Query psy7155
Match_columns 169
No_of_seqs 116 out of 152
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 19:35:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02257 RFX_DNA_binding: RFX 100.0 3.2E-39 7E-44 237.7 3.5 77 87-163 7-83 (85)
2 KOG3712|consensus 100.0 1.9E-36 4.2E-41 286.6 9.0 136 2-163 141-277 (736)
3 PF03288 Pox_D5: Poxvirus D5 p 98.3 7.5E-07 1.6E-11 62.9 3.6 54 87-140 5-59 (86)
4 PRK07078 hypothetical protein; 97.6 8.5E-05 1.8E-09 72.4 5.9 71 89-164 678-748 (759)
5 PRK14709 hypothetical protein; 97.3 0.00044 9.6E-09 63.7 5.6 69 89-163 390-461 (469)
6 TIGR01613 primase_Cterm phage/ 96.8 0.0011 2.5E-08 56.5 3.8 42 89-130 263-304 (304)
7 PF09079 Cdc6_C: CDC6, C termi 91.8 0.29 6.3E-06 34.5 4.0 46 101-146 13-59 (85)
8 KOG3712|consensus 89.4 0.061 1.3E-06 53.1 -1.6 64 89-156 93-156 (736)
9 COG3378 Phage associated DNA p 89.0 0.32 7E-06 46.2 2.9 56 89-144 416-478 (517)
10 cd08768 Cdc6_C Winged-helix do 87.2 1.6 3.5E-05 30.2 4.8 42 102-143 21-63 (87)
11 TIGR02928 orc1/cdc6 family rep 70.4 9.5 0.00021 32.5 5.0 48 89-137 294-341 (365)
12 PF13454 NAD_binding_9: FAD-NA 52.8 20 0.00044 27.6 3.6 34 86-120 68-106 (156)
13 cd04444 DEP_PLEK2 DEP (Disheve 41.9 35 0.00076 26.7 3.4 49 80-133 29-77 (109)
14 PRK00411 cdc6 cell division co 40.8 45 0.00098 28.8 4.3 54 102-155 314-371 (394)
15 KOG2227|consensus 36.3 31 0.00066 33.5 2.7 33 103-135 448-480 (529)
16 PF04328 DUF466: Protein of un 34.8 34 0.00075 24.1 2.2 26 107-132 22-49 (65)
17 PF12872 OST-HTH: OST-HTH/LOTU 28.4 45 0.00098 22.2 1.8 25 124-148 23-47 (74)
18 PF06842 DUF1242: Protein of u 27.1 42 0.0009 21.6 1.4 18 133-150 14-33 (36)
19 smart00718 DM4_12 DM4/DM12 fam 24.4 1E+02 0.0022 22.8 3.3 43 89-140 13-56 (95)
No 1
>PF02257 RFX_DNA_binding: RFX DNA-binding domain; InterPro: IPR003150 RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DP7_P 2KW3_A.
Probab=100.00 E-value=3.2e-39 Score=237.71 Aligned_cols=77 Identities=48% Similarity=0.825 Sum_probs=64.6
Q ss_pred HHHHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHHcCCCCcccCCCCCCcceeeccccccc
Q psy7155 87 ATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGTRRGWRFLSSSQSALT 163 (169)
Q Consensus 87 at~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~vFP~l~TRRLGtRG~SKYHY~Gir~~~ 163 (169)
.|++||++|||.++++||||+.||++|+.+|++++++|||+|+|||+||.+||+++|||||+||+|||||+||+++.
