSVAGRLERLRR 267 (271)
T ss_pred HHHHHHHCCceEEEeeECccccCcEEEEECCEEEehhHHHHHHHHHH
Confidence 888888998887654 35799987666555442 3444444443
No 44
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.18 E-value=1.1e+02 Score=31.85 Aligned_cols=113 Identities=17% Similarity=0.229 Sum_probs=66.9
Q ss_pred CCCCCcchhhhhhhhhhcCC---CChhHHHHHHHHHHHHHHHHH---HHHHHHhhhh-hc-----hHHHHHHHHHHHHHH
Q psy7154 21 NDNLVPVEKQIRNMVINFGP---QHPAAHGVLLLFAEITRILNH---IMAVGTHALD-VG-----AMTPFFWLFEEREKM 88 (385)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~g~---~~p~a~~lR~ll~EleRI~sH---ll~l~~l~~d-~G-----~~~~~~~~~~~RE~~ 88 (385)
+|..+|..+|.+.++.+|+- -+|....+-.++.+-.|+..- +-.+..++.. -| ..+...-.-..++.+
T Consensus 314 ~~p~i~~~~K~~ll~~l~~~~~~~~~~~~nfl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L 393 (445)
T PRK13428 314 SDYTVPADGRVALLRKVLGGASTVNPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRL 393 (445)
T ss_pred hCCCCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHH
Confidence 57789999999999999985 346555544555665554322 2222222222 11 112222223557788
Q ss_pred HHHHHHHccCCccCCC----eeeCccccCCChhHHHH-HHHHHHHHHHHH
Q psy7154 89 MEFYERASGARMHAAY----VRPGGVALDIPIGLLDD-IYHFISTFSARL 133 (385)
Q Consensus 89 ~~l~e~l~G~R~h~~~----~~pGGv~~dl~~~~~~~-i~~~l~~~~~~~ 133 (385)
.+.++..+|+.++..+ ..+||+.-.+.+..++. ++..|+.+++.+
T Consensus 394 ~~~L~k~~g~~V~l~~~VDpsLiGGivI~vGd~viD~Sv~~rL~~l~~~l 443 (445)
T PRK13428 394 TEVLSRIYGRPVSVQLHIDPELLGGLSIAVGDEVIDGTLSSRLAAAEAQL 443 (445)
T ss_pred HHHHHHHHCCceEEEeeeCchhhCceEEEECCEEeehhHHHHHHHHHhhC
Confidence 8888888998877653 45799988777665553 455555555443
No 45
>KOG3078|consensus
Probab=23.17 E-value=65 Score=30.50 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=22.7
Q ss_pred CCCcchhhhhhhhhhcCCCC-hhHHHHHH
Q psy7154 23 NLVPVEKQIRNMVINFGPQH-PAAHGVLL 50 (385)
Q Consensus 23 ~~~~~~~~~~~~~~~~g~~~-p~a~~lR~ 50 (385)
+=.++=+|+..+..+|++.| .+.-.+|.
