Query psy7158
Match_columns 402
No_of_seqs 181 out of 675
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 19:39:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7158.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7158hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2g7oa1 a.241.1.1 (A:60-127) T 21.4 32 0.0023 23.3 2.8 56 48-107 2-66 (68)
2 d1nh2d1 a.32.1.1 (D:5-54) Smal 17.0 37 0.0027 22.1 2.2 33 32-66 14-46 (50)
3 d1tubb2 d.79.2.1 (B:246-437) T 15.5 40 0.0029 27.2 2.8 52 42-93 124-177 (184)
4 d1tuba2 d.79.2.1 (A:246-440) T 14.0 42 0.0031 27.4 2.5 43 51-93 141-185 (195)
5 d1nvpd1 a.32.1.1 (D:3-53) Smal 13.8 46 0.0034 21.6 2.1 33 32-66 12-44 (51)
6 d2nsza1 a.118.1.14 (A:322-450) 12.5 31 0.0023 26.4 1.1 30 88-117 3-32 (129)
7 d2cqna1 a.159.2.1 (A:743-806) 10.6 1.1E+02 0.008 20.6 3.3 39 2-41 20-59 (64)
8 d1ntca_ a.4.1.12 (A:) DNA-bind 10.0 1.1E+02 0.008 21.3 3.5 32 86-117 42-76 (91)
9 d2btoa2 d.79.2.1 (A:253-432) T 9.7 67 0.0049 25.7 2.3 32 51-82 129-161 (180)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 8.8 1.6E+02 0.012 17.3 3.2 22 128-149 11-32 (37)
No 1
>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
Probab=21.44 E-value=32 Score=23.29 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=34.0
Q ss_pred chHHHHHHHHHhh--------ccccccccchHHHHhccc-cCCcccchhHHHHHHHHHHHHHHhhccCc
Q psy7158 48 ISLTDLGFFASHV--------KTLLNVDVGAKWRAEHVD-VSHFYVNKDINHLISETEATVTSELEEGD 107 (402)
Q Consensus 48 LN~tgF~KILKKy--------DK~~~~~~~~~~~~~~v~-~s~F~~~~~l~~li~~ve~lYa~~f~~gd 107 (402)
.|.++|.|.|=.+ .|++|... +..+|. +..|.=..-++++.+++..-..++|..+|
T Consensus 2 FNQ~~FNk~LlE~vvKTQ~s~~KiLGI~~----lSPHvsgnpkfe~~~mv~~I~e~vs~~m~~fFpend 66 (68)
T d2g7oa1 2 FNQTEFNKLLLECVVKTQSSVAKILGIES----LSPHVSGNSKFEYANMVEDIREKVSSEMERFFPKND 66 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCGGGTTCGGGCHHHHHHHHHHHHHHHHHHHSCSCT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccc----cCcccCCCcchhHHHHHHHHHHHHHHHHHHhccccc
Confidence 4888888887655 33333321 122343 23355456688888888888878776554
No 2
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.04 E-value=37 Score=22.05 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHHHHHhhcccccc
Q psy7158 32 ISMRLVHSLINVSNAAISLTDLGFFASHVKTLLNV 66 (402)
Q Consensus 32 ~~~e~~~~L~~L~~~~LN~tgF~KILKKyDK~~~~ 66 (402)
++.+-+..| .++..+.-.=-.|+|.+|||....
T Consensus 14 ~L~dtLDel--i~~~~I~p~LA~kVL~qFDk~i~~ 46 (50)
T d1nh2d1 14 SLVDALDTL--ISDGRIEASLAMRVLETFDKVVAE 46 (50)
T ss_dssp HHHHHHHHH--HHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHH
Confidence 345555554 556788888889999999998643
No 3
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=15.52 E-value=40 Score=27.25 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=30.3
Q ss_pred hhhhhhchHHHHHHHHHhhccccccccchHHHH-hccccCCccc-chhHHHHHH
Q psy7158 42 NVSNAAISLTDLGFFASHVKTLLNVDVGAKWRA-EHVDVSHFYV-NKDINHLIS 93 (402)
Q Consensus 42 ~L~~~~LN~tgF~KILKKyDK~~~~~~~~~~~~-~~v~~s~F~~-~~~l~~li~ 93 (402)
+|.|..-=..-|.+|++||||......--.++. +-.+...|.. .+.++.+++
T Consensus 124 ~l~N~TsI~~~f~~~~~~fd~l~~kkAflh~Y~~egmee~eF~ea~e~i~~li~ 177 (184)
T d1tubb2 124 FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS 177 (184)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHTCCCCCCCHHHHTSSCCSTTTHHHHHHHHHHHH
T ss_pred eecCCchHHHHHHHHHHHHHHHHhcChhHHhhccCCCcHHhHHHHHHHHHHHHH
Confidence 344422223668889999999998765544443 4566666643 233444444
No 4
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=14.02 E-value=42 Score=27.40 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=25.5
Q ss_pred HHHHHHHHhhccccccccchHHHH-hccccCCccc-chhHHHHHH
Q psy7158 51 TDLGFFASHVKTLLNVDVGAKWRA-EHVDVSHFYV-NKDINHLIS 93 (402)
Q Consensus 51 tgF~KILKKyDK~~~~~~~~~~~~-~~v~~s~F~~-~~~l~~li~ 93 (402)
.-|.+|++||||......--.++. +-.+...|.. .+.++.+++
T Consensus 141 ~~f~~i~~~Fdkl~~rkAflh~Y~~egmee~eF~EA~e~l~~li~ 185 (195)
T d1tuba2 141 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEK 185 (195)
T ss_dssp HHHHHHHHHHHHHTTTTCCTTTGGGGSCCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHhcccCCcHHHHHHHHHHHHHHHH
Confidence 347889999999987754433333 4455556643 233444444
No 5
>d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.78 E-value=46 Score=21.63 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHHHHHhhcccccc
Q psy7158 32 ISMRLVHSLINVSNAAISLTDLGFFASHVKTLLNV 66 (402)
Q Consensus 32 ~~~e~~~~L~~L~~~~LN~tgF~KILKKyDK~~~~ 66 (402)
.+.|-++.+ .++..+.-.=-.|+|.+|||....
