RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7157
(167 letters)
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: a.2.15.1
Length = 92
Score = 126 bits (318), Expect = 6e-39
Identities = 64/84 (76%), Positives = 70/84 (83%)
Query: 55 DQVKDRRPYLASECKSLPAAEKWRSQIIREISRKVAQIQNAGLGEFRIRDLNDEINKLLR 114
+VK+RRP+LASEC LP AEKWR QII EIS+KVAQIQNAGLGEFRIRDLNDEINKLLR
Sbjct: 7 GKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLR 66
Query: 115 EKSHWEAQIKELDGPDYARVGPRM 138
EK HWE +IKEL GPDY +V
Sbjct: 67 EKGHWEVRIKELGGPDYGKVSGPS 90
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.042
Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 29/155 (18%)
Query: 19 LIPLEMKEEKHRYCHAR--NAEKAMTTLARWRAAHEHTDQVKDRRPYLASECKSLPAAEK 76
+I +++ + + + N +K T + ++ + + R+ + P +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVLEPAEYRKMFD--RLSVFPPSAH 386
Query: 77 ---------WRSQIIREISRKVAQIQNAGLGE-------FRIRDLNDEINKLLREKSHWE 120
W I ++ V ++ L E I + E+ L +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 121 AQIKELDGPDYARVGPRMLDHDGKEVPGNRGYKYF 155
I + Y P+ D D P Y Y
Sbjct: 447 RSIVD----HYNI--PKTFDSDDLIPPYLDQYFYS 475
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.53
Identities = 25/148 (16%), Positives = 39/148 (26%), Gaps = 41/148 (27%)
Query: 43 TLARWRAAHEHTDQVKDRRP----YLASECKSLPAAEKWRSQIIREISRKVAQI------ 92
LA T VK + A P +K S + R + AQ+
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 93 Q---NAGLGEFR---------IRDLNDEINKLLREKSHWEAQIKELDGPDYARVGPRMLD 140
Q + E R + DL + L E D +V + L+
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR--------TTLDAEKVFTQGLN 214
Query: 141 -----HDGKEVPGNRGYKYFGAAKDLPV 163
+ P Y + P+
Sbjct: 215 ILEWLENPSNTPDK---DYLLSI---PI 236
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.5 bits (64), Expect = 1.1
Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 10/103 (9%)
Query: 34 ARNAEKAMTTLARWRAAHEHTDQVKDRRPYLASECKSLPAAEKWRSQIIR----EISRKV 89
R + M A V+++ + E KS+ + R + R + +
Sbjct: 831 VRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAI 890
Query: 90 AQIQNAGLG------EFRIRDLNDEINKLLREKSHWEAQIKEL 126
+Q +++ + + + E +I +L
Sbjct: 891 VYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.9 bits (62), Expect = 1.9
Identities = 11/106 (10%), Positives = 28/106 (26%), Gaps = 19/106 (17%)
Query: 37 AEKAMTTLARWRAAHEHTDQVKDRRPYLASECKSLPAAEKWRSQIIREISRKVAQIQ--- 93
KA L + ++V+ I + + +A +
Sbjct: 1996 KVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVA----TITALEKSIATYKEEY 2051
Query: 94 ------------NAGLGEFRIRDLNDEINKLLREKSHWEAQIKELD 127
+ + ++ ++ L E+ WE Q + +
Sbjct: 2052 ATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097
>3lhn_A Lipoprotein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2, lipid
binding protein; HET: MSE GOL; 1.42A {Shewanella
oneidensis}
Length = 126
Score = 26.6 bits (58), Expect = 2.6
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 118 HWEAQIK--ELDGPDYARVGP---RMLDHDGKEVPGNRGYKY 154
W++ L VG MLD +G + G Y
Sbjct: 78 DWDSNGSKITLSDGSKYLVGENQLLMLDTEGNRITGGLAEHY 119
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.5 bits (61), Expect = 2.9
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 23 EMKEEKHRYCHARN--AEKAMTTLARWRAAHEHTDQVKDRRPYLASECKSLPA---AEKW 77
E++++ + C +N EK + A E ++ ++ L + A E+
Sbjct: 882 ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEE 941
Query: 78 RSQIIREISRKVAQIQNAGLGEFRIRDLNDEINKLLREKSHWEAQIKEL 126
RSQ ++ +K Q Q L E ++ + KL EK + +IK++
Sbjct: 942 RSQQLQAEKKK-MQQQMLDLEE-QLEEEEAARQKLQLEKVTADGKIKKM 988
Score = 26.7 bits (59), Expect = 4.5
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 10/112 (8%)
