Your job contains 1 sequence.
>psy7155
MVQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTEVAYIVDEPAQAT
TATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAEN
KLDAVNAASFGKLIRSVFIGLRTRRLGTRRGWRFLSSSQSALTRVIALG
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7155
(169 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F6UGA0 - symbol:RFX3 "Transcription factor RFX3... 274 6.8e-24 1
FB|FBgn0020379 - symbol:Rfx "Rfx" species:7227 "Drosophil... 285 9.6e-24 1
RGD|1306574 - symbol:Rfx1 "regulatory factor X, 1 (influe... 257 8.6e-23 2
RGD|1588579 - symbol:Rfx2 "regulatory factor X, 2 (influe... 270 1.8e-22 1
MGI|MGI:105982 - symbol:Rfx1 "regulatory factor X, 1 (inf... 257 3.6e-22 2
UNIPROTKB|E2R585 - symbol:RFX1 "Uncharacterized protein" ... 257 4.6e-22 2
UNIPROTKB|E2R2T9 - symbol:RFX1 "Uncharacterized protein" ... 257 4.7e-22 2
UNIPROTKB|F1SD60 - symbol:RFX1 "Uncharacterized protein" ... 257 4.7e-22 2
UNIPROTKB|P22670 - symbol:RFX1 "MHC class II regulatory f... 257 4.8e-22 2
UNIPROTKB|P48378 - symbol:RFX2 "DNA-binding protein RFX2"... 243 2.1e-21 2
UNIPROTKB|E2R586 - symbol:RFX2 "Uncharacterized protein" ... 243 2.3e-21 2
UNIPROTKB|E1BVZ9 - symbol:RFX2 "Uncharacterized protein" ... 253 1.2e-20 1
UNIPROTKB|E1BSB3 - symbol:RFX2 "Uncharacterized protein" ... 253 1.3e-20 1
UNIPROTKB|K7EQA0 - symbol:RFX2 "DNA-binding protein RFX2"... 243 1.3e-20 1
MGI|MGI:106583 - symbol:Rfx2 "regulatory factor X, 2 (inf... 234 1.9e-20 2
UNIPROTKB|A6QLW9 - symbol:RFX2 "DNA-binding protein RFX2"... 243 1.5e-19 1
UNIPROTKB|Q0V9K5 - symbol:rfx3 "Transcription factor RFX3... 243 1.6e-19 1
UNIPROTKB|I3LDY8 - symbol:I3LDY8 "Uncharacterized protein... 232 1.9e-19 1
ZFIN|ZDB-GENE-050227-4 - symbol:rfx2 "regulatory factor X... 241 2.6e-19 1
ZFIN|ZDB-GENE-041008-101 - symbol:rfx1b "regulatory facto... 241 3.2e-19 1
UNIPROTKB|F1MW17 - symbol:RFX3 "Uncharacterized protein" ... 239 4.1e-19 1
UNIPROTKB|E2RAK6 - symbol:RFX3 "Uncharacterized protein" ... 239 4.4e-19 1
UNIPROTKB|P48380 - symbol:RFX3 "Transcription factor RFX3... 239 4.4e-19 1
MGI|MGI:106582 - symbol:Rfx3 "regulatory factor X, 3 (inf... 239 4.4e-19 1
UNIPROTKB|D4A1I7 - symbol:Rfx3 "RCG47137" species:10116 "... 239 4.4e-19 1
UNIPROTKB|J9P7V3 - symbol:RFX3 "Uncharacterized protein" ... 239 4.7e-19 1
UNIPROTKB|F1NC32 - symbol:RFX3 "Uncharacterized protein" ... 235 7.6e-19 1
UNIPROTKB|F1M313 - symbol:Rfx3 "Protein Rfx3" species:101... 233 1.2e-18 1
UNIPROTKB|Q4R3I8 - symbol:RFX3 "Transcription factor RFX3... 234 1.5e-18 1
ZFIN|ZDB-GENE-061103-253 - symbol:rfx3 "regulatory factor... 233 2.0e-18 1
ZFIN|ZDB-GENE-070424-94 - symbol:rfx1a "regulatory factor... 217 4.2e-18 2
RGD|1307779 - symbol:Rfx3 "regulatory factor X, 3 (influe... 225 4.9e-18 1
WB|WBGene00000914 - symbol:daf-19 species:6239 "Caenorhab... 222 3.3e-17 1
UNIPROTKB|B4DZB7 - symbol:RFX4 "cDNA FLJ61497, highly sim... 189 6.9e-15 1
UNIPROTKB|Q33E94 - symbol:RFX4 "Transcription factor RFX4... 189 9.9e-14 1
MGI|MGI:1918387 - symbol:Rfx4 "regulatory factor X, 4 (in... 189 9.9e-14 1
UNIPROTKB|E2RMU4 - symbol:RFX4 "Uncharacterized protein" ... 189 9.9e-14 1
UNIPROTKB|F1NZN9 - symbol:RFX4 "Uncharacterized protein" ... 189 1.0e-13 1
UNIPROTKB|E2RMU3 - symbol:RFX4 "Uncharacterized protein" ... 189 1.0e-13 1
RGD|1562092 - symbol:Rfx4 "regulatory factor X, 4 (influe... 189 1.0e-13 1
UNIPROTKB|F8W1T9 - symbol:RFX4 "Transcription factor RFX4... 172 4.4e-13 1
ZFIN|ZDB-GENE-040909-2 - symbol:rfx4 "regulatory factor X... 180 9.2e-13 1
UNIPROTKB|F8VRD4 - symbol:RFX4 "Transcription factor RFX4... 142 1.2e-09 1
MGI|MGI:2445208 - symbol:Rfx6 "regulatory factor X, 6" sp... 146 5.4e-09 1
ZFIN|ZDB-GENE-041014-299 - symbol:rfx6 "regulatory factor... 144 7.9e-09 1
UNIPROTKB|F1SPQ1 - symbol:RFX4 "Uncharacterized protein" ... 142 9.7e-09 1
UNIPROTKB|E1C4M7 - symbol:RFX6 "Uncharacterized protein" ... 140 2.3e-08 1
UNIPROTKB|E1BFK8 - symbol:LOC524074 "Uncharacterized prot... 140 2.4e-08 1
UNIPROTKB|E2RTB6 - symbol:RFX6 "Uncharacterized protein" ... 136 6.3e-08 1
UNIPROTKB|Q8HWS3 - symbol:RFX6 "DNA-binding protein RFX6"... 136 6.4e-08 1
UNIPROTKB|D2HNW6 - symbol:RFX6 "DNA-binding protein RFX6"... 136 6.4e-08 1
MGI|MGI:3588206 - symbol:Rfx8 "regulatory factor X 8" spe... 130 1.6e-07 1
RGD|1560724 - symbol:Rfx8 "RFX family member 8, lacking R... 130 1.6e-07 1
UNIPROTKB|E1BAR6 - symbol:LOC100138955 "Uncharacterized p... 126 4.1e-07 1
UNIPROTKB|Q6ZV50 - symbol:RFX8 "DNA-binding protein RFX8"... 126 4.1e-07 1
UNIPROTKB|E2RJY6 - symbol:RFX8 "Uncharacterized protein" ... 111 9.4e-05 1
>UNIPROTKB|F6UGA0 [details] [associations]
symbol:RFX3 "Transcription factor RFX3" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003150 InterPro:IPR007668
Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL365202 EMBL:AL133549 EMBL:AL354941 HGNC:HGNC:9984
EMBL:AL603631 IPI:IPI00640355 ProteinModelPortal:F6UGA0 SMR:F6UGA0
Ensembl:ENST00000457373 ArrayExpress:F6UGA0 Bgee:F6UGA0
Uniprot:F6UGA0
Length = 216
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 50/70 (71%), Positives = 62/70 (88%)
Query: 71 SPDNQA-SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAAS 129
S +N S++H T+ SPAT+QWL+DNYETAEGVSLPRS+L+NHY+RHC E+KLD VNAAS
Sbjct: 140 SMENSGHSVTHTTRASPATLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNAAS 199
Query: 130 FGKLIRSVFI 139
FGKLIRS+F+
Sbjct: 200 FGKLIRSIFM 209
>FB|FBgn0020379 [details] [associations]
symbol:Rfx "Rfx" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=NAS] [GO:0043565 "sequence-specific
DNA binding" evidence=IDA] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0048813 "dendrite
morphogenesis" evidence=TAS] InterPro:IPR003150 Pfam:PF02257
PROSITE:PS51526 EMBL:AE014297 GO:GO:0006355 GO:GO:0043565
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0048813 GO:GO:0007605
eggNOG:NOG264634 GeneTree:ENSGT00550000074532 KO:K09173
RefSeq:NP_001097738.1 UniGene:Dm.3010 ProteinModelPortal:A8JQX0
SMR:A8JQX0 STRING:A8JQX0 EnsemblMetazoa:FBtr0112895 GeneID:41266
KEGG:dme:Dmel_CG6312 UCSC:CG6312-RB CTD:41266 FlyBase:FBgn0020379
OrthoDB:EOG4SJ3VT PhylomeDB:A8JQX0 GenomeRNAi:41266 NextBio:823000
Bgee:A8JQX0 Uniprot:A8JQX0
Length = 1079
Score = 285 (105.4 bits), Expect = 9.6e-24, P = 9.6e-24
Identities = 63/113 (55%), Positives = 79/113 (69%)
Query: 40 RDSPHENTEVAYIVDE------PAQATTATSNTGDPL-------SPDN-QASLSHVTKIS 85
RDSPH TEVAYI + P TT S +G L SPD+ Q++L KI+
Sbjct: 491 RDSPHSLTEVAYIQEAQSTPQTPTSTTTTHSASGGSLGTGGGGASPDSDQSALGSSNKIA 550
Query: 86 PATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
AT++WL NYETA+GVSLPRS+L+NHY++HC+E+KL+ VNAASFGKLIRSVF
Sbjct: 551 SATIKWLSRNYETADGVSLPRSTLYNHYMQHCSEHKLEPVNAASFGKLIRSVF 603
>RGD|1306574 [details] [associations]
symbol:Rfx1 "regulatory factor X, 1 (influences HLA class II
expression)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257
Pfam:PF04589 PROSITE:PS51526 RGD:1306574 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH473972 GeneTree:ENSGT00550000074532 KO:K09173 CTD:5989
OMA:VPVQHVY OrthoDB:EOG4TB49X IPI:IPI00371646 RefSeq:NP_001099414.1
UniGene:Rn.154447 Ensembl:ENSRNOT00000008104 GeneID:288906
KEGG:rno:288906 NextBio:628933 Uniprot:D3ZQ82
Length = 964
Score = 257 (95.5 bits), Expect = 8.6e-23, Sum P(2) = 8.6e-23
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 77 SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136
S SH T+ SPATVQWL+DNYETAEGVSLPRS+L+ HY+ HC E KL+ VNAASFGKLIRS
Sbjct: 413 SYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRS 472
Query: 137 VFI 139
VF+
Sbjct: 473 VFM 475
Score = 45 (20.9 bits), Expect = 8.6e-23, Sum P(2) = 8.6e-23
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 2 VQVSNAPAQLIGNVNGT------YLIQQTVEPTEHATII-ATTASRDSPHENTEV 49
VQ +N+ ++ G GT + +QQ+V T+ +++ AT ++ P + V
Sbjct: 204 VQANNSTSKTAGTPAGTVQQLQVHSVQQSVPVTQERSVVQATPQTKAGPVQQLTV 258
Score = 34 (17.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 51 YIVDEPAQATTATSNTGDPLSPDNQASLSHV 81
YIV ++ S T SP + AS + V
Sbjct: 93 YIVVTVSEGAMRASETVSEASPSSTASQTGV 123
>RGD|1588579 [details] [associations]
symbol:Rfx2 "regulatory factor X, 2 (influences HLA class II
expression)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257
Pfam:PF04589 PROSITE:PS51526 RGD:1588579 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 EMBL:CH474092 KO:K09173 CTD:5990 EMBL:BC166527
IPI:IPI00763175 RefSeq:NP_001100347.1 UniGene:Rn.35756
ProteinModelPortal:B2GV50 SMR:B2GV50 PRIDE:B2GV50 GeneID:301121
KEGG:rno:301121 NextBio:648184 Genevestigator:B2GV50 Uniprot:B2GV50
Length = 692
Score = 270 (100.1 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 49/63 (77%), Positives = 58/63 (92%)
