RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7154
(385 letters)
>d2fug41 e.18.1.2 (4:35-409) NADH-quinone oxidoreductase chain 4,
Nqo4 {Thermus thermophilus [TaxId: 274]}
Length = 375
Score = 210 bits (536), Expect = 2e-65
Identities = 106/296 (35%), Positives = 176/296 (59%), Gaps = 23/296 (7%)
Query: 42 HPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMH 101
P A + ++ E++R+ +H++ +GT LD+GA+TPFF+ F ERE +++ +E +G R H
Sbjct: 76 PPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAFRERETILDLFEWVTGQRFH 135
Query: 102 AAYVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWIQRTKDVGIVSAEDA 161
Y+R GGV D+P + ++ + R+DE E + E+ ++ +R + VG++ E A
Sbjct: 136 HNYIRIGGVKEDLPEEFVPELKKLLEVLPHRIDEYEALFAESPIFYERARGVGVIPPEVA 195
Query: 162 LNYGFSGVMLRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV-----IGMKEMRQSLRI 216
++ G +G LR SG+ +D+RK PY GYE + FD+P+G G+V + ++EMR+S++I
Sbjct: 196 IDLGLTGGSLRASGVNYDVRKAYPYSGYETYTFDVPLGERGDVFDRMLVRIREMRESVKI 255
Query: 217 VEQAINKMPGGEVRTDDMKISTPSRSEMK---------------GYPVPPGATYTAVEAP 261
++QA+ ++ G VR + +I+ P R ++ G+ P G Y E+
Sbjct: 256 IKQALERLEPGPVRDPNPQITPPPRHLLETSMEAVIYHFKHYTEGFHPPKGEVYVPTESA 315
Query: 262 KGEFGVYLVSDGTSKPYRCKIKAPGFAHLAALEKIGKGSFLADIVAII---DPHIG 314
+GE G Y+VSDG S PYR K++AP F +L +L KG + D+VAII DP +G
Sbjct: 316 RGELGYYIVSDGGSMPYRVKVRAPSFVNLQSLPYACKGEQVPDMVAIIASLDPVMG 371
Score = 102 bits (255), Expect = 5e-25
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 304 DIVAIIDPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEV 363
+ V + PHIG LH G EK +E++TY Q + Y R+DY+ ++ Y+LAVEKLL V
Sbjct: 16 EEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVV 75
Query: 364 PLRAKYIRVMFTFYQWAAQVL 384
P RA+ IRV+ A L
Sbjct: 76 PPRAETIRVILNELSRLASHL 96
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 487
Score = 97.2 bits (241), Expect = 1e-22
Identities = 44/327 (13%), Positives = 74/327 (22%), Gaps = 86/327 (26%)
Query: 64 AVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGLLDDIY 123
A + + + E R E G H + GG + +
Sbjct: 140 GAKADATNTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYA 199
Query: 124 HFISTF-----------SARLDEVEDMLTENRLWIQRTKDVGIVSAEDALNYGF--SGVM 170
L V L E + + G+ +D GV
Sbjct: 200 ARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKNVIAFGVFPEDDDYKTFLLKPGVY 259
Query: 171 LRGSGIKWDLRKVQPYDGYENFEFDIPIGTHGNV----------------------IGMK 208
+ G ++D + V+ Y G+ F+ P G H +V
Sbjct: 260 IDGKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRYKDKPC 319
Query: 209 EMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMKGYPV------------------- 249
E+ R+ Q P G+ ++ + G
Sbjct: 320 EVGPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTAV 379
Query: 250 ----------------------PPGATYTAVEAPKGEFGVYLVSDGTSKPYRCKIKAP-- 285
EAP+G YL K +I +
Sbjct: 380 AVEKWLKQVQPGAETYVKSEIPDAAEGTGFTEAPRGALLHYLKIKD-KKIENYQIVSATL 438
Query: 286 -------GFAHLAALEKIGKGSFLADI 305
+E+ G + DI
Sbjct: 439 WNANPRDDMGQRGPIEEALIGVPVPDI 465
Score = 77.2 bits (189), Expect = 5e-16
Identities = 9/61 (14%), Positives = 23/61 (37%)
Query: 314 GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRVM 373
G + RG E+++ + + R+ V + +A + ++V + R +
Sbjct: 33 GGMFRGFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMAQDDAFGVKVTTNGRITRNL 92
Query: 374 F 374
Sbjct: 93 I 93
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 537
Score = 86.8 bits (214), Expect = 4e-19
Identities = 26/334 (7%), Positives = 69/334 (20%), Gaps = 102/334 (30%)
Query: 44 AAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAA 103
A G L F + H ++ + + ++ + H
Sbjct: 163 VASGQLGPFTNAYFLGGHEGYYMDPEANLVCTAHYLQALRAQVEVAKGMAVFGAKNPHTQ 222
Query: 104 YVRPGGV--ALDIPIGLLDDIYHFISTFSARLD--------------------------- 134
+ GGV + + A ++
Sbjct: 223 FTVAGGVTCYEALTPERIKQFRELYVKARAFIEEVYIPDLLLVASYYKDWGKIGGTNNFM 282
Query: 135 ------------EVEDMLTENRLWIQRTKDVGIVSAEDALNYGFS--------------- 167