T Consensus 7 ~a~~WL~~~~e~~~~~svpR~~lY~~Y~~~C~~~~~~pln~AsFGKlir~vFP~l~~RRLG~RG~SkYhY~Gir~k~ 83 (85)
T PF02257_consen 7 FAMQWLRENYEESPGVSVPRSDLYAHYLSFCEKNGIKPLNAASFGKLIRQVFPNLKTRRLGTRGQSKYHYCGIRLKP 83 (85)
T ss_dssp --HHHHHHHEEEEEEEEEEHHHHHHHHHHHHHHTT-----HHHHHHHHHHHSTT-EEEEESSTT--EEEEEEEEE--
T ss_pred HHHHHHHHHcccCCCCccchHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHcCCCcccccccCCCcceEEEeEEecC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG3712|consensus
Probab=100.00 E-value=1.9e-36 Score=286.59 Aligned_cols=136 Identities=43% Similarity=0.705 Sum_probs=115.5
Q ss_pred ceeecCCceeeeccCceeeeecccCCCCcceeeeecccCCCCCCccceeeeeeCCCccccccCCCCCCCCCCC-cccccc
Q psy7155 2 VQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTEVAYIVDEPAQATTATSNTGDPLSPDN-QASLSH 80 (169)
Q Consensus 2 ~~~~~~~~q~~~~~~~~y~i~~~~~~~~~h~~~~t~~~r~sp~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~ 80 (169)
+.|.+++++.+++.++.|+|+.++...+| -.+++. +.+|++.+- .+. ..+..+
T Consensus 141 ~~t~~~~~k~vs~~~~~~~~~~~~~~~~~-~~~~~~--~~~p~~~s~-----------------------~~~~~~~~~~ 194 (736)
T KOG3712|consen 141 IGTRVTGSKAVSSAGKGYLIQGNMQFSRH-DKAHTS--SGSPQSPSS-----------------------LDKSSNNSTN 194 (736)
T ss_pred ccccccchhhhhccccceeeccccccccc-cceeec--ccCCCCccc-----------------------cccccccccc
Confidence 46889999999988889999988887775 335534 555555211 111 133446
Q ss_pred ccCCCHHHHHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHHcCCCCcccCCCCCCcceeecccc
Q psy7155 81 VTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGTRRGWRFLSSSQS 160 (169)
Q Consensus 81 ~~r~spat~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~vFP~l~TRRLGtRG~SKYHY~Gir 160 (169)
.++..++|++||++|||..+|+||||+.+|+||++||++++++|||+|+||||||++||+|+|||||+||||||||+|||
T Consensus 195 ~~~~~~~tlqWL~~nyes~eg~~lPR~sly~hY~~~C~e~~l~PvsaAsfGKlIRsvFp~L~TRRLGtRGqSKYHYyGir 274 (736)
T KOG3712|consen 195 SNESSPATLQWLLDNYESAEGVSLPRSSLYDHYLKHCQEHNLDPVSAASFGKLIRSVFPDLKTRRLGTRGQSKYHYYGIR 274 (736)
T ss_pred chhhhHHHHHHHHhccccccccccchHHHHHHHHHHHHhhCCCCcchHHHhHHHHHHcccchhhhcccCCCCceeeeeee
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy7155 161 ALT 163 (169)
Q Consensus 161 ~~~ 163 (169)
.+.
T Consensus 275 vk~ 277 (736)
T KOG3712|consen 275 VKP 277 (736)
T ss_pred cCC
Confidence 875
No 3
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=98.28 E-value=7.5e-07 Score=62.86 Aligned_cols=54 Identities=22% Similarity=0.481 Sum_probs=42.3
Q ss_pred HHHHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCc-CCchhhhHHHHHHcCC
Q psy7155 87 ATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDA-VNAASFGKLIRSVFIG 140 (169)
Q Consensus 87 at~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~P-lnaAsFGKLIR~vFP~ 140 (169)
...+|+.+.|+...+..+|+..||+.|..+|++++..| ++...|+|-|+..+|.
T Consensus 5 ~V~~F~~e~~~~~~~~~v~~~~lY~~Y~~wc~~ng~~~~ls~~~F~~~L~~~~~~ 59 (86)
T PF03288_consen 5 PVLAFIEECCERDPGDFVPSKDLYDAYKEWCEENGYKPPLSKRKFGKELKQYFPE 59 (86)
T ss_dssp HHHHHGGGEEE-S--S--TTTBHHHHHHHHHHHTT-S----HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhhh
Confidence 45789999999999999999999999999999999998 9999999999999886
No 4
>PRK07078 hypothetical protein; Validated
Probab=97.63 E-value=8.5e-05 Score=72.39 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=60.2
Q ss_pred HHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHHcCCCCcccCCCCCCcceeeccccccce
Q psy7155 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGTRRGWRFLSSSQSALTR 164 (169)
Q Consensus 89 ~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~vFP~l~TRRLGtRG~SKYHY~Gir~~~r 164 (169)
.+||.+.|+..++..++...+|+.|..+|.+++..|++...|+|.|+.. ++..+|.. +.++.|.||+.+..