Query: 22 LEMKEEKHRYCHARNAE---KAMTTLARWRAAHEHTDQVKDRRPYLASECKSLP----AA 74
EE A+ E AR E + Q++ + + + L
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967
Query: 75 EKWRSQIIREISRKVAQIQNAGLGEFRIRDLNDEINKLLREKSHWEAQIKEL 126
E R ++ E +I+ E I + D+ NKL +E+ E ++ +L
Sbjct: 968 EAARQKLQLEKVTADGKIKKM---EDDILIMEDQNNKLTKERKLLEERVSDL 1016
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat
repeat, VON willebrand factor A, rossmann fold, midas
motif', RNA binding protein; 1.95A {Xenopus laevis}
SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Length = 538
Score = 27.1 bits (59), Expect = 3.1
Identities = 19/151 (12%), Positives = 54/151 (35%), Gaps = 15/151 (9%)
Query: 1 MKDIDADYYGYRDDDDGVLIPLEMKEEKH-------RYCHARNAEKAMTTLARWRAAHEH 53
++ +D+Y +D + + + K+ R H + A + +T +A++ +
Sbjct: 148 LRKAVSDWYNTKDALNLAMAVTKYKQRNGWSHKDLLRLSHIKPANEGLTMVAKYVSKGWK 207
Query: 54 TDQVKDRRPYLASECKSLPAAEKWRSQI--IREISRKVAQIQNAGLGEFRIRDLNDEINK 111
Q + L+ E + + + ++ ++ + I L +
Sbjct: 208 EVQEAYKEKELSPETEKVLKYLEATERVKRTKDELEIIHLIDEYRLVREHLLT------I 261
Query: 112 LLREKSHWEAQIKELDGPDYARVGPRMLDHD 142
L+ K W++ ++++ R +M
Sbjct: 262 HLKSKEIWKSLLQDMPLTALLRNLGKMTADS 292
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 25.2 bits (55), Expect = 6.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 99 EFRIRDLNDEINKLLREKSHWEAQIKELDGP 129
R++ L D++ +LL + H E ++ L P
Sbjct: 6 HHRMKQLEDKVEELLSKNYHLENEVARLRSP 36
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 26.0 bits (58), Expect = 7.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 23 EMKEEKHRYCHARNAEKA 40
E+KE KHR A KA
Sbjct: 386 ELKERKHRIEDAVRNAKA 403
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 26.0 bits (58), Expect = 7.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 23 EMKEEKHRYCHARNAEKA 40
E+KE K R A NA +A
Sbjct: 388 EVKERKDRVDDALNATRA 405
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 26.0 bits (58), Expect = 7.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 23 EMKEEKHRYCHARNAEKA 40
E+KE+KHR+ A NA +A
Sbjct: 386 ELKEKKHRFEDALNATRA 403
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 26.0 bits (58), Expect = 7.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 23 EMKEEKHRYCHARNAEKA 40
EMKE+K R A +A +A
Sbjct: 387 EMKEKKARVEDALHATRA 404
>1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase,
R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa}
SCOP: e.3.1.1 PDB: 1g68_A
Length = 271
Score = 25.7 bits (56), Expect = 8.2
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 58 KDRRPY-LASECKSLPAAEKWRSQIIREISRKVAQ 91
+ + P ++ A+ + R+ I +I +
Sbjct: 230 EHQAPIIVSIYLAQTQASMEERNDAIVKIGHSIFD 264
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Length = 106
Score = 25.0 bits (55), Expect = 8.6
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 83 REISRKVAQIQNAGLGEFRIRDLN 106
ISR+ A+I I DL
Sbjct: 43 MSISRQHAKIIIGNDNSVLIEDLG 66
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA
export, nuclear hydrolase; HET: IHP; 2.50A
{Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B*
3rrm_B* 3rrn_B*
Length = 297
Score = 25.8 bits (56), Expect = 8.9
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 52 EHTDQVKDRRPYLASECKSL-PAAEKWRSQIIREISRKVAQIQNAGLGEFRIRDLNDEIN 110
+ D++ + + K S+ R+I+ K Q+ N+ + + +E+
Sbjct: 14 HYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQ---LFKIQNELT 70
Query: 111 KLLREKSHWE 120
+L+ +
Sbjct: 71 QLINDTKGDS 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.415
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,829,382
Number of extensions: 164176
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 42
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)