++ + + R +
Sbjct: 283 AFGEFPAPGGERDLNSRWYKPGVIYDRKVGSVQPFDPSKIEEHVRHSWYEGKARAPFEGE 342
Query: 168 -----------------------------GVMLRG-SGIKWDLRKVQPYDGYENFEFDIP 197
G + + + + ++P + ++
Sbjct: 343 TNPHFTFMGDTDKYSWNKAPRYDGHAVETGPLAQMLVAYGHNHKTIKPTIDAVLGKLNLG 402
Query: 198 IGTHGNVIG-----MKEMRQSLRIVEQAINKMPGGEVRTDDMKISTPSRSEMKGYPVPPG 252
+ +G + + +E +N+ V+ D +I Y VP
Sbjct: 403 PEALFSTLGRTAARGIQTLVIAQQMENWLNEYENNIVK--DKQIVED-------YAVPTS 453
Query: 253 AT-YTAVEAPKGEFGVYLVSDGTSKPYRCKIKAP 285
A + +G ++ + K ++ P
Sbjct: 454 ARGVGFADVSRGGLSHWMTIED-GKIDNFQLVVP 486
Score = 79.8 bits (196), Expect = 7e-17
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 313 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRV 372
L RG E +++ + A + R V + + +E +N +P A YIR
Sbjct: 39 CATLFRGIETILKGRDPRDAQHFTQRTCGVCTYTHALASTRCLEDAINKPIPANATYIRN 98
Query: 373 MF 374
+
Sbjct: 99 LV 100
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 530
Score = 83.0 bits (204), Expect = 6e-18
Identities = 44/366 (12%), Positives = 77/366 (21%), Gaps = 102/366 (27%)
Query: 47 GVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVR 106
G L +F + H V +D+ A + + K H +
Sbjct: 159 GQLGIFTNAYFLGGHPAYVLPAEVDLIATAHYLEALRVQVKAARAMAIFGAKNPHTQFTV 218
Query: 107 PGGVALDIPIG---------LLDDIYHFISTFSARLDEV--------------------E 137
GG + L ++ FI
Sbjct: 219 VGGCTNYDSLRPERIAEFRKLYKEVREFIEQVYITDLLAVAGFYKNWAGIGKTSNFLTCG 278
Query: 138 DMLTENRLWIQRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRK----VQPYDGYENFE 193
+ T+ R G++ D L +K+ + PY G +
Sbjct: 279 EFPTDEYDLNSRYTPQGVIWGNDLSKVDDFNPDLIEEHVKYSWYEGADAHHPYKGVTKPK 338
Query: 194 FDIPIGTHG-----NVIGMKEMRQSLRIVEQAINKMPGGE-------------------- 228
+ G E + + + E
Sbjct: 339 WTEFHGEDRYSWMKAPRYKGEAFEVGPLASVLVAYAKKHEPTVKAVDLVLKTLGVGPEAL 398
Query: 229 --------VRTDDMKISTPSRSEM-----------------KGYPVPPGATYTAVEAPKG 263
R + V AP+G
Sbjct: 399 FSTLGRTAARGIQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTESQGVGFVNAPRG 458
Query: 264 EFGVYLVSDGTSKPYRCKIKAP---------GFAHLAALEKIGKGSFLAD---------I 305
++V G K ++ P L+A+E+ G+ +AD
Sbjct: 459 MLSHWIVQRG-GKIENFQLVVPSTWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRT 517
Query: 306 VAIIDP 311
V DP
Sbjct: 518 VHSYDP 523
Score = 78.0 bits (191), Expect = 2e-16
Identities = 12/62 (19%), Positives = 26/62 (41%)
Query: 313 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRV 372
+ L RG E +++ + A + R V + AV+ + +++P A +R
Sbjct: 32 MSTLFRGLEMILKGRDPRDAQHFTQRACGVCTYVHALASVRAVDNCVGVKIPENATLMRN 91
Query: 373 MF 374
+
Sbjct: 92 LT 93
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 534
Score = 82.5 bits (203), Expect = 9e-18
Identities = 47/412 (11%), Positives = 90/412 (21%), Gaps = 107/412 (25%)
Query: 1 MKYVVLYPDKEETKWKIINWNDNLVPVEKQIRNMVINFGPQHPAAHGVLLLFAEITRILN 60
+ P K I+ K +++ + F G L F +
Sbjct: 122 TAALKADPAKAAKVASSISPRKTTAADLKAVQDKLKTF-----VETGQLGPFTNAYFLGG 176
Query: 61 HIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALDIPIGL-- 118
H ++ A + + K H + GGV +
Sbjct: 177 HPAYYLDPETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTCYDALTPQR 236
Query: 119 LDDIYHFISTFSARLDEV---------------------------EDMLTENRLWIQRTK 151
+ + A +DEV + + R
Sbjct: 237 IAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYGGTDNFITFGEFPKDEYDLNSRFF 296
Query: 152 DVGIVSAEDALNYGFSGVMLRGSGIKWDLRK----VQPYDGYENFEFDIPIGTHGN---- 203
G+V D N M ++ + P+ G ++ G
Sbjct: 297 KPGVVFKRDFKNIKPFDKMQIEEHVRHSWYEGAEARHPWKGQTQPKYTDLHGDDRYSWMK 356
Query: 204 ----VIGMKEMRQSLRIVEQAINKMPGGE-------------------------VRTDDM 234
+ E +++ P + R +
Sbjct: 357 APRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVLAKLGVGPEALFSTLGRTAARGIET 416
Query: 235 KIS----------------TPSRSEMKGYPVPPGAT-YTAVEAPKGEFGVYLVSDGTSKP 277
+ + +P A V AP+G ++ + K
Sbjct: 417 AVIAEYVGVMLQEYKDNIAKGDNVICAPWEMPKQAEGVGFVNAPRGGLSHWIRIED-GKI 475