Query: 77 SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136
SL+H + SPAT+QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KL+ VNAASFGKLIRS
Sbjct: 158 SLAHTARSSPATLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLEPVNAASFGKLIRS 217
Query: 137 VFI 139
VF+
Sbjct: 218 VFM 220
>MGI|MGI:105982 [details] [associations]
symbol:Rfx1 "regulatory factor X, 1 (influences HLA class II
expression)" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589
PROSITE:PS51526 MGI:MGI:105982 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
EMBL:CH466525 eggNOG:NOG264634 GeneTree:ENSGT00550000074532
HOGENOM:HOG000294091 KO:K09173 CTD:5989 HOVERGEN:HBG002753
OMA:VPVQHVY OrthoDB:EOG4TB49X EMBL:X76088 EMBL:BC057018
IPI:IPI00308601 PIR:A55926 RefSeq:NP_033081.3 UniGene:Mm.7892
ProteinModelPortal:P48377 SMR:P48377 STRING:P48377
PhosphoSite:P48377 PaxDb:P48377 PRIDE:P48377
Ensembl:ENSMUST00000005600 GeneID:19724 KEGG:mmu:19724
InParanoid:Q6PGH8 ChiTaRS:RFX1 NextBio:297128 Bgee:P48377
Genevestigator:P48377 GermOnline:ENSMUSG00000031706 Uniprot:P48377
Length = 963
Score = 257 (95.5 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 77 SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136
S SH T+ SPATVQWL+DNYETAEGVSLPRS+L+ HY+ HC E KL+ VNAASFGKLIRS
Sbjct: 412 SYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRS 471
Query: 137 VFI 139
VF+
Sbjct: 472 VFM 474
Score = 39 (18.8 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 3 QVSNAPAQLIGNVNGTYLIQQTVEPTEHATII-ATTASRDSPHENTEV 49
+ + PA + + + +QQ+V T+ +++ AT ++ P + V
Sbjct: 212 KTAGTPAATVQQLQ-VHSVQQSVPVTQERSVVQATPQTKAGPVQQLTV 258
Score = 34 (17.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 51 YIVDEPAQATTATSNTGDPLSPDNQASLSHV 81
YIV ++ S T SP + AS + V
Sbjct: 93 YIVVTVSEGAMRASETVSEASPSSTASQTGV 123
>UNIPROTKB|E2R585 [details] [associations]
symbol:RFX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003150
InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GeneTree:ENSGT00550000074532 EMBL:AAEX03012381
EMBL:AAEX03012382 Ensembl:ENSCAFT00000029732 NextBio:20852345
Uniprot:E2R585
Length = 966
Score = 257 (95.5 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 77 SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136
S SH T+ SPATVQWL+DNYETAEGVSLPRS+L+ HY+ HC E KL+ VNAASFGKLIRS
Sbjct: 421 SYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRS 480
Query: 137 VFI 139
VF+
Sbjct: 481 VFM 483
Score = 38 (18.4 bits), Expect = 4.6e-22, Sum P(2) = 4.6e-22
Identities = 20/89 (22%), Positives = 33/89 (37%)
Query: 2 VQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTEVAYIVDEPAQATT 61
+Q++N P ++Q T ++ + T H E + P QA +
Sbjct: 157 LQLTNIPVPQQALPTQRLVVQSTAPGSKGGQVSLTVHGTQQVHSPPERS-----PVQANS 211
Query: 62 ATSNT-GDPLSPDNQASLSH-VTKISPAT 88
++S T G P Q H V + P T
Sbjct: 212 SSSKTAGAPTGTVPQQLQVHGVQQSVPVT 240
Score = 34 (17.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 8 PAQLIGNVNGTYLIQQTVEPTEHATIIATT 37
P QL V+G +QQ+V T+ +++ T
Sbjct: 225 PQQL--QVHG---VQQSVPVTQERSVVQAT 249
>UNIPROTKB|E2R2T9 [details] [associations]
symbol:RFX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589
PROSITE:PS51526 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GeneTree:ENSGT00550000074532
KO:K09173 CTD:5989 OMA:VPVQHVY EMBL:AAEX03012381 EMBL:AAEX03012382
RefSeq:XP_542024.2 Ensembl:ENSCAFT00000026160 GeneID:484908
KEGG:cfa:484908 NextBio:20858974 Uniprot:E2R2T9
Length = 973
Score = 257 (95.5 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 77 SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136
S SH T+ SPATVQWL+DNYETAEGVSLPRS+L+ HY+ HC E KL+ VNAASFGKLIRS
Sbjct: 421 SYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRS 480
Query: 137 VFI 139
VF+
Sbjct: 481 VFM 483
Score = 38 (18.4 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 20/89 (22%), Positives = 33/89 (37%)
Query: 2 VQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTEVAYIVDEPAQATT 61
+Q++N P ++Q T ++ + T H E + P QA +
Sbjct: 157 LQLTNIPVPQQALPTQRLVVQSTAPGSKGGQVSLTVHGTQQVHSPPERS-----PVQANS 211
Query: 62 ATSNT-GDPLSPDNQASLSH-VTKISPAT 88
++S T G P Q H V + P T
Sbjct: 212 SSSKTAGAPTGTVPQQLQVHGVQQSVPVT 240
Score = 34 (17.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 8 PAQLIGNVNGTYLIQQTVEPTEHATIIATT 37
P QL V+G +QQ+V T+ +++ T
Sbjct: 225 PQQL--QVHG---VQQSVPVTQERSVVQAT 249
>UNIPROTKB|F1SD60 [details] [associations]
symbol:RFX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003150
InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GeneTree:ENSGT00550000074532 KO:K09173 CTD:5989
OMA:VPVQHVY EMBL:FP016000 RefSeq:XP_003123399.1 UniGene:Ssc.24320
Ensembl:ENSSSCT00000015038 GeneID:100511439 KEGG:ssc:100511439
Uniprot:F1SD60
Length = 973
Score = 257 (95.5 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 77 SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136
S SH T+ SPATVQWL+DNYETAEGVSLPRS+L+ HY+ HC E KL+ VNAASFGKLIRS
Sbjct: 421 SYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRS 480
Query: 137 VFI 139
VF+
Sbjct: 481 VFM 483
Score = 38 (18.4 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 21/89 (23%), Positives = 33/89 (37%)
Query: 2 VQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTEVAYIVDEPAQATT 61
+Q++N P ++Q T + + T S H E + P QA +
Sbjct: 161 LQLTNIPVPQQALPTQRLVVQSTAPGGKGGQVSLTVHSTQQVHSPPERS-----PVQANS 215
Query: 62 ATSNT-GDPLSPDNQASLSHVTKIS-PAT 88
++S T G P Q H + S P T
Sbjct: 216 SSSKTAGAPTGTVPQQLQVHGAQQSVPVT 244
>UNIPROTKB|P22670 [details] [associations]
symbol:RFX1 "MHC class II regulatory factor RFX1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003705 "RNA polymerase II
distal enhancer sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006955 "immune response" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003150
InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526
GO:GO:0005634 GO:GO:0006955 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003705 EMBL:AC022098 eggNOG:NOG264634
HOGENOM:HOG000294091 KO:K09173 EMBL:AC020916 EMBL:X58964
EMBL:BC049826 IPI:IPI00305337 PIR:A35913 RefSeq:NP_002909.4
UniGene:Hs.655215 PDB:1DP7 PDBsum:1DP7 ProteinModelPortal:P22670
SMR:P22670 IntAct:P22670 MINT:MINT-1186898 STRING:P22670
PhosphoSite:P22670 DMDM:288558824 PaxDb:P22670 PRIDE:P22670
Ensembl:ENST00000254325 GeneID:5989 KEGG:hsa:5989 UCSC:uc002mxv.3
CTD:5989 GeneCards:GC19M014072 H-InvDB:HIX0027643 HGNC:HGNC:9982
HPA:HPA048722 MIM:600006 neXtProt:NX_P22670 PharmGKB:PA34352
HOVERGEN:HBG002753 InParanoid:P22670 OMA:VPVQHVY OrthoDB:EOG4TB49X
PhylomeDB:P22670 EvolutionaryTrace:P22670 GenomeRNAi:5989
NextBio:23325 Bgee:P22670 CleanEx:HS_RFX1 Genevestigator:P22670
GermOnline:ENSG00000132005 Uniprot:P22670
Length = 979
Score = 257 (95.5 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 77 SLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRS 136
S SH T+ SPATVQWL+DNYETAEGVSLPRS+L+ HY+ HC E KL+ VNAASFGKLIRS
Sbjct: 427 SYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRS 486
Query: 137 VFI 139
VF+
Sbjct: 487 VFM 489
Score = 38 (18.4 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 8 PAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSP 43
P QL V+G +QQ+V T+ +++ T P
Sbjct: 229 PQQL--QVHG---VQQSVPVTQERSVVQATPQAPKP 259
>UNIPROTKB|P48378 [details] [associations]
symbol:RFX2 "DNA-binding protein RFX2" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003150
InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 eggNOG:NOG264634
HOGENOM:HOG000294091 KO:K09173 HOVERGEN:HBG002753 CTD:5990
OMA:SGAYLIH EMBL:X76091 EMBL:AK024288 EMBL:AK291196 EMBL:AC011444
EMBL:BC028579 EMBL:BC071571 IPI:IPI00107801 IPI:IPI00298182
PIR:B55926 RefSeq:NP_000626.2 RefSeq:NP_602309.1 UniGene:Hs.465709
ProteinModelPortal:P48378 SMR:P48378 IntAct:P48378
MINT:MINT-3016688 STRING:P48378 PhosphoSite:P48378 DMDM:254763325
PaxDb:P48378 PRIDE:P48378 DNASU:5990 Ensembl:ENST00000303657
Ensembl:ENST00000359161 GeneID:5990 KEGG:hsa:5990 UCSC:uc002meb.3
UCSC:uc002mec.3 GeneCards:GC19M005944 H-InvDB:HIX0014689
HGNC:HGNC:9983 HPA:HPA048969 MIM:142765 neXtProt:NX_P48378
PharmGKB:PA34353 InParanoid:P48378 PhylomeDB:P48378 GenomeRNAi:5990
NextBio:23329 ArrayExpress:P48378 Bgee:P48378 CleanEx:HS_RFX2
Genevestigator:P48378 GermOnline:ENSG00000087903 Uniprot:P48378
Length = 723
Score = 243 (90.6 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 79 SHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
SH + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KLD VNAASFGKLIRSVF
Sbjct: 190 SHKSGLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVF 249
Query: 139 I 139
+
