Query psy7154
Match_columns 385
No_of_seqs 337 out of 2341
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:34:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_4 NADH-quinone oxidoreduc 100.0 7.6E-70 2.6E-74 544.5 23.6 289 30-318 97-409 (409)
2 2wpn_B Periplasmic [nifese] hy 100.0 3.3E-46 1.1E-50 384.7 18.1 275 30-317 86-494 (495)
3 1yqw_Q Periplasmic [NIFE] hydr 100.0 2.7E-44 9.4E-49 373.3 16.1 269 30-317 83-548 (549)
4 1wui_L Periplasmic [NIFE] hydr 100.0 6.1E-44 2.1E-48 369.8 17.6 274 30-317 74-533 (534)
5 1cc1_L Hydrogenase (large subu 100.0 5.5E-43 1.9E-47 360.8 19.5 275 30-317 81-497 (498)
6 1e3d_B [NIFE] hydrogenase larg 100.0 5.6E-40 1.9E-44 340.0 15.8 277 29-317 81-541 (542)
7 3ayx_A Membrane-bound hydrogen 100.0 4.1E-38 1.4E-42 328.5 16.4 279 30-317 87-595 (596)
8 1yq9_H Periplasmic [NIFE] hydr 100.0 1.7E-37 5.8E-42 321.3 17.5 273 30-317 76-535 (536)
9 3myr_B Nickel-dependent hydrog 99.9 1.3E-25 4.3E-30 231.9 18.9 279 30-317 72-560 (561)
10 3uqy_L Hydrogenase-1 large cha 99.9 1.2E-23 4.1E-28 217.3 18.1 105 205-317 454-581 (582)
11 3i9v_4 NADH-quinone oxidoreduc 99.9 3.6E-24 1.2E-28 214.3 7.5 83 302-384 48-130 (409)
12 3uqy_L Hydrogenase-1 large cha 99.9 5.1E-23 1.8E-27 212.6 6.9 81 304-384 40-120 (582)
13 1wui_L Periplasmic [NIFE] hydr 99.9 2.4E-22 8.3E-27 208.1 6.8 80 304-384 28-107 (534)
14 1e3d_B [NIFE] hydrogenase larg 99.9 2.6E-22 8.8E-27 207.9 6.8 80 304-384 36-115 (542)
15 1yqw_Q Periplasmic [NIFE] hydr 99.9 2.9E-22 1E-26 208.0 6.7 80 304-384 37-116 (549)
16 1cc1_L Hydrogenase (large subu 99.9 3.2E-22 1.1E-26 206.0 6.7 80 304-384 35-114 (498)
17 2wpn_B Periplasmic [nifese] hy 99.9 3.5E-22 1.2E-26 205.7 6.7 80 304-384 40-119 (495)
18 3ayx_A Membrane-bound hydrogen 99.8 5E-22 1.7E-26 207.4 6.9 80 304-384 41-120 (596)
19 3myr_B Nickel-dependent hydrog 99.8 5.3E-22 1.8E-26 204.9 6.7 80 304-384 26-105 (561)
20 1yq9_H Periplasmic [NIFE] hydr 99.8 1.3E-21 4.3E-26 202.6 6.8 79 305-384 31-109 (536)
21 3i9v_5 NADH-quinone oxidoreduc 89.3 0.061 2.1E-06 48.5 -0.4 37 280-326 162-198 (207)
22 3dnj_A ATP-dependent CLP prote 66.6 2.2 7.7E-05 32.7 1.6 39 10-48 2-40 (85)
23 3o1f_A ATP-dependent CLP prote 50.4 6.4 0.00022 29.8 1.6 35 14-48 2-36 (81)
24 2w9r_A YLJA, ATP-dependent CLP 48.8 7.5 0.00026 31.1 1.8 38 11-48 24-61 (108)
25 2zhy_A ATP:COB(I)alamin adenos 46.1 60 0.0021 28.2 7.5 82 51-138 58-140 (183)
26 1woz_A 177AA long conserved hy 38.9 1.3E+02 0.0045 25.9 8.4 80 51-138 50-133 (177)
27 1nog_A Conserved hypothetical 36.1 1.2E+02 0.0042 26.0 7.8 80 51-136 51-132 (177)
28 1ufi_A CENP-B, major centromer 35.9 17 0.00057 25.2 1.7 12 56-67 30-41 (64)
29 2ah6_A BH1595, unknown conserv 35.8 1.3E+02 0.0046 26.5 8.2 82 51-138 67-154 (208)
30 1rty_A YVQK protein; all alpha 35.1 1.3E+02 0.0043 26.3 7.8 82 51-138 56-141 (193)
31 1wvt_A Hypothetical protein ST 28.7 94 0.0032 26.7 5.8 77 53-137 52-130 (172)
32 1wy1_A Hypothetical protein PH 28.7 1.9E+02 0.0065 24.7 7.7 79 51-138 52-134 (172)
33 3ke4_A Hypothetical cytosolic 28.5 1.4E+02 0.0047 26.6 7.0 80 51-136 75-158 (213)
34 2g2d_A ATP:cobalamin adenosylt 26.4 1.7E+02 0.0059 25.5 7.1 82 51-138 59-148 (193)
35 3ci3_A Cobalamin adenosyltrans 25.1 1.7E+02 0.0057 25.6 6.8 78 53-136 63-147 (194)
36 2nt8_A Cobalamin adenosyltrans 24.6 1.8E+02 0.0063 25.9 7.1 79 52-136 91-176 (223)
37 2idx_A COB(I)yrinic acid A,C-d 22.4 1.4E+02 0.0047 26.2 5.7 76 51-132 56-141 (196)
38 3iqt_A Signal transduction his 22.2 96 0.0033 24.8 4.4 64 318-381 47-115 (123)
No 1
>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_4* 2fug_4* 3iam_4* 3ias_4* 3m9s_4*
Probab=100.00 E-value=7.6e-70 Score=544.55 Aligned_cols=289 Identities=37% Similarity=0.766 Sum_probs=273.9
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeC
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPG 108 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~~d~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pG 108 (385)
=.+|+++.+|+++ |+|+.+|+|++|+|||+||++|++.++.|+|+.++++|++++||.++++++.+||+|+|+++++||
T Consensus 97 ~~~AvE~~~gievP~ra~~iR~l~~eleRI~sHll~lg~~a~d~G~~t~~~~~~~~RE~~~~i~e~~~G~R~h~~~~~pG 176 (409)
T 3i9v_4 97 YALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFHHNYIRIG 176 (409)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHSSSSSCCCBCSS
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHcCCccccCceeeC
Confidence 3689999999988 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhccccccChhhHhhhcccCcccccCCcccccccccCCCC
Q psy7154 109 GVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQPYDG 188 (385)
Q Consensus 109 Gv~~dl~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R~~~vG~l~~~~a~~~~~~Gp~~RasGv~~D~R~~~py~~ 188 (385)
||++|++++++++++++++.+++.++++.+++.+|++|.+|++++|+++.++|.+||++||++||||+++|+|++.||+.
T Consensus 177 Gv~~dl~~~~~~~i~~~l~~~~~~~~e~~~l~~~n~i~~~R~~gvGvl~~e~A~~~g~tGp~~RaSGv~~D~R~~~PY~~ 256 (409)
T 3i9v_4 177 GVKEDLPEEFVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVRKAYPYSG 256 (409)
T ss_dssp BBSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSCTTHHHHHSSSSCBCHHHHHHHTCCSSSSGGGTCCCCHHHHSCCSS
T ss_pred CeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHhhcCCccccCHHHHHHhCCcCcccccCCCccchhhcCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCccccCCcCCCCccccc---------------CCCC
Q psy7154 189 YENFEFDIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEM---------------KGYP 248 (385)
Q Consensus 189 Y~~~~f~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~g~~~~~~~~~~~p~~~~~---------------~~~~ 248 (385)
|++++|++|+.+.||| ||+.||.||++||+|||++||+|++..+.++..+|.+..+ .+++
T Consensus 257 Y~~~~f~v~~~~~GD~~aR~~VR~~E~~qSl~ii~q~l~~lp~G~~~~~~~~~~~p~~~~~~~~~e~li~hf~~~~~~~~ 336 (409)
T 3i9v_4 257 YETYTFDVPLGERGDVFDRMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFH 336 (409)
T ss_dssp GGGSCCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCBCCCTTTSCCCGGGGGTCHHHHHHHHHHHHSCCC
T ss_pred hccCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCCchhhhhcchHHhhhhhhccccccc
Confidence 9999999999999999 9999999999999999999999998877655444543332 2567
Q ss_pred CCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHHHHHHhhcCCccccccc---ccccccccchh
Q psy7154 249 VPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVA---IIDPHIGLLHR 318 (385)
Q Consensus 249 ~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~al~~~l~G~~i~D~V~---~~dp~ig~~hR 318 (385)
+|+|++|+.||||||+++||+++||+++|+|++||+|||+||++|+.+++|+.++|+++ ++|||+||..|
T Consensus 337 ~p~Ge~~~~vEapRGe~~~~~~sdg~~~p~R~kir~Psf~nl~~l~~~~~G~~iaD~~~i~~S~D~~~~e~DR 409 (409)
T 3i9v_4 337 PPKGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMGDVDR 409 (409)
T ss_dssp CCSEEEECCEEETTEEEEEEEEECSSSSCSEEEEECHHHHTTTTTTTTTSSSCSGGGTHHHHTTCCCHHHHHC
T ss_pred CCCceEEEEEEcCCcEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHCCCcchHHHHHHhCcCCCcccccC
Confidence 89999999999999999999999999999999999999999999999999999999986 49999999876
No 2
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=100.00 E-value=3.3e-46 Score=384.71 Aligned_cols=275 Identities=15% Similarity=0.110 Sum_probs=228.6
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhh-hhhch--------------------------HHHHHHH
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHA-LDVGA--------------------------MTPFFWL 81 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~-~d~G~--------------------------~~~~~~~ 81 (385)
=.+|+++++|+.+ |.|++||.|++|+|||+||++|++.++ +|++. .+.++++
T Consensus 86 ~~~AvE~a~gi~vP~~a~~iR~l~~~~eri~sHll~~~~l~~~D~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~a 165 (495)
T 2wpn_B 86 SVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPDTAPFVPRFPKSDLRLSKELNKAGVDQYIEA 165 (495)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccccccccccchhhhhcChhhchhHHHHHHHH
Confidence 3689999999887 899999999999999999999999987 67653 2369999
Q ss_pred HHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHHHHHHHHHHHH--HHHHhhChHHHH---hhcccc-c
Q psy7154 82 FEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEV--EDMLTENRLWIQ---RTKDVG-I 155 (385)
Q Consensus 82 ~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l~~~~~~~~e~--~~~~~~~~~~~~---R~~~vG-~ 155 (385)
+++||.++++++.++|+|+|+++++||||++|+++++++++++.++.+++.+++. .+++..++.+.+ +..++| +
T Consensus 166 ~~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~l~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~g~g~~~~ 245 (495)
T 2wpn_B 166 LEVRRICHEMVALFGGRMPHVQGQVVGGATEIPTKEKLVEYAARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFKAA 245 (495)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCGGGGSSCCTTCCE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCceeeCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCce
Confidence 9999999999999999999999999999999999999999999999999888876 354444444444 344567 8
Q ss_pred cChhhHhhhcccCcccccCCc-------cccccc---ccCCCCcCC--------------------------------CC
Q psy7154 156 VSAEDALNYGFSGVMLRGSGI-------KWDLRK---VQPYDGYEN--------------------------------FE 193 (385)
Q Consensus 156 l~~~~a~~~~~~Gp~~RasGv-------~~D~R~---~~py~~Y~~--------------------------------~~ 193 (385)
++...+..++.+||.+|+||+ .+|.|+ +.||+.|++ ..
T Consensus 246 ls~~~~~~~~~~g~~~~~~Gv~~~g~~~~~D~r~i~e~~~~~~Y~~~~~~~~p~~~~t~p~~~~~~~yS~~k~Pry~~~~ 325 (495)
T 2wpn_B 246 LCVGAFPLDNSGKKHLFMPGVYAKGKDMPFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPDKAGAYSFVKAPRYDGLS 325 (495)
T ss_dssp EECCEEECSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBSBCGGGTTBCGGGCCCCBCTTCTTCCBSSCEEEETTBC
T ss_pred eehhhccccCCCCceecccceecCCceeecchhhceeecCHHHhcCCCCcCCcccccccccccccCCcccccceeeCCce
Confidence 888887778889999999999 789886 567777762 01
Q ss_pred cc-----------------------------------cccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCccccC
Q psy7154 194 FD-----------------------------------IPIGTHGNV-----IGMKEMRQSLRIVEQAINKMPGGEVRTDD 233 (385)
Q Consensus 194 f~-----------------------------------~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~g~~~~~~ 233 (385)
|+ +++...||+ ||+.|+.+|+++|+|+|++++.|+.....
