Query psy7158
Match_columns 402
No_of_seqs 181 out of 675
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 19:39:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 41.2 76 0.0026 24.4 6.4 50 13-62 26-80 (81)
2 3lvg_D LCB, clathrin light cha 40.7 21 0.00071 31.4 3.5 39 2-40 85-127 (190)
3 4ev6_A Magnesium transport pro 35.2 2.3E+02 0.008 26.7 10.6 36 28-63 194-230 (339)
4 3lvh_D LCB, clathrin light cha 34.2 24 0.00081 31.7 2.9 39 2-40 100-142 (205)
5 1hjb_A Ccaat/enhancer binding 29.9 65 0.0022 25.0 4.4 32 9-40 31-62 (87)
6 1a92_A Delta antigen; leucine 28.5 22 0.00075 24.6 1.3 27 3-29 5-36 (50)
7 1xi4_J LCA, clathrin light cha 26.8 65 0.0022 24.0 3.8 41 2-42 9-53 (70)
8 1ci6_A Transcription factor AT 26.6 88 0.003 22.5 4.4 31 10-40 19-49 (63)
9 2iub_A CORA, divalent cation t 25.4 4.4E+02 0.015 25.0 11.2 33 27-59 217-250 (363)
10 1gu4_A CAAT/enhancer binding p 24.8 93 0.0032 23.6 4.4 32 9-40 31-62 (78)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.15 E-value=76 Score=24.37 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=33.3
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHH----HHHHHHhhhh-hhchHHHHHHHHHhhcc
Q psy7158 13 KMEEEEEEKKNKKGEEEEEISMR----LVHSLINVSN-AAISLTDLGFFASHVKT 62 (402)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~e----~~~~L~~L~~-~~LN~tgF~KILKKyDK 62 (402)
+||=|+.+.|+..+.++.+.+.. .-+....|+. ..-=-.-.+++|.|.|.
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57888888888888887777555 3334444554 44445667778877664
No 2
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=40.67 E-value=21 Score=31.37 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=22.6
Q ss_pred ccccccHHHHhhhhHHH----HHHhhhhhHHHHHHHHHHHHHH
Q psy7158 2 EPLLKWKEEKKKMEEEE----EEKKNKKGEEEEEISMRLVHSL 40 (402)
Q Consensus 2 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~~~~L 40 (402)
|++-||+||.++.-||+ ++||-.-.++-.+.+-++|+.-
T Consensus 85 EsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenY 127 (190)
T 3lvg_D 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127 (190)
T ss_dssp THHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 66889999988765444 2333333333344466666554
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=35.21 E-value=2.3e+02 Score=26.71 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhhh-hhchHHHHHHHHHhhccc
Q psy7158 28 EEEEISMRLVHSLINVSN-AAISLTDLGFFASHVKTL 63 (402)
Q Consensus 28 ~~~~~~~e~~~~L~~L~~-~~LN~tgF~KILKKyDK~ 63 (402)
+.++.+.+.-+.+..++. ..-|.....++.+.....
T Consensus 194 ~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~ 230 (339)
T 4ev6_A 194 EVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPI 230 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTT
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccccc
Confidence 444556666677777765 556667777766654433
No 4
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=34.22 E-value=24 Score=31.73 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=22.3
Q ss_pred ccccccHHHHhhhhHHHH----HHhhhhhHHHHHHHHHHHHHH
Q psy7158 2 EPLLKWKEEKKKMEEEEE----EKKNKKGEEEEEISMRLVHSL 40 (402)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~e~~~~L 40 (402)
|.+-||+||.++.-||+. +||-.-.++=.+-|.++|..-
T Consensus 100 EsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~y 142 (205)
T 3lvh_D 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 142 (205)
T ss_dssp THHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999887654443 333333333344455666543
No 5
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.88 E-value=65 Score=25.04 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=25.1
Q ss_pred HHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy7158 9 EEKKKMEEEEEEKKNKKGEEEEEISMRLVHSL 40 (402)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~L 40 (402)
.+|+++.+++...+...+++|+..+..-+..|
T Consensus 31 R~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888888776654
No 6
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=28.45 E-value=22 Score=24.59 Aligned_cols=27 Identities=48% Similarity=0.566 Sum_probs=15.4
Q ss_pred cccccHHHHhhhhHHH-----HHHhhhhhHHH
Q psy7158 3 PLLKWKEEKKKMEEEE-----EEKKNKKGEEE 29 (402)
Q Consensus 3 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 29 (402)
-|-+|-+.+||.|+-| ..||.+++|+|
T Consensus 5 ~LeqWv~~Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 5 ILEQWVSGRKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3557877776665432 23555555555
No 7
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=26.82 E-value=65 Score=24.00 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=23.8
Q ss_pred ccccccHHHHhhhhHHHHH----HhhhhhHHHHHHHHHHHHHHHh
Q psy7158 2 EPLLKWKEEKKKMEEEEEE----KKNKKGEEEEEISMRLVHSLIN 42 (402)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~L~~ 42 (402)
|++-+|+|+.++.-+|+.. ||-.-.++-.+.+-++|+..+.
T Consensus 9 E~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~ 53 (70)
T 1xi4_J 9 ESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDE 53 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999998876555433 3333233333456666665544
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.59 E-value=88 Score=22.53 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy7158 10 EKKKMEEEEEEKKNKKGEEEEEISMRLVHSL 40 (402)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~L 40 (402)
+||+++.++.+.+.+.++.++..+..-...|
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888887766554
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=25.45 E-value=4.4e+02 Score=25.02 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhchHHHHHHHHHh
Q psy7158 27 EEEEEISMRLVHSLINVSN-AAISLTDLGFFASH 59 (402)
Q Consensus 27 ~~~~~~~~e~~~~L~~L~~-~~LN~tgF~KILKK 59 (402)
.+.++.++++-+.+..++. ..-+...+.++.+.
T Consensus 217 ~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 250 (363)
T 2iub_A 217 KETVQRTHQLKRNLVELRKTIWPLREVLSSLYRD 250 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777788888875 77778888887753
No 10
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.84 E-value=93 Score=23.59 Aligned_cols=32 Identities=28% Similarity=0.257 Sum_probs=25.0
Q ss_pred HHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy7158 9 EEKKKMEEEEEEKKNKKGEEEEEISMRLVHSL 40 (402)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~L 40 (402)
.+|+|+.+++..++...+++|+..+..-+..|
T Consensus 31 R~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888888888766654
Done!