T Consensus 678 ~~Fl~e~c~~~~~~~~~~~~LY~~Y~~wc~~~G~~~~s~k~F~~~L~~~--Gf~~~r~~---~g~~~~~Gi~L~~~ 748 (759)
T PRK07078 678 GQWIEERCERGANAKELTAELFNDWKEWAERAGEFVGSQKRFSDLLATR--GFEKWRLT---GGLRGFRGIGLKPK 748 (759)
T ss_pred HHHHHHhceeCCCCceeHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc--CCceeecc---CCcEEEeceEEecc
Confidence 5799999999999999999999999999999999999999999999987 55555532 33567999987753
No 5
>PRK14709 hypothetical protein; Provisional
Probab=97.27 E-value=0.00044 Score=63.72 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=53.9
Q ss_pred HHHHHhhcccCCCcccChhhhHHHHHHHHh---hcCCCcCCchhhhHHHHHHcCCCCcccCCCCCCcceeeccccccc
Q psy7155 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCA---ENKLDAVNAASFGKLIRSVFIGLRTRRLGTRRGWRFLSSSQSALT 163 (169)
Q Consensus 89 ~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~---~~~l~PlnaAsFGKLIR~vFP~l~TRRLGtRG~SKYHY~Gir~~~ 163 (169)
.+||.+.|+..++..++...+|+.|..+|+ +++.+|++...|+|.|+.. +.+.+| .+....|.||+.+.
T Consensus 390 ~~Fl~e~c~~~~~~~~~~~~~~~~Y~~w~~~~~~~g~~~~s~~~F~~~L~~~--G~~~~r----~~~~~~~~Gi~L~~ 461 (469)
T PRK14709 390 GQWLEERCIVDPGNPVCWDVLQDLYASWCEFARAEGEPAGTAKEFGERMEKL--GFKKDR----KNRGRGFRGIQLRP 461 (469)
T ss_pred HHHHHhheEeCCCCccchHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHc--CCCcee----cCCCeEEeeeEEcc
Confidence 589999999999988998888777777666 7888999999999999985 334443 22344699998765
No 6
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.84 E-value=0.0011 Score=56.48 Aligned_cols=42 Identities=19% Similarity=0.458 Sum_probs=39.8
Q ss_pred HHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCcCCchhh
Q psy7155 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASF 130 (169)
Q Consensus 89 ~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsF 130 (169)
.+||.++|+..++..+|+..+|+.|..+|++++..|++...|
T Consensus 263 ~~Fi~e~~~~~~~~~~~~~~ly~~y~~wc~~~g~~~~s~~~f 304 (304)
T TIGR01613 263 ARFLEECCDDSEGEKVPVRFVYEAYKEWCEEGGYPILSRNKF 304 (304)
T ss_pred HHHHHhheEeCCCcEEEHHHHHHHHHHHHHHcCCCccccCCC
Confidence 689999999999999999999999999999999999998877
No 7
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=91.79 E-value=0.29 Score=34.48 Aligned_cols=46 Identities=13% Similarity=0.335 Sum_probs=33.2
Q ss_pred CcccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHH-cCCCCcccC
Q psy7155 101 GVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSV-FIGLRTRRL 146 (169)
Q Consensus 101 g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~v-FP~l~TRRL 146 (169)
...++=..+|+.|...|+..+.+|++...|-.+++.. +-++-..+-
T Consensus 13 ~~~~~~~~vy~~Y~~lc~~~~~~pls~~r~~~~l~eL~~~gli~~~~ 59 (85)
T PF09079_consen 13 KEEVTTGEVYEVYEELCESLGVDPLSYRRFSDYLSELEMLGLIESER 59 (85)
T ss_dssp SSSEEHHHHHHHHHHHHHHTTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred CCceeHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 4567778899999999999999999999999988764 555444443
No 8
>KOG3712|consensus
Probab=89.44 E-value=0.061 Score=53.06 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=53.8
Q ss_pred HHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHHcCCCCcccCCCCCCcceee
Q psy7155 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGTRRGWRFLS 156 (169)
Q Consensus 89 ~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~vFP~l~TRRLGtRG~SKYHY 156 (169)
..|++. |...+. -+=+...+.+|.+.|......|.|+++| ..|.+|++++|||+|.++-++++|
T Consensus 93 ~~~~~~-y~~~e~-~~~~~~~~~s~~~~~gt~~~~~~~~~s~--~~~~~~~~~~t~~~~~k~vs~~~~ 156 (736)
T KOG3712|consen 93 ASAIRN-YPYSES-QMYANNIPASYFEKTGTRAQVPGNEASE--EHRVLSISIGTRVTGSKAVSSAGK 156 (736)
T ss_pred chhhhh-cccCcC-HHHhccCCcccccCCCCcCCCCcccccc--cceeecccccccccchhhhhcccc
Confidence 568887 433333 3677778899999999999999999999 677788899999999999999995
No 9
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=89.02 E-value=0.32 Score=46.20 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=45.8