T Consensus 326 ~evGPLAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~R~~aR~~E~~~s~~~i~~~l~~l~~g~~~~~~ 405 (495)
T 2wpn_B 326 LEVGPLARMWVNNPELSPVGKKLLKDLFGISAKKFRDLGEEAAFSLMGRHVARAEETYYMLGAIEGWLKEIKAGEDTVVM 405 (495)
T ss_dssp CBCSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGCHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCBCC
T ss_pred eeccHHHHHHhhccccChHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccC
Confidence 22 223334676 99999999999999999999877643221
Q ss_pred CcCCCCcccccCCCCCCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHH---------HHHHhhcCCcccc
Q psy7154 234 MKISTPSRSEMKGYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLA---------ALEKIGKGSFLAD 304 (385)
Q Consensus 234 ~~~~~p~~~~~~~~~~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~---------al~~~l~G~~i~D 304 (385)
+. .+++|+|+|.+|||||+|+||+++| +|+|++++|++||+||++ +++.++.|+.++|
T Consensus 406 -----~~-------~~~~geg~g~vEApRG~L~H~v~id-~g~i~~~~i~~PT~~N~~p~d~~~~~g~~e~~l~G~~v~d 472 (495)
T 2wpn_B 406 -----PA-------VPASAEGTGFTEAPRGSLLHYVKVK-DSKIDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPVDD 472 (495)
T ss_dssp -----CC-------CCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEECHHHHHSCCCCTTCCCCHHHHHTTTCBCSC
T ss_pred -----Cc-------cCCCceEEEEEECCCeeEEEEEEEc-CCEEEEEEEECCchhhcCCccccchHHHHHHHhcCCChhh
Confidence 10 1357999999999999999999998 489999999999999998 9999999999988
Q ss_pred c---------ccccccccccch
Q psy7154 305 I---------VAIIDPHIGLLH 317 (385)
Q Consensus 305 ~---------V~~~dp~ig~~h 317 (385)
. +.++|||++|+-
T Consensus 473 ~~~p~~i~~iirSfDPC~~Cav 494 (495)
T 2wpn_B 473 IQNPVNVARLIRAFDPXLGCAV 494 (495)
T ss_dssp TTSCHHHHHHHHHTCCBHHHHH
T ss_pred hccchhhhHhhhhcCCCccccC
Confidence 6 346999999964
No 3
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=100.00 E-value=2.7e-44 Score=373.27 Aligned_cols=269 Identities=16% Similarity=0.151 Sum_probs=224.0
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhh-hhhch---------------------------------
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHA-LDVGA--------------------------------- 74 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~-~d~G~--------------------------------- 74 (385)
=.+|+|+++|+.+ |.|++||.|++|++||+||++|++.++ +|+..
T Consensus 83 ~~~AvE~a~gi~vP~~A~~iR~L~~~~e~i~sHllhf~~l~~~D~~~~~~al~adp~~~~~~a~~~~~~~~~~~~~~~~~ 162 (549)
T 1yqw_Q 83 SSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKA 162 (549)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGSCHHHHHHHHHTTSCCCGGGSHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhcCChHHHHHHHHhhcccccCCCHHHHHH
Confidence 4689999999998 899999999999999999999999985 66532
Q ss_pred ----------------H--------------H---------HHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccC--
Q psy7154 75 ----------------M--------------T---------PFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALD-- 113 (385)
Q Consensus 75 ----------------~--------------~---------~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~d-- 113 (385)
. + .+++++++|+.++++++.++|+|+|+++++||||++|
T Consensus 163 vq~~~~~~v~~g~lg~f~~~~w~~~~~~~~l~p~~~~~~~~~~~~al~~r~~~~~i~~~~gGk~~H~~~~~pGGv~~~~~ 242 (549)
T 1yqw_Q 163 VQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQG 242 (549)
T ss_dssp HHHHHHHHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGG
T ss_pred HHHHHHHHhhccccCcccCCcccCCChhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCeEECceeCCCC
Confidence 0 1 4699999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHh------hcccc--ccChhhHhhh--cc----cCcccccCCcc--
Q psy7154 114 IPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQR------TKDVG--IVSAEDALNY--GF----SGVMLRGSGIK-- 177 (385)
Q Consensus 114 l~~~~~~~i~~~l~~~~~~~~e~~~~~~~~~~~~~R------~~~vG--~l~~~~a~~~--~~----~Gp~~RasGv~-- 177 (385)
++++.++++++.++.+++.+++.. ..+..+..| ..|+| +++..++.++ +. +|| +|+||+.
T Consensus 243 l~~~~l~~~~~~l~~~~~~~~~~~---~~d~~~~~r~~~~~~~~G~g~~~ls~~~~~~~~~~~~~~~~g~-~~~~Gv~~~ 318 (549)
T 1yqw_Q 243 LTKDPLANYLALSKEVCQFVNECY---IPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSKHLATS-QFPSGVITG 318 (549)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHTH---HHHHHHHHHHTGGGGGSSCCSCEEECCEEESCCSSHHHHHHHE-EECCEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHhhhhhhhcCCCcceeehhhhcccccCcccccCCc-ccCCceeec
Confidence 999999999999999988877753 344555555 56778 8888877766 54 678 9999987
Q ss_pred --------cccccc----------------cCCCC-----cCCCCc----------------------------------
Q psy7154 178 --------WDLRKV----------------QPYDG-----YENFEF---------------------------------- 194 (385)
Q Consensus 178 --------~D~R~~----------------~py~~-----Y~~~~f---------------------------------- 194 (385)
+|.|+. +||.. |++++|
T Consensus 319 ~~~~~~~~~D~~~i~E~v~~swy~~~~~~~~Py~~~t~p~y~~~~~~~~ySw~KaPry~g~~~evGPLAR~~v~~~~~~~ 398 (549)
T 1yqw_Q 319 RDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQP 398 (549)
T ss_dssp TCTTCCBCCCGGGEEEECTTBTBCTTCTTBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHHTCH
T ss_pred CCCCccccccHHHceeecchhhhccCcccCCCcccccCCCccccccccccccccceeECCcceeccHHHHHHhhhcccch
Confidence 888852 36665 777666
Q ss_pred -------------ccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCC-----CCCccccCCcCCCCcccccCCCC-CC
Q psy7154 195 -------------DIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMP-----GGEVRTDDMKISTPSRSEMKGYP-VP 250 (385)
Q Consensus 195 -------------~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~-----~g~~~~~~~~~~~p~~~~~~~~~-~~ 250 (385)
.+|+...||+ +|+.|+.+|+++++|++++++ ++++..+ ++ ++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~R~~aR~~E~~~s~~~i~~~l~~l~~~~~~~~~~~~~--------------~~~~~ 464 (549)
T 1yqw_Q 399 DFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAK--------------WEMPE 464 (549)
T ss_dssp HHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCBCC--------------CCCCS
T ss_pred HHHHHHHHHhhhcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccc--------------CccCC
Confidence 5555666787 999999999999999999884 3443221 12 25
Q ss_pred CCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHH---------HHHHhhcCCccccc---------ccccccc
Q psy7154 251 PGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLA---------ALEKIGKGSFLADI---------VAIIDPH 312 (385)
Q Consensus 251 ~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~---------al~~~l~G~~i~D~---------V~~~dp~ 312 (385)
+|+|+|.+|||||+|+||+++|+ |+|++++|++||+||++ +++.++.|+.++|. +.++|||
T Consensus 465 ~g~G~g~vEAPRG~L~H~i~i~~-gki~~yqiv~PT~~N~~p~d~~g~~g~~e~al~G~~v~d~~~p~~i~~iirSfDPC 543 (549)
T 1yqw_Q 465 ESKGVGLADAPRGALSHWIRIKG-KKIDNFQLVVPATWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPC 543 (549)
T ss_dssp EEEEEEEEEETTEEEEEEEEEET-TEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCB
T ss_pred CeeEEEEEEcCcccEEEEEEEcC-CEEEEEEEECCChhhcccccccchhhHHHHHhcCCchhhccchHHHHHHHHhCCCe
Confidence 79999999999999999999985 79999999999999997 99999999999887 2359999
Q ss_pred cccch
Q psy7154 313 IGLLH 317 (385)
Q Consensus 313 ig~~h 317 (385)
++|+-
T Consensus 544 lsCav 548 (549)
T 1yqw_Q 544 IACGV 548 (549)
T ss_dssp HHHHH
T ss_pred eeccc
Confidence 99964
No 4
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=100.00 E-value=6.1e-44 Score=369.79 Aligned_cols=274 Identities=16% Similarity=0.140 Sum_probs=224.4
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhh-hhhch---------------------------------
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHA-LDVGA--------------------------------- 74 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~-~d~G~--------------------------------- 74 (385)
-.+|+|+++|+.+ |.|++||.|++|++||+||++|++.++ +|++.
T Consensus 74 ~~~AvE~a~gi~vP~~A~~iR~L~~~~~~i~sHllhf~~l~~~D~~~~~~al~adp~~~~~~a~~~~~~~~~~~~~~~vq 153 (534)
T 1wui_L 74 STRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSISPRKTTAADLKAVQ 153 (534)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTGGGGGCCHHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhhhcCChHHHHHHHhhccCccCChHHHHHHH
Confidence 4689999999998 899999999999999999999999974 66532
Q ss_pred --------------HH-----------------------HHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccC--CC
Q psy7154 75 --------------MT-----------------------PFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALD--IP 115 (385)
Q Consensus 75 --------------~~-----------------------~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~d--l~ 115 (385)
.. ...+++++|+.++++++.++|+|+|+++++||||++| ++
T Consensus 154 ~~~~~~v~~g~l~~f~~~~~~~~~~~~~l~p~~~~~~~~~~~~al~~r~~~~~i~~~~gGk~~H~~~~~pGGv~~~~~l~ 233 (534)
T 1wui_L 154 DKLKTFVETGQLGPFTNAYFLGGHPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALT 233 (534)
T ss_dssp HHHHHHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGGS
T ss_pred HHHHhhhhccccCcccccccccCChhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCceEECcEeCCCCCC
Confidence 11 3456999999999999999999999999999999999 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--HHHhhChHHHHh-hcccc--ccChhhHhhh--cccCcccccCCcc-----------
Q psy7154 116 IGLLDDIYHFISTFSARLDEVE--DMLTENRLWIQR-TKDVG--IVSAEDALNY--GFSGVMLRGSGIK----------- 177 (385)
Q Consensus 116 ~~~~~~i~~~l~~~~~~~~e~~--~~~~~~~~~~~R-~~~vG--~l~~~~a~~~--~~~Gp~~RasGv~----------- 177 (385)
++.+++++++++.+++.+++.. +++...+.+.++ ..|+| +++..++.++ +.+||. |+||+.
T Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~g~~~ls~~~~~~~~~~~~g~~-~~~Gv~~~~~~~~~~~~ 312 (534)
T 1wui_L 234 PQRIAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRF-FKPGVVFKRDFKNIKPF 312 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTGGGGGSCCCSCEEEEEEEESSTTCGGGEE-EEEEEESTTCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhhhHhhcCCCCceeeHhhhcccccCCCCcc-cCCCeeecCCCcccccc
Confidence 9999999999999998888764 333222333333 46777 8888877666 778888 999987
Q ss_pred ------cccccc--------cCCC-----CcCCCCc--------------------------------------------
Q psy7154 178 ------WDLRKV--------QPYD-----GYENFEF-------------------------------------------- 194 (385)
Q Consensus 178 ------~D~R~~--------~py~-----~Y~~~~f-------------------------------------------- 194 (385)
.|+|+. +||. .|++++|
T Consensus 313 d~~~i~edvr~swy~~~~~~~Py~g~t~p~y~~~d~~~~ySw~K~Pry~g~~~evGPLAR~~v~~~~~~~~~~~~~~~~~ 392 (534)
T 1wui_L 313 DKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVL 392 (534)
T ss_dssp CGGGEEEECTTBTBSSSCCBCGGGCCCCBCCCCTTBTTBCBSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhheEEEeehhhhcccccCCCccCcccCCccccccccccccccceeeCCCceeccHHHHHHhhccccChHHHHHHHHHH
Confidence 788876 7887 6777776
Q ss_pred ---ccccCCCCcc-----hHHHHHHHHHHHHHHHHHcCC----CCCccccCCcCCCCcccccCCCCC-CCCceEEeecCC
Q psy7154 195 ---DIPIGTHGNV-----IGMKEMRQSLRIVEQAINKMP----GGEVRTDDMKISTPSRSEMKGYPV-PPGATYTAVEAP 261 (385)
Q Consensus 195 ---~~~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~----~g~~~~~~~~~~~p~~~~~~~~~~-~~Geg~g~vEap 261 (385)
++|+...||+ +|+.|+.+|+++++|++++++ .|+.... .+ +++ ++|+|+|.+|||
T Consensus 393 ~~~~~~~~~~~~~~~R~~aR~~E~~~s~~~i~~~l~~l~~~i~~g~~~~~-----~~-------~~~~~~geG~g~vEAP 460 (534)
T 1wui_L 393 AKLGVGPEALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVIC-----AP-------WEMPKQAEGVGFVNAP 460 (534)
T ss_dssp HHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCB-----CC-------CCCCSSEEEEEEEEET
T ss_pred hhcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccc-----cC-------CccCCCeeEEEEEEcC
Confidence 5555566777 999999999999999999874 2332111 00 122 579999999999
Q ss_pred CCcccEEEEEcCCCCeeEEEEeCCCcccH---------HHHHHhhcCCccccc---------ccccccccccch
Q psy7154 262 KGEFGVYLVSDGTSKPYRCKIKAPGFAHL---------AALEKIGKGSFLADI---------VAIIDPHIGLLH 317 (385)
Q Consensus 262 RG~l~h~~~~dg~g~~~r~~ir~Ps~~n~---------~al~~~l~G~~i~D~---------V~~~dp~ig~~h 317 (385)
||+|+||+++++ |+|++++|++||+||+ ++++.++.|+.++|. +.++|||++|+-
T Consensus 461 RG~L~H~i~i~~-Gki~~y~ii~PT~~N~~p~d~~g~~g~~e~al~G~~v~d~~~p~~i~~iirSfDPCl~Cav 533 (534)
T 1wui_L 461 RGGLSHWIRIED-GKIGNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDPCIACGV 533 (534)
T ss_dssp TEEEEEEEEEET-TEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHHH
T ss_pred ceeEEEEEEECC-CEEEEEEEECCChhhcccccccchhhHHHHHhcCCchhhccchHHHHHHHHcCCCeeeeec
Confidence 999999999865 7999999999999999 699999999998887 346999999964
No 5
>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Probab=100.00 E-value=5.5e-43 Score=360.80 Aligned_cols=275 Identities=15% Similarity=0.120 Sum_probs=211.7
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhh-hhh------------c----------------------
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHA-LDV------------G---------------------- 73 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~-~d~------------G---------------------- 73 (385)
=.+|+++++|+.+ |.|++||.|++|+|||+||++|++.++ +|+ |
T Consensus 81 ~~~AvE~a~gi~vP~~a~~iR~l~~~~eri~sHll~~~~l~~~D~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~p~~~~~ 160 (498)
T 1cc1_L 81 SVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDVSPFVPRYANADLLTDRIKDGAKADATNTY 160 (498)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTSCCCSSTTSCSCCTTCCCHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccccccccccchhHHHHhhhhhcccCchhhhh
Confidence 3689999999888 899999999999999999999999986 465 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHHHHHHHHHHHH--HHHHhhChHHHHh--
Q psy7154 74 AMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEV--EDMLTENRLWIQR-- 149 (385)
Q Consensus 74 ~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l~~~~~~~~e~--~~~~~~~~~~~~R-- 149 (385)
..+.+++++++||.++++++.++|+|+|+++++||||++|++++++++++++++.+++.++++ .+++..++.+.+.
T Consensus 161 ~~~~~~~a~~~r~~~~~i~~~~gG~~~h~~~~~pGGv~~~l~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~ 240 (498)
T 1cc1_L 161 GLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFE 240 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSSSCSSEETTEESSCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGGS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeecCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHh
Confidence 234679999999999999999999999999999999999999999999999999998888876 3333222322221
Q ss_pred -hcccc-ccChh-----hH-hhh-cccCcccccCCcccccc---cccCCCCcCC-----------C-----C--------
Q psy7154 150 -TKDVG-IVSAE-----DA-LNY-GFSGVMLRGSGIKWDLR---KVQPYDGYEN-----------F-----E-------- 193 (385)
Q Consensus 150 -~~~vG-~l~~~-----~a-~~~-~~~Gp~~RasGv~~D~R---~~~py~~Y~~-----------~-----~-------- 193 (385)
..+.| +++.. ++ ..| ...|++.|+++..+|.+ .+.||+.|++ . +
T Consensus 241 ~g~g~~~~l~~g~~~~~~~~~~~~~~~G~~~~g~~~~~d~~~i~ed~~~~~Y~~~~~~~~~p~~~~t~p~~~~~~~yS~~ 320 (498)
T 1cc1_L 241 TGIGWKNVIAFGVFPEDDDYKTFLLKPGVYIDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFV 320 (498)
T ss_dssp SCCCCCCEEECCEEESSTTSCCEEECCEEEETTEEECCCGGGEEEECTTBTBCCSSSSCEEGGGCCCCBCTTCTTCCBSC
T ss_pred hCCCcCceeeeccccCCccccccccCCCeeecCCccccchhhceeecChhhhccccccccCCccccccccccccCCcccc
Confidence 11222 34333 22 344 57777755444345554 2345555542 1 1
Q ss_pred ---------ccc----------------------c------------cCCCCcc-----hHHHHHHHHHHHHHHHHHcCC
Q psy7154 194 ---------FDI----------------------P------------IGTHGNV-----IGMKEMRQSLRIVEQAINKMP 225 (385)
Q Consensus 194 ---------f~~----------------------~------------~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~ 225 (385)
|++ + +...||+ +|+.|+.+|+++|+|+|++++
T Consensus 321 k~Pr~~g~~~evGPLAR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~R~~aR~~E~~~s~~~i~~~l~~l~ 400 (498)
T 1cc1_L 321 KAPRYKDKPCEVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAVAVEKWLKQVQ 400 (498)
T ss_dssp CEEEETTBCCBCSHHHHHHHHCCBCCHHHHHHHHHHHCCCCSBGGGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cceeECCcceeeCHHHHHHhhhccCChHHHHHHHHHHHhhccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444 2 1233677 999999999999999999998
Q ss_pred CCCccccCCcCCCCcccccCCCCCCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHH---------HHHHh
Q psy7154 226 GGEVRTDDMKISTPSRSEMKGYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLA---------ALEKI 296 (385)
Q Consensus 226 ~g~~~~~~~~~~~p~~~~~~~~~~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~---------al~~~ 296 (385)
.|+..... +. .+++|+|+|.+|||||+|+||+++| +|+|++++|++||+||++ +++.+
T Consensus 401 ~g~~~~~~-----~~-------~~~~geg~g~vEApRG~L~H~v~id-~g~i~~~~i~~PT~~N~~p~d~~~~~g~~e~~ 467 (498)
T 1cc1_L 401 PGAETYVK-----SE-------IPDAAEGTGFTEAPRGALLHYLKIK-DKKIENYQIVSATLWNANPRDDMGQRGPIEEA 467 (498)
T ss_dssp TTCCCBCC-----CC-------CCSSEEEEEEEEETTEEEEEEEEEE-TTEEEEEEEEETHHHHSCCCCTTCCCCHHHHH
T ss_pred cCCccccc-----cC-------cCCCceEEEEEEcCCeeEEEEEEEc-CCEEEEEEEECCChhhccCccccchHHHHHHH
Confidence 77643221 10 1257999999999999999999998 589999999999999998 99999
Q ss_pred hcCCccccc---------ccccccccccch
Q psy7154 297 GKGSFLADI---------VAIIDPHIGLLH 317 (385)
Q Consensus 297 l~G~~i~D~---------V~~~dp~ig~~h 317 (385)
+.|+.++|. +.++|||++|+-
T Consensus 468 l~G~~v~d~~~p~~i~~iirSfDPC~~Cav 497 (498)
T 1cc1_L 468 LIGVPVPDIKNPVNVGRLVRSYDPXLGCAV 497 (498)
T ss_dssp HTTCBCSCTTSCHHHHHHHHHTCCBHHHHH
T ss_pred hcCCChhhhcchhhhhheeeecCCCccccC
Confidence 999999886 346999999964
No 6
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1
Probab=100.00 E-value=5.6e-40 Score=340.01 Aligned_cols=277 Identities=15% Similarity=0.134 Sum_probs=210.0
Q ss_pred hhhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHh-hhhh----------------------------------
Q psy7154 29 KQIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTH-ALDV---------------------------------- 72 (385)
Q Consensus 29 ~~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l-~~d~---------------------------------- 72 (385)
.-.+|+++++|+.+ |.|++||.|++|++||+||++|++.+ +.|+
T Consensus 81 a~~~AvE~a~gi~vP~~A~~iR~l~~~~~~i~sHl~h~~~l~~~D~~~~~~al~adp~~~~~~a~~~~~~~~~~~~~~~~ 160 (542)
T 1e3d_B 81 ASTRCLEDAINKPIPANATYIRNLVLGNQFMHDHLVHFYHLHALDFVDVTSALLADPAKAAKLANSISPRKATTEEFAAV 160 (542)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTTGGGGSCHHHHHHHHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhhhccChHHHHHHHhhccCccCCHHHHHHH
Confidence 34689999999998 89999999999999999999999996 6664
Q ss_pred -------------chHH-----------------------HHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccC--C
Q psy7154 73 -------------GAMT-----------------------PFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALD--I 114 (385)
Q Consensus 73 -------------G~~~-----------------------~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~d--l 114 (385)
|..+ .++.++++|+.++++++.++|+|+||++++||||++| +
T Consensus 161 ~~~~~~~~~~g~lg~~~~~~~~~~~~~~~l~pe~~~~~~~~y~~al~~r~~~~~i~~~~gGk~~H~~~~~~GGv~~~~~l 240 (542)
T 1e3d_B 161 QAKLKTFVASGQLGPFTNAYFLGGHEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQFTVAGGVTCYEAL 240 (542)
T ss_dssp HHHHHHHHHTSCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCCCEETTEECCGGGG
T ss_pred HHHHHHHHhhcccccccCcccccCchhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeeCcEeCCCCC
Confidence 3222 5566999999999999999999999999999999999 9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH--HHHhhChHHHHh---------hccccccCh-hhHhh----hcccCcccccCCc--
Q psy7154 115 PIGLLDDIYHFISTFSARLDEVE--DMLTENRLWIQR---------TKDVGIVSA-EDALN----YGFSGVMLRGSGI-- 176 (385)
Q Consensus 115 ~~~~~~~i~~~l~~~~~~~~e~~--~~~~~~~~~~~R---------~~~vG~l~~-~~a~~----~~~~Gp~~RasGv-- 176 (385)
+++.+++++++++.+++.+++.. |++.-+..+ ++ +.+.|.++. +.+.+ +..+|++.|++|.
