Query psy7157
Match_columns 167
No_of_seqs 136 out of 203
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:38:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4t_A Hypothetical protein LO 100.0 2E-41 6.7E-46 249.7 10.3 79 57-135 9-87 (92)
2 4gps_A KLLA0E02245P; decapping 81.3 1.3 4.4E-05 39.9 4.1 72 3-96 322-395 (423)
3 1j1d_C Troponin I, TNI; THIN f 70.8 2.2 7.7E-05 32.7 2.3 70 39-112 26-105 (133)
4 1j1e_C Troponin I, TNI; THIN f 60.1 3.6 0.00012 33.2 1.7 71 39-113 26-106 (180)
5 1use_A VAsp, vasodilator-stimu 59.4 16 0.00056 23.3 4.4 36 71-111 6-41 (45)
6 3gz2_P Invasin IPAB, 62 kDa an 42.3 8.2 0.00028 26.6 1.0 28 95-128 26-53 (78)
7 2jee_A YIIU; FTSZ, septum, coi 37.8 23 0.00079 25.0 2.8 24 105-128 53-76 (81)
8 1ytz_T Troponin T; muscle, THI 32.4 14 0.00047 27.2 0.9 44 67-112 38-89 (107)
9 1ytz_I Troponin I; muscle, THI 31.3 11 0.00038 30.3 0.2 70 39-113 24-103 (182)
10 3fqg_A Protein DIN1; hydrolase 27.4 42 0.0014 29.1 3.2 63 3-92 268-330 (360)
11 2vqe_L 30S ribosomal protein S 27.0 18 0.00062 27.9 0.8 12 155-166 87-98 (135)
12 3fqi_A Protein DOM3Z, DOM-3 ho 26.9 34 0.0012 30.4 2.6 59 3-90 305-363 (417)
13 3u1u_A RNA polymerase-associat 21.5 78 0.0027 23.5 3.4 26 70-95 103-137 (137)
14 3u5c_X RP37, S28, YS14, 40S ri 21.2 26 0.00088 27.3 0.6 14 153-166 105-122 (145)
15 2xzm_L 40S ribosomal protein S 20.5 26 0.0009 27.2 0.5 11 156-166 111-121 (142)
16 2di0_A Activating signal coint 20.2 57 0.002 22.3 2.2 22 84-105 12-35 (71)
No 1
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=100.00 E-value=2e-41 Score=249.74 Aligned_cols=79 Identities=81% Similarity=1.299 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhhchHHHHHHHHhhhhHHHHHHhhCCCCCCCCC
Q psy7157 57 VKDRRPYLASECKSLPAAEKWRSQIIREISRKVAQIQNAGLGEFRIRDLNDEINKLLREKSHWEAQIKELDGPDYARVG 135 (167)
Q Consensus 57 ~~~~RP~~~~~v~~l~~ae~wR~~ii~EIs~ki~~Iqd~~L~E~~IRdLNDeINkLirEK~~WE~rI~eLGG~dy~~~~ 135 (167)
++.+||++|++|+||++||+||++||+|||+||++||||+||||+|||||||||+||+||+|||.||++||||||.+.+
T Consensus 9 ~~~~RP~~~~~v~~l~~AekWR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLGGpdY~~~~ 87 (92)
T 1x4t_A 9 VKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVS 87 (92)
T ss_dssp SCCCCCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSTTTS
T ss_pred ccccCCCChhhcCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998754
No 2
>4gps_A KLLA0E02245P; decapping, 5'-3' exoribonuclease, HYDR; HET: CIT; 2.40A {Kluyveromyces lactis} PDB: 4gpu_A
Probab=81.30 E-value=1.3 Score=39.87 Aligned_cols=72 Identities=11% Similarity=0.170 Sum_probs=51.6
Q ss_pred CCCCCCcccccCCCCccchhhhhHHHHHHhhhccHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCh--HHHHHHHHH
Q psy7157 3 DIDADYYGYRDDDDGVLIPLEMKEEKHRYCHARNAEKAMTTLARWRAAHEHTDQVKDRRPYLASECKSL--PAAEKWRSQ 80 (167)
Q Consensus 3 ~i~~~yyg~rd~~d~~l~~~e~~~e~~~~~MaRN~EKA~s~L~rw~~~k~~~~~~~~~RP~~~~~v~~l--~~ae~wR~~ 80 (167)
+|.--++||||+-+|+|..+|.---...-.|.+ ....|-.++.|-+- .-|-.|-+.