Query: 278 YRCKIKAPGFAHLA---------ALEKIGKGSFLAD---------IVAIIDP 311
++ P L +E G+ +AD V DP
Sbjct: 476 GNFQLVVPSTWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVHSFDP 527
Score = 80.6 bits (198), Expect = 4e-17
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 313 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRV 372
L RG E +++ + A + R V + + V+ + + +P A YIR
Sbjct: 36 SSTLFRGLEIILKGRDPRDAQHFTQRTCGVCTYTHALASTRCVDNAVGVHIPKNATYIRN 95
Query: 373 MF 374
+
Sbjct: 96 LV 97
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 543
Score = 79.8 bits (196), Expect = 7e-17
Identities = 12/62 (19%), Positives = 25/62 (40%)
Query: 313 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRV 372
L RG E +++ + A + R V + S V+ + + +P A+ +R
Sbjct: 39 SSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRN 98
Query: 373 MF 374
+
Sbjct: 99 LV 100
Score = 69.8 bits (170), Expect = 1e-13
Identities = 31/330 (9%), Positives = 69/330 (20%), Gaps = 90/330 (27%)
Query: 44 AAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAA 103
G L +F + H +++ A + + K G H
Sbjct: 165 VESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQ 224
Query: 104 YVRPGGVALDIPIGLLDDIYHFISTFSARLDEVEDMLTENRLWI---------------- 147
+ GG + + D + ++++ V + + L +
Sbjct: 225 FTVVGGCSNYQGLT-KDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNY 283
Query: 148 -----------------------QRTKDVGIVSAEDALNYGFSGVMLRGSGIKWDLRKVQ 184
+ D ++ G ++ S
Sbjct: 284 LAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKH 343
Query: 185 PYDGYENFEFDIPIGTHGNVIG-----MKEMRQSLRIVEQAINKMPGGE----------- 228
PYDG + ++ + + + I G
Sbjct: 344 PYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLG 403
Query: 229 -----------------VRTDDMKISTPSRSEM----------------KGYPVPPGATY 255
R + I + + K
Sbjct: 404 KLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGV 463
Query: 256 TAVEAPKGEFGVYLVSDGTSKPYRCKIKAP 285
+AP+G ++ G K ++ P
Sbjct: 464 GLADAPRGSLSHWIRIKG-KKIDNFQLVVP 492
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 29.9 bits (66), Expect = 0.35
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 31 IRNMVINFGPQHPAAHGVLLLFAEITRILNHIMAVGTHALDVGAMTPFFWLFEEREKMME 90
+ + + GVL + + + H L G T F + +
Sbjct: 77 ELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHRMSANISETTA 136
Query: 91 FYERASGAR------MHAAYVRPGGVALDIPIGLLD 120
+ A + YV V L +P L+D
Sbjct: 137 MITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVD 172
>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector
protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 26.9 bits (59), Expect = 0.59
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 119 LDDI--YHFISTFSARLDEVEDMLTENRLWIQRT 150
+D+I Y F + RLDEVE +LTEN ++ T
Sbjct: 10 IDNIKAYIFDAKQCGRLDEVE-VLTENLRELKHT 42
>d2bzba1 a.30.7.1 (A:1-54) Hypothetical protein BAS1536 {Bacillus
anthracis [TaxId: 1392]}
Length = 54
Score = 25.1 bits (55), Expect = 2.4
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 29 KQIRNMVINFGPQHPAAHGVLLLFAEITRILNHIM 63
K++ +V G H VLL ++ +++N M
Sbjct: 15 KELIQLVARHGLDHDK---VLLFSRDLDKLINKFM 46
>d2cy2a1 d.108.1.1 (A:1-174) Probable acetyltransferase TTHA1209
{Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 25.3 bits (54), Expect = 9.4
Identities = 11/51 (21%), Positives = 15/51 (29%)
Query: 63 MAVGTHALDVGAMTPFFWLFEEREKMMEFYERASGARMHAAYVRPGGVALD 113
G W+ +E K FYE G + + GG L
Sbjct: 111 HEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLW 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.423
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,539,207
Number of extensions: 74956
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 28
Length of query: 385
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,213,086
Effective search space: 361499628
Effective search space used: 361499628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)