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~dl~~~~~~~-~~~~~~G~~~~~l~~g~~~~~~~~~~~~~~~~~~G~i~~~~~~~~ 319 (542)
T 1e3d_B 241 TPERIKQFRELYVKARAFIEEVYIPDLLLVASYY-KDWGKIGGTNNFMAFGEFPAPGGERDLNSRWYKPGVIYDRKVGSV 319 (542)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC-GGGGGSSCCSCEEEEEECCCTTCTTCGGGSSEEEEEECTTCGGGC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-hhhhhcCCCcceeEEeccCcccccccccccccCCceEEcCCCCcc
Confidence 99999999999999999888875 544222222 22 223344332 11222 2268899999985
Q ss_pred -cccccc---cc----------------------------CCCC-----cCCCCccc-----------------------
Q psy7154 177 -KWDLRK---VQ----------------------------PYDG-----YENFEFDI----------------------- 196 (385)
Q Consensus 177 -~~D~R~---~~----------------------------py~~-----Y~~~~f~~----------------------- 196 (385)
.+|.|+ .. ||++ |+...|++
T Consensus 320 ~~~D~~~I~E~v~~swY~~~~~hP~~g~T~P~~~~~~~~~~YSw~K~Pry~g~~~eVGPLAR~~v~~~~~~~~~~~~~~~ 399 (542)
T 1e3d_B 320 QPFDPSKIEEHVRHSWYEGKARAPFEGETNPHFTFMGDTDKYSWNKAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDA 399 (542)
T ss_dssp BCCCGGGEEEECTTBTBCSCCBCGGGCCCCBCCCCTTCSSSCBSSCEEEETTBCCBCSHHHHHHHHHHTTCTTHHHHHHH
T ss_pred cccchHHceEecchhhhcCCCCCcccCcccCCccccccccccccccCcccCCCccccCHHHHHHHhhcccChHHHHHHHH
Confidence 677775 32 4443 33222333
Q ss_pred -------ccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCC-CCccccCCcCCCCcccccCCCC-CCCCceEEeecCCC
Q psy7154 197 -------PIGTHGNV-----IGMKEMRQSLRIVEQAINKMPG-GEVRTDDMKISTPSRSEMKGYP-VPPGATYTAVEAPK 262 (385)
Q Consensus 197 -------~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~-g~~~~~~~~~~~p~~~~~~~~~-~~~Geg~g~vEapR 262 (385)
|+...+++ +|+.|+.+|++++++++++++. ++...+. ... ++ +++|+|+|.+||||
T Consensus 400 ~~~~~~l~~~~~~s~~~R~~AR~~E~~~~~~~~~~~l~~l~~~~~~~~~~--~~~--------~~~~~~g~GvG~~EApR 469 (542)
T 1e3d_B 400 VLGKLNLGPEALFSTLGRTAARGIQTLVIAQQMENWLNEYENNIVKDKQI--VED--------YAVPTSARGVGFADVSR 469 (542)
T ss_dssp HHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC--BCC--------CCCCSSEEEEEEEEETT
T ss_pred HHHhcCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCc--ccc--------ccCCCCceEEEEEEcCc
Confidence 22233555 9999999999999999998752 1110000 000 12 35799999999999
Q ss_pred CcccEEEEEcCCCCeeEEEEeCCCcccHH---------HHHHhhcCCccccc---------ccccccccccch
Q psy7154 263 GEFGVYLVSDGTSKPYRCKIKAPGFAHLA---------ALEKIGKGSFLADI---------VAIIDPHIGLLH 317 (385)
Q Consensus 263 G~l~h~~~~dg~g~~~r~~ir~Ps~~n~~---------al~~~l~G~~i~D~---------V~~~dp~ig~~h 317 (385)
|+|+||++++ +|+|+++++++||+||++ +++.++.|+.++|. |.+||||++|+-
T Consensus 470 G~L~H~i~i~-~GkI~~yqiv~PTtwN~~prd~~g~~g~~e~aL~G~~v~d~~~p~ei~~~irSfDPCl~Cav 541 (542)
T 1e3d_B 470 GGLSHWMTIE-DGKIDNFQLVVPTTWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIHSFDPCIACST 541 (542)
T ss_dssp EEEEEEEEEE-TTEEEEEEEECHHHHHTCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHHH
T ss_pred eeEEEEEEEC-CCEEEEEEEECCChhhcCccccccchhHHHHHhcCCCcccccchhHHHHHHHcCCCcceeec
Confidence 9999999985 699999999999999999 88999999988774 346999999964
No 7
>3ayx_A Membrane-bound hydrogenase large subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_A 3ayz_A 3rgw_L
Probab=100.00 E-value=4.1e-38 Score=328.54 Aligned_cols=279 Identities=15% Similarity=0.170 Sum_probs=215.8
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhh-hhh-c---------------------------------
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHA-LDV-G--------------------------------- 73 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~-~d~-G--------------------------------- 73 (385)
=.+|+++.+|+.+ |+|++||.|++|+|||+||++|++.++ +|+ .
T Consensus 87 ~~~AvE~a~gi~vP~~a~~iR~l~~e~eri~sHll~~y~L~a~D~v~~~~al~adp~~~~~~~~~~~~~~p~~~~~~~~~ 166 (596)
T 3ayx_A 87 SVRAVEDALDIKIPHNATLIREIMAKTLQIHDHIVHFYHLHALDWVNPVNALKADPQATSELQKLVSPHHPMSSPGYFKD 166 (596)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCTTGGGGCCHHHHHHHHHHHCTTCSBCCHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccCChHHHHHHHHhhccCCCCCCHHHHHH
Confidence 4689999999988 899999999999999999999999885 564 1
Q ss_pred ---------------hHHH---------------------HHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccC----
Q psy7154 74 ---------------AMTP---------------------FFWLFEEREKMMEFYERASGARMHAAYVRPGGVALD---- 113 (385)
Q Consensus 74 ---------------~~~~---------------------~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~d---- 113 (385)
.... ..+++++|+.++++++.++|+..| .+++||||.++
T Consensus 167 v~~~~~~~v~~g~lg~f~~~~wg~p~~~~~pe~~~~~~~hy~~al~~r~~~~~i~ai~GGr~pH-~~~~pGGV~~~~~~~ 245 (596)
T 3ayx_A 167 IQIRIQKFVDSGQLGIFKNGYWSNPAYKLSPEADLMAVTHYLEALDFQKEIVKIHAIFGGKNPH-PNYMVGGVPCAINID 245 (596)
T ss_dssp HHHHHHHHHHTTCCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSCSSS-CCCBTTBCSCCBCSS
T ss_pred HHHHHHHHHhccccccccccccCCccccCChhhhhHHHHHHHHHHHHHHHHHHHHHHHCCCCcc-ccEeeccEecccccc
Confidence 1111 466899999999999999999999 99999999999
Q ss_pred --------CChhHHHHHHHHHHHHHHHHHHH--HHHHhhChHHHHhh--cccc---ccChhhHhhh--cccCcccccCCc
Q psy7154 114 --------IPIGLLDDIYHFISTFSARLDEV--EDMLTENRLWIQRT--KDVG---IVSAEDALNY--GFSGVMLRGSGI 176 (385)
Q Consensus 114 --------l~~~~~~~i~~~l~~~~~~~~e~--~~~~~~~~~~~~R~--~~vG---~l~~~~a~~~--~~~Gp~~RasGv 176 (385)
++.+.+++++..++.+.+.+++. .|++.-+..+.+++ .++| +++...+.++ +.+|+. |++|+
T Consensus 246 ~~~~~~~~l~~~~l~~~~~~l~~~~~fv~~~~~~Dl~~~~~~~~~~~~g~g~g~~~~ls~g~~~~~~~~~~g~~-~~~Gv 324 (596)
T 3ayx_A 246 GDMAAGAPINMERLNFVKSLIEQGRTFNTNVYVPDVIAIAAFYRDWLYGGGLSATNVMDYGAYPKTPYDKSTDQ-LPGGA 324 (596)
T ss_dssp STTGGGSSBCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTCCCCCGGGGTCEEECCEEESSTTCGGGEE-ECCEE
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCHhhccccccCCCCCc-cCCce
Confidence 99999999999999998888884 56666566666653 4566 7776665555 667788 99998
Q ss_pred ----------ccccc---------------------cccCCCCcCCCCccc-----------------------------
Q psy7154 177 ----------KWDLR---------------------KVQPYDGYENFEFDI----------------------------- 196 (385)
Q Consensus 177 ----------~~D~R---------------------~~~py~~Y~~~~f~~----------------------------- 196 (385)
.+|.| ..+||..|...+|..
T Consensus 325 i~~g~~~~~~~~D~~~~~~I~E~v~~SwY~~~~~~~~~hP~~~~t~p~~~~~~~~~~~~~~~~~~~~~~~YSw~KaPry~ 404 (596)
T 3ayx_A 325 IINGDWGKIHPVDPRDPEQVQEFVTHSWYKYPDETKGLHPWDGITEPNYELGSKTKGSRTNIIEIDESAKYSWIKSPRWR 404 (596)
T ss_dssp ECTTCTTCCBCCCTTCTTTEEEECTTSSBCCSSTTCCBCGGGCCCCBCCCCCTTCEEETTEEEECCTTSCCCSSCEEEET
T ss_pred EEcCCCCcccccCcchhcceEEeecchhhccccccccCCCcccccccCcccccccccccccccccccccccccccceeEC
Confidence 88888 245666666655552
Q ss_pred -------ccC------------------------C-------C------------Ccc-----hHHHHHHHHHHHHHHHH
Q psy7154 197 -------PIG------------------------T-------H------------GNV-----IGMKEMRQSLRIVEQAI 221 (385)
Q Consensus 197 -------~~~------------------------~-------~------------GD~-----vR~~Ei~~Si~ii~q~L 221 (385)
|+. + . +++ +|+.|+.+|++++++++
T Consensus 405 g~~~EVGPLAR~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~~AR~~E~~~~~~~~~~~l 484 (596)
T 3ayx_A 405 GHAVEVGPLARYILAYAQGVEYVKTQVHTSLNRFNAVCRLLDPNHKDITDLKAFLGSTIGRTLARALESEYCGDMMLDDF 484 (596)
T ss_dssp TBCCBCSHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHhcccCChHHHHHHHHHHHhhcccccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 0 1 355 99999999999999998
Q ss_pred HcCC----CCCccccCCcCCCCcccccCCCCCCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHH------
Q psy7154 222 NKMP----GGEVRTDDMKISTPSRSEMKGYPVPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLA------ 291 (385)
Q Consensus 222 ~~l~----~g~~~~~~~~~~~p~~~~~~~~~~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~------ 291 (385)
+++. .|+.....+ ...|.. .-+++|+|+|++|||||+|+||+++++ |+|.++++++||+||++
T Consensus 485 ~~l~~~i~~g~~~~~~~-~~~~~~-----~~~~~g~GvG~vEAPRG~L~H~i~i~~-GkI~~yqivvPTtwN~~Prd~~g 557 (596)
T 3ayx_A 485 NQLISNIKNGDSSTANT-DKWDPS-----SWPEHAKGVGTVAAPRGALAHWIVIEK-GKIKNYQCVVPTTWNGSPRDPKG 557 (596)
T ss_dssp HHHHHHHHTTCCCCBCC-TTCSGG-----GSCSEEEEEEEEEETTEEEEEEEEEET-TEEEEEEEECHHHHHHCCCCTTC
T ss_pred HHHHHhccCCCcccccc-cccCCc-----CCCCCeeEEEEEECCCccEEEEEEEcC-CEEEEEEEECCchhhcccccccc
Confidence 7763 343221100 000100 002368899999999999999999964 79999999999999995
Q ss_pred ---HHHHhhcCCccccc---------ccccccccccch
Q psy7154 292 ---ALEKIGKGSFLADI---------VAIIDPHIGLLH 317 (385)
Q Consensus 292 ---al~~~l~G~~i~D~---------V~~~dp~ig~~h 317 (385)
+++.++.|+.++|. |.++|||++|+-
T Consensus 558 ~~g~~e~aL~G~~vad~~~p~ei~r~irSfDPClsCav 595 (596)
T 3ayx_A 558 NIGAFEASLMGTPMERPDEPVEVLRTLHSFDPCLACST 595 (596)
T ss_dssp CCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHHH
T ss_pred hhHHHHHHhcCCccCCccchHHHHHHHHhCCccccccc
Confidence 89999999988775 446999999964
No 8
>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B
Probab=100.00 E-value=1.7e-37 Score=321.31 Aligned_cols=273 Identities=15% Similarity=0.148 Sum_probs=202.9
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHhh-hhh-----------------------------------
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTHA-LDV----------------------------------- 72 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l~-~d~----------------------------------- 72 (385)
-.+|+++++|+.+ |.|++||.|++|++||+||++|++.++ +|+
T Consensus 76 ~~~AvE~a~gi~vP~~a~~iR~l~~~~e~i~sHl~h~~~l~~~D~~~~~~al~adp~~~~~~~~~~~~~~~~~~~~~~~~ 155 (536)
T 1yq9_H 76 SVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAARLANDLSPRKTTTESLKAVQ 155 (536)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCSGGGGGCCHHHHHHHHHHHCSSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhhcccChHHHHHHHHhhccccCChHHHHHHH
Confidence 4689999999988 799999999999999999999998764 565
Q ss_pred ------------chHH-----------------------HHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccC--CC
Q psy7154 73 ------------GAMT-----------------------PFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALD--IP 115 (385)
Q Consensus 73 ------------G~~~-----------------------~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~d--l~ 115 (385)
|..+ ..++++++|+.++++++.++|+|+|+++++||||++| ++
T Consensus 156 ~~~~~~~~~g~lg~f~~~~~~~~~~~~~l~pe~~~~~~~~~~~al~~r~~~~~~~~~~gGk~~h~~~~~~GGv~~~~~~~ 235 (536)
T 1yq9_H 156 AKVKALVESGQLGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTVVGGCTNYDSLR 235 (536)
T ss_dssp HHHHHHHHTTCCGGGTTCTTTTCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSCCCEETTEECCGGGGS
T ss_pred HHHHHhhhccccCcccccccccCChhhccChhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCceEECCEecCCCCC
Confidence 3221 4577999999999999999999999999999999999 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH--HHHhhChHHHHhhccccc---------cChhh--HhhhcccCcccc-cCCc---cc
Q psy7154 116 IGLLDDIYHFISTFSARLDEVE--DMLTENRLWIQRTKDVGI---------VSAED--ALNYGFSGVMLR-GSGI---KW 178 (385)
Q Consensus 116 ~~~~~~i~~~l~~~~~~~~e~~--~~~~~~~~~~~R~~~vG~---------l~~~~--a~~~~~~Gp~~R-asGv---~~ 178 (385)
++.+++++..++.+++.+++.. |++.-+..+ ++..++|. ++... ...+...|++.| ++|. .+
