Query psy7155
Match_columns 169
No_of_seqs 116 out of 152
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 19:35:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dp7_P MHC class II transcript 100.0 1.3E-38 4.5E-43 229.0 3.9 75 88-162 1-75 (76)
2 1ka8_A Putative P4-specific DN 96.4 0.0025 8.6E-08 47.8 3.7 37 104-140 32-69 (100)
3 3ebr_A Uncharacterized RMLC-li 53.9 6.2 0.00021 30.2 2.1 24 108-131 135-158 (159)
4 1fnn_A CDC6P, cell division co 32.9 72 0.0025 25.3 5.3 42 103-144 308-350 (389)
5 2qby_A CDC6 homolog 1, cell di 27.8 91 0.0031 24.4 5.0 47 89-136 292-338 (386)
6 2v1u_A Cell division control p 21.7 1.8E+02 0.006 22.8 5.7 42 103-144 308-350 (387)
7 2g9p_A Antimicrobial peptide l 20.9 40 0.0014 19.4 1.2 9 129-137 2-10 (26)
8 3ol0_A De novo designed monome 18.8 92 0.0032 20.1 2.8 33 11-48 9-41 (48)
9 3keo_A Redox-sensing transcrip 17.7 1E+02 0.0035 24.7 3.5 50 102-156 10-66 (212)
10 4fcy_A Transposase; rnaseh, DD 15.9 2.9E+02 0.0099 23.6 6.1 55 82-138 102-156 (529)
No 1
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=100.00 E-value=1.3e-38 Score=229.03 Aligned_cols=75 Identities=68% Similarity=1.046 Sum_probs=73.6
Q ss_pred HHHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHHcCCCCcccCCCCCCcceeecccccc
Q psy7155 88 TVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLGTRRGWRFLSSSQSAL 162 (169)
Q Consensus 88 t~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~vFP~l~TRRLGtRG~SKYHY~Gir~~ 162 (169)
|++||++|||.++++||||++||++|+.+|++++++|||+|+|||+||.+||+|+|||||+||+|||||+|||++
T Consensus 1 t~~Wl~~~~e~~~~~svpR~~vY~~Y~~~C~~~~~~pl~~a~FGK~ir~~FP~l~trRLg~rG~skyhy~Girlk 75 (76)
T 1dp7_P 1 TVQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIK 75 (76)
T ss_dssp CHHHHHHHEEEEEEEEEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHSTTCEEEEESSTTCCEEEEEEEEEC
T ss_pred CceeHhhhcEECCCceechHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHCCCceeeeccccCCccEEEEeeEeC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>1ka8_A Putative P4-specific DNA primase; winged helix, transferase; 2.95A {Enterobacteria phage P4} SCOP: a.4.5.20
Probab=96.41 E-value=0.0025 Score=47.82 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=33.7
Q ss_pred cChhhhHHHHHHHHhhcCCC-cCCchhhhHHHHHHcCC
Q psy7155 104 LPRSSLFNHYIRHCAENKLD-AVNAASFGKLIRSVFIG 140 (169)
Q Consensus 104 VPR~~lY~~Y~~~C~~~~l~-PlnaAsFGKLIR~vFP~ 140 (169)
-||.-+|..|+.+|+.++++ ||+=.+|||-|+.++-.
T Consensus 32 ~pR~yLYhAYLaymea~g~~~pLsl~~Fg~~l~~alke 69 (100)
T 1ka8_A 32 NYRKYLYHAYLAYMEANGYRNVLSLKMFGLGLPVMLKE 69 (100)
T ss_dssp CTTTBHHHHHHHHHHHTTCSCCCCHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Confidence 47888999999999999999 99999999999988743
No 3
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=53.89 E-value=6.2 Score=30.21 Aligned_cols=24 Identities=13% Similarity=0.481 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhhcCCCcCCchhhh
Q psy7155 108 SLFNHYIRHCAENKLDAVNAASFG 131 (169)
Q Consensus 108 ~lY~~Y~~~C~~~~l~PlnaAsFG 131 (169)
...+.|.++|+++++.|.-.+.|+
T Consensus 135 ~~~~~~~~~~~~~g~~~~~~~~~~ 158 (159)
T 3ebr_A 135 TSMDRYLNYCKAHGIRPKDLSTFE 158 (159)
T ss_dssp HHHHHHHHHHHHTTCCCCCCSSCC
T ss_pred HHHHHHHHHHHHcCCCcccccccc
Confidence 367899999999999999888886
No 4
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=32.92 E-value=72 Score=25.28 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=34.0
Q ss_pred ccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHH-cCCCCcc
Q psy7155 103 SLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSV-FIGLRTR 144 (169)
Q Consensus 103 sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~v-FP~l~TR 144 (169)
.+....+|+.|...|...++.|++...|-+.+... .-++=..
T Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 308 YITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp CEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 67778999999999999999999999999887764 3444333
No 5
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=27.81 E-value=91 Score=24.42 Aligned_cols=47 Identities=11% Similarity=0.260 Sum_probs=31.4
Q ss_pred HHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHH
Q psy7155 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136 (169)
Q Consensus 89 ~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~ 136 (169)
+.|+.+.++.+.+ .+....+|..|...|+..+..|++...|.+.++.
T Consensus 292 l~ai~~~~~~g~~-~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~ 338 (386)
T 2qby_A 292 LMAVVSISSEENV-VSTTGAVYETYLNICKKLGVEAVTQRRVSDIINE 338 (386)
T ss_dssp HHHHHHHC------CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-ceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 4455543333322 2446789999999999999889988888776654
No 6
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=21.73 E-value=1.8e+02 Score=22.80 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=31.5
Q ss_pred ccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHH-cCCCCcc
Q psy7155 103 SLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSV-FIGLRTR 144 (169)
Q Consensus 103 sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~v-FP~l~TR 144 (169)
.+....+|..|...|...+..|++...|-..++.. .-++-..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 308 PASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp CEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 45567899999999999998899988888776543 3344333
No 7
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=20.95 E-value=40 Score=19.38 Aligned_cols=9 Identities=56% Similarity=0.947 Sum_probs=6.8
Q ss_pred hhhHHHHHH
Q psy7155 129 SFGKLIRSV 137 (169)
Q Consensus 129 sFGKLIR~v 137 (169)
-|||+|+..
T Consensus 2 lfgklikkf 10 (26)
T 2g9p_A 2 LFGKLIKKF 10 (26)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 489999863
No 8
>3ol0_A De novo designed monomer trefoil-fold SUB-domain forms HOMO-trimer assembly; beta-trefoil, synthetic protein, function-COMP only; 1.48A {Synthetic construct}
Probab=18.80 E-value=92 Score=20.08 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=22.3
Q ss_pred eeeccCceeeeecccCCCCcceeeeecccCCCCCCccc
Q psy7155 11 LIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTE 48 (169)
Q Consensus 11 ~~~~~~~~y~i~~~~~~~~~h~~~~t~~~r~sp~~~~~ 48 (169)
|+-+.++.|..| +++|+ +|-+ |-.+.+|.+..+
T Consensus 9 ~~~~~~~Gf~Lq--I~PdG--~V~G-Tr~~~s~~SlLE 41 (48)
T 3ol0_A 9 LLKSTETGQYLR--INPDG--TVDG-TRDRSDPHIQFQ 41 (48)
T ss_dssp EEEETTTCCEEE--ECTTS--BEEE-ESCTTCGGGCEE
T ss_pred hheeccCcEEeE--ECCCC--CCcc-ccCCCCCcceEE
Confidence 455677889999 88887 5566 434557766444
No 9
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=17.71 E-value=1e+02 Score=24.73 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=38.7
Q ss_pred cccChhhhHHHHHHHHhhcCCCcCCchhhhHH-------HHHHcCCCCcccCCCCCCcceee
Q psy7155 102 VSLPRSSLFNHYIRHCAENKLDAVNAASFGKL-------IRSVFIGLRTRRLGTRRGWRFLS 156 (169)
Q Consensus 102 ~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKL-------IR~vFP~l~TRRLGtRG~SKYHY 156 (169)
..+-|--+|-+|++...+.+.+-+++..+++. ||.=|-.+ |--|+..|.|
T Consensus 10 ~ti~RL~~Y~r~l~~l~~~g~~~isS~ela~~~gv~~~qiRkDls~f-----g~~G~~g~GY 66 (212)
T 3keo_A 10 ATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYF-----GELGRRGFGY 66 (212)
T ss_dssp HHHTTHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHTT-----GGGTTTSSSE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEECHHHHHHHHCCCHHHHHHHHHHH-----hhcCCCCCCE
Confidence 34567789999999999999999999999986 45555443 5556666777
No 10
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=15.86 E-value=2.9e+02 Score=23.62 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=44.5
Q ss_pred cCCCHHHHHHHHhhcccCCCcccChhhhHHHHHHHHhhcCCCcCCchhhhHHHHHHc
Q psy7155 82 TKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138 (169)
Q Consensus 82 ~r~spat~~WL~~nyE~~~g~sVPR~~lY~~Y~~~C~~~~l~PlnaAsFGKLIR~vF 138 (169)
..+++.....+.+.|...+.-++ ..+|......|.+.++++-+-.+|-+.|+.+-
T Consensus 102 ~~~~~~~~~~i~~~yl~~~~~s~--~~~~~~~~~~~~~~g~~~PS~~tv~r~l~~~~ 156 (529)
T 4fcy_A 102 SEFDEDAWQFLIADYLRPEKPAF--RKCYERLELAAREHGWSIPSRATAFRRIQQLD 156 (529)
T ss_dssp CCCCHHHHHHHHHHHTSTTCCCH--HHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhCcCCCCH--HHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Confidence 45778888888888877766555 45799999999999998779999999988753
Done!