T Consensus 24 pg~gkgt~a~~l~~~~~~~hl~tGdllr~ 52 (235)
T KOG3078|consen 24 PGSGKGTQAPRLTKNFGVIHISTGDLLRD 52 (235)
T ss_pred CCCCCCccCHHHHHhcCCccchhHHHHHH
Confidence 34567788999999999999 77778885
No 46
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=23.11 E-value=1.7e+02 Score=26.08 Aligned_cols=112 Identities=8% Similarity=0.071 Sum_probs=64.6
Q ss_pred CCCCCCcchhhhhhhhhhcCC-CChhHHHHHHHHHHHHHHHHHHHHHH----Hhhhh-hch-----HHHHHHHHHHHHHH
Q psy7154 20 WNDNLVPVEKQIRNMVINFGP-QHPAAHGVLLLFAEITRILNHIMAVG----THALD-VGA-----MTPFFWLFEEREKM 88 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~g~-~~p~a~~lR~ll~EleRI~sHll~l~----~l~~d-~G~-----~~~~~~~~~~RE~~ 88 (385)
..+..+|..+|.+.++.+||. -+|....+-.++.+-.|+.- +..+. .+... .|. .+...---..++.+
T Consensus 49 l~~P~i~~~~K~~~l~~l~~~~~~~~~~nfl~ll~~~~R~~~-l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i 127 (179)
T PRK13436 49 LTSYFIDKEEKFKIIDKIFSAKIDIYLVNFLKILAKNNLFIY-IKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRF 127 (179)
T ss_pred HcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHHCChHHH-HHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHH
Confidence 456788999999999999983 44555554456666555432 22211 11111 111 12222233567788
Q ss_pred HHHHHHHccCCccCCCe----eeCccccCCChhHHHH-HHHHHHHHHHH
Q psy7154 89 MEFYERASGARMHAAYV----RPGGVALDIPIGLLDD-IYHFISTFSAR 132 (385)
Q Consensus 89 ~~l~e~l~G~R~h~~~~----~pGGv~~dl~~~~~~~-i~~~l~~~~~~ 132 (385)
.+.++..+|..++..+. .+||+.-.+.....+. ++..|+.+++.
T Consensus 128 ~~~l~~~~g~~v~l~~~vDpslIGGi~i~~gd~viD~Sik~~L~~l~~~ 176 (179)
T PRK13436 128 ESKLSKKLNKKVHLVNKIDPKLIAGIKIKVDNKVFENSIKSKLKELKKQ 176 (179)
T ss_pred HHHHHHHHCCeEEEEeecCHHHcCceEEEECCEEeehhHHHHHHHHHHH
Confidence 88888888988776543 3799877666555442 44445554443
No 47
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=22.20 E-value=4.8e+02 Score=23.79 Aligned_cols=83 Identities=16% Similarity=0.124 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhhh--chHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHH
Q psy7154 50 LLFAEITRILNHIMAVGTH-ALDV--GAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFI 126 (385)
Q Consensus 50 ~ll~EleRI~sHll~l~~l-~~d~--G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l 126 (385)
.+-..|.|||+.|+++|.- +.+- +..-.-...-++.+.+-.....+- -..+++.|||-. ..+.+...+..+
T Consensus 56 ~i~~~L~~IQ~~LF~lG~dLat~~~~~~~i~~e~v~~LE~~id~y~~~l~---~l~~FiLPGgs~---~aA~lh~ARtv~ 129 (184)
T COG2096 56 DIRAILRRIQNDLFDLGADLATPEEKPLRITEEDVKRLEKRIDAYNAELP---PLKSFVLPGGSP---AAAALHVARTVA 129 (184)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCccccccCHHHHHHHHHHHHHHHhcCC---CcceeeccCCCH---HHHHHHHHHHHH
Confidence 4445688999999999854 2221 111123334444444444443332 356799999953 234455556666
Q ss_pred HHHHHHHHHHHH
Q psy7154 127 STFSARLDEVED 138 (385)
Q Consensus 127 ~~~~~~~~e~~~ 138 (385)
++.++.+-.+.+
T Consensus 130 RRAER~~V~l~~ 141 (184)
T COG2096 130 RRAERRLVALSR 141 (184)
T ss_pred HHHHHHHHHHHH
Confidence 667666555544
No 48
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.08 E-value=1.4e+02 Score=23.10 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=25.0
Q ss_pred cCCChhHHHH---HHHHHHHHHHHHHHHHHHHh-hChHHHH
Q psy7154 112 LDIPIGLLDD---IYHFISTFSARLDEVEDMLT-ENRLWIQ 148 (385)
Q Consensus 112 ~dl~~~~~~~---i~~~l~~~~~~~~e~~~~~~-~~~~~~~ 148 (385)
..+++++.+. +.+..+.++++++.++++++ ++|.++.
T Consensus 34 ~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDae~P~WR~ 74 (75)
T PRK09458 34 QGLSQEEQQRLAQLTEKAERMRERIQALEAILDAEHPNWRN 74 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcCC
Confidence 3567766554 45566678888999998885 4666643
Done!