T Consensus 236 ~~~~~~~~~~l~~~~~~~~~~~~~dl~~~~~~~-~~~~~~G~~~~~l~~g~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~ 314 (536)
T 1yq9_H 236 PERIAEFRKLYKEVREFIEQVYITDLLAVAGFY-KNWAGIGKTSNFLTCGEFPTDEYDLNSRYTPQGVIWGNDLSKVDDF 314 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT-GGGGGSSCCCCEEECCBCCSSTTCGGGSSBCCEEECTTCTTCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHh-hhHHhhCCCcceEEeeccccccccccccccCCCeEEcCCCCccccc
Confidence 9999999999999988888776 544333322 33333332 11110 002224555555 3354 66
Q ss_pred ccccc--------------------------------cCCCC-----cCCCCccc-------------------------
Q psy7154 179 DLRKV--------------------------------QPYDG-----YENFEFDI------------------------- 196 (385)
Q Consensus 179 D~R~~--------------------------------~py~~-----Y~~~~f~~------------------------- 196 (385)
|.++. .||++ |+...+++
T Consensus 315 D~~~i~E~v~~swy~~~~~~hP~~g~T~P~~~~~~~~~~YSw~K~Pr~~g~~~evGPLAR~~v~~~~~~~~~~~~~~~~~ 394 (536)
T 1yq9_H 315 NPDLIEEHVKYSWYEGADAHHPYKGVTKPKWTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVL 394 (536)
T ss_dssp CGGGEEEECTTTTBSSSCCBCGGGCCCCBCCCCTTGGGCCCSSCEEEETTBCCBCSHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHceEecchhhhcCCCcCCCccCccCCCcccccccCCcccccCcccCCceeeccHHHHHHhhcccCCHHHHHHHHHHH
Confidence 66542 34432 22112332
Q ss_pred -----ccCCCCcc-----hHHHHHHHHHHHHHHHHHcCCC------CCccccCCcCCCCcccccCCCCCCCCceEEeecC
Q psy7154 197 -----PIGTHGNV-----IGMKEMRQSLRIVEQAINKMPG------GEVRTDDMKISTPSRSEMKGYPVPPGATYTAVEA 260 (385)
Q Consensus 197 -----~~~~~GD~-----vR~~Ei~~Si~ii~q~L~~l~~------g~~~~~~~~~~~p~~~~~~~~~~~~Geg~g~vEa 260 (385)
|+...+++ +|+.|+.+|++++++++++++. +++..+ +. .+++|+|+|.+||
T Consensus 395 ~~~~l~~~~~~s~~~R~~AR~~E~~~~~~~~~~~l~~l~~~i~~~~~~~~~~------~~-------~~~~g~GvG~vEA 461 (536)
T 1yq9_H 395 KTLGVGPEALFSTLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTD------WQ-------YPTESQGVGFVNA 461 (536)
T ss_dssp HHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCC------CC-------CCSEEEEEEEEEE
T ss_pred HhcCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccC------CC-------CCCCceEEEEEEc
Confidence 11222455 9999999999999999988752 222211 10 1257999999999
Q ss_pred CCCcccEEEEEcCCCCeeEEEEeCCCcccHH---------HHHHhhcCCccccc---------ccccccccccch
Q psy7154 261 PKGEFGVYLVSDGTSKPYRCKIKAPGFAHLA---------ALEKIGKGSFLADI---------VAIIDPHIGLLH 317 (385)
Q Consensus 261 pRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~---------al~~~l~G~~i~D~---------V~~~dp~ig~~h 317 (385)
|||+|+||++++ +|+|.++++++||+||++ +++.++.|+.++|. |.+||||++|+-
T Consensus 462 pRG~L~H~i~i~-~GkI~~yqiv~PTtwN~~prd~~g~~g~~E~aL~G~~v~d~~~p~ei~~~irSfDPClaCav 535 (536)
T 1yq9_H 462 PRGMLSHWIVQR-GGKIENFQLVVPSTWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVHSYDPCIACGV 535 (536)
T ss_dssp TTEEEEEEEEEE-TTEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHTTCBCSCTTSCHHHHHHHHHTCCBHHHHH
T ss_pred CcccEEEEEEEc-CCEEEEEEEECCChhhccccccccchhHHHHHhcCCCcccccchHHHHHHHHcCCCcceeec
Confidence 999999999996 699999999999999999 89999999988774 346999999964
No 9
>3myr_B Nickel-dependent hydrogenase large subunit; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.18.1.0
Probab=99.93 E-value=1.3e-25 Score=231.93 Aligned_cols=279 Identities=18% Similarity=0.223 Sum_probs=179.4
Q ss_pred hhhhhhhhcCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHh-hhhh-chH-------------------------------
Q psy7154 30 QIRNMVINFGPQH-PAAHGVLLLFAEITRILNHIMAVGTH-ALDV-GAM------------------------------- 75 (385)
Q Consensus 30 ~~~~~~~~~g~~~-p~a~~lR~ll~EleRI~sHll~l~~l-~~d~-G~~------------------------------- 75 (385)
=.+|+++.+|+.+ |+|+.+|.|++|+|||+||++|++.+ ++|+ ...
T Consensus 72 ~~~AvE~a~GievP~rA~~iR~l~~elerI~sHll~~~~l~a~D~~~~~~al~adp~~~~~la~~~~~~~~~~~~~~~~v 151 (561)
T 3myr_B 72 SVRAVEDALRIELPLNAQLIRNLMIGAQYIHDHVMHFYHLHALDWVDVVSALSADPRATSELAQSISAWPKSSPGYFADT 151 (561)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTCCHHHHTTCCHHHHHHHHHHHCCCSBCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCChHHHHHHHhhcccCcccChHHHHHH
Confidence 3689999999998 89999999999999999999999954 4442 100
Q ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccC-----
Q psy7154 76 -------------------------------------TPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALD----- 113 (385)
Q Consensus 76 -------------------------------------~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~d----- 113 (385)
+-...++..+.++++++..++|+-.||+ .+||||.+.
T Consensus 152 ~~r~~~~v~~g~lgpf~~~ywg~~~y~l~pe~nl~~~~hYleAL~~qr~~~~i~ai~GGK~PHp~-~~pGGvt~~~~~~~ 230 (561)
T 3myr_B 152 QKRIKTFVESGQLGIFANGYWGHPAYRLPPEANLMAVAHYLEALAWQRDTAKFHAIFGGKNPHPN-FVVGGVPSPIDLDS 230 (561)
T ss_dssp HHHHHHHHHTTCCGGGTTCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSSSCC-CBTTBCSCCBCTTC
T ss_pred HHHHHHHhhccccCCccCcccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcC-cccCceeccccccc
Confidence 1125789999999999999999999999 899999999
Q ss_pred ---CChhHHHHHHHHHHHHHHHHHHHH--HHH---hhChHHHH------hhccccccChhhH---hhhccc-CcccccC-
Q psy7154 114 ---IPIGLLDDIYHFISTFSARLDEVE--DML---TENRLWIQ------RTKDVGIVSAEDA---LNYGFS-GVMLRGS- 174 (385)
Q Consensus 114 ---l~~~~~~~i~~~l~~~~~~~~e~~--~~~---~~~~~~~~------R~~~vG~l~~~~a---~~~~~~-Gp~~Ras- 174 (385)
++.+.+.+++..++.+.+.++..+ |++ ...+.+.. ++-..|.+..... .++.+. |-+..+.
T Consensus 231 ~~~~~~~~l~~~~~~~~~~~~Fi~~~y~~D~~~i~~~y~~~~~~G~g~~~~ls~G~f~~~~~~~~~~~~~~~Gvi~~g~l 310 (561)
T 3myr_B 231 DSALNAKRLAEVRNLIQSMRTFVDQVYVPDTLAIAGFYKDWGERGEGLGNFLCYGDLPTGASLDPATFLFPRGAILDRDL 310 (561)
T ss_dssp TTSBCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCGGGGSSSCCCCCEEECCEEESSSSCCGGGEEECCEEECTTCT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcccHHHhCCCccceeEecCCCCCCCCcccccccCCcEEECCee
Confidence 787888777777776666554332 221 11222211 0001111111100 011111 1111110
Q ss_pred -C-cccc------cccccCCCCcC------------------------------------------------CCCccc-c
Q psy7154 175 -G-IKWD------LRKVQPYDGYE------------------------------------------------NFEFDI-P 197 (385)
Q Consensus 175 -G-v~~D------~R~~~py~~Y~------------------------------------------------~~~f~~-~ 197 (385)
- ..+| ++....+++|+ ...+++ |
T Consensus 311 ~~~~~~D~~~~~~I~E~v~hSwY~~~~g~~~~~hP~~g~T~P~~~~~~~~~~~~~~~~~~~kYSW~KaPRy~g~~~EvGP 390 (561)
T 3myr_B 311 STIHEVDLEATGEIQEFVNHSWYEYSVGNDRGLHPYEGQTNLEYDRRGGVAPPYKQLDVSDGYSWLKAPRWKGRSVEVGP 390 (561)
T ss_dssp TCCBCCCSSCTTTEEEECTTSSBCCTTCTTSCBCGGGCCCCBCSTTTTCCCSSCSSCCTTSCCCSSCEEEETTBCCBCSH
T ss_pred ceeeccCCCCCcceEEecCccccccccCCCCCCCCCCCcccCCcccCCCCCcchhhcCccCCcceeecceECCccccccH
Confidence 0 1234 22233333343 000111 0
Q ss_pred c---------C-------------CCCc------c------hHHHHHHHHHHHHHHHHHcC----CCCCccccCCcCCCC
Q psy7154 198 I---------G-------------THGN------V------IGMKEMRQSLRIVEQAINKM----PGGEVRTDDMKISTP 239 (385)
Q Consensus 198 ~---------~-------------~~GD------~------vR~~Ei~~Si~ii~q~L~~l----~~g~~~~~~~~~~~p 239 (385)
+ . +.|- + +|+.|+..+++.+++.+++| ..|+..+.......|
T Consensus 391 LAR~~v~~~~g~~~~~~~v~~~l~~~g~~~~~l~stlgR~~AR~~E~~~~a~~~~~~l~~l~~~i~~gd~~~~~~~~~~~ 470 (561)
T 3myr_B 391 LARVLMLYATGHDQARELVDSTLSRLDLPVDALYSTLGRTAARALESKILVDAMQGWYDGLIANVKSGDTKTFNETLWEP 470 (561)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCCGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCTTCSG
T ss_pred HHHHHHhhccCChhHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccCC
Confidence 0 0 0011 1 89999999998887777654 345433211100011
Q ss_pred cccccCCCC-CCCCceEEeecCCCCcccEEEEEcCCCCeeEEEEeCCCcccHH---------HHHHhhc-CCcccc----
Q psy7154 240 SRSEMKGYP-VPPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAPGFAHLA---------ALEKIGK-GSFLAD---- 304 (385)
Q Consensus 240 ~~~~~~~~~-~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r~~ir~Ps~~n~~---------al~~~l~-G~~i~D---- 304 (385)
.. +.+|+|+|.+|||||.|+||+++++ |+|.+|++++||+||.+ ++|.++. |+.++|
T Consensus 471 -------~~~p~~~~GvG~~EApRGaL~Hwi~I~d-GkI~nYQ~VvPTTWN~sPRD~~G~~Gp~E~aLi~gtpv~d~~~P 542 (561)
T 3myr_B 471 -------SSWPSRAQGVGIMEAPRGALGHWIVIED-GRIANYQAVVPSTWNAGPRDGRGQAGAYEAALQDNHQLVDVKQP 542 (561)
T ss_dssp -------GGSCSEEEEEEEEEETTEEEEEEEEEET-TEEEEEEEECHHHHHHCCCCTTCCCCHHHHHHHSSCBCSCTTSC
T ss_pred -------CCCCCceeEEEEEEecCccceeEEEEeC-CEEeEEEEECCCcCcCCCCCCCCCcCHHHHHHhCCCCCCCCCch
Confidence 11 2468999999999999999999986 89999999999999995 6999999 999888
Q ss_pred -----cccccccccccch
Q psy7154 305 -----IVAIIDPHIGLLH 317 (385)
Q Consensus 305 -----~V~~~dp~ig~~h 317 (385)
+|.++|||++|+-
T Consensus 543 lei~r~irSFDPClaCav 560 (561)
T 3myr_B 543 IEILRTIHSFDPCIACAV 560 (561)
T ss_dssp HHHHHHHHHTCCBHHHHH
T ss_pred HhHHHHHHhcCCcccccC
Confidence 4668999999963
No 10
>3uqy_L Hydrogenase-1 large chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_L* 3use_L*
Probab=99.91 E-value=1.2e-23 Score=217.34 Aligned_cols=105 Identities=16% Similarity=0.133 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHHHHcC----CCCCccccCCcCCCCcccccCCCC-CCCCceEEeecCCCCcccEEEEEcCCCCeeE
Q psy7154 205 IGMKEMRQSLRIVEQAINKM----PGGEVRTDDMKISTPSRSEMKGYP-VPPGATYTAVEAPKGEFGVYLVSDGTSKPYR 279 (385)
Q Consensus 205 vR~~Ei~~Si~ii~q~L~~l----~~g~~~~~~~~~~~p~~~~~~~~~-~~~Geg~g~vEapRG~l~h~~~~dg~g~~~r 279 (385)
+|+.|....++.+++.+++| ..|+..+.+.....| .. +.+|+|+|.+|||||.|+||+++++ |+|.+
T Consensus 454 AR~~E~~~~a~~~~~~~~~l~~ni~~gd~~t~~~~~~~~-------~~~p~e~~G~G~~EApRGaL~Hwi~I~~-gkI~n 525 (582)
T 3uqy_L 454 CRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP-------ATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDL 525 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCBCCTTCSG-------GGSCSEEEEEEEEEETTEEEEEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccCC-------CCCCCCceEEEEEecCCcccceeEEEeC-CEece
Confidence 78999888887777666553 344432210000001 11 2458999999999999999999884 89999
Q ss_pred EEEeCCCcccH---------HHHHHhhcCCcccc---------cccccccccccch
Q psy7154 280 CKIKAPGFAHL---------AALEKIGKGSFLAD---------IVAIIDPHIGLLH 317 (385)
Q Consensus 280 ~~ir~Ps~~n~---------~al~~~l~G~~i~D---------~V~~~dp~ig~~h 317 (385)
|++++||+||+ .++|.++.|+.++| +|.++|||++|+-
T Consensus 526 YQ~v~PTtWN~sPRD~~G~~Gp~E~ALigtpv~d~~~Plei~R~irSFDPClaCav 581 (582)
T 3uqy_L 526 YQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACST 581 (582)
T ss_dssp EEEECHHHHHTCCCCTTCCCCHHHHHHTTCBCSSTTSCHHHHHHHHHTCCBHHHHH
T ss_pred eEEECCCCCcCCCCCCCCCCCHHHHHhcCCCCCCCcchHHHHHHHHhcCCcccccC
Confidence 99999999999 47999999998877 3567999999963
No 11
>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_4* 2fug_4* 3iam_4* 3ias_4* 3m9s_4*
Probab=99.89 E-value=3.6e-24 Score=214.25 Aligned_cols=83 Identities=42% Similarity=0.620 Sum_probs=80.5
Q ss_pred ccccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHh
Q psy7154 302 LADIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAA 381 (385)
Q Consensus 302 i~D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~ 381 (385)
-+|.|..++|++||+||||||++|||+|.|++++++||||+|+++|++|||+|+|+++|++||+||+++|+|++|+||++
T Consensus 48 dge~V~~a~~~~g~~hRG~Ekl~egr~~~~~~~~~~Ricgic~~~h~~A~~~AvE~~~gievP~ra~~iR~l~~eleRI~ 127 (409)