T Consensus 322 GVpkIIVGfRDd~~GiL~~Ie~~~T~EIP~~vk----------------------~~~~~W~~~~CiNF~a~i~~~wL~~ 379 (423)
T 4gps_A 322 PKSDLLIGFRNSYSNELEQLKAYKIQDIYHKIN----------------------NSSIVGKPGKFYKFNPNVANDWFQH 379 (423)
T ss_dssp SSCEEEEEEECTTTCBEEEEEEECHHHHHHHHC----------------------CTTGGGSCCSSGGGCHHHHHHHHHH
T ss_pred CCCEEEEEEecCCCCEEEEEEEEEHHHHHHHHh----------------------cCCCCCCcchhhCcCHHHHHHHHHH
Confidence 566678999999999999998644333222222 12346677888653 568999999
Q ss_pred HHHHHHHHHHHHhhCC
Q psy7157 81 IIREISRKVAQIQNAG 96 (167)
Q Consensus 81 ii~EIs~ki~~Iqd~~ 96 (167)
|++.|.+.+....+++
T Consensus 380 ii~~I~~~~~~~~~~~ 395 (423)
T 4gps_A 380 IFQVLKQNLLLLSQES 395 (423)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHhhhhhccccCCC
Confidence 9999998887766654
No 3
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=70.81 E-value=2.2 Score=32.75 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcccC--CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC--------CCCchhhhhchHH
Q psy7157 39 KAMTTLARWRAAHEHTDQ--VKDRRPYLASECKSLPAAEKWRSQIIREISRKVAQIQNA--------GLGEFRIRDLNDE 108 (167)
Q Consensus 39 KA~s~L~rw~~~k~~~~~--~~~~RP~~~~~v~~l~~ae~wR~~ii~EIs~ki~~Iqd~--------~L~E~~IRdLNDe 108 (167)
+|...|.+=++.++++.. --.++|. -.+.++.+++ -.++.+|+-..|..+-.. .-.+|.|-|||-.
T Consensus 26 kA~e~l~kE~e~k~eeKkkiLaER~~p--L~id~ls~~~--L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~r 101 (133)
T 1j1d_C 26 IAKQELEREAEERRGEKGRALSTRAQP--LELAGLGFAE--LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQK 101 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC--CCCTTCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCCCHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHH
Confidence 677777777777776654 1234553 3477777766 477788887777776542 1245666777666
Q ss_pred HHHH
Q psy7157 109 INKL 112 (167)
Q Consensus 109 INkL 112 (167)
||.|
T Consensus 102 V~Dl 105 (133)
T 1j1d_C 102 IFDL 105 (133)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 4
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=60.15 E-value=3.6 Score=33.17 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhcccC--CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh--------CCCCchhhhhchHH
Q psy7157 39 KAMTTLARWRAAHEHTDQ--VKDRRPYLASECKSLPAAEKWRSQIIREISRKVAQIQN--------AGLGEFRIRDLNDE 108 (167)
Q Consensus 39 KA~s~L~rw~~~k~~~~~--~~~~RP~~~~~v~~l~~ae~wR~~ii~EIs~ki~~Iqd--------~~L~E~~IRdLNDe 108 (167)
+|...|.+=++.++++.. --.++|. -.+.+|.+++ -+++.+|+-..|..+-. ..-.+|.|-|||-.
