RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7158
         (402 letters)



>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 28.5 bits (64), Expect = 1.2
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 4   LLKWKEEKKKMEEEEEEKKNKKGEEEEE 31
               KE+KK++  +E+++   + E+ EE
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEE 128


>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
           protein 1 (GBP1), C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 300

 Score = 28.6 bits (63), Expect = 1.4
 Identities = 6/27 (22%), Positives = 17/27 (62%)

Query: 6   KWKEEKKKMEEEEEEKKNKKGEEEEEI 32
           K + ++ ++ +E+E     K +E+E++
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQL 277



 Score = 27.0 bits (59), Expect = 4.0
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 1   MEPLLKWKEEKKKMEEEEEEKKNKKGEEEEE 31
           ME   +  +E  K   E+ E    +  +E+E
Sbjct: 234 MEQKERSYQEHLKQLTEKMENDRVQLLKEQE 264


>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 138

 Score = 27.2 bits (60), Expect = 1.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 5  LKWKEEKKKMEEEEEEKKNKKGEEEEEISMRLVH 38
             +E +KK+E  EE +K ++ E  + ++ +  H
Sbjct: 42 PSLEEIQKKLEAAEERRKYQEAELLKHLAEKREH 75


>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
           N-terminal DNA-binding fragment {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 230

 Score = 27.8 bits (62), Expect = 2.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 8   KEEKKKMEEEEEEKKNKKGEEEEE 31
            E +K+M +EE+ K  ++ E+  +
Sbjct: 113 TEARKQMSKEEKLKIKEENEKLLK 136


>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African
           clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 196

 Score = 27.3 bits (60), Expect = 2.6
 Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 16/138 (11%)

Query: 30  EEISMRLVHSLINVSNAAISLTDLGFFASHVKTLLNVDVGAKWRAEHVDVSHFYVNKDIN 89
           EE   R +   +  + A + +T+  + +S V                  V+HFY+ +   
Sbjct: 70  EEGLKRELEEELGPALATVEVTEDDYRSSQV-----------REHPQKCVTHFYIKELKL 118

Query: 90  HLISETEATVTSELEEGDRQKAMKRLRVPPLGEQQSPWTTFKVGLFLGC--FAILFAIIL 147
             I   EA   +  + G     + R+ +  L ++      F    F+G     +L+A+  
Sbjct: 119 EEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRS 178

Query: 148 LRVFFDTSQEDFKMAMRL 165
           L++     ++  +  ++ 
Sbjct: 179 LKLL---REDQIQEVLKA 193


>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 332

 Score = 27.2 bits (60), Expect = 3.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 7   WKEEKKKMEEEEEEKKNKKGEEEEE 31
            KE +K+ E EE+ ++ K  +E+ E
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAE 328


>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 113

 Score = 25.5 bits (55), Expect = 6.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 6   KWKEEKKKMEEEEEEKKNKK 25
             KE  KK+ E+++E  NK 
Sbjct: 89  VEKEALKKIIEDQQESLNKW 108


>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 135

 Score = 25.3 bits (55), Expect = 9.9
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 1   MEPLLKWKEEKKKMEEEEEEKKNKKGEEEE 30
            E L + K    K  +     +N    EEE
Sbjct: 80  KEVLQECKTVALKRRKASSRLENLGIPEEE 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,522,379
Number of extensions: 70939
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 18
Length of query: 402
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,213,086
Effective search space: 382122090
Effective search space used: 382122090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)