T 3i9v_4 48 SGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLA 127 (409)
T ss_dssp SSSSCCBCCEECCTTCCCHHHHGGGSCTTGGGGTSTTSSSSSCHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred eCCEEEEEEEEecCCchhHHHHHcCCCHHHHHHHhhhhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q psy7154 382 QVL 384 (385)
Q Consensus 382 ~hl 384 (385)
|||
T Consensus 128 sHl 130 (409)
T 3i9v_4 128 SHL 130 (409)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
No 12
>3uqy_L Hydrogenase-1 large chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_L* 3use_L*
Probab=99.87 E-value=5.1e-23 Score=212.62 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=77.9
Q ss_pred ccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhh
Q psy7154 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQV 383 (385)
Q Consensus 304 D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~h 383 (385)
|.++..++++|++||||||++|||+|.|++++++||||+|+++|++|||+|||+++|++||+||++||+|++|+|||+||
T Consensus 40 E~vV~~a~~~G~~hRG~Ekilegr~~~da~~~t~RIcGic~~ah~~A~~~AvE~a~GievP~rA~~iR~l~~elerI~sH 119 (582)
T 3uqy_L 40 QNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDH 119 (582)
T ss_dssp TSBEEEEEEEECBCCCHHHHTTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCccchHHHHHHcCCCHHHHHHHhchhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45666779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy7154 384 L 384 (385)
Q Consensus 384 l 384 (385)
|
T Consensus 120 l 120 (582)
T 3uqy_L 120 L 120 (582)
T ss_dssp H
T ss_pred H
Confidence 7
No 13
>1wui_L Periplasmic [NIFE] hydrogenase large subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.18.1.1 PDB: 1ubj_L 1ubh_L 1ubl_L 1ubm_L 1ubo_L 1ubr_L 1ubt_L 1ubu_L 1wuh_L* 1ubk_L* 1wuj_L 1wuk_L 1wul_L 1h2r_L 1h2a_L
Probab=99.85 E-value=2.4e-22 Score=208.10 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=75.9
Q ss_pred ccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhh
Q psy7154 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQV 383 (385)
Q Consensus 304 D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~h 383 (385)
+.|...++ .|++||||||+++||+|.|++++++||||+|+++|++|||+|+|+++|++||++|++||+|++|+||++||
T Consensus 28 ~~V~~a~~-~g~~~RG~Ekil~gR~~~da~~it~RICGiC~~~H~~A~~~AvE~a~gi~vP~~A~~iR~L~~~~~~i~sH 106 (534)
T 1wui_L 28 GKVKNAYS-SSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDH 106 (534)
T ss_dssp TEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEE-ccccchHHHHHHcCCCHHHHHhHhcccccccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34555666 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy7154 384 L 384 (385)
Q Consensus 384 l 384 (385)
|
T Consensus 107 l 107 (534)
T 1wui_L 107 I 107 (534)
T ss_dssp H
T ss_pred H
Confidence 7
No 14
>1e3d_B [NIFE] hydrogenase large subunit; molecular modelling, electron transfer; HET: FSX; 1.8A {Desulfovibrio desulfuricans} SCOP: e.18.1.1
Probab=99.85 E-value=2.6e-22 Score=207.89 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=76.4
Q ss_pred ccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhh
Q psy7154 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQV 383 (385)
Q Consensus 304 D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~h 383 (385)
+.|...++ .|++||||||+++||+|.|++++++||||+|+++|++|||+|+|+++|++||++|++||+|++|+||++||
T Consensus 36 ~~V~~a~~-~g~~~RG~Ekil~gr~~~da~~~t~RICGiC~~~H~~a~~~AvE~a~gi~vP~~A~~iR~l~~~~~~i~sH 114 (542)
T 1e3d_B 36 GVIKEARS-CATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALASTRCLEDAINKPIPANATYIRNLVLGNQFMHDH 114 (542)
T ss_dssp TEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEE-ccccccHHHHHHcCCCHHHHHHHhcccccccHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45566677 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy7154 384 L 384 (385)
Q Consensus 384 l 384 (385)
|
T Consensus 115 l 115 (542)
T 1e3d_B 115 L 115 (542)
T ss_dssp H
T ss_pred H
Confidence 7
No 15
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Probab=99.85 E-value=2.9e-22 Score=208.00 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=76.1
Q ss_pred ccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhh
Q psy7154 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQV 383 (385)
Q Consensus 304 D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~h 383 (385)
+.|...++ .|++||||||+++||+|.|++++++||||+|+++|++|||+|+|+++|++||++|++||+|++|+|||+||
T Consensus 37 ~~V~~a~~-~g~~~RG~Ekil~gR~~~da~~it~RICGiC~~~H~~A~~~AvE~a~gi~vP~~A~~iR~L~~~~e~i~sH 115 (549)
T 1yqw_Q 37 GKVKDAWS-SSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDH 115 (549)
T ss_dssp TEEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEE-ccccchHHHHHHcCCCHHHHHHHhcccccccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555666 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy7154 384 L 384 (385)
Q Consensus 384 l 384 (385)
|
T Consensus 116 l 116 (549)
T 1yqw_Q 116 L 116 (549)
T ss_dssp H
T ss_pred H
Confidence 7
No 16
>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Probab=99.85 E-value=3.2e-22 Score=206.01 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=76.4
Q ss_pred ccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhh
Q psy7154 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQV 383 (385)
Q Consensus 304 D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~h 383 (385)
+.|..+++ +|+.||||||+++||+|.|++++++||||+|+++|++|||+|+|+++|++||++|+++|+|++|+|||+||
T Consensus 35 ~~V~~a~~-~g~~~RG~Ekil~gr~~~~a~~i~~RIcGiC~~aH~~A~~~AvE~a~gi~vP~~a~~iR~l~~~~eri~sH 113 (498)
T 1cc1_L 35 GKVVDAKC-SGGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQDDAFGVKVTTNGRITRNLIFGANYLQSH 113 (498)
T ss_dssp TEEEEEEE-EECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEE-ecCcCccHHHHhCCCCHHHHHHHhhHHHhcCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45556677 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy7154 384 L 384 (385)
Q Consensus 384 l 384 (385)
|
T Consensus 114 l 114 (498)
T 1cc1_L 114 I 114 (498)
T ss_dssp H
T ss_pred H
Confidence 7
No 17
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=99.85 E-value=3.5e-22 Score=205.66 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=76.5
Q ss_pred ccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhh
Q psy7154 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQV 383 (385)
Q Consensus 304 D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~h 383 (385)
+.|...++ .|+.||||||+++||+|.|++++++||||+|+++|++|||+|+|+++|++||++|+++|+|++|+|||+||
T Consensus 40 ~~V~~a~~-~g~~~RG~Ekil~gr~~~~a~~i~~RIcGiC~~aH~~A~~~AvE~a~gi~vP~~a~~iR~l~~~~eri~sH 118 (495)
T 2wpn_B 40 GKVVDARL-SGGMYRGFETILRGRDPRDASQIVQRICGVCPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSH 118 (495)
T ss_dssp TEEEEEEE-EECBCCCHHHHTTTSCGGGHHHHGGGGCSSSHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEE-eccccchHHHHHCCCCHHHHHHHhhhhheeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45556777 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy7154 384 L 384 (385)
Q Consensus 384 l 384 (385)
|
T Consensus 119 l 119 (495)
T 2wpn_B 119 I 119 (495)
T ss_dssp H
T ss_pred H
Confidence 7
No 18
>3ayx_A Membrane-bound hydrogenase large subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_A 3ayz_A 3rgw_L
Probab=99.85 E-value=5e-22 Score=207.37 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=76.3
Q ss_pred ccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhh
Q psy7154 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQV 383 (385)
Q Consensus 304 D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~h 383 (385)
+.|...++ +|+.||||||+++||++.|++++++||||+|+++|++|||+|||+++|++||+||+++|+|++|+|||+||
T Consensus 41 e~V~~a~~-~g~~hRG~Ek~legr~~~~a~~~~~Ricgic~~~h~~a~~~AvE~a~gi~vP~~a~~iR~l~~e~eri~sH 119 (596)
T 3ayx_A 41 NVIQNAVS-TGTMWRGLEVILRGRDPRDAWAFVERICGVCTGCHALASVRAVEDALDIKIPHNATLIREIMAKTLQIHDH 119 (596)
T ss_dssp SBEEEEEE-EECBCCCHHHHTTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEE-CCcchhHHHHHHcCCCHHHHHHHhhhhhhccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45566665 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy7154 384 L 384 (385)
Q Consensus 384 l 384 (385)
|
T Consensus 120 l 120 (596)
T 3ayx_A 120 I 120 (596)
T ss_dssp H
T ss_pred H
Confidence 7
No 19
>3myr_B Nickel-dependent hydrogenase large subunit; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.18.1.0
Probab=99.85 E-value=5.3e-22 Score=204.94 Aligned_cols=80 Identities=25% Similarity=0.319 Sum_probs=75.9
Q ss_pred ccccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhh
Q psy7154 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQV 383 (385)
Q Consensus 304 D~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~h 383 (385)
+.|..+++ +|++||||||+++||++.|++++++||||+|+++|++|||+|+|+++|+++|+||+++|+|++|+|||+||
T Consensus 26 e~V~~a~~-~g~~hRG~Ekilegr~~~~a~~l~~RIcGiC~~ah~~A~~~AvE~a~GievP~rA~~iR~l~~elerI~sH 104 (561)
T 3myr_B 26 ATIAQAYS-SGTMVRGIETILKGRDPRDAWAFVQRICGVCTLVHGIASVRAVEDALRIELPLNAQLIRNLMIGAQYIHDH 104 (561)
T ss_dssp TEEEEEEE-EECBCCCHHHHTTTSCGGGHHHHHHTTCSTTTTHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEE-ecCcchHHHHHHcCCCHHHHHHHhcccccccHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45555665 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy7154 384 L 384 (385)
Q Consensus 384 l 384 (385)
|
T Consensus 105 l 105 (561)
T 3myr_B 105 V 105 (561)
T ss_dssp H
T ss_pred H
Confidence 7
No 20
>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B
Probab=99.84 E-value=1.3e-21 Score=202.60 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=75.2
Q ss_pred cccccccccccchhhhhhhhccCCcccchhhhhcccccccchHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhhhc
Q psy7154 305 IVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVMFTFYQWAAQVL 384 (385)
Q Consensus 305 ~V~~~dp~ig~~hRG~Ek~~e~r~~~~~~~~~~Ricg~~~~~h~~a~~~AvE~~~gi~vp~ra~~~R~i~~eler~~~hl 384 (385)
.|..+++ .|++||||||+++||++.|++++++||||+|+++|++|||+|+|+++|++||++|+++|+|++|+||++|||
T Consensus 31 ~V~~a~~-~g~~~RG~E~il~gr~~~da~~~~~RICGiC~~~H~~a~~~AvE~a~gi~vP~~a~~iR~l~~~~e~i~sHl 109 (536)
T 1yq9_H 31 KIKNAWS-MSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALASVRAVDNCVGVKIPENATLMRNLTMGAQYMHDHL 109 (536)
T ss_dssp EEEEEEE-EECBCCCHHHHHTTSCGGGHHHHHHTTCSSSTTHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE-cccchHHHHHHHcCCCHHHHHHHhcccccccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4445666 899999999999999999999999999999999999999999999999999999999999999999999997
No 21
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5*
Probab=89.34 E-value=0.061 Score=48.54 Aligned_cols=37 Identities=14% Similarity=0.007 Sum_probs=31.2
Q ss_pred EEEeCCCcccHHHHHHhhcCCcccccccccccccccchhhhhhhhcc
Q psy7154 280 CKIKAPGFAHLAALEKIGKGSFLADIVAIIDPHIGLLHRGTEKLIEY 326 (385)
Q Consensus 280 ~~ir~Ps~~n~~al~~~l~G~~i~D~V~~~dp~ig~~hRG~Ek~~e~ 326 (385)
+.++.|.++.++ ..+|.|..+++++|| |||+|++++.