T Consensus 26 kA~e~L~~E~e~k~eEKkkiLaER~kP--Lnid~Lse~~--L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~r 101 (180)
T 1j1e_C 26 IAKQELEREAEERRGEKGRALSTRAQP--LELAGLGFAE--LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQK 101 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC--CCGGGCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCCCCCHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 677777777777776654 1235553 3677777776 47788888888777654 22268899999999
Q ss_pred HHHHH
Q psy7157 109 INKLL 113 (167)
Q Consensus 109 INkLi 113 (167)
||.|-
T Consensus 102 V~DLr 106 (180)
T 1j1e_C 102 IFDLR 106 (180)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99984
No 5
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=59.36 E-value=16 Score=23.25 Aligned_cols=36 Identities=11% Similarity=0.398 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCCchhhhhchHHHHH
Q psy7157 71 LPAAEKWRSQIIREISRKVAQIQNAGLGEFRIRDLNDEINK 111 (167)
Q Consensus 71 l~~ae~wR~~ii~EIs~ki~~Iqd~~L~E~~IRdLNDeINk 111 (167)
-.+-+.|...|+.|+-+-+++..+. =|..+..|+|+
T Consensus 6 ~~dle~~KqEIL~E~RkElqK~K~E-----IIeAi~~El~~ 41 (45)
T 1use_A 6 YSDLQRVKQELLEEVKKELQKVKEE-----IIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 3678999999999999999888752 34455555554
No 6
>3gz2_P Invasin IPAB, 62 kDa antigen; tetratricopeptide repeat, TPR, chaperone, chaperone binding virulence, secreted, transmembrane; 2.65A {Shigella flexneri}
Probab=42.35 E-value=8.2 Score=26.59 Aligned_cols=28 Identities=36% Similarity=0.523 Sum_probs=22.4
Q ss_pred CCCCchhhhhchHHHHHHHHhhhhHHHHHHhhCC
Q psy7157 95 AGLGEFRIRDLNDEINKLLREKSHWEAQIKELDG 128 (167)
Q Consensus 95 ~~L~E~~IRdLNDeINkLirEK~~WE~rI~eLGG 128 (167)
..||+..|..-||..||||+ .-|.+|-.
T Consensus 26 telgdntiqaandaanklfs------ltiadlta 53 (78)
T 3gz2_P 26 TELGDNTIQAANDAANKLFS------LTIADLTA 53 (78)
T ss_pred eccCccHHHHHHHHhhhhhe------eehhhhcc
Confidence 46899999999999999975 34666643
No 7
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.77 E-value=23 Score=25.00 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.1
Q ss_pred chHHHHHHHHhhhhHHHHHHhhCC
Q psy7157 105 LNDEINKLLREKSHWEAQIKELDG 128 (167)
Q Consensus 105 LNDeINkLirEK~~WE~rI~eLGG 128 (167)
|..++++|=.|...|..||..|=|
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999987633
No 8
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=32.41 E-value=14 Score=27.22 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=25.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhCC--------CCchhhhhchHHHHHH
Q psy7157 67 ECKSLPAAEKWRSQIIREISRKVAQIQNAG--------LGEFRIRDLNDEINKL 112 (167)
Q Consensus 67 ~v~~l~~ae~wR~~ii~EIs~ki~~Iqd~~--------L~E~~IRdLNDeINkL 112 (167)
.+.+|.+++ -.++.+|+-.+|..+-..- -.+|.|.|||-.+|.|
T Consensus 38 ~id~l~~~~--L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 38 NIDHLNEDK--LRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CCSSSCSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 566665554 3677777777777664421 1355555555555554
No 9
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=31.32 E-value=11 Score=30.33 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhcccC--CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhC--------CCCchhhhhchHH
Q psy7157 39 KAMTTLARWRAAHEHTDQ--VKDRRPYLASECKSLPAAEKWRSQIIREISRKVAQIQNA--------GLGEFRIRDLNDE 108 (167)
Q Consensus 39 KA~s~L~rw~~~k~~~~~--~~~~RP~~~~~v~~l~~ae~wR~~ii~EIs~ki~~Iqd~--------~L~E~~IRdLNDe 108 (167)
+|.+.|.+=++.++++.. --.++|.. .+.+ .+++ -.++.+|+-..|..+-.. .-.+|.|-+||-.
