RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7155
         (169 letters)



>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 96.8 bits (241), Expect = 1e-27
 Identities = 51/62 (82%), Positives = 57/62 (91%)

Query: 88  TVQWLIDNYETAEGVSLPRSSLFNHYIRHCAENKLDAVNAASFGKLIRSVFIGLRTRRLG 147
           TVQWL+DNYETAEGVSLPRS+L+NHY+ H  E KL+ VNAASFGKLIRSVF+GLRTRRLG
Sbjct: 1   TVQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQKLEPVNAASFGKLIRSVFMGLRTRRLG 60

Query: 148 TR 149
           TR
Sbjct: 61  TR 62


>g1or0.1 d.153.1.2 (A:,B:) Cephalosporin acylase {Pseudomonas sp.,
           glutarylamidase [TaxId: 306]}
          Length = 674

 Score = 24.9 bits (53), Expect = 6.1
 Identities = 4/34 (11%), Positives = 11/34 (32%), Gaps = 6/34 (17%)

Query: 51  YIVD----EPAQATTATSNTGDPLSP--DNQASL 78
            +++      A    +  N+  P +    +Q   
Sbjct: 612 AMIEFSTPVRAYGLMSYGNSRQPGTTHYSDQIER 645


>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus
          [TaxId: 1270]}
          Length = 498

 Score = 24.9 bits (54), Expect = 6.3
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)

Query: 58 QATTATSNTGDPLSPDNQASLS 79
           AT +T   G P    ++ SL+
Sbjct: 4  HATGSTRQNGAPA-VSDRQSLT 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.127    0.361 

Gapped
Lambda     K      H
   0.267   0.0456    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 541,465
Number of extensions: 21308
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 3
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.7 bits)