T Consensus 162 agiiEPghFrf~---------~~GE~i~~le~Rlgy-hkG~~~~~~~ 198 (207)
T 3i9v_5 162 GRYIIPAEFRAA---------LTGKDPGLTFYKGGS-RKGYRSLWAD 198 (207)
T ss_dssp SCEECGGGTCCS---------CCSSCCCSSSCCCGG-GSCCCCCC--
T ss_pred cccccCccEEEE---------EcCccEEEeEEeccc-hHhHHHHHHH
Confidence 468999999877 367899999999999 9999999875
No 22
>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} SCOP: d.45.1.2 PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A 3g3p_A*
Probab=66.56 E-value=2.2 Score=32.68 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=31.4
Q ss_pred cccccccccCCCCCCCcchhhhhhhhhhcCCCChhHHHH
Q psy7154 10 KEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGV 48 (385)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~a~~l 48 (385)
|+...|++|=|||+.-|..-=+..+..+||-..+.|..+
T Consensus 2 ~~p~~y~Vil~NDd~~tme~Vv~vL~~vf~~~~e~A~~i 40 (85)
T 3dnj_A 2 QKPSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRI 40 (85)
T ss_dssp ----CEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhCCCHHHHHHH
Confidence 455689999999999998888889999999888888765
No 23
>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor, hydrolase; HET: SME; 1.40A {Escherichia coli} SCOP: d.45.1.2 PDB: 3o1f_B* 3o2o_A
Probab=50.37 E-value=6.4 Score=29.82 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=31.2
Q ss_pred cccccCCCCCCCcchhhhhhhhhhcCCCChhHHHH
Q psy7154 14 KWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGV 48 (385)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~a~~l 48 (385)
.||+|=|||..-|..-=+..+..+||-..+.|..+
T Consensus 2 ~y~Vil~NDd~~tme~Vi~vL~~vf~~~~~~A~~i 36 (81)
T 3o1f_A 2 MYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQL 36 (81)
T ss_dssp CEEEEEECCSSSCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 69999999999998888899999999988887764
No 24
>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*
Probab=48.76 E-value=7.5 Score=31.08 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=32.8
Q ss_pred ccccccccCCCCCCCcchhhhhhhhhhcCCCChhHHHH
Q psy7154 11 EETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGV 48 (385)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~a~~l 48 (385)
+...|++|=|||..-|..-=+..+..+||-..+.|..+
T Consensus 24 ~p~~y~ViL~NDd~ttmefVv~vL~~~f~~~~~~A~~i 61 (108)
T 2w9r_A 24 PPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQL 61 (108)
T ss_dssp CCCEEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 44569999999999999888999999999888887764
No 25
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=46.15 E-value=60 Score=28.18 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhch-HHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHHHHH
Q psy7154 51 LFAEITRILNHIMAVGTHALDVGA-MTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTF 129 (385)
Q Consensus 51 ll~EleRI~sHll~l~~l~~d~G~-~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l~~~ 129 (385)
+-..+++||+.|++++.-...-+. .-.....-.+-+.+-++.+.+ .....++.||| ......+.-++..++..
T Consensus 58 ~~~~L~~IQ~~Lf~lga~la~~~~~~i~~~~v~~LE~~id~~~~~l---~pl~~FILPgg---~~~aA~Lh~aRtv~RRA 131 (183)
T 2zhy_A 58 VRAALSAIQHDLFDLGGELCIPGHAAITDAHLARLDGWLAHYNGQL---PPLEEFILPGG---ARGAALAHVCRTVCRRA 131 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHHHHHHHTS---CCCCSCCBSCS---SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhC---CCCcceeeCCC---CHHHHHHHHHHHHHHHH
Confidence 344589999999999854321121 111233334444555555544 22457999999 33445555566667777
Q ss_pred HHHHHHHHH
Q psy7154 130 SARLDEVED 138 (385)
Q Consensus 130 ~~~~~e~~~ 138 (385)
+..+-.+.+
T Consensus 132 ER~~v~l~~ 140 (183)
T 2zhy_A 132 ERSIVALGA 140 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 665544443
No 26
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=38.86 E-value=1.3e+02 Score=25.86 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHh-hhh---hchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHH
Q psy7154 51 LFAEITRILNHIMAVGTH-ALD---VGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFI 126 (385)
Q Consensus 51 ll~EleRI~sHll~l~~l-~~d---~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l 126 (385)
+-..+++||+.|+++|.- +.+ .+.. ....-++-+.+-++.+.+. -...++.||| ......+.-++..+
T Consensus 50 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~--~~~v~~LE~~id~~~~~l~---~l~~FILPGg---~~~aA~LH~aRtv~ 121 (177)
T 1woz_A 50 MKKDLERVQVELFEIGEDLSTQSSKKKID--EKYVKWLEERTVEYRKESG---PVKLFVIPGG---SEEASVLHVTRSVA 121 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCCCC--HHHHHHHHHHHHHHHHHHC---CCEEEEESCS---SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCC--HHHHHHHHHHHHHHHhhCC---CCCceecCCC---CHHHHHHHHHHHHH
Confidence 344589999999999844 332 1111 2333344455555666662 2346899999 33445555566667
Q ss_pred HHHHHHHHHHHH
Q psy7154 127 STFSARLDEVED 138 (385)
Q Consensus 127 ~~~~~~~~e~~~ 138 (385)
+..+..+-.+.+
T Consensus 122 RRAER~~v~l~~ 133 (177)
T 1woz_A 122 RRVERNAVKYTK 133 (177)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666554443
No 27
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=36.14 E-value=1.2e+02 Score=26.03 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhhc-hHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHHHH
Q psy7154 51 LFAEITRILNHIMAVGTH-ALDVG-AMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFIST 128 (385)
Q Consensus 51 ll~EleRI~sHll~l~~l-~~d~G-~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l~~ 128 (385)
+-..+++||+.|+++|.- +.+-. +.-.....-++-+.+-++.+.+ --...++.||| ......+.-++..++.
T Consensus 51 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~l---~~l~~FILPGg---~~~aA~LH~aRtv~RR 124 (177)
T 1nog_A 51 IRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKAEI---GKIELFVVPGG---SVESASLHMARAVSRR 124 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCHHHHHHHHHHHHHHHHHH---CCCCSCBCSCS---SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHhhC---CCCCceeeCCC---CHHHHHHHHHHHHHHH
Confidence 344589999999999854 33211 1011233444455555666666 23347899999 3334455555666666
Q ss_pred HHHHHHHH
Q psy7154 129 FSARLDEV 136 (385)
Q Consensus 129 ~~~~~~e~ 136 (385)
.+..+-.+
T Consensus 125 AER~~v~l 132 (177)
T 1nog_A 125 LERRIVAA 132 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66654444
No 28
>1ufi_A CENP-B, major centromere autoantigen B; dimerization domain, salt bridge, riken structural genomics/proteomics initiative, RSGI; 1.65A {Homo sapiens} SCOP: a.30.4.1
Probab=35.93 E-value=17 Score=25.24 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q psy7154 56 TRILNHIMAVGT 67 (385)
Q Consensus 56 eRI~sHll~l~~ 67 (385)
+|+|||++|+-.
T Consensus 30 drvqshilhleh 41 (64)
T 1ufi_A 30 DRVQSHILHLEH 41 (64)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 799999999853
No 29
>2ah6_A BH1595, unknown conserved protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bacillus halodurans}
Probab=35.82 E-value=1.3e+02 Score=26.52 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHh-hhh--hc---hHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHH
Q psy7154 51 LFAEITRILNHIMAVGTH-ALD--VG---AMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYH 124 (385)
Q Consensus 51 ll~EleRI~sHll~l~~l-~~d--~G---~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~ 124 (385)
+-..|++||+.|+++|.- +.+ .+ +.-.....-++-+.+-.+.+.+ --...++.||| ......+.-++.
T Consensus 67 ~~~~L~~IQ~~Lfdlga~Latp~~~~~~~~~i~~~~v~~LE~~Id~~~~~l---~pl~~FILPGG---~~~aA~LHvaRT 140 (208)
T 2ah6_A 67 IRGELFKIQHELFDCGGDLAMLKVKEDRPYKAKQEIVDFLEQRIDAYIKEA---PELERFILPGG---SEAAASLHVCRT 140 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC------CCSCCHHHHHHHHHHHHHHHHHS---CCCCSCEESCS---SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccCCCHHHHHHHHHHHHHHHhhC---CCCcceeeCCC---CHHHHHHHHHHH
Confidence 444589999999999843 332 11 1001233334444455555555 23347999999 334455555666
Q ss_pred HHHHHHHHHHHHHH
Q psy7154 125 FISTFSARLDEVED 138 (385)
Q Consensus 125 ~l~~~~~~~~e~~~ 138 (385)
.++..+..+-.+.+
T Consensus 141 v~RRAER~~v~L~~ 154 (208)
T 2ah6_A 141 IARRAERYVVRLQQ 154 (208)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67777665544433
No 30
>1rty_A YVQK protein; all alpha-helical trimeric protein, structural genomics, PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: a.25.2.2
Probab=35.13 E-value=1.3e+02 Score=26.35 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhhc---hHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHH
Q psy7154 51 LFAEITRILNHIMAVGTH-ALDVG---AMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFI 126 (385)
Q Consensus 51 ll~EleRI~sHll~l~~l-~~d~G---~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l 126 (385)
+-..|++||+.|+++|.- +.+-. +.-.....-++-+.+-.+.+.+ --...++.||| ......+.-++..+
T Consensus 56 ~~~~L~~IQ~~Lf~lga~la~p~~~~~~~i~~~~v~~LE~~Id~~~~~l---~pl~~FILPGG---~~~aA~LH~aRtv~ 129 (193)
T 1rty_A 56 LTAELLTIQHELFDCGGDLAIVTERKDYKLTEESVSFLETRIDAYTAEA---PELKKFILPGG---SKCASLLHIARTIT 129 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHS---CCCCSCBCSCS---SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHHHhhC---CCCCceeeCCC---CHHHHHHHHHHHHH
Confidence 334589999999999854 32211 1001233334444555555555 23347999999 33445555566667
Q ss_pred HHHHHHHHHHHH
Q psy7154 127 STFSARLDEVED 138 (385)
Q Consensus 127 ~~~~~~~~e~~~ 138 (385)
+..+..+-.+.+
T Consensus 130 RRAER~~v~l~~ 141 (193)
T 1rty_A 130 RRAERRVVALMK 141 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777665544443
No 31
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown function; 2.30A {Sulfolobus tokodaii}
Probab=28.73 E-value=94 Score=26.66 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhhh--hchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHHHHHH
Q psy7154 53 AEITRILNHIMAVGTHALD--VGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFISTFS 130 (385)
Q Consensus 53 ~EleRI~sHll~l~~l~~d--~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l~~~~ 130 (385)
..+++||+.|++++.-..+ .+.. ....-.+-+.+-++.+.+ --...++.||| ......+.-++..++..+
T Consensus 52 ~~L~~IQ~~Lf~lga~la~~~~~i~--~~~v~~LE~~id~~~~~l---~pl~~FILPgg---~~~aA~Lh~aRtv~RRAE 123 (172)
T 1wvt_A 52 EVIQKLQNDIFSISSEIAGFDMNFS--DEKVKGIEELITNYSKEL---EPLRNFVLPGG---HIASSFLHLARAVCRRAE 123 (172)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCC--THHHHHHHHHHHHHHTTS---CCCCSCEESCS---SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHHHhhC---CCCcceeeCCC---CHHHHHHHHHHHHHHHHH
Confidence 3489999999999854223 1111 122222333333333333 22346999999 334455555666666666
Q ss_pred HHHHHHH
Q psy7154 131 ARLDEVE 137 (385)
Q Consensus 131 ~~~~e~~ 137 (385)
..+-.+.