T Consensus 24 kA~e~L~~E~e~k~eeKkkiLaER~kPL--nid~-se~~--L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~r 98 (182)
T 1ytz_I 24 LAVTEIEKEAAAKEVEKQNYLAEHSPPL--SLPG-SMQE--LQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQK 98 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCC--CCCC-SHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCC-CHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHH
Confidence 677777777776666554 12344533 3455 4444 477888888888776542 2256778888888
Q ss_pred HHHHH
Q psy7157 109 INKLL 113 (167)
Q Consensus 109 INkLi 113 (167)
||.|-
T Consensus 99 VnDLr 103 (182)
T 1ytz_I 99 LFDLR 103 (182)
T ss_dssp TGGGT
T ss_pred HHHHH
Confidence 88773
No 10
>3fqg_A Protein DIN1; hydrolase, mRNA processing, nucleus, phosphoprotein, rRNA processing, transcription, transcription regulation; 2.00A {Schizosaccharomyces pombe} PDB: 3fqd_B
Probab=27.40 E-value=42 Score=29.06 Aligned_cols=63 Identities=19% Similarity=0.083 Sum_probs=42.6
Q ss_pred CCCCCCcccccCCCCccchhhhhHHHHHHhhhccHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCChHHHHHHHHHHH
Q psy7157 3 DIDADYYGYRDDDDGVLIPLEMKEEKHRYCHARNAEKAMTTLARWRAAHEHTDQVKDRRPYLASECKSLPAAEKWRSQII 82 (167)
Q Consensus 3 ~i~~~yyg~rd~~d~~l~~~e~~~e~~~~~MaRN~EKA~s~L~rw~~~k~~~~~~~~~RP~~~~~v~~l~~ae~wR~~ii 82 (167)
+|.--++|||| ++|+|..+|.---...-.|+++ . +|. ..=+...|-.|-..++
T Consensus 268 Gv~~IvvGfRd-~~g~v~~ie~~~t~eiP~~~~~-------------~----------~~~---~~W~~~~C~~f~~~~L 320 (360)
T 3fqg_A 268 GIGRIIIGFRD-DNGILIEMKELFTHQIPKMLRP-------------Y----------FKP---NDWTPNRLLVVLEHAL 320 (360)
T ss_dssp TCCEEEEEEEC-TTCBEEEEEEEETTHHHHHHGG-------------G----------CCT---TCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEEc-CCCcEEEEEEEEhhHhHHHHhh-------------c----------cCC---CCCCHHHHHHHHHHHH
Confidence 45556899998 5699998885332232222221 0 221 2358889999999999
Q ss_pred HHHHHHHHHH
Q psy7157 83 REISRKVAQI 92 (167)
Q Consensus 83 ~EIs~ki~~I 92 (167)
..|...|+..
T Consensus 321 ~~ik~~v~~~ 330 (360)
T 3fqg_A 321 EWIKQTVKQH 330 (360)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHhcccC
Confidence 9999999864
No 11
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=27.03 E-value=18 Score=27.87 Aligned_cols=12 Identities=42% Similarity=0.335 Sum_probs=10.6
Q ss_pred EeecCCCCCccc
Q psy7157 155 FGAAKDLPVGYL 166 (167)
Q Consensus 155 FG~Ak~LPgVk~ 166 (167)
-|+.+|||||+.