Sbjct: 250 M 250
Score = 42 (19.8 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 17 GTYLIQQTVEPTEHATIIATTASRDSP 43
G YLI ++ T H+ +A T SR SP
Sbjct: 149 GAYLIHGGMDSTRHS--LAHT-SRSSP 172
>UNIPROTKB|E2R586 [details] [associations]
symbol:RFX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003150
InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GeneTree:ENSGT00550000074532 OMA:SGAYLIH
NextBio:20852345 EMBL:AAEX03012503 Ensembl:ENSCAFT00000029731
Uniprot:E2R586
Length = 744
Score = 243 (90.6 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 79 SHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
SH + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KLD VNAASFGKLIRSVF
Sbjct: 212 SHKSGLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVF 271
Query: 139 I 139
+
Sbjct: 272 M 272
Score = 42 (19.8 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 17 GTYLIQQTVEPTEHATIIATTASRDSP 43
G YLI ++ T H+ +A T SR SP
Sbjct: 171 GAYLIHGGMDSTRHS--LAHT-SRSSP 194
>UNIPROTKB|E1BVZ9 [details] [associations]
symbol:RFX2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003150 InterPro:IPR007668
Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00550000074532 EMBL:AADN02072209 EMBL:AADN02072210
IPI:IPI00822713 Ensembl:ENSGALT00000041242 Uniprot:E1BVZ9
Length = 695
Score = 253 (94.1 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 51/95 (53%), Positives = 67/95 (70%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
ENT + + ++++ AT N+ SH + + + +QWL+DNYETAEGVSL
Sbjct: 133 ENTR--HSLSHTSRSSPATLEMAIENLQKNEGITSHKSSLLNSHLQWLLDNYETAEGVSL 190
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
PRSSL+NHY+RHC E+KLD VNAASFGKLIRSVF+
Sbjct: 191 PRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVFM 225
>UNIPROTKB|E1BSB3 [details] [associations]
symbol:RFX2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003150 InterPro:IPR007668
Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00550000074532 KO:K09173 CTD:5990 OMA:SGAYLIH
EMBL:AADN02072209 EMBL:AADN02072210 IPI:IPI00588661
RefSeq:XP_418212.3 Ensembl:ENSGALT00000002724 GeneID:420092
KEGG:gga:420092 Uniprot:E1BSB3
Length = 725
Score = 253 (94.1 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 51/95 (53%), Positives = 67/95 (70%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
ENT + + ++++ AT N+ SH + + + +QWL+DNYETAEGVSL
Sbjct: 163 ENTR--HSLSHTSRSSPATLEMAIENLQKNEGITSHKSSLLNSHLQWLLDNYETAEGVSL 220
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
PRSSL+NHY+RHC E+KLD VNAASFGKLIRSVF+
Sbjct: 221 PRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVFM 255
>UNIPROTKB|K7EQA0 [details] [associations]
symbol:RFX2 "DNA-binding protein RFX2" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AC011444 HGNC:HGNC:9983 EMBL:AC011471
EMBL:AC104538 Ensembl:ENST00000586806 Uniprot:K7EQA0
Length = 147
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 79 SHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
SH + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KLD VNAASFGKLIRSVF
Sbjct: 14 SHKSGLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVF 73
Query: 139 I 139
+
Sbjct: 74 M 74
>MGI|MGI:106583 [details] [associations]
symbol:Rfx2 "regulatory factor X, 2 (influences HLA class II
expression)" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589
PROSITE:PS51526 MGI:MGI:106583 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
eggNOG:NOG264634 GeneTree:ENSGT00550000074532 HOGENOM:HOG000294091
KO:K09173 HOVERGEN:HBG002753 CTD:5990 OMA:SGAYLIH OrthoDB:EOG4RR6H0
EMBL:X76089 EMBL:AK044439 EMBL:BC004654 IPI:IPI00406298
IPI:IPI00474946 PIR:C55926 RefSeq:NP_033082.1 RefSeq:NP_082063.1
UniGene:Mm.102 ProteinModelPortal:P48379 SMR:P48379 IntAct:P48379
STRING:P48379 PhosphoSite:P48379 PaxDb:P48379 PRIDE:P48379
Ensembl:ENSMUST00000002444 Ensembl:ENSMUST00000086801 GeneID:19725
KEGG:mmu:19725 UCSC:uc008ddf.2 UCSC:uc008ddg.2 InParanoid:Q8BXR3
NextBio:297132 Bgee:P48379 Genevestigator:P48379
GermOnline:ENSMUSG00000024206 Uniprot:P48379
Length = 717
Score = 234 (87.4 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 46/83 (55%), Positives = 60/83 (72%)
Query: 57 AQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRH 116
A+++ AT ++ H + + +QWL+DNYETAEGVSLPRSSL+NHY+RH
Sbjct: 163 ARSSPATLEMAIETLQKSEGLAPHKGGLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRH 222
Query: 117 CAENKLDAVNAASFGKLIRSVFI 139
C E+KL+ VNAASFGKLIRSVF+
Sbjct: 223 CQEHKLEPVNAASFGKLIRSVFM 245
Score = 42 (19.8 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 2 VQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSP 43
+ VS P ++ G YLI ++ T H+ +A TA R SP
Sbjct: 132 MDVSGTP--IVSGA-GAYLIHGGMDGTRHS--LAHTA-RSSP 167
>UNIPROTKB|A6QLW9 [details] [associations]
symbol:RFX2 "DNA-binding protein RFX2" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003150 InterPro:IPR007668
Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 eggNOG:NOG264634 GeneTree:ENSGT00550000074532
HOGENOM:HOG000294091 KO:K09173 EMBL:BC148113 IPI:IPI00715024
RefSeq:NP_001095642.1 UniGene:Bt.9918 ProteinModelPortal:A6QLW9
SMR:A6QLW9 Ensembl:ENSBTAT00000023492 GeneID:534475 KEGG:bta:534475
CTD:5990 OMA:SGAYLIH OrthoDB:EOG4RR6H0 NextBio:20876411
ArrayExpress:A6QLW9 Uniprot:A6QLW9
Length = 707
Score = 243 (90.6 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 79 SHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
SH + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC E+KLD VNAASFGKLIRSVF
Sbjct: 195 SHKSGLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEHKLDPVNAASFGKLIRSVF 254
Query: 139 I 139
+
Sbjct: 255 M 255
>UNIPROTKB|Q0V9K5 [details] [associations]
symbol:rfx3 "Transcription factor RFX3" species:8364
"Xenopus (Silurana) tropicalis" [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0031018 "endocrine
pancreas development" evidence=ISS] [GO:0044212 "transcription
regulatory region DNA binding" evidence=ISS] [GO:0050796
"regulation of insulin secretion" evidence=ISS] [GO:0060285
"ciliary cell motility" evidence=ISS] [GO:0060287 "epithelial
cilium movement involved in determination of left/right asymmetry"
evidence=ISS] InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257
Pfam:PF04589 PROSITE:PS51526 GO:GO:0005634 GO:GO:0030154
GO:GO:0006355 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0050796 GO:GO:0044212 GO:GO:0031018 GO:GO:0060285
GO:GO:0060287 HOVERGEN:HBG002753 EMBL:BC121500 UniGene:Str.54774
Xenbase:XB-GENE-1021689 Uniprot:Q0V9K5
Length = 749
Score = 243 (90.6 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 49/95 (51%), Positives = 65/95 (68%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
EN+ + V +A+ AT + SH + + + +QWL+DNYETAEGVSL
Sbjct: 142 ENS--GHSVSHTTRASPATIEMAIETLQKSDGLSSHRSSLLNSHLQWLLDNYETAEGVSL 199
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
PRS+L+NHY+RHC E+KLD VNAASFGKLIRS+F+
Sbjct: 200 PRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFM 234
>UNIPROTKB|I3LDY8 [details] [associations]
symbol:I3LDY8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00550000074532 EMBL:CU633517 EMBL:CU618324
Ensembl:ENSSSCT00000030480 OMA:EQLEPAC Uniprot:I3LDY8
Length = 97
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 41/50 (82%), Positives = 48/50 (96%)
Query: 90 QWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
QWL+DNYETAEGVSLPRS+L+NHY+RHC E+KLD VNAASFGKLIRS+F+
Sbjct: 1 QWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFM 50
>ZFIN|ZDB-GENE-050227-4 [details] [associations]
symbol:rfx2 "regulatory factor X, 2 (influences HLA
class II expression)" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589
PROSITE:PS51526 ZFIN:ZDB-GENE-050227-4 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00550000074532 EMBL:BX664738 EMBL:CR450804
IPI:IPI00993889 Ensembl:ENSDART00000122943 ArrayExpress:E7F9V8
Bgee:E7F9V8 Uniprot:E7F9V8
Length = 738
Score = 241 (89.9 bits), Expect = 2.6e-19, P = 2.6e-19
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 79 SHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
+H + + + +QWL+DNYETAEGVSLPRSSL+NHY+RHC E KLD VNAASFGKLIRSVF
Sbjct: 195 THKSSLLNSHLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEQKLDPVNAASFGKLIRSVF 254
Query: 139 I 139
+
Sbjct: 255 M 255
>ZFIN|ZDB-GENE-041008-101 [details] [associations]
symbol:rfx1b "regulatory factor X, 1b (influences
HLA class II expression)" species:7955 "Danio rerio" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR003150 Pfam:PF02257
PROSITE:PS51526 ZFIN:ZDB-GENE-041008-101 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00550000074532 EMBL:AL929114 IPI:IPI01024055
