BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7155
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2GV50|RFX2_RAT DNA-binding protein RFX2 OS=Rattus norvegicus GN=Rfx2 PE=2 SV=1
Length = 692
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 68/73 (93%)
Query: 77 SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136
SL+H + SPAT+QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KL+ VNAASFGKLIRS
Sbjct: 158 SLAHTARSSPATLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLEPVNAASFGKLIRS 217
Query: 137 VFIGLRTRRLGTR 149
VF+GLRTRRLGTR
Sbjct: 218 VFMGLRTRRLGTR 230
>sp|P22670|RFX1_HUMAN MHC class II regulatory factor RFX1 OS=Homo sapiens GN=RFX1 PE=1
SV=2
Length = 979
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 67/78 (85%)
Query: 77 SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136
S SH T+ SPATVQWL+DNYETAEGVSLPRS+L+ HY+ HC E KL+ VNAASFGKLIRS
Sbjct: 427 SYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRS 486
Query: 137 VFIGLRTRRLGTRRGWRF 154
VF+GLRTRRLGTR ++
Sbjct: 487 VFMGLRTRRLGTRGNSKY 504
>sp|P48377|RFX1_MOUSE MHC class II regulatory factor RFX1 OS=Mus musculus GN=Rfx1 PE=2
SV=2
Length = 963
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 67/78 (85%)
Query: 77 SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136
S SH T+ SPATVQWL+DNYETAEGVSLPRS+L+ HY+ HC E KL+ VNAASFGKLIRS
Sbjct: 412 SYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRS 471
Query: 137 VFIGLRTRRLGTRRGWRF 154
VF+GLRTRRLGTR ++
Sbjct: 472 VFMGLRTRRLGTRGNSKY 489
>sp|P48381|RFX3_MOUSE Transcription factor RFX3 OS=Mus musculus GN=Rfx3 PE=1 SV=2
Length = 749
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 92/150 (61%), Gaps = 25/150 (16%)
Query: 2 VQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTEVAYIVDEPAQATT 61
+Q+ QLI + GTYLI ++E + H+ T AS PA
Sbjct: 118 IQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRAS----------------PATIEM 161
Query: 62 A--TSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAE 119
A T D LS +H + + + +QWL+DNYETAEGVSLPRS+L+NHY+RHC E
Sbjct: 162 AIETLQKSDGLS-------THRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQE 214
Query: 120 NKLDAVNAASFGKLIRSVFIGLRTRRLGTR 149
+KLD VNAASFGKLIRS+F+GLRTRRLGTR
Sbjct: 215 HKLDPVNAASFGKLIRSIFMGLRTRRLGTR 244
>sp|P48380|RFX3_HUMAN Transcription factor RFX3 OS=Homo sapiens GN=RFX3 PE=1 SV=2
Length = 749
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 92/150 (61%), Gaps = 25/150 (16%)
Query: 2 VQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTEVAYIVDEPAQATT 61
+Q+ QLI + GTYLI ++E + H+ T AS PA
Sbjct: 118 IQMGVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRAS----------------PATIEM 161
Query: 62 A--TSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAE 119
A T D LS +H + + + +QWL+DNYETAEGVSLPRS+L+NHY+RHC E
Sbjct: 162 AIETLQKSDGLS-------THRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQE 214
Query: 120 NKLDAVNAASFGKLIRSVFIGLRTRRLGTR 149
+KLD VNAASFGKLIRS+F+GLRTRRLGTR
Sbjct: 215 HKLDPVNAASFGKLIRSIFMGLRTRRLGTR 244
>sp|Q0V9K5|RFX3_XENTR Transcription factor RFX3 OS=Xenopus tropicalis GN=rfx3 PE=2 SV=2
Length = 749
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 91/150 (60%), Gaps = 25/150 (16%)