T Consensus 12 tL~dtLDel--i~~~~I~p~LA~kVL~qFDk~i~~ 44 (51)
T d1nvpd1 12 SLQESLDEL--IQSQQITPQLALQVLLQFDKAINA 44 (51)
T ss_dssp HHHHHHHHH--HHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHH
Confidence 355555554 556788888888999999998754
No 6
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.46 E-value=31 Score=26.42 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhccCcHHHHHhhcCC
Q psy7158 88 INHLISETEATVTSELEEGDRQKAMKRLRV 117 (402)
Q Consensus 88 l~~li~~ve~lYa~~f~~gdrk~A~~~LR~ 117 (402)
++.+.++++.+...+|.+||.++|..-++.
T Consensus 3 v~~l~kk~~~ll~EY~~~~D~~Ea~~~l~e 32 (129)
T d2nsza1 3 VNHLVKEIDMLLKEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 457888899999999999999998888774
No 7
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=1.1e+02 Score=20.61 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=25.5
Q ss_pred ccccccHHHHhhhhHHHHHHhhhhhHHH-HHHHHHHHHHHH
Q psy7158 2 EPLLKWKEEKKKMEEEEEEKKNKKGEEE-EEISMRLVHSLI 41 (402)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~L~ 41 (402)
+|-.+|.|-+.+-|.|++=+- ..+|+| .++++|+.|+|-
T Consensus 20 ~~~s~WeevR~r~ene~AF~a-itlEsERiRiFkef~~~le 59 (64)
T d2cqna1 20 ELDAVWEDIRERFVKEPAFED-ITLESERKRIFKDFMHVLE 59 (64)
T ss_dssp CTTCCHHHHHHHHTTSHHHHT-CCCHHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHhccHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 455689988888887776554 455555 455566667653
No 8
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=9.96 E-value=1.1e+02 Score=21.29 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHh---hccCcHHHHHhhcCC
Q psy7158 86 KDINHLISETEATVTSE---LEEGDRQKAMKRLRV 117 (402)
Q Consensus 86 ~~l~~li~~ve~lYa~~---f~~gdrk~A~~~LR~ 117 (402)
+.+++.++++|+.+... -++||+.+|-+.|-.
T Consensus 42 ~~l~~~~~~~E~~lI~~aL~~~~Gn~~~AA~~LGI 76 (91)
T d1ntca_ 42 NLLSEAQPELERTLLTTALRHTQGHKQEAARLLGW 76 (91)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHCC
Confidence 45778888888877653 379999999888854
No 9
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}
Probab=9.75 E-value=67 Score=25.65 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=20.0
Q ss_pred HHHHHHHHhhccccccccchHHHH-hccccCCc
Q psy7158 51 TDLGFFASHVKTLLNVDVGAKWRA-EHVDVSHF 82 (402)
Q Consensus 51 tgF~KILKKyDK~~~~~~~~~~~~-~~v~~s~F 82 (402)
.-|.+|++||||......--.++. +-.+...|
T Consensus 129 ~~f~~~~~~F~~m~~rkAflh~Y~~egmee~eF 161 (180)
T d2btoa2 129 RVLDRICHNFDKLWQRKAFANWYLNEGMSEEQI 161 (180)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcChhHHHhcCCCCcHHHH
Confidence 357788999999997764444443 23444444
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.84 E-value=1.6e+02 Score=17.30 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy7158 128 TTFKVGLFLGCFAILFAIILLR 149 (402)
Q Consensus 128 ~~F~~GlflG~s~~lli~~li~ 149 (402)
..=+.+++.|.-++....++.+
T Consensus 11 eLNrtsLy~GlLlifvl~vLFs 32 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFS 32 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHH
Confidence 3346778888777766655554
Done!