Ensembl:ENSDART00000148382 ArrayExpress:F8W388 Uniprot:F8W388
Length = 829
Score = 241 (89.9 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 46/68 (67%), Positives = 54/68 (79%)
Query: 72 PDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFG 131
P S S T+ SPATVQWL+DNYETAEGVSLPR +L+ HY+ HC + KL+ VNAASFG
Sbjct: 275 PGGNQSFSPNTRASPATVQWLMDNYETAEGVSLPRCTLYCHYLLHCQQTKLEPVNAASFG 334
Query: 132 KLIRSVFI 139
KLIRSVF+
Sbjct: 335 KLIRSVFM 342
>UNIPROTKB|F1MW17 [details] [associations]
symbol:RFX3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000078 "positive regulation of type B pancreatic cell
development" evidence=IEA] [GO:0072560 "type B pancreatic cell
maturation" evidence=IEA] [GO:0060287 "epithelial cilium movement
involved in determination of left/right asymmetry" evidence=IEA]
[GO:0060285 "ciliary cell motility" evidence=IEA] [GO:0050796
"regulation of insulin secretion" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0042384 "cilium assembly" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589
PROSITE:PS51526 GO:GO:0005634 GO:GO:0045892 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0050796 GO:GO:0042384 GO:GO:2000078
GO:GO:0060285 GO:GO:0060287 GeneTree:ENSGT00550000074532
GO:GO:0072560 OMA:MQTPEAG EMBL:DAAA02022730 EMBL:DAAA02022731
IPI:IPI00718282 Ensembl:ENSBTAT00000001085 Uniprot:F1MW17
Length = 713
Score = 239 (89.2 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
EN+ + V +A+ AT + +H + + + +QWL+DNYETAEGVSL
Sbjct: 104 ENS--GHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSL 161
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
PRS+L+NHY+RHC E+KLD VNAASFGKLIRS+F+
Sbjct: 162 PRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFM 196
>UNIPROTKB|E2RAK6 [details] [associations]
symbol:RFX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000078 "positive regulation of type B
pancreatic cell development" evidence=IEA] [GO:0072560 "type B
pancreatic cell maturation" evidence=IEA] [GO:0060287 "epithelial
cilium movement involved in determination of left/right asymmetry"
evidence=IEA] [GO:0060285 "ciliary cell motility" evidence=IEA]
[GO:0050796 "regulation of insulin secretion" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0042384 "cilium assembly" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257
Pfam:PF04589 PROSITE:PS51526 GO:GO:0005634 GO:GO:0045892
GO:GO:0003677 GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0050796 GO:GO:0042384
GO:GO:2000078 GO:GO:0060285 GO:GO:0060287
GeneTree:ENSGT00550000074532 KO:K09173 GO:GO:0072560 CTD:5991
EMBL:AAEX03000608 EMBL:AAEX03000609 EMBL:AAEX03000610
RefSeq:XP_533540.2 Ensembl:ENSCAFT00000003260 GeneID:476339
KEGG:cfa:476339 Uniprot:E2RAK6
Length = 749
Score = 239 (89.2 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
EN+ + V +A+ AT + +H + + + +QWL+DNYETAEGVSL
Sbjct: 142 ENS--GHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSL 199
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
PRS+L+NHY+RHC E+KLD VNAASFGKLIRS+F+
Sbjct: 200 PRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFM 234
>UNIPROTKB|P48380 [details] [associations]
symbol:RFX3 "Transcription factor RFX3" species:9606 "Homo
sapiens" [GO:0072560 "type B pancreatic cell maturation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0060285 "ciliary cell motility" evidence=ISS] [GO:0031018
"endocrine pancreas development" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IDA] [GO:0060287 "epithelial cilium movement involved in
determination of left/right asymmetry" evidence=ISS] [GO:0050796
"regulation of insulin secretion" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003705 "RNA polymerase II distal
enhancer sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IC] [GO:0048469 "cell maturation" evidence=ISS]
[GO:0042384 "cilium assembly" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:2000078 "positive regulation of type B pancreatic
cell development" evidence=ISS] InterPro:IPR003150
InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526
GO:GO:0045892 GO:GO:0045944 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0050796 GO:GO:0005667 GO:GO:0003705 GO:GO:0044212
GO:GO:0000790 EMBL:CH471071 GO:GO:0042384 GO:GO:0031018
GO:GO:2000078 GO:GO:0048469 GO:GO:0060285 GO:GO:0060287
eggNOG:NOG264634 KO:K09173 GO:GO:0072560 HOVERGEN:HBG002753
EMBL:X76092 EMBL:AK289540 EMBL:AL365202 EMBL:AL133549 EMBL:AL354941
EMBL:BC022191 EMBL:BC067778 IPI:IPI00009298 IPI:IPI00102829
IPI:IPI00646621 PIR:D55926 RefSeq:NP_002910.1 RefSeq:NP_602304.1
UniGene:Hs.136829 ProteinModelPortal:P48380 SMR:P48380
IntAct:P48380 STRING:P48380 PhosphoSite:P48380 DMDM:32172437
PRIDE:P48380 Ensembl:ENST00000302303 Ensembl:ENST00000358730
Ensembl:ENST00000382004 GeneID:5991 KEGG:hsa:5991 UCSC:uc003zhr.3
UCSC:uc003zhs.1 UCSC:uc003zht.1 CTD:5991 GeneCards:GC09M003214
HGNC:HGNC:9984 HPA:HPA035689 MIM:601337 neXtProt:NX_P48380
PharmGKB:PA34354 InParanoid:P48380 OMA:MQTPEAG OrthoDB:EOG49ZXNR
PhylomeDB:P48380 GenomeRNAi:5991 NextBio:23335 ArrayExpress:P48380
Bgee:P48380 CleanEx:HS_RFX3 Genevestigator:P48380
GermOnline:ENSG00000080298 Uniprot:P48380
Length = 749
Score = 239 (89.2 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
EN+ + V +A+ AT + +H + + + +QWL+DNYETAEGVSL
Sbjct: 142 ENS--GHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSL 199
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
PRS+L+NHY+RHC E+KLD VNAASFGKLIRS+F+
Sbjct: 200 PRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFM 234
>MGI|MGI:106582 [details] [associations]
symbol:Rfx3 "regulatory factor X, 3 (influences HLA class II
expression)" species:10090 "Mus musculus" [GO:0000790 "nuclear
chromatin" evidence=ISO;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IC] [GO:0006351
"transcription, DNA-dependent" evidence=IMP] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007368 "determination of left/right symmetry" evidence=IMP]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0031018
"endocrine pancreas development" evidence=IMP] [GO:0042384 "cilium
assembly" evidence=IMP] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISO;IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0048469 "cell
maturation" evidence=IMP] [GO:0050796 "regulation of insulin
secretion" evidence=IMP] [GO:0060285 "ciliary cell motility"
evidence=IMP] [GO:0060287 "epithelial cilium movement involved in
determination of left/right asymmetry" evidence=IMP] [GO:0072560
"type B pancreatic cell maturation" evidence=IMP] [GO:2000078
"positive regulation of type B pancreatic cell development"
evidence=IMP] InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257
Pfam:PF04589 PROSITE:PS51526 MGI:MGI:106582 GO:GO:0045892
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0050796 GO:GO:0005667 GO:GO:0044212
GO:GO:0000790 GO:GO:0042384 GO:GO:2000078 GO:GO:0060285
GO:GO:0060287 eggNOG:NOG264634 GeneTree:ENSGT00550000074532
HOGENOM:HOG000294091 KO:K09173 GO:GO:0072560 HOVERGEN:HBG002753
CTD:5991 OMA:MQTPEAG EMBL:AK030008 EMBL:AK041120 EMBL:BC017598
EMBL:X76090 IPI:IPI00121582 IPI:IPI00855166 PIR:E55926
RefSeq:NP_001159886.1 RefSeq:NP_035395.2 UniGene:Mm.313321
ProteinModelPortal:P48381 SMR:P48381 IntAct:P48381 STRING:P48381
PhosphoSite:P48381 PaxDb:P48381 PRIDE:P48381
Ensembl:ENSMUST00000165566 Ensembl:ENSMUST00000172907
Ensembl:ENSMUST00000174850 GeneID:19726 KEGG:mmu:19726
UCSC:uc008hcb.2 UCSC:uc008hcd.2 InParanoid:P48381 NextBio:297136
Bgee:P48381 Genevestigator:P48381 GermOnline:ENSMUSG00000040929
Uniprot:P48381
Length = 749
Score = 239 (89.2 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
EN+ + V +A+ AT + +H + + + +QWL+DNYETAEGVSL
Sbjct: 142 ENS--GHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSL 199
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
PRS+L+NHY+RHC E+KLD VNAASFGKLIRS+F+
Sbjct: 200 PRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFM 234
>UNIPROTKB|D4A1I7 [details] [associations]
symbol:Rfx3 "RCG47137" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003150 InterPro:IPR007668
Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526 RGD:1307779 GO:GO:0005634
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0050796
GO:GO:0042384 GO:GO:2000078 GO:GO:0060285 GO:GO:0060287
EMBL:CH473953 GO:GO:0072560 OMA:MQTPEAG OrthoDB:EOG49ZXNR
IPI:IPI00559128 UniGene:Rn.23347 Ensembl:ENSRNOT00000019515
Uniprot:D4A1I7
Length = 749
Score = 239 (89.2 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
EN+ + V +A+ AT + +H + + + +QWL+DNYETAEGVSL
Sbjct: 142 ENS--GHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSL 199