Query: 2 VQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTEVAYIVDEPAQATT 61
+Q+ Q+I + GTYLI +E + H+ T AS PA
Sbjct: 118 IQMGVTGGQIISSTGGTYLIGNAMENSGHSVSHTTRAS----------------PATIEM 161
Query: 62 A--TSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAE 119
A T D LS SH + + + +QWL+DNYETAEGVSLPRS+L+NHY+RHC E
Sbjct: 162 AIETLQKSDGLS-------SHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQE 214
Query: 120 NKLDAVNAASFGKLIRSVFIGLRTRRLGTR 149
+KLD VNAASFGKLIRS+F+GLRTRRLGTR
Sbjct: 215 HKLDPVNAASFGKLIRSIFMGLRTRRLGTR 244
>sp|Q4R3I8|RFX3_MACFA Transcription factor RFX3 OS=Macaca fascicularis GN=RFX3 PE=2 SV=1
Length = 749
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 94/148 (63%), Gaps = 21/148 (14%)
Query: 2 VQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTEVAYIVDEPAQATT 61
+Q+ QLI + GTYLI ++E + H+ T +R SP E+A
Sbjct: 118 IQMGVTGGQLISSSGGTYLIGNSMENSGHS---VTHTTRASP-ATIEMA----------I 163
Query: 62 ATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENK 121
T D LS +H + + + +QWL+DNYETAEGVSLPRS+L++HY+RHC E+K
Sbjct: 164 ETLQKSDGLS-------THRSSLLNSHLQWLLDNYETAEGVSLPRSTLYDHYLRHCQEHK 216
Query: 122 LDAVNAASFGKLIRSVFIGLRTRRLGTR 149
LD VNAASFGKLIRS+F+GLRTRRLGTR
Sbjct: 217 LDPVNAASFGKLIRSIFMGLRTRRLGTR 244
>sp|Q32NR3|RFX2_XENLA DNA-binding protein RFX2 OS=Xenopus laevis GN=rfx2 PE=2 SV=1
Length = 694
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 66/76 (86%)
Query: 74 NQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKL 133
N+ SH + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC ++KLD VNAASFGKL
Sbjct: 160 NEGITSHKSSLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQDHKLDPVNAASFGKL 219
Query: 134 IRSVFIGLRTRRLGTR 149
IRSVF+GLRTRRLGTR
Sbjct: 220 IRSVFMGLRTRRLGTR 235
>sp|B1WAV2|RFX2_XENTR DNA-binding protein RFX2 OS=Xenopus tropicalis GN=rfx2 PE=2 SV=1
Length = 694
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 66/76 (86%)
Query: 74 NQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKL 133
N+ SH + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC ++KLD VNAASFGKL
Sbjct: 160 NEGITSHKSSLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQDHKLDPVNAASFGKL 219
Query: 134 IRSVFIGLRTRRLGTR 149
IRSVF+GLRTRRLGTR
Sbjct: 220 IRSVFMGLRTRRLGTR 235
>sp|P48378|RFX2_HUMAN DNA-binding protein RFX2 OS=Homo sapiens GN=RFX2 PE=2 SV=2
Length = 723
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 64/71 (90%)
Query: 79 SHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
SH + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KLD VNAASFGKLIRSVF
Sbjct: 190 SHKSGLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVF 249
Query: 139 IGLRTRRLGTR 149
+GLRTRRLGTR
Sbjct: 250 MGLRTRRLGTR 260
>sp|Q4R3Z4|RFX2_MACFA DNA-binding protein RFX2 OS=Macaca fascicularis GN=RFX2 PE=2 SV=1
Length = 723
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 64/71 (90%)
Query: 79 SHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
SH + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KLD VNAASFGKLIRSVF
Sbjct: 190 SHKSGLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVF 249
Query: 139 IGLRTRRLGTR 149
+GLRTRRLGTR
Sbjct: 250 MGLRTRRLGTR 260