Q ss_pred HHHHHhhcccCCCcccChhh------hHHHHHHHHhhcC-CCcCCchhhhHHHHHHcCCCCcc
Q psy7155 89 VQWLIDNYETAEGVSLPRSS------LFNHYIRHCAENK-LDAVNAASFGKLIRSVFIGLRTR 144 (169)
Q Consensus 89 ~~WL~~nyE~~~g~sVPR~~------lY~~Y~~~C~~~~-l~PlnaAsFGKLIR~vFP~l~TR 144 (169)
.+|+.+-|+..+..-.|-.. +|+.|+.+|+.++ ..+++.+.|||.+..++-.-..+
T Consensus 416 ~~F~~d~~~~~~~~~~~~~~~~~~~~ly~~y~~w~e~~G~~~~~s~~~F~~~l~~~~v~~~r~ 478 (517)
T COG3378 416 FQFCDDECVLGETDGTPTAFDNIVLELYEAYQEWCEANGYVVELSKTRFGKELPTKGVPKGRK 478 (517)
T ss_pred HHHHHHHhhccccccccccchhhhHHHHHHHHHHHHhcCCcccchhhhhhcccccccccccce
Confidence 68999999998876666665 9999999999999 66999999999988655444433
No 10
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=87.15 E-value=1.6 Score=30.20 Aligned_cols=42 Identities=17% Similarity=0.394 Sum_probs=34.2
Q ss_pred cccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHH-cCCCCc
Q psy7155 102 VSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSV-FIGLRT 143 (169)
Q Consensus 102 ~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~v-FP~l~T 143 (169)
..+.=..+|+.|...|+..+.+|++...|-.++... +-++-.
T Consensus 21 ~~~~~~~vy~~Y~~~c~~~~~~~l~~~~~~~~l~~L~~~gli~ 63 (87)
T cd08768 21 EEATTGEVYEVYEELCEEIGVDPLTQRRISDLLSELEMLGLLE 63 (87)
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCeE
Confidence 346678899999999999999999999999888754 444433
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=70.44 E-value=9.5 Score=32.53 Aligned_cols=48 Identities=8% Similarity=0.254 Sum_probs=35.3
Q ss_pred HHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHH
Q psy7155 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSV 137 (169)
Q Consensus 89 ~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~v 137 (169)
+.|+..-.+. .+..+.-..+|+.|...|+..+++|++-..|-..+...
T Consensus 294 l~ai~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l 341 (365)
T TIGR02928 294 LLAIANLAAN-DEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNEL 341 (365)
T ss_pred HHHHHHHHhc-CCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 4455433332 34456778899999999999999999999998777543
No 12
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=52.84 E-value=20 Score=27.55 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcc-----cCCCcccChhhhHHHHHHHHhhc
Q psy7155 86 PATVQWLIDNYE-----TAEGVSLPRSSLFNHYIRHCAEN 120 (169)
Q Consensus 86 pat~~WL~~nyE-----~~~g~sVPR~~lY~~Y~~~C~~~ 120 (169)
+.-..||.++.+ ...+..+||. +|-+|++.+-+.
T Consensus 68 ~~f~~Wl~~~~~~~~~~~~~~~f~pR~-~~G~YL~~~~~~ 106 (156)
T PF13454_consen 68 DDFVDWLRANGADEAEEIDPDDFPPRA-LFGEYLRDRFDR 106 (156)
T ss_pred CCHHHHHHhcCcccccccccccCCCHH-HHHHHHHHHHHH
Confidence 678899999994 4556678876 999999887443
No 13
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=41.87 E-value=35 Score=26.65 Aligned_cols=49 Identities=29% Similarity=0.302 Sum_probs=33.8
Q ss_pred cccCCCHHHHHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCcCCchhhhHH
Q psy7155 80 HVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKL 133 (169)
Q Consensus 80 ~~~r~spat~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKL 133 (169)
+.+=+..+.+.||.+|++ .++|.+-..-=...-++--++||-..+|||.
T Consensus 29 ~~CF~Gse~VDWLv~~~~-----~i~R~EAv~l~q~Lmd~gli~hV~~~s~~~~ 77 (109)
T cd04444 29 KKTFLGSALVDWLISNSF-----AASRLEAVTLASMLMEENFLRPVGVRSMGAI 77 (109)
T ss_pred cccccchHHHHHHHHCCC-----CCCHHHHHHHHHHHHhCCchhhHHHHhhhhh
Confidence 445677789999999977 4467754433333334446679999999987
No 14
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=40.79 E-value=45 Score=28.83 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=38.2
Q ss_pred cccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHHc-CCC-Ccc--cCCCCCCccee
Q psy7155 102 VSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF-IGL-RTR--RLGTRRGWRFL 155 (169)
Q Consensus 102 ~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~vF-P~l-~TR--RLGtRG~SKYH 155 (169)
..+.-..+|+.|...|.+.+++|++...|-..++..= -+| .++ .-|.+|..+..