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
PRS+L+NHY+RHC E+KLD VNAASFGKLIRS+F+
Sbjct: 200 PRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFM 234
>UNIPROTKB|J9P7V3 [details] [associations]
symbol:RFX3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR003150
InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GeneTree:ENSGT00550000074532 OMA:MQTPEAG
EMBL:AAEX03000608 EMBL:AAEX03000609 EMBL:AAEX03000610
Ensembl:ENSCAFT00000045303 Uniprot:J9P7V3
Length = 770
Score = 239 (89.2 bits), Expect = 4.7e-19, P = 4.7e-19
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
EN+ + V +A+ AT + +H + + + +QWL+DNYETAEGVSL
Sbjct: 142 ENS--GHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSL 199
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
PRS+L+NHY+RHC E+KLD VNAASFGKLIRS+F+
Sbjct: 200 PRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFM 234
>UNIPROTKB|F1NC32 [details] [associations]
symbol:RFX3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0042384 "cilium assembly" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050796 "regulation of insulin secretion" evidence=IEA]
[GO:0060285 "ciliary cell motility" evidence=IEA] [GO:0060287
"epithelial cilium movement involved in determination of left/right
asymmetry" evidence=IEA] [GO:0072560 "type B pancreatic cell
maturation" evidence=IEA] [GO:2000078 "positive regulation of type
B pancreatic cell development" evidence=IEA] InterPro:IPR003150
Pfam:PF02257 PROSITE:PS51526 GO:GO:0045892 GO:GO:0003677
GO:GO:0045944 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0050796 GO:GO:2000078 GO:GO:0060285
GeneTree:ENSGT00550000074532 OMA:MQTPEAG EMBL:AADN02068463
EMBL:AADN02068464 EMBL:AADN02068465 EMBL:AADN02068466
EMBL:AADN02068467 EMBL:AADN02068468 EMBL:AADN02068469
IPI:IPI00597315 Ensembl:ENSGALT00000016548 Uniprot:F1NC32
Length = 594
Score = 235 (87.8 bits), Expect = 7.6e-19, P = 7.6e-19
Identities = 44/72 (61%), Positives = 58/72 (80%)
Query: 68 DPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNA 127
+ L + S +K++ + +QWL+DNYETAEGVSLPRS+L+NHY+RHC E+KLD VNA
Sbjct: 7 ETLQKSDGLSTHRSSKVN-SHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNA 65
Query: 128 ASFGKLIRSVFI 139
ASFGKLIRS+F+
Sbjct: 66 ASFGKLIRSIFM 77
>UNIPROTKB|F1M313 [details] [associations]
symbol:Rfx3 "Protein Rfx3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526 RGD:1307779
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
IPI:IPI00780570 Ensembl:ENSRNOT00000054768 ArrayExpress:F1M313
Uniprot:F1M313
Length = 587
Score = 233 (87.1 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 41/51 (80%), Positives = 49/51 (96%)
Query: 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
+QWL+DNYETAEGVSLPRS+L+NHY+RHC E+KLD VNAASFGKLIRS+F+
Sbjct: 1 LQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPVNAASFGKLIRSIFM 51
>UNIPROTKB|Q4R3I8 [details] [associations]
symbol:RFX3 "Transcription factor RFX3" species:9541
"Macaca fascicularis" [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0031018 "endocrine pancreas
development" evidence=ISS] [GO:0044212 "transcription regulatory
region DNA binding" evidence=ISS] [GO:0050796 "regulation of
insulin secretion" evidence=ISS] [GO:0060285 "ciliary cell
motility" evidence=ISS] [GO:0060287 "epithelial cilium movement
involved in determination of left/right asymmetry" evidence=ISS]
InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589
PROSITE:PS51526 GO:GO:0005634 GO:GO:0030154 GO:GO:0006355
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0050796
GO:GO:0044212 GO:GO:0031018 GO:GO:0060285 GO:GO:0060287
HOVERGEN:HBG002753 EMBL:AB179278 ProteinModelPortal:Q4R3I8
SMR:Q4R3I8 Uniprot:Q4R3I8
Length = 749
Score = 234 (87.4 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 47/95 (49%), Positives = 65/95 (68%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
EN+ + V +A+ AT + +H + + + +QWL+DNYETAEGVSL
Sbjct: 142 ENS--GHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSL 199
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFI 139
PRS+L++HY+RHC E+KLD VNAASFGKLIRS+F+
Sbjct: 200 PRSTLYDHYLRHCQEHKLDPVNAASFGKLIRSIFM 234
>ZFIN|ZDB-GENE-061103-253 [details] [associations]
symbol:rfx3 "regulatory factor X, 3 (influences HLA
class II expression)" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISS] [GO:0031018 "endocrine pancreas development"
evidence=ISS] [GO:0060287 "epithelial cilium movement involved in
determination of left/right asymmetry" evidence=ISS] [GO:0050796
"regulation of insulin secretion" evidence=ISS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0060285
"ciliary cell motility" evidence=ISS] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] InterPro:IPR003150
InterPro:IPR007668 Pfam:PF02257 Pfam:PF04589 PROSITE:PS51526
ZFIN:ZDB-GENE-061103-253 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GeneTree:ENSGT00550000074532
EMBL:CU468737 EMBL:CU570793 IPI:IPI00500453
Ensembl:ENSDART00000041236 Bgee:F1QI01 Uniprot:F1QI01
Length = 765
Score = 233 (87.1 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 45/85 (52%), Positives = 60/85 (70%)
Query: 55 EPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYI 114
+ +A+ AT ++ S + + + +QWL+DNYETAEGVSLPRS+L+NHY+
Sbjct: 156 QTTRASPATIEMAIETLQKSEGLSSQRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYL 215
Query: 115 RHCAENKLDAVNAASFGKLIRSVFI 139
RHC E KLD VNAASFGKLIRS+F+
Sbjct: 216 RHCQEQKLDPVNAASFGKLIRSIFM 240
>ZFIN|ZDB-GENE-070424-94 [details] [associations]
symbol:rfx1a "regulatory factor X, 1a (influences
HLA class II expression)" species:7955 "Danio rerio" [GO:0003677
"DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257
Pfam:PF04589 PROSITE:PS51526 ZFIN:ZDB-GENE-070424-94 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00550000074532 EMBL:BX546473 IPI:IPI00994546
Ensembl:ENSDART00000129205 Uniprot:E7EZ03
Length = 908
Score = 217 (81.4 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 48/84 (57%), Positives = 59/84 (70%)
Query: 56 PAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIR 115
P +A+ AT + + DN S+ K VQWL+DNYETAEGVSLPRS+L+ HY+
Sbjct: 340 PTRASPATVSINE--GEDN--SVPSADK----KVQWLLDNYETAEGVSLPRSTLYCHYLL 391
Query: 116 HCAENKLDAVNAASFGKLIRSVFI 139
HC E KL+ VNAASFGKLIRSVF+
Sbjct: 392 HCQEQKLEPVNAASFGKLIRSVFM 415
Score = 40 (19.1 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 2 VQVSNAPAQLIGNVNGTYLIQQTVEPTEHATIIATTASRDSPHENTEV 49
V S+ PA ++ T ++QQ V+ + +++ T+ T++
Sbjct: 123 VSDSSPPAAVVQTGVPTQVVQQ-VQSAQQRSVVQATSQTTKTEPGTQL 169
>RGD|1307779 [details] [associations]
symbol:Rfx3 "regulatory factor X, 3 (influences HLA class II
expression)" species:10116 "Rattus norvegicus" [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0042384 "cilium
assembly" evidence=IEA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IEA] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0050796 "regulation of insulin
secretion" evidence=IEA] [GO:0060285 "ciliary cell motility"
evidence=IEA] [GO:0060287 "epithelial cilium movement involved in
determination of left/right asymmetry" evidence=IEA] [GO:0072560
"type B pancreatic cell maturation" evidence=IEA] [GO:2000078
"positive regulation of type B pancreatic cell development"
evidence=IEA] InterPro:IPR003150 InterPro:IPR007668 Pfam:PF02257
Pfam:PF04589 PROSITE:PS51526 RGD:1307779 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
eggNOG:NOG264634 GeneTree:ENSGT00550000074532 KO:K09173 CTD:5991
UniGene:Rn.23347 EMBL:BC085953 IPI:IPI00372517
RefSeq:NP_001012172.1 SMR:Q5U2M9 STRING:Q5U2M9
Ensembl:ENSRNOT00000023762 GeneID:361746 KEGG:rno:361746
HOGENOM:HOG000139750 HOVERGEN:HBG058855 NextBio:677484
Genevestigator:Q5U2M9 Uniprot:Q5U2M9
Length = 458
Score = 225 (84.3 bits), Expect = 4.9e-18, P = 4.9e-18
Identities = 46/91 (50%), Positives = 61/91 (67%)
Query: 45 ENTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSL 104
EN+ + V +A+ AT + +H + + + +QWL+DNYETAEGVSL
Sbjct: 142 ENS--GHSVTHTTRASPATIEMAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSL 199
Query: 105 PRSSLFNHYIRHCAENKLDAVNAASFGKLIR 135
PRS+L+NHY+RHC E+KLD VNAASFGKLIR
Sbjct: 200 PRSTLYNHYLRHCQEHKLDPVNAASFGKLIR 230
>WB|WBGene00000914 [details] [associations]
symbol:daf-19 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0043053 "dauer
entry" evidence=IMP] [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=IMP] InterPro:IPR003150
Pfam:PF02257 PROSITE:PS51526 GO:GO:0005634 GO:GO:0043053
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006357
GO:GO:0006351 EMBL:AF226156 EMBL:AF233652 EMBL:Z48783 PIR:T21708
RefSeq:NP_001022139.1 RefSeq:NP_001022140.1 UniGene:Cel.19518