>sp|Q5RDR2|RFX2_PONAB DNA-binding protein RFX2 OS=Pongo abelii GN=RFX2 PE=2 SV=1
Length = 704
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 64/71 (90%)
Query: 79 SHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
SH + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KLD VNAASFGKLIRSVF
Sbjct: 190 SHKSGLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVF 249
Query: 139 IGLRTRRLGTR 149
+GLRTRRLGTR
Sbjct: 250 MGLRTRRLGTR 260
>sp|A6QLW9|RFX2_BOVIN DNA-binding protein RFX2 OS=Bos taurus GN=RFX2 PE=2 SV=1
Length = 707
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 64/71 (90%)
Query: 79 SHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
SH + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KLD VNAASFGKLIRSVF
Sbjct: 195 SHKSGLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVF 254
Query: 139 IGLRTRRLGTR 149
+GLRTRRLGTR
Sbjct: 255 MGLRTRRLGTR 265
>sp|Q5EAP5|RFX2_DANRE DNA-binding protein RFX2 OS=Danio rerio GN=rfx2 PE=2 SV=1
Length = 734
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 63/71 (88%)
Query: 79 SHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
+H + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC E KLD VNAASFGKLIRSVF
Sbjct: 195 THKSSLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEQKLDPVNAASFGKLIRSVF 254
Query: 139 IGLRTRRLGTR 149
+GLRTRRLGTR
Sbjct: 255 MGLRTRRLGTR 265
>sp|A0JMF8|RFX3_DANRE Transcription factor RFX3 OS=Danio rerio GN=rfx3 PE=2 SV=1
Length = 765
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/66 (77%), Positives = 60/66 (90%)
Query: 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGT 148
+QWL+DNYETAEGVSLPRS+L+NHY+RHC E KLD VNAASFGKLIRS+F+GLRTRRLGT
Sbjct: 190 LQWLLDNYETAEGVSLPRSTLYNHYLRHCQEQKLDPVNAASFGKLIRSIFMGLRTRRLGT 249
Query: 149 RRGWRF 154
R ++
Sbjct: 250 RGNSKY 255
>sp|P48379|RFX2_MOUSE DNA-binding protein RFX2 OS=Mus musculus GN=Rfx2 PE=2 SV=2
Length = 717
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 59/61 (96%)
Query: 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGT 148
+QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KL+ VNAASFGKLIRSVF+GLRTRRLGT
Sbjct: 195 LQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLEPVNAASFGKLIRSVFMGLRTRRLGT 254
Query: 149 R 149
R
Sbjct: 255 R 255
>sp|Q09555|DAF19_CAEEL RFX-like transcription factor daf-19 OS=Caenorhabditis elegans
GN=daf-19 PE=2 SV=3
Length = 805
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 76/114 (66%), Gaps = 13/114 (11%)
Query: 42 SPHENTEVAYIVDEPAQATTATSNTGDPLS-PDNQASLSHVTKISPATVQWLIDNYETAE 100
SP +N Y+V PA + + + D ++ P+NQ + SPATV WL +NYE E
Sbjct: 224 SPQDN--APYLV--PAPQSPVSIDDADSINLPNNQ-------RASPATVNWLFENYEIGE 272
Query: 101 GVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGTRRGWRF 154
G SLPR L++HY +HCAE+++D VNAASFGKLIRSVF L+TRRLGTR ++
Sbjct: 273 G-SLPRCELYDHYKKHCAEHRMDPVNAASFGKLIRSVFHNLKTRRLGTRGNSKY 325
>sp|Q33E94|RFX4_HUMAN Transcription factor RFX4 OS=Homo sapiens GN=RFX4 PE=1 SV=2
Length = 735
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 3/75 (4%)
Query: 75 QASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLI 134
+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C +N VNAASFGK+I
Sbjct: 51 RASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKII 107