T Consensus 124 R~~v~l~ 130 (172)
T 1wvt_A 124 RSVVTLL 130 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6544443
No 32
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=28.72 E-value=1.9e+02 Score=24.68 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHh-hhh---hchHHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHH
Q psy7154 51 LFAEITRILNHIMAVGTH-ALD---VGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFI 126 (385)
Q Consensus 51 ll~EleRI~sHll~l~~l-~~d---~G~~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l 126 (385)
+-..+++||+.|++++.- +.+ .+.. ....-.+-+.+-++.+.+ . ...++.||| ......+.-++..+
T Consensus 52 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~--~~~v~~LE~~id~~~~~l---p-l~~FILPgg---~~~aA~Lh~aRtv~ 122 (172)
T 1wy1_A 52 MKGILEEIQNDIYKIMGEIGSKGKIEGIS--EERIKWLEGLISRYEEMV---N-LKSFVLPGG---TLESAKLDVCRTIA 122 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCCCC--HHHHHHHHHHHHHHHTTC---S-CCSSCCSCS---SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCC--HHHHHHHHHHHHHHhhhC---C-CcCeEECCC---CHHHHHHHHHHHHH
Confidence 344589999999999854 332 1111 122222333333333333 2 577999999 33445555566667
Q ss_pred HHHHHHHHHHHH
Q psy7154 127 STFSARLDEVED 138 (385)
Q Consensus 127 ~~~~~~~~e~~~ 138 (385)
+..+..+-.+.+
T Consensus 123 RRAER~~v~l~~ 134 (172)
T 1wy1_A 123 RRAERKVATVLR 134 (172)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777665544443
No 33
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A {Bacillus cereus} PDB: 3ke5_A*
Probab=28.52 E-value=1.4e+02 Score=26.58 Aligned_cols=80 Identities=13% Similarity=0.203 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhhch---HHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHHH
Q psy7154 51 LFAEITRILNHIMAVGTH-ALDVGA---MTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHFI 126 (385)
Q Consensus 51 ll~EleRI~sHll~l~~l-~~d~G~---~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~l 126 (385)
+-..|++||+.|+++|.- +.+-+. .......-.+-+.+-++.+.+. -...++.|||- .....+.-++..+
T Consensus 75 ~~~~L~~IQ~~Lf~lga~LAtp~~~~~~~i~~~~v~~LE~~ID~~~~~lp---pl~~FILPGGs---~~aA~LHvARTV~ 148 (213)
T 3ke4_A 75 IYNELENIQHELFDCGGDLAIVEQKIPYKVTIVMVESLERKIDLYIEEAP---PLERFILPGGS---EAAATIHIARTVV 148 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHTBSSSSSCCCCCHHHHHHHHHHHHHHHHHSC---CCCSCBCSCSS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHhcCCCCccCCCCCHHHHHHHHHHHHHHHhcCC---CCCceEeCCCC---HHHHHHHHHHHHH
Confidence 345689999999999853 432110 0112233444555555555553 35579999993 3344555556666
Q ss_pred HHHHHHHHHH
Q psy7154 127 STFSARLDEV 136 (385)
Q Consensus 127 ~~~~~~~~e~ 136 (385)
+..+..+-.+
T Consensus 149 RRAER~~v~L 158 (213)
T 3ke4_A 149 RRAERSIVSL 158 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666654443
No 34
>2g2d_A ATP:cobalamin adenosyltransferase; helix bundle, trimer, structural genomics, PSI, protein STRU initiative; 2.00A {Mycobacterium tuberculosis}
Probab=26.44 E-value=1.7e+02 Score=25.46 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhh----ch---HHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHH
Q psy7154 51 LFAEITRILNHIMAVGTH-ALDV----GA---MTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDI 122 (385)
Q Consensus 51 ll~EleRI~sHll~l~~l-~~d~----G~---~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i 122 (385)
+-..+++||+.|+++|.- +.+- ++ .-.....-.+-+.+-++.+.+ --...++.||| ......+.-+
T Consensus 59 ~~~~L~~IQ~~Lf~lga~la~p~~~~~~~~~~~i~~~~v~~LE~~id~~~~~l---~pl~~FILPGG---~~~aA~LH~a 132 (193)
T 2g2d_A 59 ITDVLRQIQNDLFDAGADLSTPIVENPKHPPLRIAQSYIDRLEGWCDAYNAGL---PALKSFVLPGG---SPLSALLHVA 132 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSSCSSCCCCCCHHHHHHHHHHHHHHHTTC---CCCSSCEESCS---SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccccCCCHHHHHHHHHHHHHHHhhC---CCCCceeeCCC---CHHHHHHHHH
Confidence 334589999999999854 3220 11 001122333333333333333 23347999999 3344555556
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7154 123 YHFISTFSARLDEVED 138 (385)
Q Consensus 123 ~~~l~~~~~~~~e~~~ 138 (385)
+..++..+..+-.+.+
T Consensus 133 Rtv~RRAER~~v~l~~ 148 (193)
T 2g2d_A 133 RTVVRRAERSAWAAVD 148 (193)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777766555443
No 35
>3ci3_A Cobalamin adenosyltransferase PDUO-like protein; adenosyltransferase variant, adenosylcobalamin binding, ATP binding; HET: 3PO 5AD B12; 1.11A {Lactobacillus reuteri} PDB: 3ci1_A* 3ci4_A* 2r6t_A* 2r6x_A* 3gah_A* 3gai_A* 3gaj_A*
Probab=25.06 E-value=1.7e+02 Score=25.59 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHh-hhhhc---h---HHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHHH
Q psy7154 53 AEITRILNHIMAVGTH-ALDVG---A---MTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYHF 125 (385)
Q Consensus 53 ~EleRI~sHll~l~~l-~~d~G---~---~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~~ 125 (385)
..+++||+.|+++|.- +.+-. + .-.....-++-+.+-++.+.+ --...++.||| ......+.-++..
T Consensus 63 ~~L~~IQ~~Lf~lga~la~p~~~~~~~~~~i~~~~v~~LE~~id~~~~~l---~pl~~FILPGG---~~~aA~LH~aRtv 136 (194)
T 3ci3_A 63 NELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVV---PAVKKFILPGG---TQLASALHVARTI 136 (194)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCTTCCCCCCCHHHHHHHHHHHHHHHHHS---CCCSSCBCSCS---SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcccccccccCCCHHHHHHHHHHHHHHHhhC---CCCCceeeCCC---CHHHHHHHHHHHH
Confidence 4589999999999854 32211 1 001233444445555555555 23347899999 3344555555666
Q ss_pred HHHHHHHHHHH
Q psy7154 126 ISTFSARLDEV 136 (385)
Q Consensus 126 l~~~~~~~~e~ 136 (385)
++..+..+-.+
T Consensus 137 ~RRAER~~v~l 147 (194)
T 3ci3_A 137 TRRAERQIVQL 147 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666654444
No 36
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A {Lactobacillus reuteri}
Probab=24.63 E-value=1.8e+02 Score=25.94 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhc---h---HHHHHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHHHHHH
Q psy7154 52 FAEITRILNHIMAVGTH-ALDVG---A---MTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIYH 124 (385)
Q Consensus 52 l~EleRI~sHll~l~~l-~~d~G---~---~~~~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~~i~~ 124 (385)
-..|++||+.|+++|.- +.+-. + .-.....-++-+.+-++.+.+ --...++.||| ......+.-++.
T Consensus 91 ~~~L~~IQ~~Lfdlga~Latp~~~~~~~~~~i~~~~v~~LE~~Id~~~~~l---ppl~~FILPGG---s~~aA~LHvaRT 164 (223)
T 2nt8_A 91 SNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVV---PAVKKFILPGG---TQLASALHVART 164 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTCSSCCCCCCCHHHHHHHHHHHHHHHHHS---CCCSSCEESCS---SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccccCCCHHHHHHHHHHHHHHHhhC---CCCCceEeCCC---CHHHHHHHHHHH
Confidence 34589999999999844 32211 1 001233444455555555555 23447999999 334455555666
Q ss_pred HHHHHHHHHHHH
Q psy7154 125 FISTFSARLDEV 136 (385)
Q Consensus 125 ~l~~~~~~~~e~ 136 (385)
.++..+..+-.+
T Consensus 165 v~RRAER~~v~L 176 (223)
T 2nt8_A 165 ITRRAERQIVQL 176 (223)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666654444
No 37
>2idx_A COB(I)yrinic acid A,C-diamide adenosyltransferase; ATP, cobalamin; HET: ATP; 2.50A {Homo sapiens}
Probab=22.44 E-value=1.4e+02 Score=26.18 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHh-hhhhchH-----H---H-HHHHHHHHHHHHHHHHHHccCCccCCCeeeCccccCCChhHHH
Q psy7154 51 LFAEITRILNHIMAVGTH-ALDVGAM-----T---P-FFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLD 120 (385)
Q Consensus 51 ll~EleRI~sHll~l~~l-~~d~G~~-----~---~-~~~~~~~RE~~~~l~e~l~G~R~h~~~~~pGGv~~dl~~~~~~ 120 (385)
+-..+++||+.|+++|.- +.+-+.. . . ....-++-+.+-++.+.+- -...++.||| ......+.
T Consensus 56 ~~~~L~~IQ~~Lf~lga~La~p~~~~~~~~~~~~~i~~~~v~~LE~~Id~~~~~lp---pl~~FILPGG---~~~aA~LH 129 (196)
T 2idx_A 56 FAEELQKIQCTLQDVGSALATPCSSAREAHLKYTTFKAGPILELEQWIDKYTSQLP---PLTAFILPSG---GKISSALH 129 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--------------CCSHHHHHHHHHHHHHHHTSC---CCCSCBCSCS---SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccccccCCCHHHHHHHHHHHHHHHhhCC---CCCceEECCC---CHHHHHHH
Confidence 344589999999999743 3221100 0 0 1222233333334444332 3447999999 23334444
Q ss_pred HHHHHHHHHHHH
Q psy7154 121 DIYHFISTFSAR 132 (385)
Q Consensus 121 ~i~~~l~~~~~~ 132 (385)
-++..++..+..
T Consensus 130 ~aRtv~RRAER~ 141 (196)
T 2idx_A 130 FCRAVCRRAERR 141 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555544
No 38
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=22.24 E-value=96 Score=24.79 Aligned_cols=64 Identities=8% Similarity=-0.060 Sum_probs=45.9
Q ss_pred hhhhhhhccCCcccchhhhhcccccc---cchHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHHHHh
Q psy7154 318 RGTEKLIEYKTYTQALPYFDRLDYVS---MMCNEQCYSLAVEKLLNIEVP--LRAKYIRVMFTFYQWAA 381 (385)
Q Consensus 318 RG~Ek~~e~r~~~~~~~~~~Ricg~~---~~~h~~a~~~AvE~~~gi~vp--~ra~~~R~i~~eler~~ 381 (385)
.-+++.++..++.+...++=|+-|.| .+..-...|..+|+++.-.-| .-...+-.+..|++++-
T Consensus 47 ~~l~~a~~~~d~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g~~~~~l~~~l~~L~del~~v~ 115 (123)
T 3iqt_A 47 NKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVA 115 (123)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999888888886665 455778899999998755443 23344556666666654
Done!