ProteinModelPortal:Q09555 SMR:Q09555 STRING:Q09555 PaxDb:Q09555
PRIDE:Q09555 EnsemblMetazoa:F33H1.1b GeneID:174577
KEGG:cel:CELE_F33H1.1 UCSC:F33H1.1b CTD:174577 WormBase:F33H1.1a
WormBase:F33H1.1b eggNOG:NOG264634 GeneTree:ENSGT00550000074532
HOGENOM:HOG000294091 InParanoid:Q09555 KO:K09173 OMA:VLMKPEQ
NextBio:884630 ArrayExpress:Q09555 Uniprot:Q09555
Length = 805
Score = 222 (83.2 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 54/125 (43%), Positives = 76/125 (60%)
Query: 16 NGTYLIQQTVEPTEHATIIATTAS-RDSPHENTEVAYIVDEPAQATTATSNTGDPLS-PD 73
NGTY + + +A + + + SP +N Y+V PA + + + D ++ P+
Sbjct: 199 NGTYTLY--APDSNYAPYYQYSNNMQSSPQDNAP--YLV--PAPQSPVSIDDADSINLPN 252
Query: 74 NQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKL 133
NQ + SPATV WL +NYE EG SLPR L++HY +HCAE+++D VNAASFGKL
Sbjct: 253 NQ-------RASPATVNWLFENYEIGEG-SLPRCELYDHYKKHCAEHRMDPVNAASFGKL 304
Query: 134 IRSVF 138
IRSVF
Sbjct: 305 IRSVF 309
>UNIPROTKB|B4DZB7 [details] [associations]
symbol:RFX4 "cDNA FLJ61497, highly similar to Homo sapiens
regulatory factor X 4, transcript variant 2, mRNA" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC009721
EMBL:AC079385 UniGene:Hs.388827 HGNC:HGNC:9985 HOGENOM:HOG000013104
EMBL:AK302837 IPI:IPI00910894 SMR:B4DZB7 STRING:B4DZB7
Ensembl:ENST00000536722 Uniprot:B4DZB7
Length = 247
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 64 SNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLD 123
SN + +N+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C +N
Sbjct: 49 SNDENEEKENNRASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQ 105
Query: 124 AVNAASFGKLIRSVF 138
VNAASFGK+IR F
Sbjct: 106 PVNAASFGKIIRQQF 120
>UNIPROTKB|Q33E94 [details] [associations]
symbol:RFX4 "Transcription factor RFX4" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0021516 "dorsal spinal cord development"
evidence=IEA] [GO:0021696 "cerebellar cortex morphogenesis"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030901 "midbrain development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526 GO:GO:0005634
GO:GO:0003677 GO:GO:0045944 GO:GO:0030900 EMBL:CH471054
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0003682
GO:GO:0030901 GO:GO:0021696 GO:GO:0021516 EMBL:AY102009
EMBL:AB095365 EMBL:AB095366 EMBL:AB195784 EMBL:AB195785
EMBL:AF332192 EMBL:AK074913 EMBL:AK291445 EMBL:AK315698
EMBL:AC009721 EMBL:AC079385 EMBL:BC028582 EMBL:BC030644
EMBL:AB044245 EMBL:AL833921 IPI:IPI00165990 IPI:IPI00419901
IPI:IPI00719141 IPI:IPI00878891 RefSeq:NP_001193620.1
RefSeq:NP_115880.2 RefSeq:NP_998759.1 UniGene:Hs.388827
ProteinModelPortal:Q33E94 SMR:Q33E94 STRING:Q33E94
PhosphoSite:Q33E94 DMDM:121946871 PRIDE:Q33E94 DNASU:5992
Ensembl:ENST00000229387 Ensembl:ENST00000357881
Ensembl:ENST00000392842 GeneID:5992 KEGG:hsa:5992 UCSC:uc001tlr.3
UCSC:uc001tls.3 UCSC:uc001tlt.3 CTD:5992 GeneCards:GC12P106976
H-InvDB:HIX0037058 HGNC:HGNC:9985 MIM:603958 neXtProt:NX_Q33E94
PharmGKB:PA34355 eggNOG:NOG243313 HOVERGEN:HBG101271 KO:K09174
OMA:GAMQSYT OrthoDB:EOG4J3WGF PhylomeDB:Q33E94 GenomeRNAi:5992
NextBio:23341 ArrayExpress:Q33E94 Bgee:Q33E94 Genevestigator:Q33E94
Uniprot:Q33E94
Length = 735
Score = 189 (71.6 bits), Expect = 9.9e-14, P = 9.9e-14
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 64 SNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLD 123
SN + +N+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C +N
Sbjct: 40 SNDENEEKENNRASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQ 96
Query: 124 AVNAASFGKLIRSVF 138
VNAASFGK+IR F
Sbjct: 97 PVNAASFGKIIRQQF 111
>MGI|MGI:1918387 [details] [associations]
symbol:Rfx4 "regulatory factor X, 4 (influences HLA class II
expression)" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0021516 "dorsal spinal cord development" evidence=IMP]
[GO:0021696 "cerebellar cortex morphogenesis" evidence=IMP]
[GO:0030900 "forebrain development" evidence=IMP] [GO:0030901
"midbrain development" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526
MGI:MGI:1918387 GO:GO:0005634 GO:GO:0003677 GO:GO:0045944
GO:GO:0030900 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0003682 GO:GO:0030901 GeneTree:ENSGT00550000074532
GO:GO:0021696 GO:GO:0021516 CTD:5992 eggNOG:NOG243313
HOVERGEN:HBG101271 KO:K09174 OMA:GAMQSYT OrthoDB:EOG4J3WGF
EMBL:AY342003 EMBL:AY102010 EMBL:AB086957 EMBL:AB089184
EMBL:AK016791 EMBL:AK034131 EMBL:AK132673 EMBL:BC138719
EMBL:BC138720 IPI:IPI00380326 IPI:IPI00399974 IPI:IPI00608125
IPI:IPI00882202 RefSeq:NP_001020089.1 RefSeq:NP_081965.2
UniGene:Mm.79070 HSSP:P22670 ProteinModelPortal:Q7TNK1 SMR:Q7TNK1
STRING:Q7TNK1 PRIDE:Q7TNK1 Ensembl:ENSMUST00000060397
Ensembl:ENSMUST00000095388 Ensembl:ENSMUST00000166696 GeneID:71137
KEGG:mmu:71137 UCSC:uc007gkv.1 UCSC:uc007gkw.1 HOGENOM:HOG000013104
InParanoid:Q7TNK1 NextBio:333097 Bgee:Q7TNK1 Genevestigator:Q7TNK1
Uniprot:Q7TNK1
Length = 735
Score = 189 (71.6 bits), Expect = 9.9e-14, P = 9.9e-14
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 64 SNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLD 123
SN + +N+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C +N
Sbjct: 40 SNDENEEKENNRASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQ 96
Query: 124 AVNAASFGKLIRSVF 138
VNAASFGK+IR F
Sbjct: 97 PVNAASFGKIIRQQF 111
>UNIPROTKB|E2RMU4 [details] [associations]
symbol:RFX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00550000074532 EMBL:AAEX03007375
Ensembl:ENSCAFT00000002852 NextBio:20850525 Uniprot:E2RMU4
Length = 736
Score = 189 (71.6 bits), Expect = 9.9e-14, P = 9.9e-14
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 64 SNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLD 123
SN + +N+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C +N
Sbjct: 41 SNDENEEKENNRASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQ 97
Query: 124 AVNAASFGKLIRSVF 138
VNAASFGK+IR F
Sbjct: 98 PVNAASFGKIIRQQF 112
>UNIPROTKB|F1NZN9 [details] [associations]
symbol:RFX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0021516
"dorsal spinal cord development" evidence=IEA] [GO:0021696
"cerebellar cortex morphogenesis" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030901 "midbrain
development" evidence=IEA] InterPro:IPR003150 Pfam:PF02257
PROSITE:PS51526 GO:GO:0005634 GO:GO:0003677 GO:GO:0045944
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
GeneTree:ENSGT00550000074532 OMA:GAMQSYT EMBL:AADN02006291
IPI:IPI00578798 Ensembl:ENSGALT00000020640 Uniprot:F1NZN9
Length = 742
Score = 189 (71.6 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 64 SNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLD 123
SN + +N+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C +N
Sbjct: 47 SNDENEEKENNRASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQ 103
Query: 124 AVNAASFGKLIRSVF 138
VNAASFGK+IR F
Sbjct: 104 PVNAASFGKIIRQQF 118
>UNIPROTKB|E2RMU3 [details] [associations]
symbol:RFX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030901
"midbrain development" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0021696 "cerebellar cortex
morphogenesis" evidence=IEA] [GO:0021516 "dorsal spinal cord
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003150 Pfam:PF02257
PROSITE:PS51526 GO:GO:0005634 GO:GO:0003677 GO:GO:0045944
GO:GO:0030900 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682
GO:GO:0030901 GeneTree:ENSGT00550000074532 GO:GO:0021696
GO:GO:0021516 CTD:5992 KO:K09174 OMA:GAMQSYT EMBL:AAEX03007375
RefSeq:XP_003431559.1 Ensembl:ENSCAFT00000002855 GeneID:474529
KEGG:cfa:474529 Uniprot:E2RMU3
Length = 744
Score = 189 (71.6 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 64 SNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLD 123
SN + +N+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C +N
Sbjct: 49 SNDENEEKENNRASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQ 105
Query: 124 AVNAASFGKLIRSVF 138
VNAASFGK+IR F
Sbjct: 106 PVNAASFGKIIRQQF 120
>RGD|1562092 [details] [associations]
symbol:Rfx4 "regulatory factor X, 4 (influences HLA class II
expression)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0021516 "dorsal spinal cord
development" evidence=ISO] [GO:0021696 "cerebellar cortex
morphogenesis" evidence=ISO] [GO:0030900 "forebrain development"
evidence=ISO] [GO:0030901 "midbrain development" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR003150
Pfam:PF02257 PROSITE:PS51526 RGD:1562092 GO:GO:0005634
GO:GO:0003677 GO:GO:0045944 GO:GO:0030900 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003682 GO:GO:0030901
GeneTree:ENSGT00550000074532 GO:GO:0021696 GO:GO:0021516
OrthoDB:EOG4J3WGF IPI:IPI00957432 Ensembl:ENSRNOT00000059685
