Query psy7160
Match_columns 67
No_of_seqs 131 out of 527
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 19:43:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00958 GMP_synt_C: GMP synth 99.8 2.5E-21 5.5E-26 123.2 3.1 57 2-60 23-86 (93)
2 PRK00919 GMP synthase subunit 99.8 1.9E-20 4E-25 137.6 4.7 56 2-59 236-298 (307)
3 COG0519 GuaA GMP synthase, PP- 99.8 3.8E-20 8.3E-25 137.4 4.9 56 2-59 244-306 (315)
4 cd01997 GMP_synthase_C The C-t 99.8 4.3E-20 9.3E-25 134.7 4.3 56 2-59 225-287 (295)
5 TIGR00884 guaA_Cterm GMP synth 99.7 8.4E-18 1.8E-22 123.1 5.1 57 2-60 240-303 (311)
6 PLN02347 GMP synthetase 99.7 2.8E-17 6E-22 127.8 5.1 57 2-60 465-528 (536)
7 PRK00074 guaA GMP synthase; Re 99.7 6.6E-17 1.4E-21 124.3 5.3 57 2-60 440-503 (511)
8 KOG1622|consensus 99.4 7.4E-14 1.6E-18 109.4 2.3 54 2-57 472-541 (552)
9 KOG4022|consensus 32.7 44 0.00094 24.4 2.4 26 24-49 191-216 (236)
10 COG1351 THY1 Predicted alterna 31.6 7.1 0.00015 28.8 -1.8 40 5-44 188-234 (273)
11 PF02831 gpW: gpW; InterPro: 30.6 24 0.00052 21.2 0.7 15 3-17 22-36 (68)
12 PF15513 DUF4651: Domain of un 30.1 24 0.00051 21.1 0.6 12 7-18 41-52 (62)
13 PF10042 DUF2278: Uncharacteri 29.8 55 0.0012 23.4 2.5 27 32-64 122-148 (206)
14 COG0519 GuaA GMP synthase, PP- 27.0 32 0.00069 26.4 1.0 23 26-48 278-300 (315)
15 PHA02751 hypothetical protein; 26.8 31 0.00067 25.1 0.8 24 38-63 119-142 (233)
No 1
>PF00958 GMP_synt_C: GMP synthase C terminal domain domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations []. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains [].; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process; PDB: 2VXO_A 2YWC_D 2YWB_D 2DPL_B 3A4I_A 3UOW_B 3TQI_D 1GPM_C.
Probab=99.83 E-value=2.5e-21 Score=123.24 Aligned_cols=57 Identities=28% Similarity=0.506 Sum_probs=49.4
Q ss_pred ceeeeeeCCCccccceEEEec---cC--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCcc
Q psy7160 2 LRSICSQGDCRSYNYVVGISC---EK--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQV 60 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa---~D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~~ 60 (67)
+||||||||+|||+|+++||+ .| +|+|.+| +.|.+++.+|+|++ +|||||+|-..++
T Consensus 23 vrsvGV~GD~RtY~~~vvlR~v~s~D~MTa~~~~~p~~~L~~is~~I~n~v--~~V~RV~yDiT~K 86 (93)
T PF00958_consen 23 VRSVGVQGDQRTYGYVVVLRAVESEDFMTADWARLPWELLEEISSRITNEV--PGVNRVVYDITSK 86 (93)
T ss_dssp EEEEECCTTTCEEEEEEEEEEEEESSSSSEEE-TB-HHHHHHHHHHHHHHS--TTEEEEEEE---B
T ss_pred CCcccccCCccceeeeEEEEEeecccccccccccCCHHHHHHHHHHHHHcC--CCccEEEEeccCC
Confidence 699999999999999999999 45 3899987 99999999999999 9999999987654
No 2
>PRK00919 GMP synthase subunit B; Validated
Probab=99.81 E-value=1.9e-20 Score=137.59 Aligned_cols=56 Identities=20% Similarity=0.362 Sum_probs=51.5
Q ss_pred ceeeeeeCCCccccceEEEecc---C--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCc
Q psy7160 2 LRSICSQGDCRSYNYVVGISCE---K--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQ 59 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa~---D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~ 59 (67)
+||||||||+|||+|+++||++ | +|+|++| ++|+++|+||+||| +|||||||--.+
T Consensus 236 ~~~~g~~g~~r~~~~~~~~r~~~~~d~mta~~~~~~~~~l~~~~~~i~~~~--~~~~~v~~~~~~ 298 (307)