T Consensus 314 ~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~~~~~g~~g~~~~~ 371 (394)
T PRK00411 314 DEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTRYSGKGGRGRTRLI 371 (394)
T ss_pred CcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEEEecCCCCCCeEEE
Confidence 3577788999999999999999999999987666542 232 222 23555655443
No 15
>KOG2227|consensus
Probab=36.29 E-value=31 Score=33.55 Aligned_cols=33 Identities=12% Similarity=0.490 Sum_probs=28.4
Q ss_pred ccChhhhHHHHHHHHhhcCCCcCCchhhhHHHH
Q psy7155 103 SLPRSSLFNHYIRHCAENKLDAVNAASFGKLIR 135 (169)
Q Consensus 103 sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR 135 (169)
-+-+.++|++|...|++..+-|+..+.|--+.-
T Consensus 448 d~s~~eL~e~Y~k~C~~~~I~~ld~tEF~~i~~ 480 (529)
T KOG2227|consen 448 DVSIAELYEAYLKACQKREIAPLDRTEFLSICD 480 (529)
T ss_pred cccHHHHHHHHHHHHHhccCCcccHHHHHHHHH
Confidence 456789999999999999999999999976543
No 16
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=34.78 E-value=34 Score=24.09 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHhhcCC--CcCCchhhhH
Q psy7155 107 SSLFNHYIRHCAENKL--DAVNAASFGK 132 (169)
Q Consensus 107 ~~lY~~Y~~~C~~~~l--~PlnaAsFGK 132 (169)
..-|+.|++|+..+.- .|++-..|=+
T Consensus 22 ~~~Ye~Yv~H~~~~HP~~p~ms~~eF~r 49 (65)
T PF04328_consen 22 EPDYERYVEHMRRHHPDEPPMSEREFFR 49 (65)
T ss_pred cHHHHHHHHHHHHHCcCCCCCCHHHHHH
Confidence 3469999999999955 4898888854
No 17
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=28.44 E-value=45 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=15.4
Q ss_pred cCCchhhhHHHHHHcCCCCcccCCC
Q psy7155 124 AVNAASFGKLIRSVFIGLRTRRLGT 148 (169)
Q Consensus 124 PlnaAsFGKLIR~vFP~l~TRRLGt 148 (169)
+++-+.|+..++..||.+..|..|.
T Consensus 23 ~v~ls~l~~~~~~~~~~f~~~~yG~ 47 (74)
T PF12872_consen 23 WVSLSQLGQEYKKKYPDFDPRDYGF 47 (74)
T ss_dssp SEEHHHHHHHHHHHHTT--TCCTTS
T ss_pred eEEHHHHHHHHHHHCCCCCccccCC
Confidence 5666667777776667777666663
No 18
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=27.09 E-value=42 Score=21.58 Aligned_cols=18 Identities=44% Similarity=0.645 Sum_probs=13.7
Q ss_pred HHHHHcCCCCcc--cCCCCC
Q psy7155 133 LIRSVFIGLRTR--RLGTRR 150 (169)
Q Consensus 133 LIR~vFP~l~TR--RLGtRG 150 (169)
-||.+||++-.| +-|.+|
T Consensus 14 Yir~~~P~l~dr~kk~G~~G 33 (36)
T PF06842_consen 14 YIRSIFPSLLDRNKKTGFRG 33 (36)
T ss_pred hHHhHCccccccCCCccccc
Confidence 479999999874 367666
No 19
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=24.42 E-value=1e+02 Score=22.77 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=31.2
Q ss_pred HHHHHhhcccCCCcccChhhhHHHHHHHHhhcC-CCcCCchhhhHHHHHHcCC
Q psy7155 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENK-LDAVNAASFGKLIRSVFIG 140 (169)
Q Consensus 89 ~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~-l~PlnaAsFGKLIR~vFP~ 140 (169)
+.-+.+++--+...||-|. .|+... ...-|. .||++++.+|.=
T Consensus 13 lE~~l~~~G~~g~~ClLR~--------ICE~a~~~~~~~G-ll~ell~ilftp 56 (95)
T smart00718 13 LENLLDQLGFNGRACLLRA--------ICESAQKLDDHRG-LLGELLRIVLTP 56 (95)
T ss_pred HHHHHHHcCCCchhhHHHH--------HHHcccccccccc-hHHHHHHHhhcC
Confidence 3344555555666888888 898887 455555 999999999954
Done!