UCSC:RGD:1562092 Uniprot:D3ZXR0
Length = 745
Score = 189 (71.6 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 39/75 (52%), Positives = 50/75 (66%)
Query: 64 SNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLD 123
SN + +N+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C +N
Sbjct: 50 SNDENEEKENNRASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQ 106
Query: 124 AVNAASFGKLIRSVF 138
VNAASFGK+IR F
Sbjct: 107 PVNAASFGKIIRQQF 121
>UNIPROTKB|F8W1T9 [details] [associations]
symbol:RFX4 "Transcription factor RFX4" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC009721
EMBL:AC079385 HGNC:HGNC:9985 IPI:IPI01022400
ProteinModelPortal:F8W1T9 SMR:F8W1T9 Ensembl:ENST00000546882
ArrayExpress:F8W1T9 Bgee:F8W1T9 Uniprot:F8W1T9
Length = 77
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 35/65 (53%), Positives = 44/65 (67%)
Query: 68 DPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNA 127
D +N+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C +N VNA
Sbjct: 15 DEEKENNRASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNA 71
Query: 128 ASFGK 132
ASFGK
Sbjct: 72 ASFGK 76
>ZFIN|ZDB-GENE-040909-2 [details] [associations]
symbol:rfx4 "regulatory factor X, 4" species:7955
"Danio rerio" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR003150
Pfam:PF02257 PROSITE:PS51526 ZFIN:ZDB-GENE-040909-2 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
HOVERGEN:HBG101271 EMBL:BC162501 IPI:IPI00512878 UniGene:Dr.78441
Uniprot:B3DGS4
Length = 735
Score = 180 (68.4 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 64 SNTGDPLSPDNQASLSHVTKISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLD 123
SN + +N+AS H T PAT+QWL +NYE AEGV +PRS+L+ HY+ C KLD
Sbjct: 40 SNDENEEKENNRASKPHST---PATLQWLEENYEIAEGVCIPRSALYMHYLDFC--EKLD 94
Query: 124 A--VNAASFGKLIRSVF 138
+ VNAASFGK+IR F
Sbjct: 95 SQPVNAASFGKIIRQQF 111
>UNIPROTKB|F8VRD4 [details] [associations]
symbol:RFX4 "Transcription factor RFX4" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC009721
EMBL:AC079385 HGNC:HGNC:9985 IPI:IPI01020778
ProteinModelPortal:F8VRD4 SMR:F8VRD4 Ensembl:ENST00000551640
ArrayExpress:F8VRD4 Bgee:F8VRD4 Uniprot:F8VRD4
Length = 256
Score = 142 (55.0 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 92 LIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
L +NYE AEGV +PRS+L+ HY+ C +N VNAASFGK+IR F
Sbjct: 10 LEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQF 56
>MGI|MGI:2445208 [details] [associations]
symbol:Rfx6 "regulatory factor X, 6" species:10090 "Mus
musculus" [GO:0003309 "type B pancreatic cell differentiation"
evidence=IMP] [GO:0003310 "pancreatic A cell differentiation"
evidence=IMP] [GO:0003311 "pancreatic D cell differentiation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0031018 "endocrine pancreas development" evidence=ISO]
[GO:0042593 "glucose homeostasis" evidence=ISO;IMP] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0050796 "regulation of insulin secretion"
evidence=ISO;IMP] [GO:0090104 "pancreatic epsilon cell
differentiation" evidence=IMP] InterPro:IPR003150 Pfam:PF02257
PROSITE:PS51526 MGI:MGI:2445208 GO:GO:0005634 GO:GO:0045893
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0042593
GO:GO:0050796 GO:GO:0044212 GeneTree:ENSGT00550000074532
GO:GO:0003310 GO:GO:0003309 eggNOG:NOG243313 HSSP:P22670 CTD:222546
HOGENOM:HOG000154105 OMA:TQLTLQW GO:GO:0003311 GO:GO:0090104
HOVERGEN:HBG108402 OrthoDB:EOG4WDDB7 EMBL:AK029809 EMBL:AK049380
EMBL:AC153527 EMBL:BC132104 EMBL:BC132294 IPI:IPI00275499
IPI:IPI00857281 IPI:IPI00882131 RefSeq:NP_001152861.1
RefSeq:NP_796280.1 UniGene:Mm.109190 ProteinModelPortal:Q8C7R7
SMR:Q8C7R7 STRING:Q8C7R7 PhosphoSite:Q8C7R7 PRIDE:Q8C7R7
Ensembl:ENSMUST00000050455 Ensembl:ENSMUST00000122922 GeneID:320995
KEGG:mmu:320995 UCSC:uc007fax.2 UCSC:uc007fay.1 UCSC:uc011xdr.1
InParanoid:Q8C7R7 NextBio:397819 Bgee:Q8C7R7 Genevestigator:Q8C7R7
Uniprot:Q8C7R7
Length = 927
Score = 146 (56.5 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 34/88 (38%), Positives = 46/88 (52%)
Query: 54 DEPAQATTATSNTGDP-LSPDNQAS--LSHVTKISPATVQWLIDNYETAEGVSLPRSSLF 110
+E A + + DP LS + + K + T+QWL DNY EGV LPR L+
Sbjct: 86 EEDADTQESKTKAADPQLSQKKSITQMMKDKKKQTQLTLQWLEDNYIVCEGVCLPRCILY 145
Query: 111 NHYIRHCAENKLDAVNAASFGKLIRSVF 138
HY+ C + KL+ AA+FGK IR F
Sbjct: 146 AHYLDFCRKEKLEPACAATFGKTIRQKF 173
>ZFIN|ZDB-GENE-041014-299 [details] [associations]
symbol:rfx6 "regulatory factor X, 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0031018 "endocrine pancreas development" evidence=IMP]
[GO:0003310 "pancreatic A cell differentiation" evidence=ISS]
[GO:0003309 "type B pancreatic cell differentiation" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0090104 "pancreatic epsilon cell differentiation" evidence=ISS]
[GO:0050796 "regulation of insulin secretion" evidence=ISS]
[GO:0003311 "pancreatic D cell differentiation" evidence=ISS]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=ISS] [GO:0042593 "glucose homeostasis" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR003150
Pfam:PF02257 PROSITE:PS51526 ZFIN:ZDB-GENE-041014-299 GO:GO:0005634
GO:GO:0045893 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0042593 GO:GO:0050796 GO:GO:0044212
GeneTree:ENSGT00550000074532 GO:GO:0003310 GO:GO:0003309
eggNOG:NOG243313 CTD:222546 HOGENOM:HOG000154105 GO:GO:0003311
GO:GO:0090104 EMBL:BX000362 IPI:IPI00511539 RefSeq:XP_684953.3
STRING:Q5RJA1 Ensembl:ENSDART00000061122 GeneID:556925
KEGG:dre:556925 HOVERGEN:HBG108402 InParanoid:Q5RJA1
OrthoDB:EOG4WDDB7 NextBio:20881734 Bgee:Q5RJA1 Uniprot:Q5RJA1
Length = 848
Score = 144 (55.7 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 29/56 (51%), Positives = 35/56 (62%)
Query: 83 KISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
K + T+QWL DNY EGV LPR L+ HY+ C + KLD AA+FGK IR F
Sbjct: 51 KQTQLTLQWLEDNYIVCEGVCLPRCILYAHYLDFCRKEKLDPACAATFGKTIRQKF 106
>UNIPROTKB|F1SPQ1 [details] [associations]
symbol:RFX4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030901 "midbrain
development" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0021696 "cerebellar cortex morphogenesis"
evidence=IEA] [GO:0021516 "dorsal spinal cord development"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526
GO:GO:0005634 GO:GO:0003677 GO:GO:0045944 GO:GO:0030900
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003682 GO:GO:0030901
GeneTree:ENSGT00550000074532 GO:GO:0021696 GO:GO:0021516
OMA:GAMQSYT EMBL:CU407137 Ensembl:ENSSSCT00000000177 Uniprot:F1SPQ1
Length = 680
Score = 142 (55.0 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 92 LIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
L +NYE AEGV +PRS+L+ HY+ C +N VNAASFGK+IR F
Sbjct: 1 LEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQF 47
>UNIPROTKB|E1C4M7 [details] [associations]
symbol:RFX6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003309 "type B pancreatic cell differentiation"
evidence=IEA] [GO:0003310 "pancreatic A cell differentiation"
evidence=IEA] [GO:0003311 "pancreatic D cell differentiation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0042593
"glucose homeostasis" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0050796 "regulation of insulin secretion" evidence=IEA]
[GO:0090104 "pancreatic epsilon cell differentiation" evidence=IEA]
InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526 GO:GO:0005634
GO:GO:0045893 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0042593
GO:GO:0050796 GO:GO:0044212 GeneTree:ENSGT00550000074532
OMA:TQLTLQW EMBL:AADN02001990 EMBL:AADN02001989 IPI:IPI00593297
Ensembl:ENSGALT00000024061 Uniprot:E1C4M7
Length = 916
Score = 140 (54.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 35/97 (36%), Positives = 48/97 (49%)
Query: 46 NTEVAYIVDEPAQATTATSNTGDPLSPDNQASLSHVTKI----SPATVQWLIDNYETAEG 101
N E +E A D SP + S++ + K + T+QWL +NY EG
Sbjct: 66 NGETLSSEEEDADTQDGKLRAADK-SPSPKKSITQMMKDKKKQTQLTLQWLEENYIVCEG 124
Query: 102 VSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
V LPR L+ HY+ C + KL+ AA+FGK IR F
Sbjct: 125 VCLPRCILYAHYLDFCRKEKLEPACAATFGKTIRQKF 161
>UNIPROTKB|E1BFK8 [details] [associations]
symbol:LOC524074 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0090104 "pancreatic epsilon cell differentiation"
evidence=IEA] [GO:0050796 "regulation of insulin secretion"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0044212 "transcription regulatory
region DNA binding" evidence=IEA] [GO:0042593 "glucose homeostasis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003311
"pancreatic D cell differentiation" evidence=IEA] [GO:0003310