T PRK00919 236 VKATGVKGDNRVYGWIVAVRAVESRDGMTADAPELPWEVLQRISSRITSEI--PEVARVVYDITP 298 (307)
T ss_pred ceeeeecCCccccCceEEEEEEccCCCcccCcccCCHHHHHHHHHHhcccC--CCceeeecCCCC
Confidence 6999999999999999999994 4 4999998 99999999999999 999999996544
No 3
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=99.80 E-value=3.8e-20 Score=137.41 Aligned_cols=56 Identities=25% Similarity=0.497 Sum_probs=51.3
Q ss_pred ceeeeeeCCCccccceEEEecc---C--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCc
Q psy7160 2 LRSICSQGDCRSYNYVVGISCE---K--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQ 59 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa~---D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~ 59 (67)
+||||||||+|||+|+++||++ | +|+|.+| ++|.++|+||+||| +|||||||=-.+
T Consensus 244 vksvGV~GD~RtY~~~valRaV~s~D~MTa~~~~lp~~~L~~is~RI~nEv--~~V~RVvYDIts 306 (315)
T COG0519 244 VKSVGVMGDGRTYGYVVALRAVESIDGMTADWARLPYDVLEKISNRITNEV--PGVNRVVYDITS 306 (315)
T ss_pred cceeeecCCCcccCceEEEEEEecccccccccccCCHHHHHHHHHHhhhcC--CCcceEEeeCCC
Confidence 7999999999999999999993 5 4999997 99999999999999 999999996443
No 4
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=99.79 E-value=4.3e-20 Score=134.66 Aligned_cols=56 Identities=25% Similarity=0.503 Sum_probs=51.2
Q ss_pred ceeeeeeCCCccccceEEEecc---C--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCc
Q psy7160 2 LRSICSQGDCRSYNYVVGISCE---K--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQ 59 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa~---D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~ 59 (67)
+||||||||+|||+|+++||++ | +|+|.+| ++|.++++||+||| +|||||+|=-.+
T Consensus 225 ~~~vgv~gd~r~y~~~~~~r~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~--~~~~~v~~d~~~ 287 (295)
T cd01997 225 IKSVGVMGDQRTYGYVVALRAVESSDFMTADWARLPYEVLEKISNRITNEV--PGVNRVVYDITS 287 (295)
T ss_pred cccccccCCccccccEEEEEEEccCCcccCCCccCCHHHHHHHHHHhhccC--CCeeeeecCCCC
Confidence 6999999999999999999994 4 4999998 99999999999999 999999996443
No 5
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=99.71 E-value=8.4e-18 Score=123.13 Aligned_cols=57 Identities=23% Similarity=0.465 Sum_probs=52.1
Q ss_pred ceeeeeeCCCccccceEEEec---cC--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCcc
Q psy7160 2 LRSICSQGDCRSYNYVVGISC---EK--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQV 60 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa---~D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~~ 60 (67)
|||||||||+|||+|+++||+ .| +|+|+++ ++|.+++.+|+|++ +|||||+|-..++
T Consensus 240 ~~~vgv~gd~r~y~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~v--~~v~rv~ydi~~k 303 (311)
T TIGR00884 240 VKSVGVMGDGRTYGYVIALRAVESIDGMTADWARLPYDFLERISNRITNEV--PGVNRVVYDITSK 303 (311)
T ss_pred ccccccCCCCCcccceEEEEEEecCCccccCcccCCHHHHHHHHHHHhhcC--CCcceEEeeCCCC
Confidence 699999999999999999999 35 4999876 99999999999999 9999999987654
No 6
>PLN02347 GMP synthetase
Probab=99.68 E-value=2.8e-17 Score=127.84 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=52.9
Q ss_pred ceeeeeeCCCccccceEEEecc---C--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCcc
Q psy7160 2 LRSICSQGDCRSYNYVVGISCE---K--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQV 60 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa~---D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~~ 60 (67)
+||||||||+|||+|+++||++ | +|+|++| ++|.+++.+|+|++ +|||||+|-..++
T Consensus 465 ~~~vgv~~d~r~y~~~~~lr~v~~~d~mta~~~~~~~~~l~~~~~~i~~~~--~~v~rv~yd~t~k 528 (536)
T PLN02347 465 VKSVGVQGDQRTHSHVVALRAVTSEDGMTADWYHFEHKFLDDVSRKICNEV--RGVNRVVYDITSK 528 (536)
T ss_pred ccccccCCCCCcccceEEEEEeccCccCCCCcccCCHHHHHHHHHHHhhcC--CCcceEEeeCCCC
Confidence 6999999999999999999993 5 4999998 99999999999999 9999999988765
No 7
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.67 E-value=6.6e-17 Score=124.31 Aligned_cols=57 Identities=25% Similarity=0.479 Sum_probs=52.7
Q ss_pred ceeeeeeCCCccccceEEEecc---C--CCCCcch--HHHHHHhhhhhccCCCCCcceEEEecCcc
Q psy7160 2 LRSICSQGDCRSYNYVVGISCE---K--EPDWTDL--AVIARIVPKAKDKESKKETNNITLMRGQV 60 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~LRa~---D--~a~w~~L--e~La~is~ri~n~Vnr~~vnRVvy~~g~~ 60 (67)
+||||||||+|||+|+++||++ | +|+|++| ++|.+++++|+|++ +|||||+|...++
T Consensus 440 ~~~vgv~gd~r~y~~~~~lr~~~~~d~mt~~~~~~~~~~l~~~~~~i~~~~--~~v~rv~yd~~~k 503 (511)
T PRK00074 440 VKSVGVMGDGRTYDYVVALRAVTSIDGMTADWARLPYDFLEKISNRIINEV--KGVNRVVYDITSK 503 (511)
T ss_pred cceeeeCCCCCccceEEEEEEEcccCccccCCccCCHHHHHHHHHHHhhcC--CCcceEEEECCCC
Confidence 6999999999999999999994 5 4999997 99999999999999 9999999987664
No 8
>KOG1622|consensus
Probab=99.41 E-value=7.4e-14 Score=109.37 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=49.1
Q ss_pred ceeeeeeCCCccccceEEE-----ec---cCC--CCCcc----h--HHHHHHhhhhhccCCCCCcceEEEec
Q psy7160 2 LRSICSQGDCRSYNYVVGI-----SC---EKE--PDWTD----L--AVIARIVPKAKDKESKKETNNITLMR 57 (67)
Q Consensus 2 VkSVGVqGD~RtY~y~i~L-----Ra---~D~--a~w~~----L--e~La~is~ri~n~Vnr~~vnRVvy~~ 57 (67)
|||||||||+|||+|+|+| |+ .|| ++|.. + ++|-+++++|+|+| +|||||.|=.
T Consensus 472 irtvGVqgDkrsys~vialPPr~~R~~~t~DFMTg~p~~pg~e~p~k~l~kmvt~I~nkv--~GIsRVlyDl 541 (552)
T KOG1622|consen 472 IRTVGVQGDKRSYSYVIALPPRPLRAFTTSDFMTGDPATPGNEFPVKFLLKMVTEICNKV--PGISRVLYDL 541 (552)
T ss_pred eeeeeeecccceeceEEecCCccccceecccccccCCCCCCccccHHHHHHHHHHHHhcC--ccHHHHHhhc
Confidence 7999999999999999999 88 574 88886 4 99999999999999 9999999843
No 9
>KOG4022|consensus
Probab=32.71 E-value=44 Score=24.42 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.3
Q ss_pred CCCCCcchHHHHHHhhhhhccCCCCC
Q psy7160 24 KEPDWTDLAVIARIVPKAKDKESKKE 49 (67)
Q Consensus 24 D~a~w~~Le~La~is~ri~n~Vnr~~ 49 (67)
||..|.+|+|++..--+-+.+-||+.
T Consensus 191 DfssWTPL~fi~e~flkWtt~~~RPs 216 (236)
T KOG4022|consen 191 DFSSWTPLSFISEHFLKWTTETSRPS 216 (236)
T ss_pred cccCcccHHHHHHHHHHHhccCCCCC
Confidence 45679999999999888888887774
No 10
>COG1351 THY1 Predicted alternative thymidylate synthase [Nucleotide transport and metabolism]
Probab=31.64 E-value=7.1 Score=28.79 Aligned_cols=40 Identities=20% Similarity=0.466 Sum_probs=30.9
Q ss_pred eeeeCCCccccceEEEeccCCCCCcc-------hHHHHHHhhhhhcc
Q psy7160 5 ICSQGDCRSYNYVVGISCEKEPDWTD-------LAVIARIVPKAKDK 44 (67)
Q Consensus 5 VGVqGD~RtY~y~i~LRa~D~a~w~~-------Le~La~is~ri~n~ 44 (67)
.+|+|+.|++.+-+.||+...|.|+- |+.|.+..|.++..