Query: 135 RSVFIGLRTRRLGTR 149
R F L TRRLGTR
Sbjct: 108 RQQFPQLTTRRLGTR 122
>sp|Q7TNK1|RFX4_MOUSE Transcription factor RFX4 OS=Mus musculus GN=Rfx4 PE=1 SV=1
Length = 735
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 49/65 (75%)
Query: 85 SPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTR 144
+PAT+QWL +NYE AEGV +PRS+L+ HY+ C +N VNAASFGK+IR F L TR
Sbjct: 58 TPATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTR 117
Query: 145 RLGTR 149
RLGTR
Sbjct: 118 RLGTR 122
>sp|A2BGA0|RFX4_DANRE Transcription factor RFX4 OS=Danio rerio GN=rfx4 PE=2 SV=1
Length = 735
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Query: 75 QASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLI 134
+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C + VNAASFGK+I
Sbjct: 51 RASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKLDSQPVNAASFGKII 107
Query: 135 RSVFIGLRTRRLGTR 149
R F L TRRLGTR
Sbjct: 108 RQQFPQLTTRRLGTR 122
>sp|Q5RJA1|RFX6_DANRE DNA-binding protein RFX6 OS=Danio rerio GN=rfx6 PE=2 SV=2
Length = 848
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 41/62 (66%)
Query: 88 TVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLG 147
T+QWL DNY EGV LPR L+ HY+ C + KLD AA+FGK IR F L TRRLG
Sbjct: 56 TLQWLEDNYIVCEGVCLPRCILYAHYLDFCRKEKLDPACAATFGKTIRQKFPLLTTRRLG 115
Query: 148 TR 149
TR
Sbjct: 116 TR 117
>sp|Q8C7R7|RFX6_MOUSE DNA-binding protein RFX6 OS=Mus musculus GN=Rfx6 PE=1 SV=2
Length = 927
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 41/62 (66%)
Query: 88 TVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLG 147
T+QWL DNY EGV LPR L+ HY+ C + KL+ AA+FGK IR F L TRRLG
Sbjct: 123 TLQWLEDNYIVCEGVCLPRCILYAHYLDFCRKEKLEPACAATFGKTIRQKFPLLTTRRLG 182
Query: 148 TR 149
TR
Sbjct: 183 TR 184
>sp|D2HNW6|RFX6_AILME DNA-binding protein RFX6 OS=Ailuropoda melanoleuca GN=RFX6 PE=3
SV=2
Length = 928
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 41/62 (66%)
Query: 88 TVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLG 147
T+QWL +NY EGV LPR L+ HY+ C + KL+ AA+FGK IR F L TRRLG
Sbjct: 124 TLQWLEENYIVCEGVCLPRCILYAHYLDFCRKEKLEPACAATFGKTIRQKFPLLTTRRLG 183
Query: 148 TR 149
TR
Sbjct: 184 TR 185
>sp|Q8HWS3|RFX6_HUMAN DNA-binding protein RFX6 OS=Homo sapiens GN=RFX6 PE=1 SV=2
Length = 928
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 41/62 (66%)
Query: 88 TVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLG 147
T+QWL +NY EGV LPR L+ HY+ C + KL+ AA+FGK IR F L TRRLG
Sbjct: 124 TLQWLEENYIVCEGVCLPRCILYAHYLDFCRKEKLEPACAATFGKTIRQKFPLLTTRRLG 183
Query: 148 TR 149
TR
Sbjct: 184 TR 185
>sp|D3YU81|RFX8_MOUSE DNA-binding protein RFX8 OS=Mus musculus GN=Rfx8 PE=3 SV=1
Length = 596
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGT 148
+QWL+DN+ EG S+PR ++ Y+ C ++ + VN A+FGKL+R VF L TRRLGT
Sbjct: 20 IQWLVDNFCICEGFSVPRCLMYEIYVETCGQSAQNQVNPATFGKLVRLVFPDLGTRRLGT 79
Query: 149 RRGWRF 154
R R+
Sbjct: 80 RGSARY 85
>sp|Q6ZV50|RFX8_HUMAN DNA-binding protein RFX8 OS=Homo sapiens GN=RFX8 PE=2 SV=2
Length = 586
Score = 70.9 bits (172), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 87 ATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRL 146