"pancreatic A cell differentiation" evidence=IEA] [GO:0003309 "type
B pancreatic cell differentiation" evidence=IEA] InterPro:IPR003150
Pfam:PF02257 PROSITE:PS51526 GO:GO:0005634 GO:GO:0045893
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0042593 GO:GO:0050796
GO:GO:0044212 GeneTree:ENSGT00550000074532 GO:GO:0003310
GO:GO:0003309 OMA:TQLTLQW GO:GO:0003311 GO:GO:0090104
EMBL:DAAA02025783 IPI:IPI00685866 RefSeq:XP_003586511.1
Ensembl:ENSBTAT00000000329 GeneID:524074 KEGG:bta:524074
Uniprot:E1BFK8
Length = 927
Score = 140 (54.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 36/88 (40%), Positives = 46/88 (52%)
Query: 54 DEPAQATTATSNTGDP-LSPDNQAS--LSHVTKISPATVQWLIDNYETAEGVSLPRSSLF 110
D P T AT DP LS + + K + T+QWL +NY EGV LPR L+
Sbjct: 90 DNPDSKTKAT----DPHLSQKKTITQIMKDKKKQTQLTLQWLEENYIVCEGVCLPRCILY 145
Query: 111 NHYIRHCAENKLDAVNAASFGKLIRSVF 138
HY+ C + KL+ AA+FGK IR F
Sbjct: 146 AHYLDFCRKEKLEPACAATFGKTIRQKF 173
>UNIPROTKB|E2RTB6 [details] [associations]
symbol:RFX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00550000074532 CTD:222546 OMA:TQLTLQW
EMBL:AAEX03000387 RefSeq:XP_541213.2 Ensembl:ENSCAFT00000001421
GeneID:484096 KEGG:cfa:484096 Uniprot:E2RTB6
Length = 922
Score = 136 (52.9 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 83 KISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
K + T+QWL +NY EGV LPR L+ HY+ C + KL+ AA+FGK IR F
Sbjct: 113 KQTQLTLQWLEENYIVCEGVCLPRCILYAHYLDFCRKEKLEPACAATFGKTIRQKF 168
>UNIPROTKB|Q8HWS3 [details] [associations]
symbol:RFX6 "DNA-binding protein RFX6" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0044212 "transcription regulatory region DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031018 "endocrine pancreas development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0003310 "pancreatic A cell differentiation"
evidence=ISS] [GO:0090104 "pancreatic epsilon cell differentiation"
evidence=ISS] [GO:0050796 "regulation of insulin secretion"
evidence=IMP] [GO:0042593 "glucose homeostasis" evidence=IMP]
[GO:0003309 "type B pancreatic cell differentiation" evidence=ISS]
[GO:0003311 "pancreatic D cell differentiation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR003150 Pfam:PF02257
PROSITE:PS51526 GO:GO:0005634 GO:GO:0045893 EMBL:CH471051
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0042593
GO:GO:0050796 GO:GO:0044212 GO:GO:0003310 GO:GO:0003309
eggNOG:NOG243313 HSSP:P22670 CTD:222546 HOGENOM:HOG000154105
OMA:TQLTLQW GO:GO:0003311 GO:GO:0090104 HOVERGEN:HBG108402
OrthoDB:EOG4WDDB7 EMBL:AL355272 EMBL:BC039248 IPI:IPI00219885
RefSeq:NP_775831.2 UniGene:Hs.352276 ProteinModelPortal:Q8HWS3
SMR:Q8HWS3 IntAct:Q8HWS3 STRING:Q8HWS3 PhosphoSite:Q8HWS3
DMDM:166225159 PRIDE:Q8HWS3 Ensembl:ENST00000332958 GeneID:222546
KEGG:hsa:222546 UCSC:uc003pxm.3 GeneCards:GC06P117199
H-InvDB:HIX0025215 HGNC:HGNC:21478 HPA:HPA037697 MIM:601346
MIM:612659 neXtProt:NX_Q8HWS3 Orphanet:293864 PharmGKB:PA162401254
PhylomeDB:Q8HWS3 GenomeRNAi:222546 NextBio:91623 Bgee:Q8HWS3
CleanEx:HS_RFX6 Genevestigator:Q8HWS3 Uniprot:Q8HWS3
Length = 928
Score = 136 (52.9 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 83 KISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
K + T+QWL +NY EGV LPR L+ HY+ C + KL+ AA+FGK IR F
Sbjct: 119 KQTQLTLQWLEENYIVCEGVCLPRCILYAHYLDFCRKEKLEPACAATFGKTIRQKF 174
>UNIPROTKB|D2HNW6 [details] [associations]
symbol:RFX6 "DNA-binding protein RFX6" species:9646
"Ailuropoda melanoleuca" [GO:0003309 "type B pancreatic cell
differentiation" evidence=ISS] [GO:0003310 "pancreatic A cell
differentiation" evidence=ISS] [GO:0003311 "pancreatic D cell
differentiation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0031018 "endocrine pancreas development" evidence=ISS]
[GO:0042593 "glucose homeostasis" evidence=ISS] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0050796 "regulation of insulin secretion"
evidence=ISS] [GO:0090104 "pancreatic epsilon cell differentiation"
evidence=ISS] InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526
GO:GO:0005634 GO:GO:0045893 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0042593 GO:GO:0050796 GO:GO:0044212
GeneTree:ENSGT00550000074532 GO:GO:0003310 GO:GO:0003309
EMBL:GL193101 RefSeq:XP_002924145.1 Ensembl:ENSAMET00000006412
GeneID:100476328 KEGG:aml:100476328 CTD:222546 HOGENOM:HOG000154105
OMA:TQLTLQW GO:GO:0003311 GO:GO:0090104 Uniprot:D2HNW6
Length = 928
Score = 136 (52.9 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 83 KISPATVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
K + T+QWL +NY EGV LPR L+ HY+ C + KL+ AA+FGK IR F
Sbjct: 119 KQTQLTLQWLEENYIVCEGVCLPRCILYAHYLDFCRKEKLEPACAATFGKTIRQKF 174
>MGI|MGI:3588206 [details] [associations]
symbol:Rfx8 "regulatory factor X 8" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003150
Pfam:PF02257 PROSITE:PS51526 MGI:MGI:3588206 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GeneTree:ENSGT00550000074532 CTD:731220
HOGENOM:HOG000155476 OMA:DNFCICE OrthoDB:EOG42V8HP EMBL:AC119809
EMBL:AC122922 IPI:IPI00344121 RefSeq:NP_001139132.1
UniGene:Mm.334107 ProteinModelPortal:D3YU81 SMR:D3YU81
PhosphoSite:D3YU81 PRIDE:D3YU81 Ensembl:ENSMUST00000151913
GeneID:619289 KEGG:mmu:619289 UCSC:uc007atn.2 NextBio:414575
Bgee:D3YU81 Uniprot:D3YU81
Length = 596
Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
+QWL+DN+ EG S+PR ++ Y+ C ++ + VN A+FGKL+R VF
Sbjct: 20 IQWLVDNFCICEGFSVPRCLMYEIYVETCGQSAQNQVNPATFGKLVRLVF 69
>RGD|1560724 [details] [associations]
symbol:Rfx8 "RFX family member 8, lacking RFX DNA binding
domain" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003150 Pfam:PF02257
PROSITE:PS51526 RGD:1560724 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GeneTree:ENSGT00550000074532
OrthoDB:EOG42V8HP IPI:IPI00557907 Ensembl:ENSRNOT00000047654
UCSC:RGD:1560724 Uniprot:D3ZCQ8
Length = 596
Score = 130 (50.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
+QWL+DN+ EG S+PR ++ Y+ C ++ + VN A+FGKL+R VF
Sbjct: 20 IQWLVDNFCICEGFSVPRCLMYEIYVETCGQSAQNQVNPATFGKLVRLVF 69
>UNIPROTKB|E1BAR6 [details] [associations]
symbol:LOC100138955 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00550000074532 OMA:DNFCICE EMBL:DAAA02030207
EMBL:DAAA02030208 IPI:IPI00838530 Ensembl:ENSBTAT00000048225
Uniprot:E1BAR6
Length = 586
Score = 126 (49.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
+QWL+DN+ EG S+PR ++ Y+ C +N + VN A FGKL+ VF
Sbjct: 23 IQWLVDNFCICEGYSVPRCLMYEIYMETCGQNAQNQVNPAMFGKLVHLVF 72
>UNIPROTKB|Q6ZV50 [details] [associations]
symbol:RFX8 "DNA-binding protein RFX8" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003150 Pfam:PF02257
PROSITE:PS51526 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:AK124976
EMBL:AK298610 EMBL:AC092570 IPI:IPI00442271 IPI:IPI00807444
IPI:IPI00969022 RefSeq:NP_001139136.1 UniGene:Hs.662488
ProteinModelPortal:Q6ZV50 SMR:Q6ZV50 PhosphoSite:Q6ZV50
DMDM:172046177 PRIDE:Q6ZV50 Ensembl:ENST00000376826
Ensembl:ENST00000428343 GeneID:731220 KEGG:hsa:731220
UCSC:uc002tbb.1 CTD:731220 GeneCards:GC02M102013 HGNC:HGNC:37253
neXtProt:NX_Q6ZV50 PharmGKB:PA165697419 eggNOG:NOG235455
HOGENOM:HOG000155476 HOVERGEN:HBG108690 InParanoid:Q6ZV50
OMA:DNFCICE OrthoDB:EOG42V8HP GenomeRNAi:731220 NextBio:133988
ArrayExpress:Q6ZV50 Bgee:Q6ZV50 Genevestigator:Q6ZV50
Uniprot:Q6ZV50
Length = 586
Score = 126 (49.4 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 89 VQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
+QWL+DN+ E S+PR ++ Y+ C +N + VN A+FGKL+R VF
Sbjct: 23 IQWLVDNFCICEECSVPRCLMYEIYVETCGQNTENQVNPATFGKLVRLVF 72
>UNIPROTKB|E2RJY6 [details] [associations]
symbol:RFX8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003150 Pfam:PF02257 PROSITE:PS51526
GO:GO:0006355 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GeneTree:ENSGT00550000074532 OMA:DNFCICE EMBL:AAEX03007431
Ensembl:ENSCAFT00000003441 Uniprot:E2RJY6
Length = 560
Score = 111 (44.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 92 LIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVF 138
L+DN+ EG S+PR ++ Y+ C +N + VN A+FGKL+ VF
Sbjct: 1 LVDNFCICEGYSVPRCLMYEIYVETCGQNAQNQVNPATFGKLVHLVF 47
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.125 0.355 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 169 157 0.00079 106 3 11 23 0.39 32
30 0.42 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 56
No. of states in DFA: 575 (61 KB)
Total size of DFA: 136 KB (2085 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 16.07u 0.07s 16.14t Elapsed: 00:00:02
Total cpu time: 16.08u 0.07s 16.15t Elapsed: 00:00:05
Start: Thu Aug 15 15:05:45 2013 End: Thu Aug 15 15:05:50 2013