BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7160
         (67 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
 pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
          Length = 697

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 2   LRSICSQGDCRSYNYVVGISCEKEPDWTDLAVIARIVPK 40
           ++++  QGDCRSY+YV GIS + EPDW  L  +AR++P+
Sbjct: 518 IKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPR 556


>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
           Burnetii
 pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
           Burnetii
 pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
           Burnetii
 pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
           Burnetii
          Length = 527

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 11/53 (20%)

Query: 2   LRSICSQGDCRSYNYVVGISCEKEPD-----WTDL------AVIARIVPKAKD 43
           L+S+  +GD R Y Y++ +   K  D     W DL       V  RIV + K+
Sbjct: 456 LKSVGVKGDARHYGYIIALRAVKTVDFMTAQWADLPHEFLSKVSHRIVNEIKE 508


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,986,624
Number of Sequences: 62578
Number of extensions: 57925
Number of successful extensions: 110
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 2
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)