+QWL+DN+ E S+PR ++ Y+ C +N + VN A+FGKL+R VF L TRRL
Sbjct: 21 GVIQWLVDNFCICEECSVPRCLMYEIYVETCGQNTENQVNPATFGKLVRLVFPDLGTRRL 80
Query: 147 GTRRGWRF 154
GTR R+
Sbjct: 81 GTRGSARY 88
>sp|P48743|RFX1_YEAST RFX-like DNA-binding protein RFX1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RFX1 PE=1 SV=2
Length = 811
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 91 WLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGTR 149
WL+ N ++ +PR +F Y C++N L ++ AS GKLIR+VF L TRRLG R
Sbjct: 288 WLMKNCKSQHDSYVPRGKIFAQYASSCSQNNLKPLSQASLGKLIRTVFPDLTTRRLGMR 346
>sp|Q2KHR2|RFX7_HUMAN DNA-binding protein RFX7 OS=Homo sapiens GN=RFX7 PE=1 SV=1
Length = 1363
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 91 WLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGTRR 150
W+ + E SLP+ +++ Y +C ++AA FGK++++VF ++ RRLGTR
Sbjct: 14 WIRNTLEEHPETSLPKQEVYDEYKSYCDNLGYHPLSAADFGKIMKNVFPNMKARRLGTRG 73
Query: 151 GWRFLSS 157
++ S
Sbjct: 74 KSKYCYS 80
>sp|P48383|SAK1_SCHPO Protein sak1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sak1 PE=1 SV=2
Length = 766
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGT 148
+ WL E + ++ R+ ++ HY+ C + +N+ASFGKL+R +F ++TRRLG
Sbjct: 102 ICWLKRACEEQQDAAVQRNQIYAHYVEICNSLHIKPLNSASFGKLVRLLFPSIKTRRLGM 161
Query: 149 R 149
R
Sbjct: 162 R 162
>sp|Q9JL61|RFX5_MOUSE DNA-binding protein Rfx5 OS=Mus musculus GN=Rfx5 PE=1 SV=2
Length = 658
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 90 QWLIDNYETAEGVSLPRSSLFNHYIRHCAE-NKLDAVNAASFGKLIRSVFIGLRTRRLGT 148
+W+ ++ E LP+ S+++ Y ++C ++ A+FGK+IR +F ++ RRLG
Sbjct: 93 RWIRNHLEEHMDTCLPKQSVYDAYRKYCESLACCRPLSTANFGKIIREIFPDIKARRLGG 152
Query: 149 RRGWRFLSS 157
R ++ S
Sbjct: 153 RGQSKYCYS 161
>sp|P48382|RFX5_HUMAN DNA-binding protein RFX5 OS=Homo sapiens GN=RFX5 PE=1 SV=1
Length = 616
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 90 QWLIDNYETAEGVSLPRSSLFNHYIRHCAE-NKLDAVNAASFGKLIRSVFIGLRTRRLGT 148
+W+ ++ E LP+ S+++ Y ++C ++ A+FGK+IR +F ++ RRLG
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACCRPLSTANFGKIIREIFPDIKARRLGG 153
Query: 149 RRGWRFLSS 157
R ++ S
Sbjct: 154 RGQSKYCYS 162
>sp|O33011|Y1624_MYCLE Uncharacterized protein ML1624 OS=Mycobacterium leprae (strain TN)
GN=ML1624 PE=4 SV=1
Length = 596
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 63 TSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSL 109
TS T + D+ S + +T+ + T QWLI +EGV +PR S+
Sbjct: 319 TSETPTLVLSDDPGSSARITEFAKNTSQWLIAVRMVSEGVDIPRLSV 365
>sp|Q0ZB81|MTNA_BOMMO Methylthioribose-1-phosphate isomerase OS=Bombyx mori PE=2 SV=1
Length = 364
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 56 PAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIR 115
PA A + LSPDN++S ++ + + +L+ TA + L L N
Sbjct: 49 PAIAIVGCLSLAVELSPDNESSKKNMRQEIEGKLNYLVSARPTAVNIKLAADELINLANT 108
Query: 116 HCAENKLDAVNAASFGKLIRSVFIG 140
CA++ + A ++ + FIG
Sbjct: 109 LCADDSISA-------EIFKERFIG 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,084,380
Number of Sequences: 539616
Number of extensions: 2069656
Number of successful extensions: 6223
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6131
Number of HSP's gapped (non-prelim): 92
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)