T Consensus 87 Ggrv~DlPGVry 98 (135)
T 2vqe_L 87 GGRVKDLPGVRY 98 (135)
T ss_dssp ECCCTTSTTCCE
T ss_pred CCCcCCCCCeeE
Confidence 699999999984
No 12
>3fqi_A Protein DOM3Z, DOM-3 homolog Z; hydrolase, protein binding; HET: EPE; 2.01A {Mus musculus} PDB: 3fqj_A*
Probab=26.87 E-value=34 Score=30.36 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=40.9
Q ss_pred CCCCCCcccccCCCCccchhhhhHHHHHHhhhccHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCChHHHHHHHHHHH
Q psy7157 3 DIDADYYGYRDDDDGVLIPLEMKEEKHRYCHARNAEKAMTTLARWRAAHEHTDQVKDRRPYLASECKSLPAAEKWRSQII 82 (167)
Q Consensus 3 ~i~~~yyg~rd~~d~~l~~~e~~~e~~~~~MaRN~EKA~s~L~rw~~~k~~~~~~~~~RP~~~~~v~~l~~ae~wR~~ii 82 (167)
+|.--++||||+ +|+|..+|.---...-.|+++ .. ..=+...|..|-..++
T Consensus 305 GVp~IivGfRD~-~g~l~~ie~~~t~eIp~l~k~-----------------------~~-----~~W~~~vc~~f~~~~L 355 (417)
T 3fqi_A 305 GVPHVVAGFRNP-EGFVCSLKTFPTMEMFENVRN-----------------------DR-----EGWNPSVCMNFCAAFL 355 (417)
T ss_dssp TCCEEEEEEECT-TSEEEEEEEEEGGGGGGGTTT-----------------------CT-----TCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEECC-CCcEEEEEEEEhhhhhhhhhh-----------------------cc-----CCCCHHHHHHHHHHHH
Confidence 456678999987 799988885221221122221 11 1348899999999999
Q ss_pred HHHHHHHH
Q psy7157 83 REISRKVA 90 (167)
Q Consensus 83 ~EIs~ki~ 90 (167)
..|.+.|+
T Consensus 356 ~~Ik~~v~ 363 (417)
T 3fqi_A 356 SFAQSTVV 363 (417)
T ss_dssp HHHHHHCC
T ss_pred HHHHhhcc
Confidence 99999997
No 13
>3u1u_A RNA polymerase-associated protein RTF1 homolog; plus-3, transcription elongation, structural genomics, struc genomics consortium, SGC; 1.80A {Homo sapiens} PDB: 2db9_A
Probab=21.51 E-value=78 Score=23.46 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHH---------HHHHHHHHHHHhhC
Q psy7157 70 SLPAAEKWRSQI---------IREISRKVAQIQNA 95 (167)
Q Consensus 70 ~l~~ae~wR~~i---------i~EIs~ki~~Iqd~ 95 (167)
+-.|+++|+..+ +.+|.+|...|+.+
T Consensus 103 te~E~~~w~~~~~~~~~~~Pt~~~l~~K~~~i~~a 137 (137)
T 3u1u_A 103 TESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEA 137 (137)
T ss_dssp CHHHHHHHHHHHHHHTCCCCBHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhC
Confidence 467889999888 66888888888753
No 14
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=21.22 E-value=26 Score=27.32 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=11.2
Q ss_pred eEE----eecCCCCCccc
Q psy7157 153 KYF----GAAKDLPVGYL 166 (167)
Q Consensus 153 rYF----G~Ak~LPgVk~ 166 (167)
+=| |+.+|||||+.
T Consensus 105 ~G~G~~Gg~v~DlPGVry 122 (145)
T 3u5c_X 105 AGFGRKGKAKGDIPGVRF 122 (145)
T ss_dssp ECCSSSSSCCSSSTTCCE
T ss_pred EeccccCCccCCCCceeE
Confidence 557 67999999983
No 15
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=20.54 E-value=26 Score=27.20 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=9.8
Q ss_pred eecCCCCCccc
Q psy7157 156 GAAKDLPVGYL 166 (167)
Q Consensus 156 G~Ak~LPgVk~ 166 (167)
|+.+|||||+.
T Consensus 111 grv~DlPGVry 121 (142)
T 2xzm_L 111 HAVGDIPGVRF 121 (142)
T ss_dssp SCCTTCSSCCE
T ss_pred CccCCCCCceE
Confidence 89999999973
No 16
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=20.19 E-value=57 Score=22.35 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=17.9
Q ss_pred HHHHHHHHHhh--CCCCchhhhhc
Q psy7157 84 EISRKVAQIQN--AGLGEFRIRDL 105 (167)
Q Consensus 84 EIs~ki~~Iqd--~~L~E~~IRdL 105 (167)
++..+|++|+| |.||+..|+.+
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~ 35 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILAC 35 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHH
Confidence 56788899999 99999887654
Done!