BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7160
         (67 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P49915|GUAA_HUMAN GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1
           SV=1
          Length = 693

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 2   LRSICSQGDCRSYNYVVGISCEKEPDWTDLAVIARIVPK 40
           ++++  QGDCRSY+YV GIS + EPDW  L  +AR++P+
Sbjct: 514 IKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPR 552


>sp|Q5RA96|GUAA_PONAB GMP synthase [glutamine-hydrolyzing] OS=Pongo abelii GN=GMPS PE=2
           SV=1
          Length = 693

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 2   LRSICSQGDCRSYNYVVGISCEKEPDWTDLAVIARIVPK 40
           ++++  QGDCRSY+YV GIS + EPDW  L  +AR++P+
Sbjct: 514 IKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPR 552


>sp|Q3THK7|GUAA_MOUSE GMP synthase [glutamine-hydrolyzing] OS=Mus musculus GN=Gmps PE=1
           SV=2
          Length = 693

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 2   LRSICSQGDCRSYNYVVGISCEKEPDWTDLAVIARIVPK 40
           ++++  QGDCRSY+YV GIS + EPDW  L  +AR++P+
Sbjct: 514 IKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPR 552


>sp|Q4V7C6|GUAA_RAT GMP synthase [glutamine-hydrolyzing] OS=Rattus norvegicus GN=Gmps
           PE=1 SV=1
          Length = 693

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 30/39 (76%)

Query: 2   LRSICSQGDCRSYNYVVGISCEKEPDWTDLAVIARIVPK 40
           ++++  QGDCRSY+YV GIS + EPDW  L  +AR++P+
Sbjct: 514 IKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPR 552


>sp|Q09580|GUAA_CAEEL Probable GMP synthase [glutamine-hydrolyzing] OS=Caenorhabditis
           elegans GN=M106.4 PE=2 SV=3
          Length = 745

 Score = 37.4 bits (85), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 2   LRSICSQGDCRSYNYVVGISCEKEP-DWTDLAVIARIVPK 40
           ++++  QGD RSY+Y V +S E+ P  W  L   A ++PK
Sbjct: 555 IKTVGVQGDARSYSYAVALSTEQRPIPWKLLFAYASVIPK 594


>sp|A1SYT6|GUAA_PSYIN GMP synthase [glutamine-hydrolyzing] OS=Psychromonas ingrahamii
           (strain 37) GN=guaA PE=3 SV=1
          Length = 526

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 2   LRSICSQGDCRSYNYVVGISCEKEPDW 28
           +RS+   GDCR Y++VV + C +  D+
Sbjct: 455 VRSVGVMGDCRKYDWVVSLRCVETIDF 481


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,990,546
Number of Sequences: 539616
Number of extensions: 758091
Number of successful extensions: 1805
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1798
Number of HSP's gapped (non-prelim): 8
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)