T Consensus 188 ~~vt~N~Rsl~hf~~lR~~~~Aq~EIR~lA~~~~~~l~~~~P~~~~~ 234 (273)
T COG1351 188 IVVTGNARSLQHFLSLRLSEHAQWEIRELAEAILEELKKVVPSVFED 234 (273)
T ss_pred EEEEEcHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHChHHHHH
Confidence 68999999999999999866666552 47777777766543
No 11
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=30.64 E-value=24 Score=21.17 Aligned_cols=15 Identities=47% Similarity=0.711 Sum_probs=11.9
Q ss_pred eeeeeeCCCccccce
Q psy7160 3 RSICSQGDCRSYNYV 17 (67)
Q Consensus 3 kSVGVqGD~RtY~y~ 17 (67)
+-|.|++|+|+..|.
T Consensus 22 ~vvsv~~dgrsV~Yt 36 (68)
T PF02831_consen 22 RVVSVQGDGRSVTYT 36 (68)
T ss_dssp SEEEEEETTEEEEEE
T ss_pred ceeEeecCCeEEEEe
Confidence 357799999998873
No 12
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.11 E-value=24 Score=21.12 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=10.1
Q ss_pred eeCCCccccceE
Q psy7160 7 SQGDCRSYNYVV 18 (67)
Q Consensus 7 VqGD~RtY~y~i 18 (67)
||-|+|+|.|+-
T Consensus 41 V~eDgR~y~F~Y 52 (62)
T PF15513_consen 41 VMEDGRHYTFVY 52 (62)
T ss_pred EEeCCCEEEEEE
Confidence 788999998864
No 13
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=29.76 E-value=55 Score=23.36 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhccCCCCCcceEEEecCcccCCC
Q psy7160 32 AVIARIVPKAKDKESKKETNNITLMRGQVSSDG 64 (67)
Q Consensus 32 e~La~is~ri~n~Vnr~~vnRVvy~~g~~~~~~ 64 (67)
+.|..+..+-+++ +..+|+||++-+.|
T Consensus 122 d~Le~~l~~A~~~------~~~iyvFG~~F~~g 148 (206)
T PF10042_consen 122 DDLEPYLQRAISD------DATIYVFGEPFRPG 148 (206)
T ss_pred HHHHHHHHHHHhC------CCEEEEECceecCC
Confidence 7777777666555 78999999998554
No 14
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=26.96 E-value=32 Score=26.43 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=21.3
Q ss_pred CCCcchHHHHHHhhhhhccCCCC
Q psy7160 26 PDWTDLAVIARIVPKAKDKESKK 48 (67)
Q Consensus 26 a~w~~Le~La~is~ri~n~Vnr~ 48 (67)
-+|+-|+.++..+.+.+++|||.
T Consensus 278 lp~~~L~~is~RI~nEv~~V~RV 300 (315)
T COG0519 278 LPYDVLEKISNRITNEVPGVNRV 300 (315)
T ss_pred CCHHHHHHHHHHhhhcCCCcceE
Confidence 47999999999999999999985
No 15
>PHA02751 hypothetical protein; Provisional
Probab=26.77 E-value=31 Score=25.14 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.4
Q ss_pred hhhhhccCCCCCcceEEEecCcccCC
Q psy7160 38 VPKAKDKESKKETNNITLMRGQVSSD 63 (67)
Q Consensus 38 s~ri~n~Vnr~~vnRVvy~~g~~~~~ 63 (67)
.+-.|.+| .|..|.||+||..+.|
T Consensus 119 EnakCdnv--vglgR~CvIfGalVrd 142 (233)
T PHA02751 119 ENAKCDNV--VGLGRLCVIFGALVRD 142 (233)
T ss_pred cccccccc--cccceEEEEEeeEEee
Confidence 35678888 9999999999998764
Done!