RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7157
         (167 letters)



>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 80

 Score =  130 bits (329), Expect = 5e-41
 Identities = 64/78 (82%), Positives = 69/78 (88%)

Query: 57  VKDRRPYLASECKSLPAAEKWRSQIIREISRKVAQIQNAGLGEFRIRDLNDEINKLLREK 116
           VK+RRP+LASEC  LP AEKWR QII EIS+KVAQIQNAGLGEFRIRDLNDEINKLLREK
Sbjct: 3   VKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREK 62

Query: 117 SHWEAQIKELDGPDYARV 134
            HWE +IKEL GPDY +V
Sbjct: 63  GHWEVRIKELGGPDYGKV 80


>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 359

 Score = 29.1 bits (65), Expect = 0.25
 Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 8/115 (6%)

Query: 30  RYCHARNAEKAMTTLARWRAAHEHTDQVKDRRPYLASECKSLPAAEKWRSQIIREISRKV 89
           R  H + A + +T +A++ +      Q   +   L+ E + +    +   ++ R      
Sbjct: 180 RLSHIKPANEGLTMVAKYVSKGWKEVQEAYKEKELSPETEKVLKYLEATERVKRTKDELE 239

Query: 90  AQ--IQNAGLGEFRIRDLNDEINKLLREKSHWEAQIKELDGPDYARVGPRMLDHD 142
               I    L           +   L+ K  W++ ++++      R   +M    
Sbjct: 240 IIHLIDEYRLV------REHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADS 288


>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 253

 Score = 24.7 bits (54), Expect = 6.8
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 14/53 (26%)

Query: 36  NAEKAMTTLARWRAAHEHTDQVKDRRPYLASECKSLPAAEKWRSQIIREISRK 88
             +K ++ LA+W+ A E           +++  +SLP  E+   QII  ++RK
Sbjct: 66  AGQKRLSQLAKWKTAEE-----------VSALVRSLPKEEQ-PKQII--VTRK 104


>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 133

 Score = 24.1 bits (52), Expect = 8.1
 Identities = 3/26 (11%), Positives = 9/26 (34%)

Query: 101 RIRDLNDEINKLLREKSHWEAQIKEL 126
           +  +L   + K+          + +L
Sbjct: 96  QKNELESTLQKMGENLRAITDIMMKL 121


>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 219

 Score = 24.4 bits (53), Expect = 8.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 14/53 (26%)

Query: 36 NAEKAMTTLARWRAAHEHTDQVKDRRPYLASECKSLPAAEKWRSQIIREISRK 88
            +K +  LA+W+ A E           +A+  +SLP  E+   QII  ++RK
Sbjct: 58 AGQKRLGQLAKWKTAEE-----------VAALIRSLPVEEQ-PKQII--VTRK 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 689,414
Number of extensions: 31066
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 14
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)